SYMBOL INDEX (499 symbols across 91 files)

FILE: baseline/funsearch/bin_packing_utils.py
  function l1_bound (line 2205) | def l1_bound(items: Tuple[int, ...], capacity: int) -> float:
  function l1_bound_dataset (line 2218) | def l1_bound_dataset(instances: dict) -> float:

FILE: baseline/funsearch/funsearch_bin_packing_llm_api.py
  function _trim_preface_of_body (line 20) | def _trim_preface_of_body(sample: str) -> str:
  class LLMAPI (line 57) | class LLMAPI(sampler.LLM):
    method __init__ (line 61) | def __init__(self, samples_per_prompt: int, trim=True):
    method draw_samples (line 69) | def draw_samples(self, prompt: str) -> Collection[str]:
    method _draw_sample (line 73) | def _draw_sample(self, content: str) -> str:
  class Sandbox (line 106) | class Sandbox(evaluator.Sandbox):
    method __init__ (line 114) | def __init__(self, verbose=False, numba_accelerate=True):
    method run (line 124) | def run(
    method _compile_and_run_function (line 173) | def _compile_and_run_function(self, program, function_to_run, function...

FILE: baseline/funsearch/funsearch_bin_packing_local_llm.py
  function _trim_preface_of_body (line 15) | def _trim_preface_of_body(sample: str) -> str:
  class LocalLLM (line 52) | class LocalLLM(sampler.LLM):
    method __init__ (line 56) | def __init__(self, samples_per_prompt: int, batch_inference: bool = Tr...
    method draw_samples (line 71) | def draw_samples(self, prompt: str) -> Collection[str]:
    method _do_request (line 94) | def _do_request(self, content: str) -> str:
  class Sandbox (line 117) | class Sandbox(evaluator.Sandbox):
    method __init__ (line 125) | def __init__(self, verbose=False, numba_accelerate=True):
    method run (line 135) | def run(
    method _compile_and_run_function (line 184) | def _compile_and_run_function(self, program, function_to_run, function...

FILE: baseline/funsearch/implementation/code_manipulation.py
  class Function (line 41) | class Function:
    method __str__ (line 54) | def __str__(self) -> str:
    method __setattr__ (line 69) | def __setattr__(self, name: str, value: str) -> None:
  class Program (line 82) | class Program:
    method __str__ (line 90) | def __str__(self) -> str:
    method find_function_index (line 95) | def find_function_index(self, function_name: str) -> int:
    method get_function (line 111) | def get_function(self, function_name: str) -> Function:
  class ProgramVisitor (line 116) | class ProgramVisitor(ast.NodeVisitor):
    method __init__ (line 122) | def __init__(self, sourcecode: str):
    method visit_FunctionDef (line 128) | def visit_FunctionDef(self,  # pylint: disable=invalid-name
    method return_program (line 178) | def return_program(self) -> Program:
  function text_to_program (line 182) | def text_to_program(text: str) -> Program:
  function text_to_function (line 197) | def text_to_function(text: str) -> Function:
  function _tokenize (line 206) | def _tokenize(code: str) -> Iterator[tokenize.TokenInfo]:
  function _untokenize (line 213) | def _untokenize(tokens: Sequence[tokenize.TokenInfo]) -> str:
  function _yield_token_and_is_call (line 219) | def _yield_token_and_is_call(code: str) -> Iterator[tuple[tokenize.Token...
  function rename_function_calls (line 247) | def rename_function_calls(code: str, source_name: str, target_name: str)...
  function get_functions_called (line 269) | def get_functions_called(code: str) -> MutableSet[str]:
  function yield_decorated (line 276) | def yield_decorated(code: str, module: str, name: str) -> Iterator[str]:

FILE: baseline/funsearch/implementation/config.py
  class ProgramsDatabaseConfig (line 27) | class ProgramsDatabaseConfig:
  class Config (line 47) | class Config:
  class ClassConfig (line 69) | class ClassConfig:

FILE: baseline/funsearch/implementation/evaluator.py
  class _FunctionLineVisitor (line 31) | class _FunctionLineVisitor(ast.NodeVisitor):
    method __init__ (line 34) | def __init__(self, target_function_name: str) -> None:
    method visit_FunctionDef (line 38) | def visit_FunctionDef(self, node: Any) -> None:  # pylint: disable=inv...
    method function_end_line (line 45) | def function_end_line(self) -> int:
  function _trim_function_body (line 51) | def _trim_function_body(generated_code: str) -> str:
  function _sample_to_program (line 85) | def _sample_to_program(
  class Sandbox (line 108) | class Sandbox(ABC):
    method run (line 115) | def run(
  function _calls_ancestor (line 132) | def _calls_ancestor(program: str, function_to_evolve: str) -> bool:
  class Evaluator (line 144) | class Evaluator:
    method __init__ (line 147) | def __init__(
    method analyse (line 165) | def analyse(

FILE: baseline/funsearch/implementation/evaluator_accelerate.py
  function add_numba_decorator (line 8) | def add_numba_decorator(

FILE: baseline/funsearch/implementation/funsearch.py
  function _extract_function_names (line 33) | def _extract_function_names(specification: str) -> Tuple[str, str]:
  function main (line 51) | def main(

FILE: baseline/funsearch/implementation/profile.py
  class Profiler (line 15) | class Profiler:
    method __init__ (line 16) | def __init__(
    method _write_tensorboard (line 52) | def _write_tensorboard(self):
    method _write_json (line 75) | def _write_json(self, programs: code_manipulation.Function):
    method register_function (line 89) | def register_function(self, programs: code_manipulation.Function):
    method _record_and_verbose (line 101) | def _record_and_verbose(self, sample_orders: int):

