SYMBOL INDEX (150 symbols across 14 files)

FILE: cardio/core/ecg_batch.py
  function add_actions (line 63) | def add_actions(actions_dict, template_docstring):
  class EcgBatch (line 94) | class EcgBatch(bf.Batch):
    method __init__ (line 137) | def __init__(self, index, preloaded=None, unique_labels=None):
    method array_of_nones (line 148) | def array_of_nones(self):
    method array_of_dicts (line 153) | def array_of_dicts(self):
    method unique_labels (line 158) | def unique_labels(self):
    method unique_labels (line 163) | def unique_labels(self, val):
    method label_binarizer (line 179) | def label_binarizer(self):
    method _reraise_exceptions (line 184) | def _reraise_exceptions(self, results):
    method _check_2d (line 202) | def _check_2d(signal):
    method load (line 221) | def load(self, src=None, fmt=None, components=None, ann_ext=None, *arg...
    method _load_data (line 261) | def _load_data(self, index, src=None, fmt=None, components=None, *args...
    method _assemble_load (line 304) | def _assemble_load(self, results, *args, **kwargs):
    method _load_labels (line 330) | def _load_labels(self, src):
    method show_ecg (line 364) | def show_ecg(self, index=None, start=0, end=None, annot=None, subplot_...
    method merge (line 428) | def merge(cls, batches, batch_size=None):
    method apply_transform (line 485) | def apply_transform(self, func, *args, src="signal", dst="signal", **k...
    method _init_component (line 516) | def _init_component(self, *args, **kwargs):
    method apply_to_each_channel (line 529) | def apply_to_each_channel(self, index, func, *args, src="signal", dst=...
    method _filter_batch (line 560) | def _filter_batch(self, keep_mask):
    method drop_labels (line 594) | def drop_labels(self, drop_list):
    method keep_labels (line 624) | def keep_labels(self, keep_list):
    method rename_labels (line 654) | def rename_labels(self, rename_dict):
    method binarize_labels (line 672) | def binarize_labels(self):
    method _filter_channels (line 686) | def _filter_channels(self, index, names=None, indices=None, invert_mas...
    method drop_channels (line 738) | def drop_channels(self, names=None, indices=None):
    method keep_channels (line 765) | def keep_channels(self, names=None, indices=None):
    method rename_channels (line 793) | def rename_channels(self, index, rename_dict):
    method reorder_channels (line 814) | def reorder_channels(self, index, new_order):
    method convert_units (line 852) | def convert_units(self, index, new_units):
    method convolve_signals (line 901) | def convolve_signals(self, kernel, padding_mode="edge", axis=-1, **kwa...
    method band_pass_signals (line 931) | def band_pass_signals(self, index, low=None, high=None, axis=-1):
    method drop_short_signals (line 952) | def drop_short_signals(self, min_length, axis=-1):
    method flip_signals (line 972) | def flip_signals(self, index, window_size=None, threshold=0):
    method slice_signals (line 1021) | def slice_signals(self, index, selection_object):
    method _pad_signal (line 1039) | def _pad_signal(signal, length, pad_value):
    method _get_segmentation_arg (line 1062) | def _get_segmentation_arg(arg, arg_name, target):
    method _check_segmentation_args (line 1096) | def _check_segmentation_args(signal, target, length, arg, arg_name):
    method split_signals (line 1138) | def split_signals(self, index, length, step, pad_value=0):
    method random_split_signals (line 1186) | def random_split_signals(self, index, length, n_segments, pad_value=0):
    method unstack_signals (line 1234) | def unstack_signals(self):
    method _safe_fs_resample (line 1282) | def _safe_fs_resample(self, index, fs):
    method resample_signals (line 1306) | def resample_signals(self, index, fs):
    method random_resample_signals (line 1334) | def random_resample_signals(self, index, distr, **kwargs):
    method spectrogram (line 1375) | def spectrogram(self, index, *args, src="signal", dst="signal", **kwar...
    method standardize (line 1409) | def standardize(self, index, axis=None, eps=1e-10, *, src="signal", ds...
    method calc_ecg_parameters (line 1438) | def calc_ecg_parameters(self, index, src=None):

