SYMBOL INDEX (260 symbols across 25 files)

FILE: evaluate.py
  function create_arg_parser (line 9) | def create_arg_parser():
  function main (line 145) | def main():

FILE: tbad/autoencoder/autoencoder.py
  class Autoencoder (line 13) | class Autoencoder:
    method __init__ (line 14) | def __init__(self, input_dim, hidden_dims=(16,), output_activation='si...
    method build (line 25) | def build(self):
    method compile (line 34) | def compile(self):
    method train (line 38) | def train(self, X_train, y_train, epochs=5, initial_epoch=0, batch_siz...
    method predict (line 66) | def predict(self, X_test):
    method load_weights (line 69) | def load_weights(self, weights_path):
    method _maybe_write_architecture (line 73) | def _maybe_write_architecture(self, log_dir):
  function load_ae_pretrained_models (line 89) | def load_ae_pretrained_models(all_pretrained_models_path):
  function load_pretrained_ae (line 101) | def load_pretrained_ae(pretrained_model_path):
  function _compute_ae_reconstruction_errors (line 120) | def _compute_ae_reconstruction_errors(X, X_reconstructed, loss):
  function compute_ae_reconstruction_errors (line 125) | def compute_ae_reconstruction_errors(coordinates, coordinates_reconstruc...
  function reconstruct_skeletons (line 133) | def reconstruct_skeletons(anomaly_model, trajectories_coordinates):

FILE: tbad/autoencoder/data.py
  class Trajectory (line 12) | class Trajectory:
    method __init__ (line 13) | def __init__(self, trajectory_id, frames, coordinates):
    method __len__ (line 20) | def __len__(self):
    method use_global_features (line 23) | def use_global_features(self, video_resolution, extract_delta=False, u...
    method use_size_features (line 28) | def use_size_features(self, video_resolution):
    method _extract_size_features (line 31) | def _extract_size_features(self, video_resolution):
    method _extract_global_features (line 36) | def _extract_global_features(self, video_resolution, extract_delta=Fal...
    method _extract_bounding_box_centre (line 55) | def _extract_bounding_box_centre(bb):
    method _extract_bounding_box_measurements (line 62) | def _extract_bounding_box_measurements(bb):
    method change_coordinate_system (line 68) | def change_coordinate_system(self, video_resolution, coordinate_system...
    method _from_global_to_image (line 90) | def _from_global_to_image(coordinates, video_resolution):
    method _from_image_to_global (line 97) | def _from_image_to_global(coordinates, video_resolution):
    method _from_image_to_bounding_box (line 104) | def _from_image_to_bounding_box(coordinates, video_resolution, locatio...
    method _from_image_to_top_left_bounding_box (line 117) | def _from_image_to_top_left_bounding_box(coordinates, video_resolution):
    method _from_image_to_centre_bounding_box (line 131) | def _from_image_to_centre_bounding_box(coordinates, video_resolution):
    method is_short (line 153) | def is_short(self, input_length, input_gap, pred_length=0):
    method input_missing_steps (line 158) | def input_missing_steps(self):
  function load_trajectories (line 184) | def load_trajectories(trajectories_path):
  function extract_global_features (line 202) | def extract_global_features(trajectories, video_resolution, extract_delt...
  function extract_size_features (line 210) | def extract_size_features(trajectories, video_resolution):
  function change_coordinate_system (line 217) | def change_coordinate_system(trajectories, video_resolution, coordinate_...
  function split_into_train_and_test (line 224) | def split_into_train_and_test(trajectories, train_ratio=0.8, seed=42):
  function scale_trajectories (line 260) | def scale_trajectories(X, scaler=None, strategy='zero_one'):
  function scale_trajectories_zero_one (line 279) | def scale_trajectories_zero_one(X, scaler=None):
  function scale_trajectories_three_stds (line 299) | def scale_trajectories_three_stds(X, scaler=None):
  function scale_trajectories_robust (line 313) | def scale_trajectories_robust(X, scaler=None):
  function aggregate_autoencoder_data (line 325) | def aggregate_autoencoder_data(trajectories):
  function aggregate_autoencoder_evaluation_data (line 333) | def aggregate_autoencoder_evaluation_data(trajectories):
  function remove_missing_skeletons (line 343) | def remove_missing_skeletons(X, *arrs):
  function compute_ae_reconstruction_errors (line 353) | def compute_ae_reconstruction_errors(X, reconstructed_X, loss):
  function load_anomaly_masks (line 358) | def load_anomaly_masks(anomaly_masks_path):
  function assemble_ground_truth_and_reconstructions (line 369) | def assemble_ground_truth_and_reconstructions(anomaly_masks, trajectory_...
  function quantile_transform_errors (line 399) | def quantile_transform_errors(y_hats):
  function input_trajectories_missing_steps (line 406) | def input_trajectories_missing_steps(trajectories):