FILE: baseline/funsearch/implementation/programs_database.py
  function _softmax (line 41) | def _softmax(logits: np.ndarray, temperature: float) -> np.ndarray:
  function _reduce_score (line 56) | def _reduce_score(scores_per_test: ScoresPerTest) -> float:
  function _get_signature (line 65) | def _get_signature(scores_per_test: ScoresPerTest) -> Signature:
  class Prompt (line 71) | class Prompt:
  class ProgramsDatabase (line 86) | class ProgramsDatabase:
    method __init__ (line 89) | def __init__(
    method get_prompt (line 115) | def get_prompt(self) -> Prompt:
    method _register_program_in_island (line 121) | def _register_program_in_island(
    method register_program (line 149) | def register_program(
    method reset_islands (line 172) | def reset_islands(self) -> None:
  class Island (line 195) | class Island:
    method __init__ (line 198) | def __init__(
    method register_program (line 216) | def register_program(
    method get_prompt (line 230) | def get_prompt(self) -> tuple[str, int]:
    method _generate_prompt (line 261) | def _generate_prompt(
  class Cluster (line 299) | class Cluster:
    method __init__ (line 302) | def __init__(self, score: float, implementation: code_manipulation.Fun...
    method score (line 308) | def score(self) -> float:
    method register_program (line 312) | def register_program(self, program: code_manipulation.Function) -> None:
    method sample_program (line 317) | def sample_program(self) -> code_manipulation.Function:

FILE: baseline/funsearch/implementation/sampler.py
  class LLM (line 28) | class LLM(ABC):
    method __init__ (line 57) | def __init__(self, samples_per_prompt: int) -> None:
    method _draw_sample (line 60) | def _draw_sample(self, prompt: str) -> str:
    method draw_samples (line 65) | def draw_samples(self, prompt: str) -> Collection[str]:
  class Sampler (line 70) | class Sampler:
    method __init__ (line 75) | def __init__(
    method sample (line 89) | def sample(self, **kwargs):
    method _get_global_sample_nums (line 115) | def _get_global_sample_nums(self) -> int:
    method set_global_sample_nums (line 118) | def set_global_sample_nums(self, num):
    method _global_sample_nums_plus_one (line 121) | def _global_sample_nums_plus_one(self):

FILE: baseline/funsearch/llm-server/llm_server.py
  function completions (line 72) | def completions():

FILE: baseline/funsearch/llm-server/request.py
  function process_response_content (line 61) | def process_response_content(content: str) -> str:

FILE: eoh/src/eoh/eoh.py
  class EVOL (line 9) | class EVOL:
    method __init__ (line 12) | def __init__(self, paras, prob=None, **kwargs):
    method run (line 32) | def run(self):

FILE: eoh/src/eoh/llm/api_general.py
  class InterfaceAPI (line 5) | class InterfaceAPI:
    method __init__ (line 6) | def __init__(self, api_endpoint, api_key, model_LLM, debug_mode):
    method get_response (line 13) | def get_response(self, prompt_content):

FILE: eoh/src/eoh/llm/api_hf_inter.py
  class InterfaceHF (line 5) | class InterfaceHF():
    method __init__ (line 7) | def __init__(self,key,model_LLM,debug_mode):
    method get_response (line 12) | def get_response(self,prompt_content):

FILE: eoh/src/eoh/llm/api_local_llm.py
  class InterfaceLocalLLM (line 7) | class InterfaceLocalLLM:
    method __init__ (line 11) | def __init__(self, url):
    method get_response (line 14) | def get_response(self, content: str) -> str:
    method _do_request (line 22) | def _do_request(self, content: str) -> str:

FILE: eoh/src/eoh/llm/interface_LLM.py
  class InterfaceLLM (line 4) | class InterfaceLLM:
    method __init__ (line 5) | def __init__(self, api_endpoint, api_key, model_LLM,llm_use_local,llm_...
    method get_response (line 53) | def get_response(self, prompt_content):

FILE: eoh/src/eoh/llm_local_server/codellama_instruct_server.py
  function get_prompt (line 69) | def get_prompt(messages: list, system_prompt: str) -> str:
  function format_prompt (line 84) | def format_prompt(prompt: str, sys_prompt='') -> str:
  function completions (line 94) | def completions():

FILE: eoh/src/eoh/llm_local_server/codellama_server.py
  function completions (line 70) | def completions():

FILE: eoh/src/eoh/llm_local_server/deepseek_coder_server.py
  function completions (line 72) | def completions():

FILE: eoh/src/eoh/llm_local_server/gemma_instruct_server.py
  function completions (line 65) | def completions():

FILE: eoh/src/eoh/llm_local_server/starcoder_server.py
  function completions (line 70) | def completions():

FILE: eoh/src/eoh/methods/ael/ael.py
  class AEL (line 8) | class AEL:
    method __init__ (line 11) | def __init__(self, paras, problem, select, manage, **kwargs):
    method add2pop (line 64) | def add2pop(self, population, offspring):
    method run (line 74) | def run(self):