FILE: cardio/core/ecg_batch_tools.py
  function check_signames (line 43) | def check_signames(signame, nsig):
  function check_units (line 69) | def check_units(units, nsig):
  function unify_sex (line 92) | def unify_sex(sex):
  function load_wfdb (line 115) | def load_wfdb(path, components, *args, **kwargs):
  function load_dicom (line 163) | def load_dicom(path, components, *args, **kwargs):
  function load_edf (line 253) | def load_edf(path, components, *args, **kwargs):
  function load_wav (line 304) | def load_wav(path, components, *args, **kwargs):
  function load_xml (line 346) | def load_xml(path, components, xml_type, *args, **kwargs):
  function load_xml_schiller (line 376) | def load_xml_schiller(path, components, *args, **kwargs):  # pylint: dis...
  function split_signals (line 444) | def split_signals(signals, length, step):
  function random_split_signals (line 468) | def random_split_signals(signals, length, n_segments):
  function resample_signals (line 494) | def resample_signals(signals, new_length):
  function convolve_signals (line 519) | def convolve_signals(signals, kernel, padding_mode="edge", axis=-1, **kw...
  function band_pass_signals (line 566) | def band_pass_signals(signals, freq, low=None, high=None, axis=-1):
  function find_intervals_borders (line 608) | def find_intervals_borders(hmm_annotation, inter_val):
  function find_maxes (line 642) | def find_maxes(signal, starts, ends):
  function calc_hr (line 671) | def calc_hr(signal, hmm_annotation, fs, r_state=R_STATE):
  function calc_pq (line 701) | def calc_pq(hmm_annotation, fs, p_states=P_STATES, q_state=Q_STATE, r_st...
  function calc_qt (line 762) | def calc_qt(hmm_annotation, fs, t_states=T_STATES, q_state=Q_STATE, r_st...
  function calc_qrs (line 823) | def calc_qrs(hmm_annotation, fs, s_state=S_STATE, q_state=Q_STATE, r_sta...

FILE: cardio/core/ecg_dataset.py
  class EcgDataset (line 7) | class EcgDataset(bf.Dataset):
    method __init__ (line 33) | def __init__(self, index=None, batch_class=EcgBatch, preloaded=None, i...

FILE: cardio/core/kernels.py
  function _check_kernel_size (line 6) | def _check_kernel_size(size):
  function gaussian (line 12) | def gaussian(size, sigma=None):

FILE: cardio/core/utils.py
  function get_units_conversion_factor (line 13) | def get_units_conversion_factor(old_units, new_units):
  function partialmethod (line 36) | def partialmethod(func, *frozen_args, **frozen_kwargs):
  class LabelBinarizer (line 61) | class LabelBinarizer(LB):
    method transform (line 69) | def transform(self, y):
    method inverse_transform (line 89) | def inverse_transform(self, Y, threshold=None):

FILE: cardio/models/dirichlet_model/dirichlet_model.py
  function concatenate_ecg_batch (line 12) | def concatenate_ecg_batch(batch, model, return_targets=True):
  class DirichletModelBase (line 47) | class DirichletModelBase(TFModel):
    method _build (line 67) | def _build(self, *args, **kwargs):  # pylint: disable=too-many-locals
  class DirichletModel (line 127) | class DirichletModel(DirichletModelBase):
    method _get_dirichlet_mixture_stats (line 139) | def _get_dirichlet_mixture_stats(alpha):
    method train (line 163) | def train(self, fetches=None, feed_dict=None, use_lock=False, *args, *...
    method predict (line 188) | def predict(self, fetches=None, feed_dict=None, split_indices=None):  ...