FILE: tbad/autoencoder/evaluate.py
  function eval_ae (line 14) | def eval_ae(args):
  function eval_aes (line 76) | def eval_aes(args):

FILE: tbad/autoencoder/train.py
  function train_ae (line 13) | def train_ae(args):

FILE: tbad/combined_model/data.py
  function inverse_scale (line 8) | def inverse_scale(X, scaler):
  function restore_global_coordinate_system (line 18) | def restore_global_coordinate_system(X, video_resolution):
  function restore_original_trajectory (line 26) | def restore_original_trajectory(reconstructed_X_global, reconstructed_X_...
  function write_reconstructed_trajectories (line 41) | def write_reconstructed_trajectories(pretrained_model_path, reconstructe...
  function extract_video_and_skeleton_ids (line 82) | def extract_video_and_skeleton_ids(reconstruction_ids):
  function detect_most_anomalous_or_most_normal_frames (line 93) | def detect_most_anomalous_or_most_normal_frames(reconstruction_errors, a...
  function compute_num_frames_per_video (line 106) | def compute_num_frames_per_video(anomaly_masks):
  function write_predicted_masks (line 115) | def write_predicted_masks(pretrained_model_path, num_frames_per_video, a...
  function compute_worst_mistakes (line 151) | def compute_worst_mistakes(y_true, y_hat, video_ids, error_type='false_p...
  function generate_array_of_frames (line 185) | def generate_array_of_frames(x):
  function write_worst_mistakes (line 195) | def write_worst_mistakes(pretrained_model_path, worst_false_positives, w...
  function clip_trajectories (line 213) | def clip_trajectories(trajectories, video_resolution, margin=0.05):
  function clip_trajectory (line 222) | def clip_trajectory(trajectory, video_resolution, margin=0.05):
  function normalise_errors_by_bounding_box_area (line 250) | def normalise_errors_by_bounding_box_area(errors, X, video_resolution):

FILE: tbad/combined_model/evaluate.py
  function eval_combined_model (line 35) | def eval_combined_model(args):
  function eval_combined_models (line 274) | def eval_combined_models(args):

FILE: tbad/combined_model/fusion.py
  class CombinedEncoderDecoder (line 14) | class CombinedEncoderDecoder:
    method __init__ (line 15) | def __init__(self, input_length, global_input_dim, local_input_dim, re...
    method build (line 42) | def build(self):
    method train (line 168) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 229) | def predict(self, X_test, batch_size=256):
    method reconstruct (line 234) | def reconstruct(self, global_features, local_features):
    method compile (line 246) | def compile(self):
    method load_weights (line 250) | def load_weights(self, weights_path):
    method _construct_input_data (line 254) | def _construct_input_data(self, X_global, X_local):
    method _construct_output_data (line 272) | def _construct_output_data(self, X_global, X_local, y_global=None, y_l...
    method _construct_output_data_alt (line 301) | def _construct_output_data_alt(self, X_out, y_out=None, X_global=None,...
    method _maybe_write_architecture (line 329) | def _maybe_write_architecture(self, log_dir):
  function load_complete_rnn_ae_pretrained_models (line 358) | def load_complete_rnn_ae_pretrained_models(all_pretrained_models_path):
  function load_pretrained_combined_model (line 373) | def load_pretrained_combined_model(pretrained_model_path, message_passin...
  function coordinate_change (line 406) | def coordinate_change(x):

FILE: tbad/combined_model/message_passing.py
  class MessagePassingEncoderDecoder (line 12) | class MessagePassingEncoderDecoder:
    method __init__ (line 13) | def __init__(self, input_length, global_input_dim, local_input_dim, re...
    method build (line 40) | def build(self):
    method train (line 248) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 307) | def predict(self, X_test, batch_size=256):
    method compile (line 312) | def compile(self):
    method load_weights (line 316) | def load_weights(self, weights_path):
    method _construct_input_data (line 319) | def _construct_input_data(self, X_global, X_local):
    method _construct_output_data (line 328) | def _construct_output_data(self, X_global, X_local, y_global=None, y_l...
    method _construct_output_data_alt (line 357) | def _construct_output_data_alt(self, X_out, y_out=None, X_global=None,...
    method _maybe_write_architecture (line 385) | def _maybe_write_architecture(self, log_dir):