FILE: eoh/src/eoh/methods/ael/ael_evolution.py
  class Evolution (line 5) | class Evolution():
    method __init__ (line 7) | def __init__(self, api_endpoint, api_key, model_LLM, debug_mode,prompt...
    method get_prompt_i1 (line 45) | def get_prompt_i1(self):
    method get_prompt_crossover (line 57) | def get_prompt_crossover(self,indivs):
    method get_prompt_mutation (line 75) | def get_prompt_mutation(self,indiv1):
    method _get_alg (line 92) | def _get_alg(self,prompt_content):
    method i1 (line 142) | def i1(self):
    method crossover (line 161) | def crossover(self,parents):
    method mutation (line 181) | def mutation(self,parents):

FILE: eoh/src/eoh/methods/ael/ael_interface_EC.py
  class InterfaceEC (line 10) | class InterfaceEC():
    method __init__ (line 11) | def __init__(self, pop_size, m, api_endpoint, api_key, llm_model, debu...
    method code2file (line 33) | def code2file(self,code):
    method add2pop (line 39) | def add2pop(self,population,offspring):
    method check_duplicate (line 48) | def check_duplicate(self,population,code):
    method population_generation (line 65) | def population_generation(self):
    method population_generation_seed (line 77) | def population_generation_seed(self,seeds,n_p):
    method _get_alg (line 105) | def _get_alg(self,pop,operator):
    method get_offspring (line 126) | def get_offspring(self, pop, operator):
    method get_algorithm (line 213) | def get_algorithm(self, pop, operator):

FILE: eoh/src/eoh/methods/ael/evaluator_accelerate.py
  function add_import_package_statement (line 10) | def add_import_package_statement(program: str, package_name: str, as_nam...
  function _add_numba_decorator (line 32) | def _add_numba_decorator(
  function add_numba_decorator (line 73) | def add_numba_decorator(
  function add_np_random_seed_below_numpy_import (line 100) | def add_np_random_seed_below_numpy_import(program: str, seed: int = 2024...
  class _CustomDivisionTransformer (line 144) | class _CustomDivisionTransformer(ast.NodeTransformer):
    method __init__ (line 145) | def __init__(self, custom_divide_func_name: str):
    method visit_BinOp (line 149) | def visit_BinOp(self, node):
  function replace_div_with_protected_div (line 162) | def replace_div_with_protected_div(code_str: str, delta=1e-5, numba_acce...
  function add_numpy_random_seed_to_func (line 178) | def add_numpy_random_seed_to_func(program: str, func_name: str, seed: in...

FILE: eoh/src/eoh/methods/eoh/eoh.py
  class EOH (line 8) | class EOH:
    method __init__ (line 11) | def __init__(self, paras, problem, select, manage, **kwargs):
    method add2pop (line 67) | def add2pop(self, population, offspring):
    method run (line 77) | def run(self):

FILE: eoh/src/eoh/methods/eoh/eoh_evolution.py
  class Evolution (line 5) | class Evolution():
    method __init__ (line 7) | def __init__(self, api_endpoint, api_key, model_LLM,llm_use_local,llm_...
    method get_prompt_i1 (line 36) | def get_prompt_i1(self):
    method get_prompt_e1 (line 48) | def get_prompt_e1(self,indivs):
    method get_prompt_e2 (line 65) | def get_prompt_e2(self,indivs):
    method get_prompt_m1 (line 82) | def get_prompt_m1(self,indiv1):
    method get_prompt_m2 (line 97) | def get_prompt_m2(self,indiv1):
    method get_prompt_m3 (line 112) | def get_prompt_m3(self,indiv1):
    method _get_alg (line 121) | def _get_alg(self,prompt_content):
    method i1 (line 171) | def i1(self):
    method e1 (line 190) | def e1(self,parents):
    method e2 (line 209) | def e2(self,parents):
    method m1 (line 228) | def m1(self,parents):
    method m2 (line 247) | def m2(self,parents):
    method m3 (line 266) | def m3(self,parents):

FILE: eoh/src/eoh/methods/eoh/eoh_interface_EC.py
  class InterfaceEC (line 10) | class InterfaceEC():
    method __init__ (line 11) | def __init__(self, pop_size, m, api_endpoint, api_key, llm_model,llm_u...
    method code2file (line 30) | def code2file(self,code):
    method add2pop (line 36) | def add2pop(self,population,offspring):
    method check_duplicate (line 45) | def check_duplicate(self,population,code):
    method population_generation (line 62) | def population_generation(self):
    method population_generation_seed (line 75) | def population_generation_seed(self,seeds,n_p):
    method _get_alg (line 103) | def _get_alg(self,pop,operator):
    method get_offspring (line 133) | def get_offspring(self, pop, operator):
    method get_algorithm (line 218) | def get_algorithm(self, pop, operator):

FILE: eoh/src/eoh/methods/eoh/evaluator_accelerate.py
  function add_import_package_statement (line 10) | def add_import_package_statement(program: str, package_name: str, as_nam...
  function _add_numba_decorator (line 32) | def _add_numba_decorator(
  function add_numba_decorator (line 73) | def add_numba_decorator(
  function add_np_random_seed_below_numpy_import (line 100) | def add_np_random_seed_below_numpy_import(program: str, seed: int = 2024...
  class _CustomDivisionTransformer (line 144) | class _CustomDivisionTransformer(ast.NodeTransformer):
    method __init__ (line 145) | def __init__(self, custom_divide_func_name: str):
    method visit_BinOp (line 149) | def visit_BinOp(self, node):
  function replace_div_with_protected_div (line 162) | def replace_div_with_protected_div(code_str: str, delta=1e-5, numba_acce...
  function add_numpy_random_seed_to_func (line 178) | def add_numpy_random_seed_to_func(program: str, func_name: str, seed: in...

FILE: eoh/src/eoh/methods/localsearch/evaluator_accelerate.py
  function add_import_package_statement (line 10) | def add_import_package_statement(program: str, package_name: str, as_nam...
  function _add_numba_decorator (line 32) | def _add_numba_decorator(
  function add_numba_decorator (line 73) | def add_numba_decorator(
  function add_np_random_seed_below_numpy_import (line 100) | def add_np_random_seed_below_numpy_import(program: str, seed: int = 2024...
  class _CustomDivisionTransformer (line 144) | class _CustomDivisionTransformer(ast.NodeTransformer):
    method __init__ (line 145) | def __init__(self, custom_divide_func_name: str):
    method visit_BinOp (line 149) | def visit_BinOp(self, node):
  function replace_div_with_protected_div (line 162) | def replace_div_with_protected_div(code_str: str, delta=1e-5, numba_acce...
  function add_numpy_random_seed_to_func (line 178) | def add_numpy_random_seed_to_func(program: str, func_name: str, seed: in...

FILE: eoh/src/eoh/methods/localsearch/ls.py
  class LS (line 8) | class LS:
    method __init__ (line 11) | def __init__(self, paras, problem, select, manage, **kwargs):
    method add2pop (line 63) | def add2pop(self, population, offspring):
    method run (line 73) | def run(self):

FILE: eoh/src/eoh/methods/localsearch/ls_evolution.py
  class Evolution (line 5) | class Evolution():
    method __init__ (line 7) | def __init__(self, api_endpoint, api_key, model_LLM, debug_mode,prompt...
    method get_prompt_i1 (line 45) | def get_prompt_i1(self):
    method get_prompt_e1 (line 57) | def get_prompt_e1(self,indivs):
    method get_prompt_e2 (line 74) | def get_prompt_e2(self,indivs):
    method get_prompt_m1 (line 91) | def get_prompt_m1(self,indiv1):
    method get_prompt_m2 (line 106) | def get_prompt_m2(self,indiv1):
    method _get_alg (line 122) | def _get_alg(self,prompt_content):
    method i1 (line 172) | def i1(self):
    method e1 (line 191) | def e1(self,parents):
    method e2 (line 210) | def e2(self,parents):
    method m1 (line 229) | def m1(self,parents):
    method m2 (line 248) | def m2(self,parents):

FILE: eoh/src/eoh/methods/localsearch/ls_interface_EC.py
  class InterfaceEC (line 9) | class InterfaceEC():
    method __init__ (line 10) | def __init__(self, pop_size, m, api_endpoint, api_key, llm_model, debu...
    method code2file (line 30) | def code2file(self,code):
    method add2pop (line 36) | def add2pop(self,population,offspring):
    method check_duplicate (line 45) | def check_duplicate(self,population,code):
    method population_generation (line 62) | def population_generation(self):
    method population_generation_seed (line 71) | def population_generation_seed(self,seeds,n_p):
    method _get_alg (line 99) | def _get_alg(self,pop,operator):
    method get_offspring (line 117) | def get_offspring(self, pop, operator):
    method get_algorithm (line 171) | def get_algorithm(self, pop, operator):

FILE: eoh/src/eoh/methods/management/ls_greedy.py
  function population_management (line 3) | def population_management(population, new, temperature):

FILE: eoh/src/eoh/methods/management/ls_sa.py
  function acceptance_probability (line 4) | def acceptance_probability(old_cost, new_cost, temperature):
  function population_management (line 9) | def population_management(population, new, temperature):

FILE: eoh/src/eoh/methods/management/pop_greedy.py
  function population_management (line 3) | def population_management(pop,size):

FILE: eoh/src/eoh/methods/methods.py
  class Methods (line 5) | class Methods():
    method __init__ (line 6) | def __init__(self,paras,problem) -> None:
    method get_method (line 32) | def get_method(self):

FILE: eoh/src/eoh/methods/selection/equal.py
  function parent_selection (line 2) | def parent_selection(population, m):

FILE: eoh/src/eoh/methods/selection/prob_rank.py
  function parent_selection (line 2) | def parent_selection(pop,m):

FILE: eoh/src/eoh/methods/selection/roulette_wheel.py
  function parent_selection (line 2) | def parent_selection(population, m):

FILE: eoh/src/eoh/methods/selection/tournament.py
  function parent_selection (line 4) | def parent_selection(population, m):

FILE: eoh/src/eoh/problems/machinelearning/L_AutoDA/ael_evaluation.py
  class Evaluation (line 22) | class Evaluation():
    method __init__ (line 23) | def __init__(self, dataset_path=DATASET_PATH, dataset_name=DATASET, nu...
    method greedy (line 33) | def greedy(self, eva):
    method evaluate (line 52) | def evaluate(self):

FILE: eoh/src/eoh/problems/machinelearning/L_AutoDA/ael_prompts.py
  class GetPrompts (line 2) | class GetPrompts():
    method __init__ (line 3) | def __init__(self):
    method get_task (line 26) | def get_task(self):
    method get_func_name (line 29) | def get_func_name(self):
    method get_func_inputs (line 32) | def get_func_inputs(self):
    method get_func_outputs (line 35) | def get_func_outputs(self):
    method get_inout_inf (line 38) | def get_inout_inf(self):
    method get_other_inf (line 41) | def get_other_inf(self):
  function select_next_node (line 92) | def select_next_node(current_node, destination_node, unvisited_nodes, di...