FILE: tbad/combined_model/train.py
  function train_combined_model (line 17) | def train_combined_model(args):

FILE: tbad/data.py
  class Trajectory (line 11) | class Trajectory:
    method __init__ (line 12) | def __init__(self, trajectory_id, frames, coordinates):
    method __len__ (line 18) | def __len__(self):
  function load_trajectories (line 22) | def load_trajectories(trajectories_path):
  function is_short_trajectory (line 57) | def is_short_trajectory(trajectory_coordinates, input_length, input_gap=...
  function remove_short_trajectories (line 77) | def remove_short_trajectories(trajectories_coordinates, input_length, in...
  function input_trajectory_missing_steps (line 100) | def input_trajectory_missing_steps(trajectory_coordinates):
  function input_trajectories_missing_steps (line 134) | def input_trajectories_missing_steps(trajectories_coordinates):
  function normalise_trajectory_video_resolution (line 141) | def normalise_trajectory_video_resolution(trajectory_coordinates, video_...
  function normalise_trajectories_video_resolution (line 157) | def normalise_trajectories_video_resolution(trajectories_coordinates, vi...
  function normalise_trajectories (line 178) | def normalise_trajectories(trajectories_coordinates, video_resolution, s...
  function normalise_bounding_box (line 192) | def normalise_bounding_box(trajectory_coordinates, video_resolution):
  function normalise_bounding_boxes (line 210) | def normalise_bounding_boxes(trajectories_coordinates, video_resolution):
  function normalise_joints (line 218) | def normalise_joints(X, min_max_values=None):
  function denormalise_trajectory (line 235) | def denormalise_trajectory(trajectory_coordinates, video_resolution):
  function denormalise_trajectories (line 241) | def denormalise_trajectories(trajectories_coordinates, video_resolution):
  function collect_trajectories (line 264) | def collect_trajectories(trajectory_coordinates, input_length, input_gap...
  function collect_test_trajectories (line 327) | def collect_test_trajectories(trajectory_coordinates, trajectory_frames,...
  function collect_overlapping_trajectories (line 360) | def collect_overlapping_trajectories(trajectory_coordinates, trajectory_...
  function pad_trajectory (line 413) | def pad_trajectory(trajectory_coordinates, padding_length):
  function shuffle_data (line 440) | def shuffle_data(X, y=None, seed=None):
  function input2table (line 461) | def input2table(reconstructed_trajectory):
  function write_trajectories (line 475) | def write_trajectories(write_path, trajectories):
  function load_anomaly_masks (line 497) | def load_anomaly_masks(masks_path, camera_id=None):
  function assemble_trajectories (line 521) | def assemble_trajectories(trajectories_frames, trajectories_coordinates,...
  function detect_anomalous_frames (line 534) | def detect_anomalous_frames(reconstruction_errors, anomaly_threshold):
  function detect_most_anomalous_or_most_normal_frames (line 542) | def detect_most_anomalous_or_most_normal_frames(reconstruction_errors, a...
  function uniquify_reconstruction (line 560) | def uniquify_reconstruction(trajectory_frames, reconstructed_coordinates):
  function uniquify_reconstructions (line 588) | def uniquify_reconstructions(reconstructed_trajectories):
  function discard_steps_from_padded_frames (line 617) | def discard_steps_from_padded_frames(reconstructed_trajectories, origina...
  function denormalise_all_trajectories (line 645) | def denormalise_all_trajectories(reconstructed_trajectories, video_resol...
  function write_all_reconstructed_trajectories (line 673) | def write_all_reconstructed_trajectories(reconstructed_trajectories, wri...
  function extract_input_dim (line 705) | def extract_input_dim(trajectories_coordinates):
  function reverse_trajectories (line 710) | def reverse_trajectories(trajectories_coordinates):
  function collect_skeletons (line 717) | def collect_skeletons(trajectories_frames, trajectories_coordinates):