FILE: eoh/src/eoh/problems/machinelearning/L_AutoDA/attacks/evo_for_ael_no_mem.py
  class EvoAttack (line 34) | class EvoAttack(MinimizationAttack):
    method __init__ (line 37) | def __init__(
    method run (line 51) | def run(
    method _f_p (line 176) | def _f_p(self, p):

FILE: eoh/src/eoh/problems/machinelearning/L_AutoDA/utils/get_data.py
  function setup_seed (line 8) | def setup_seed(seed):
  function get_data_by_id (line 16) | def get_data_by_id(dataset_name, use_train_data=False, data_path=None):
  function create_idx_by_id (line 45) | def create_idx_by_id(dataset_name, data_set, save_path=None):

FILE: eoh/src/eoh/problems/machinelearning/L_AutoDA/utils/get_model.py
  function get_model (line 13) | def get_model(model_name="cifar10", model_path=None):
  function get_cifar10_model (line 22) | def get_cifar10_model(model_path=None):
  function get_imagenet_model (line 50) | def get_imagenet_model(model_path=None):

FILE: eoh/src/eoh/problems/optimization/bp_online/get_instance.py
  class GetData (line 3) | class GetData():
    method __init__ (line 4) | def __init__(self) -> None:
    method l1_bound (line 43) | def l1_bound(self,items: tuple, capacity: int) -> float:
    method l1_bound_dataset (line 56) | def l1_bound_dataset(self,instances: dict) -> float:
    method get_instances (line 71) | def get_instances(self):

FILE: eoh/src/eoh/problems/optimization/bp_online/prompts.py
  class GetPrompts (line 1) | class GetPrompts():
    method __init__ (line 2) | def __init__(self):
    method get_task (line 13) | def get_task(self):
    method get_func_name (line 16) | def get_func_name(self):
    method get_func_inputs (line 19) | def get_func_inputs(self):
    method get_func_outputs (line 22) | def get_func_outputs(self):
    method get_inout_inf (line 25) | def get_inout_inf(self):
    method get_other_inf (line 28) | def get_other_inf(self):

FILE: eoh/src/eoh/problems/optimization/bp_online/run.py
  class BPONLINE (line 9) | class BPONLINE():
    method __init__ (line 10) | def __init__(self):
    method get_valid_bin_indices (line 15) | def get_valid_bin_indices(self,item: float, bins: np.ndarray) -> np.nd...
    method online_binpack (line 20) | def online_binpack(self,items: tuple, bins: np.ndarray, alg):
    method evaluateGreedy (line 43) | def evaluateGreedy(self,alg) -> float:
    method evaluate (line 105) | def evaluate(self, code_string):

FILE: eoh/src/eoh/problems/optimization/tsp_greedy/get_instance.py
  class GetData (line 3) | class GetData():
    method __init__ (line 4) | def __init__(self,n_instance,n_cities):
    method generate_instances (line 8) | def generate_instances(self):

FILE: eoh/src/eoh/problems/optimization/tsp_greedy/prompts.py
  class GetPrompts (line 2) | class GetPrompts():
    method __init__ (line 3) | def __init__(self):
    method get_task (line 14) | def get_task(self):
    method get_func_name (line 17) | def get_func_name(self):
    method get_func_inputs (line 20) | def get_func_inputs(self):
    method get_func_outputs (line 23) | def get_func_outputs(self):
    method get_inout_inf (line 26) | def get_inout_inf(self):
    method get_other_inf (line 29) | def get_other_inf(self):

FILE: eoh/src/eoh/problems/optimization/tsp_greedy/run.py
  class TSPCONST (line 9) | class TSPCONST():
    method __init__ (line 10) | def __init__(self) -> None:
    method tour_cost (line 32) | def tour_cost(self,instance, solution, problem_size):
    method generate_neighborhood_matrix (line 39) | def generate_neighborhood_matrix(self,instance):
    method greedy (line 53) | def greedy(self,eva):
    method evaluate (line 116) | def evaluate(self, code_string):

FILE: eoh/src/eoh/problems/problems.py
  class Probs (line 5) | class Probs():
    method __init__ (line 6) | def __init__(self,paras):
    method get_problem (line 23) | def get_problem(self):

FILE: eoh/src/eoh/utils/createFolders.py
  function create_folders (line 3) | def create_folders(results_path):

FILE: eoh/src/eoh/utils/createReport.py
  class ReportCreator (line 10) | class ReportCreator():
    method __init__ (line 11) | def __init__(self,paras) -> None:
    method create_convergence (line 18) | def create_convergence(self):
    method get_final_algorithms (line 83) | def get_final_algorithms(self):
    method generate_doc_report (line 105) | def generate_doc_report(self):

FILE: eoh/src/eoh/utils/getParas.py
  class Paras (line 2) | class Paras():
    method __init__ (line 3) | def __init__(self):
    method set_parallel (line 49) | def set_parallel(self):
    method set_ec (line 56) | def set_ec(self):
    method set_evaluation (line 91) | def set_evaluation(self):
    method set_paras (line 98) | def set_paras(self, *args, **kwargs):

FILE: eoh/src/eoh/utils/get_all_results.py
  function code2file (line 8) | def code2file(algorithm,code,n,ng):

FILE: examples/bp_online/evaluation/evaluation.py
  class Evaluation (line 4) | class Evaluation():
    method __init__ (line 5) | def __init__(self):
    method get_valid_bin_indices (line 10) | def get_valid_bin_indices(self,item: float, bins: np.ndarray) -> np.nd...
    method online_binpack (line 15) | def online_binpack(self,items: tuple, bins: np.ndarray, alg):
    method evaluateGreedy (line 36) | def evaluateGreedy(self,instances: dict,alg) -> float:

FILE: examples/bp_online/evaluation/get_instance.py
  class GetData (line 3) | class GetData():
    method __init__ (line 4) | def __init__(self) -> None:
    method read_dataset_from_file (line 25) | def read_dataset_from_file(self,filename):
    method l1_bound (line 44) | def l1_bound(self,items: tuple, capacity: int) -> float:
    method l1_bound_dataset (line 57) | def l1_bound_dataset(self,instances: dict) -> float:
    method get_instances (line 72) | def get_instances(self,capacity,size):

FILE: examples/bp_online/evaluation/heuristic.py
  function score (line 4) | def score(item, bins):

FILE: examples/bp_online/evaluation/testingdata/generate_instances.py
  function generate_weibull_dataset (line 4) | def generate_weibull_dataset(num_instances, num_items, clipping_limit):
  function read_dataset_from_file (line 30) | def read_dataset_from_file(filename):
  function write_dataset_to_file (line 72) | def write_dataset_to_file(dataset, filename):

FILE: examples/bp_online_localLLM/evaluation/evaluation.py
  class Evaluation (line 4) | class Evaluation():
    method __init__ (line 5) | def __init__(self):
    method get_valid_bin_indices (line 10) | def get_valid_bin_indices(self,item: float, bins: np.ndarray) -> np.nd...
    method online_binpack (line 15) | def online_binpack(self,items: tuple, bins: np.ndarray, alg):
    method evaluateGreedy (line 36) | def evaluateGreedy(self,instances: dict,alg) -> float:

FILE: examples/bp_online_localLLM/evaluation/get_instance.py
  class GetData (line 3) | class GetData():
    method __init__ (line 4) | def __init__(self) -> None:
    method read_dataset_from_file (line 25) | def read_dataset_from_file(self,filename):
    method l1_bound (line 44) | def l1_bound(self,items: tuple, capacity: int) -> float:
    method l1_bound_dataset (line 57) | def l1_bound_dataset(self,instances: dict) -> float:
    method get_instances (line 72) | def get_instances(self,capacity,size):

FILE: examples/bp_online_localLLM/evaluation/heuristic.py
  function score (line 4) | def score(item, bins):

FILE: examples/bp_online_localLLM/evaluation/testingdata/generate_instances.py
  function generate_weibull_dataset (line 4) | def generate_weibull_dataset(num_instances, num_items, clipping_limit):
  function read_dataset_from_file (line 30) | def read_dataset_from_file(filename):
  function write_dataset_to_file (line 72) | def write_dataset_to_file(dataset, filename):

FILE: examples/tsp_construct/evaluation/evaluation.py
  class Evaluation (line 7) | class Evaluation():
    method __init__ (line 8) | def __init__(self,problem_size,dataset,n_test,debug_mode=False) -> None:
    method tour_cost (line 18) | def tour_cost(self,instance, solution, problem_size):
    method generate_neighborhood_matrix (line 25) | def generate_neighborhood_matrix(self,instance):
    method route_plot (line 38) | def route_plot(self, instance, route):
    method evaluate (line 66) | def evaluate(self):

FILE: examples/tsp_construct/evaluation/heuristic.py
  function select_next_node (line 4) | def select_next_node(current_node, destination_node, unvisited_nodes, di...

FILE: examples/user_bo_caf/best_alg.py
  function utility (line 4) | def utility(train_x, train_y, best_x, best_y, test_x, mean_test_y, std_t...

FILE: examples/user_bo_caf/prob.py
  class CostModel (line 31) | class CostModel(torch.nn.Module, ABC):
    method forward (line 37) | def forward(self, X):
  class CostModelGP (line 41) | class CostModelGP(CostModel):
    method __init__ (line 47) | def __init__(self, X, Y_cost):
    method forward (line 55) | def forward(self, X):
  class CustomAF (line 58) | class CustomAF(AnalyticAcquisitionFunction):
    method __init__ (line 59) | def __init__(self, alg, model, cost_model,
    method forward (line 74) | def forward(self, test_x: Tensor) -> Tensor:
  class ExpectedImprovementWithCost (line 87) | class ExpectedImprovementWithCost(AnalyticAcquisitionFunction):
    method __init__ (line 93) | def __init__(self, model, cost_model, best_f, budget_init, budget_used...
    method forward (line 100) | def forward(self, X):
  class Evaluation (line 104) | class Evaluation():
    method __init__ (line 105) | def __init__(self) -> None:
    method eval_objective (line 113) | def eval_objective(self, real_problem,x):
    method eval_cost (line 118) | def eval_cost(self, real_problem,x):
    method get_initial_points (line 125) | def get_initial_points(self, dim, n_pts, seed=0):
    method EGO (line 130) | def EGO(self, code_string, cost_total, real_problem, random_seed):
    method EvalEGO (line 219) | def EvalEGO(self,code_string):
    method evaluate (line 233) | def evaluate(self, code_string):