  function remove_missing_skeletons (line 730) | def remove_missing_skeletons(trajectories_frames, trajectories_coordinat...
  function extract_center_of_mass (line 742) | def extract_center_of_mass(trajectory_coordinates):
  function extract_centre_of_bounding_box (line 760) | def extract_centre_of_bounding_box(trajectory_coordinates, video_resolut...
  function extract_width_height (line 769) | def extract_width_height(trajectory_coordinates, video_resolution):
  function extract_global_features_from_trajectory (line 778) | def extract_global_features_from_trajectory(trajectory_coordinates, vide...
  function extract_global_features (line 786) | def extract_global_features(trajectories_coordinates, video_resolution):
  function concatenate_features (line 794) | def concatenate_features(global_features, local_features):
  function local_to_global_coordinates (line 802) | def local_to_global_coordinates(reconstructed_features, video_resolution):
  function discard_global_features (line 825) | def discard_global_features(reconstructed_features):
  class StdScaler (line 838) | class StdScaler:
    method __init__ (line 839) | def __init__(self, stds=3):
    method fit (line 844) | def fit(self, X):
    method transform (line 848) | def transform(self, X):
    method inverse_transform (line 856) | def inverse_transform(self, X):
  function scale_trajectories_three_stds (line 865) | def scale_trajectories_three_stds(trajectories_coordinates, scaler=None):
  function scale_trajectories_zero_one (line 893) | def scale_trajectories_zero_one(trajectories_coordinates, scaler=None):
  function scale_trajectories (line 929) | def scale_trajectories(trajectories_coordinates, scaler=None, strategy='...
  function inverse_scale_trajectories (line 940) | def inverse_scale_trajectories(reconstructed_trajectories, global_scaler...
  function inverse_single_scale_trajectories (line 953) | def inverse_single_scale_trajectories(reconstructed_trajectories, scaler):
  function _train_test_split_through_time (line 965) | def _train_test_split_through_time(trajectory_id, trajectory_coordinates...
  function train_test_split_through_time (line 990) | def train_test_split_through_time(trajectories_coordinates, input_length...
  function train_test_split_trajectories (line 1013) | def train_test_split_trajectories(trajectories_frames, trajectories_coor...
  function pull_global_features (line 1036) | def pull_global_features(all_reconstructed_features):
  function compute_bounding_boxes_from_global_features (line 1045) | def compute_bounding_boxes_from_global_features(all_reconstructed_featur...
  function compute_bounding_boxes_from_image_features (line 1058) | def compute_bounding_boxes_from_image_features(all_reconstructed_traject...
  function change_coordinate_system (line 1071) | def change_coordinate_system(trajectories_coordinates, video_resolution,...
  function from_image_to_global (line 1095) | def from_image_to_global(trajectories_coordinates, video_resolution):
  function from_global_to_image (line 1104) | def from_global_to_image(trajectories_coordinates, video_resolution):
  function from_global_to_image_all_cameras (line 1113) | def from_global_to_image_all_cameras(all_reconstructed_trajectories, vid...
  function from_image_to_bounding_box (line 1121) | def from_image_to_bounding_box(trajectories_coordinates, video_resolutio...
  function from_image_to_top_left_bounding_box (line 1135) | def from_image_to_top_left_bounding_box(trajectory_coordinates, video_re...
  function from_image_to_centre_bounding_box (line 1149) | def from_image_to_centre_bounding_box(trajectory_coordinates, video_reso...
  function compute_worst_mistakes (line 1166) | def compute_worst_mistakes(y_true, y_hat, video_ids, type='false_positiv...
  function generate_array_of_frames (line 1195) | def generate_array_of_frames(x):
  function write_all_worst_mistakes (line 1205) | def write_all_worst_mistakes(all_pretrained_models_path, worst_false_pos...