FILE: examples/user_bo_caf/prompts.py
  class GetPrompts (line 1) | class GetPrompts():
    method __init__ (line 2) | def __init__(self):
    method get_task (line 22) | def get_task(self):
    method get_func_name (line 25) | def get_func_name(self):
    method get_func_inputs (line 28) | def get_func_inputs(self):
    method get_func_outputs (line 31) | def get_func_outputs(self):
    method get_inout_inf (line 34) | def get_inout_inf(self):
    method get_other_inf (line 37) | def get_other_inf(self):

FILE: examples/user_bp_online/get_instance.py
  class GetData (line 3) | class GetData():
    method __init__ (line 4) | def __init__(self) -> None:
    method l1_bound (line 43) | def l1_bound(self,items: tuple, capacity: int) -> float:
    method l1_bound_dataset (line 56) | def l1_bound_dataset(self,instances: dict) -> float:
    method get_instances (line 71) | def get_instances(self):

FILE: examples/user_bp_online/prob.py
  class BPONLINE (line 9) | class BPONLINE():
    method __init__ (line 10) | def __init__(self):
    method get_valid_bin_indices (line 15) | def get_valid_bin_indices(self,item: float, bins: np.ndarray) -> np.nd...
    method online_binpack (line 20) | def online_binpack(self,items: tuple, bins: np.ndarray, alg):
    method evaluateGreedy (line 43) | def evaluateGreedy(self,alg) -> float:
    method evaluate (line 105) | def evaluate(self, code_string):

FILE: examples/user_bp_online/prompts.py
  class GetPrompts (line 1) | class GetPrompts():
    method __init__ (line 2) | def __init__(self):
    method get_task (line 13) | def get_task(self):
    method get_func_name (line 16) | def get_func_name(self):
    method get_func_inputs (line 19) | def get_func_inputs(self):
    method get_func_outputs (line 22) | def get_func_outputs(self):
    method get_inout_inf (line 25) | def get_inout_inf(self):
    method get_other_inf (line 28) | def get_other_inf(self):

FILE: examples/user_fssp_gls/jssp/bruteforce.py
  function permute (line 5) | def permute(x, index=0):
  function makespan (line 18) | def makespan(order, tasks, machines_val):
  function bruteforce (line 31) | def bruteforce(tasks, machines_val, tasks_val):
  function read_data (line 50) | def read_data(filename):

FILE: examples/user_fssp_gls/jssp/get_ub.py
  function read_taillard_instances (line 3) | def read_taillard_instances(path):

FILE: examples/user_fssp_gls/jssp/johnsons.py
  function johnson_algorithm (line 5) | def johnson_algorithm(machines_val, tasks):
  function johnson2m (line 15) | def johnson2m(tasks):
  function transform3to2 (line 42) | def transform3to2(tasks):
  function johnson3m (line 53) | def johnson3m(tasks):
  function read_data (line 59) | def read_data(filename):

FILE: examples/user_fssp_gls/jssp/neh.py
  function makespan (line 6) | def makespan(order, tasks, machines_val):
  function sum_and_order (line 19) | def sum_and_order(tasks_val, machines_val, tasks):
  function insert (line 42) | def insert(sequence, position, value):
  function neh (line 48) | def neh(tasks, machines_val, tasks_val):
  function create_graph_LR (line 65) | def create_graph_LR(seq, tasks, machines_val):
  function create_graph_RL (line 107) | def create_graph_RL(seq, tasks, machines_val):
  function makespan_acc (line 136) | def makespan_acc(order, weight_LR, weight_RL, tasks, new_elem):
  function neh_acc (line 170) | def neh_acc(tasks, machines_val, tasks_val):
  function neh_wm (line 188) | def neh_wm(tasks, machines_val, tasks_val):
  function NEH_IR1 (line 211) | def NEH_IR1(sciezka, graf, i, kolejnosc):
  function read_data (line 229) | def read_data(filename):

FILE: examples/user_fssp_gls/jssp/simulated_annealing.py
  function makespan (line 8) | def makespan(order, tasks, machines_val):
  function insert (line 21) | def insert(sequence, tasks_val):
  function swap (line 30) | def swap(list, tasks_val):
  function probability (line 40) | def probability(Cold, Cnew, Temp):
  function annealing1 (line 47) | def annealing1(T, u):
  function local_search (line 51) | def local_search(sequence, cmax_old,tasks,machines_val):
  function sim_ann1 (line 77) | def sim_ann1(tasks_val, tasks, machines_val, T_start, T_end):
  function annealing2 (line 101) | def annealing2(T, k, kmax):
  function sim_ann2 (line 104) | def sim_ann2(tasks_val, tasks, machines_val, T_start, T_end, iter_val):
  function ls (line 134) | def ls(tasks_val, tasks, machines_val):
  function gls (line 151) | def gls(tasks_val, tasks, machines_val):
  function sum_and_order (line 168) | def sum_and_order(tasks_val, machines_val, tasks):
  function insertNEH (line 192) | def insertNEH(sequence, position, value):
  function neh (line 198) | def neh(tasks, machines_val, tasks_val):
  function read_data (line 213) | def read_data(filename):
  function read_ael_instances (line 232) | def read_ael_instances():