FILE: tbad/eval.py
  function eval_ae_models (line 24) | def eval_ae_models(args):
  function eval_rnn_ae_models (line 101) | def eval_rnn_ae_models(args):
  function eval_complete_rnn_ae_models (line 236) | def eval_complete_rnn_ae_models(args):
  function compute_all_cameras_performance_metrics (line 402) | def compute_all_cameras_performance_metrics(args):
  function combine_global_and_local_losses (line 459) | def combine_global_and_local_losses(args):

FILE: tbad/gpu.py
  function configure_gpu_resources (line 10) | def configure_gpu_resources(gpu_ids, gpu_memory_fraction):

FILE: tbad/losses.py
  function mean_squared_error (line 6) | def mean_squared_error(original_trajectory, reconstructed_trajectory):
  function balanced_mean_squared_error (line 14) | def balanced_mean_squared_error(original_trajectory, reconstructed_traje...
  function mean_absolute_error (line 23) | def mean_absolute_error(original_trajectory, reconstructed_trajectory):
  function balanced_mean_absolute_error (line 32) | def balanced_mean_absolute_error(original_trajectory, reconstructed_traj...
  function binary_crossentropy (line 42) | def binary_crossentropy(original_trajectory, reconstructed_trajectory):
  function modified_mean_squared_error (line 51) | def modified_mean_squared_error(y_true, y_pred):
  function modified_mean_squared_error_2 (line 57) | def modified_mean_squared_error_2(y_true, y_pred):
  function modified_mean_squared_error_3 (line 68) | def modified_mean_squared_error_3(y_true, y_pred):
  function modified_mean_absolute_error (line 79) | def modified_mean_absolute_error(y_true, y_pred):
  function modified_balanced_mean_absolute_error (line 90) | def modified_balanced_mean_absolute_error(y_true, y_pred):
  function modified_binary_crossentropy (line 102) | def modified_binary_crossentropy(y_true, y_pred):
  function modified_binary_crossentropy_2 (line 108) | def modified_binary_crossentropy_2(y_true, y_pred):

FILE: tbad/rnn_autoencoder/data.py
  function remove_short_trajectories (line 8) | def remove_short_trajectories(trajectories, input_length, input_gap, pre...
  function aggregate_rnn_autoencoder_data (line 17) | def aggregate_rnn_autoencoder_data(trajectories, input_length, input_gap...
  function _aggregate_rnn_autoencoder_data (line 34) | def _aggregate_rnn_autoencoder_data(coordinates, input_length, input_gap...
  function aggregate_rnn_ae_evaluation_data (line 57) | def aggregate_rnn_ae_evaluation_data(trajectories, input_length, input_g...
  function _aggregate_rnn_ae_evaluation_data (line 70) | def _aggregate_rnn_ae_evaluation_data(trajectory, input_length):
  function compute_rnn_ae_reconstruction_errors (line 89) | def compute_rnn_ae_reconstruction_errors(X, reconstructed_X, loss):
  function summarise_reconstruction_errors (line 102) | def summarise_reconstruction_errors(reconstruction_errors, frames, traje...
  function summarise_reconstruction_errors_per_frame (line 121) | def summarise_reconstruction_errors_per_frame(errors, frames):
  function summarise_reconstruction (line 131) | def summarise_reconstruction(reconstructed_X, frames, trajectory_ids):
  function summarise_reconstruction_per_frame (line 159) | def summarise_reconstruction_per_frame(recs, frames):
  function retrieve_future_skeletons (line 169) | def retrieve_future_skeletons(trajectories_ids, X, pred_length):
  function discard_information_from_padded_frames (line 189) | def discard_information_from_padded_frames(pred_ids, pred_frames, pred_e...

FILE: tbad/rnn_autoencoder/evaluate.py
  function eval_rnn_ae (line 17) | def eval_rnn_ae(args):
  function eval_rnn_aes (line 161) | def eval_rnn_aes(args):

FILE: tbad/rnn_autoencoder/rnn.py
  class RNNEncoderDecoder (line 12) | class RNNEncoderDecoder:
    method __init__ (line 13) | def __init__(self, input_length, input_dim, reconstruction_length, inp...
    method build (line 37) | def build(self):
    method compile (line 103) | def compile(self):
    method load_weights (line 107) | def load_weights(self, weights_path):
    method _create_reconstruction_input_zeros (line 110) | def _create_reconstruction_input_zeros(self, n_examples):
    method _create_prediction_input_zeros (line 116) | def _create_prediction_input_zeros(self, n_examples):
    method _construct_input_data (line 122) | def _construct_input_data(self, X):
    method _construct_output_data (line 133) | def _construct_output_data(self, X, y=None):
    method train (line 147) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 181) | def predict(self, X_test, batch_size=256):
    method eval (line 185) | def eval(self, X_test, batch_size=256):
    method _maybe_write_architecture (line 190) | def _maybe_write_architecture(self, log_dir):
  function load_architecture_specification (line 215) | def load_architecture_specification(model_architecture):
  function model_from_architecture_specification (line 244) | def model_from_architecture_specification(architecture_specification):
  function reconstruct_trajectories (line 248) | def reconstruct_trajectories(anomaly_model, trajectories_coordinates):
  function load_pretrained_rnn_ae (line 258) | def load_pretrained_rnn_ae(pretrained_model_path):

FILE: tbad/rnn_autoencoder/train.py
  function train_rnn_ae (line 16) | def train_rnn_ae(args):
  function produce_data_from_model_type (line 95) | def produce_data_from_model_type(model_type, trajectories, video_resolut...