FILE: examples/user_fssp_gls/prob.py
  function makespan (line 19) | def makespan(order, tasks, machines_val):
  function local_search (line 33) | def local_search(sequence, cmax_old,tasks,machines_val):
  function local_search_perturb (line 59) | def local_search_perturb(sequence, cmax_old,tasks,machines_val,job):
  class JSSPGLS (line 86) | class JSSPGLS():
    method __init__ (line 87) | def __init__(self) -> None:
    method ls (line 96) | def ls(self,tasks_val, tasks, machines_val):
    method gls (line 113) | def gls(self,heuristic):
    method sum_and_order (line 173) | def sum_and_order(self,tasks_val, machines_val, tasks):
    method insertNEH (line 197) | def insertNEH(self,sequence, position, value):
    method neh (line 203) | def neh(self,tasks, machines_val, tasks_val):
    method read_instances (line 218) | def read_instances(self):
    method evaluate (line 258) | def evaluate(self, code_string):

FILE: examples/user_fssp_gls/prompts.py
  class GetPrompts (line 2) | class GetPrompts():
    method __init__ (line 3) | def __init__(self):
    method get_task (line 13) | def get_task(self):
    method get_func_name (line 16) | def get_func_name(self):
    method get_func_inputs (line 19) | def get_func_inputs(self):
    method get_func_outputs (line 22) | def get_func_outputs(self):
    method get_inout_inf (line 25) | def get_inout_inf(self):
    method get_other_inf (line 28) | def get_other_inf(self):

FILE: examples/user_tsp_gls/gls/gls_evol.py
  function nearest_neighbor (line 9) | def nearest_neighbor(dis_matrix, depot):
  function nearest_neighbor_2End (line 24) | def nearest_neighbor_2End(dis_matrix, depot):
  function local_search (line 45) | def local_search(init_tour, init_cost, D, N, first_improvement=False):
  function route2tour (line 80) | def route2tour(route):
  function tour2route (line 89) | def tour2route(tour):
  function guided_local_search (line 104) | def guided_local_search(coords, edge_weight, nearest_indices,  init_tour...

FILE: examples/user_tsp_gls/gls/gls_operators.py
  function two_opt (line 7) | def two_opt(tour, i, j):
  function two_opt_cost (line 27) | def two_opt_cost(tour, D, i, j):
  function two_opt_a2a (line 41) | def two_opt_a2a(tour, D,N, first_improvement=False, set_delta=0):
  function two_opt_o2a (line 63) | def two_opt_o2a(tour, D, i, first_improvement=False):
  function two_opt_o2a_all (line 86) | def two_opt_o2a_all(tour, D,N, i):
  function relocate (line 105) | def relocate(tour, i, j):
  function relocate_cost (line 120) | def relocate_cost(tour, D, i, j):
  function relocate_o2a (line 140) | def relocate_o2a(tour, D, i, first_improvement=False):
  function relocate_o2a_all (line 163) | def relocate_o2a_all(tour, D,N, i):
  function relocate_a2a (line 180) | def relocate_a2a(tour, D,N, first_improvement=False, set_delta=0):

FILE: examples/user_tsp_gls/gls/gls_run.py
  function solve_instance (line 9) | def solve_instance(n,opt_cost,dis_matrix,coord,time_limit, ite_max, pert...

FILE: examples/user_tsp_gls/gls/gls_test.py
  function nearest_neighbor_2End (line 12) | def nearest_neighbor_2End(dis_matrix, depot):
  function local_search (line 32) | def local_search(init_tour, init_cost, D,N, first_improvement=False):
  function calculate_width (line 77) | def calculate_width(depot , center_of_gravity, node_i, node_j):
  function find_indices (line 91) | def find_indices(Route):
  function route2tour (line 105) | def route2tour(route):
  function tour2route (line 114) | def tour2route(tour):
  function guided_local_search (line 128) | def guided_local_search(coords, edge_weight, nearest_indices,  init_tour...

FILE: examples/user_tsp_gls/prob.py
  class TSPGLS (line 12) | class TSPGLS():
    method __init__ (line 13) | def __init__(self) -> None:
    method tour_cost (line 28) | def tour_cost(self,instance, solution, problem_size):
    method generate_neighborhood_matrix (line 35) | def generate_neighborhood_matrix(self,instance):
    method evaluateGLS (line 47) | def evaluateGLS(self,heuristic):
    method evaluate (line 64) | def evaluate(self, code_string):

FILE: examples/user_tsp_gls/prompts.py
  class GetPrompts (line 1) | class GetPrompts():
    method __init__ (line 2) | def __init__(self):
    method get_task (line 11) | def get_task(self):
    method get_func_name (line 14) | def get_func_name(self):
    method get_func_inputs (line 17) | def get_func_inputs(self):
    method get_func_outputs (line 20) | def get_func_outputs(self):
    method get_inout_inf (line 23) | def get_inout_inf(self):
    method get_other_inf (line 26) | def get_other_inf(self):

FILE: examples/user_tsp_gls/utils/readTSPLib.py
  function read_coordinates (line 8) | def read_coordinates(file_name):
  function create_distance_matrix (line 23) | def create_distance_matrix(coordinates):
  function transform_to_graph (line 40) | def transform_to_graph(distance_matrix):
  function read_instance (line 56) | def read_instance(filename):
  function read_instance_all (line 66) | def read_instance_all(instances_path):

FILE: examples/user_tsp_gls/utils/readTSPRandom.py
  function read_instance_all (line 4) | def read_instance_all(instances_path):

FILE: examples/user_tsp_gls/utils/utils.py
  function tour_to_edge_attribute (line 4) | def tour_to_edge_attribute(G, tour):
  function tour_cost (line 12) | def tour_cost(dis_m, tour):
  function tour_cost_2End (line 19) | def tour_cost_2End(dis_m, tour2End):
  function is_equivalent_tour (line 30) | def is_equivalent_tour(tour_a, tour_b):