FILE: tbad/train.py
  function train_ae (line 22) | def train_ae(args):
  function train_rnn_ae (line 89) | def train_rnn_ae(args):
  function train_complete_rnn_ae (line 216) | def train_complete_rnn_ae(args):

FILE: tbad/utils.py
  function select_optimiser (line 14) | def select_optimiser(optimiser, learning_rate):
  function select_loss (line 24) | def select_loss(loss_name):
  function select_cell (line 40) | def select_cell(cell_type, hidden_dim, l1=0.0, l2=0.0):
  function set_up_logging (line 55) | def set_up_logging(camera_id, root_log_dir=None, resume_training=None):
  function resume_training_from_last_epoch (line 67) | def resume_training_from_last_epoch(model, resume_training=None):
  function select_scaler_model (line 76) | def select_scaler_model(scaler_name):

FILE: tbad/visualisation.py
  function compute_bounding_box (line 31) | def compute_bounding_box(keypoints, video_resolution, return_discrete_va...
  function compute_chest_centred_bounding_box (line 66) | def compute_chest_centred_bounding_box(keypoints, video_resolution):
  function insert_anomaly_mask_from_bounding_box (line 104) | def insert_anomaly_mask_from_bounding_box(mask, bounding_box):
  function render_article_main_figure (line 123) | def render_article_main_figure(write_path, frames_path, gt_trajectories_...
  function render_article_main_figure_2 (line 166) | def render_article_main_figure_2(write_path, frames_path, gt_trajectorie...
  function draw_skeleton (line 189) | def draw_skeleton(frame, keypoints, colour, dotted=False):
  function draw_line (line 216) | def draw_line(img, pt1, pt2, color, thickness=1, style='dotted', gap=10):
  function draw_poly (line 241) | def draw_poly(img, pts, color, thickness=1, style='dotted'):
  function draw_rect (line 251) | def draw_rect(img, pt1, pt2, color, thickness=1, style='dotted'):
  function render_trajectories_skeletons (line 256) | def render_trajectories_skeletons(args):
  function _render_trajectories_skeletons (line 296) | def _render_trajectories_skeletons(write_dir, frames_path, gt_trajectori...
  function maybe_create_dir (line 406) | def maybe_create_dir(dir_path):
  function compute_simple_bounding_box (line 414) | def compute_simple_bounding_box(skeleton):
  function render_video_diff_heatmaps (line 425) | def render_video_diff_heatmaps(args):
  function render_video_diff_heatmaps_hasan (line 452) | def render_video_diff_heatmaps_hasan(args):
  function render_video_heatmaps_mpedrnn (line 474) | def render_video_heatmaps_mpedrnn(args):

FILE: train.py
  function create_arg_parser (line 9) | def create_arg_parser():
  function main (line 225) | def main():

FILE: utils/metrics.py
  function frame_level_metrics (line 8) | def frame_level_metrics(anomaly_masks, reconstruction_errors, reconstruc...
  function ground_truth_and_reconstructions (line 30) | def ground_truth_and_reconstructions(anomaly_masks, reconstruction_error...
  function summarise_errors_per_frame (line 53) | def summarise_errors_per_frame(trajectory_errors_per_frame, trajectory_f...
  function compute_reconstruction_errors (line 70) | def compute_reconstruction_errors(trajectories_coordinates, reconstructe...
  function summarise_reconstruction_errors (line 83) | def summarise_reconstruction_errors(reconstruction_errors, trajectories_...
  function discard_errors_from_padded_frames (line 93) | def discard_errors_from_padded_frames(reconstruction_errors, original_tr...

FILE: utils/score_scaling.py
  class ScoreNormalization (line 8) | class ScoreNormalization:
    method __init__ (line 9) | def __init__(self, method="KDE", options=None):
    method fit (line 30) | def fit(self, X):
    method score (line 43) | def score(self, x):
    method get_fit_params_string (line 57) | def get_fit_params_string(self):
    method get_fit_params (line 69) | def get_fit_params(self):
  function normalizing_lstm_autoencoder (line 82) | def normalizing_lstm_autoencoder(training_sample_rate=1):
  function normalizing_3Dconv (line 131) | def normalizing_3Dconv():
  function visualize (line 135) | def visualize(X, X_test, dens_train, dens, plot_title):

FILE: visualise.py
  function create_arg_parser (line 7) | def create_arg_parser():
  function main (line 107) | def main():