FILE: cardio/models/fft_model/fft_model.py
  class FFTModel (line 14) | class FFTModel(KerasModel):#pylint: disable=too-many-locals
    method _build (line 19) | def _build(self, **kwargs):#pylint: disable=too-many-locals

FILE: cardio/models/hmm/hmm.py
  function prepare_hmm_input (line 9) | def prepare_hmm_input(batch, model, features, channel_ix):
  class HMModel (line 42) | class HMModel(BaseModel):
    method __init__ (line 50) | def __init__(self, *args, **kwargs):
    method build (line 54) | def build(self, *args, **kwargs):
    method save (line 76) | def save(self, path, *args, **kwargs):  # pylint: disable=arguments-di...
    method load (line 91) | def load(self, path, *args, **kwargs):  # pylint: disable=arguments-di...
    method train (line 103) | def train(self, *args, **kwargs):
    method predict (line 124) | def predict(self, *args, **kwargs):

FILE: cardio/models/keras_custom_objects.py
  class RFFT (line 9) | class RFFT(Layer):
    method rfft (line 21) | def rfft(self, x, fft_fn):
    method call (line 46) | def call(self, x):
    method compute_output_shape (line 52) | def compute_output_shape(self, input_shape):
  class Crop (line 61) | class Crop(Layer):
    method __init__ (line 85) | def __init__(self, begin, size, *agrs, **kwargs):
    method call (line 90) | def call(self, x):
    method compute_output_shape (line 96) | def compute_output_shape(self, input_shape):
  class Inception2D (line 103) | class Inception2D(Layer):#pylint: disable=too-many-instance-attributes
    method __init__ (line 139) | def __init__(self, base_dim, nb_filters,#pylint: disable=too-many-argu...
    method build (line 150) | def build(self, input_shape):
    method call (line 178) | def call(self, x):
    method compute_output_shape (line 195) | def compute_output_shape(self, input_shape):

FILE: cardio/models/layers.py
  function conv1d_block (line 6) | def conv1d_block(scope, input_layer, is_training, filters, kernel_size, ...
  function resnet1d_block (line 43) | def resnet1d_block(scope, input_layer, is_training, filters, kernel_size...

FILE: cardio/models/metrics.py
  function get_class_prob (line 11) | def get_class_prob(predictions_dict):
  function get_labels (line 34) | def get_labels(predictions_list):
  function get_probs (line 59) | def get_probs(predictions_list):
  function f1_score (line 84) | def f1_score(predictions_list, labels=None, average="macro", **kwargs):
  function auc (line 108) | def auc(predictions_list, average="macro", **kwargs):
  function classification_report (line 129) | def classification_report(predictions_list, **kwargs):
  function confusion_matrix (line 148) | def confusion_matrix(predictions_list, margins=True, **kwargs):
  function calculate_metrics (line 180) | def calculate_metrics(metrics_list, predictions_list):

FILE: cardio/pipelines/pipelines.py
  function dirichlet_train_pipeline (line 15) | def dirichlet_train_pipeline(labels_path, batch_size=256, n_epochs=1000,...
  function dirichlet_predict_pipeline (line 66) | def dirichlet_predict_pipeline(model_path, batch_size=100, gpu_options=N...
  function hmm_preprocessing_pipeline (line 108) | def hmm_preprocessing_pipeline(batch_size=20, features="hmm_features"):
  function hmm_train_pipeline (line 150) | def hmm_train_pipeline(hmm_preprocessed, batch_size=20, features="hmm_fe...
  function hmm_predict_pipeline (line 266) | def hmm_predict_pipeline(model_path, batch_size=20, features="hmm_featur...

FILE: cardio/tests/test_ecgbatch.py
  function setup_module_load (line 14) | def setup_module_load(request):
  function setup_class_methods (line 40) | def setup_class_methods(request):
  function setup_class_dataset (line 58) | def setup_class_dataset(request):
  function setup_class_pipeline (line 74) | def setup_class_pipeline(request):
  class TestEcgBatchLoad (line 94) | class TestEcgBatchLoad():
    method test_load_wfdb (line 99) | def test_load_wfdb(self, setup_module_load): #pylint: disable=redefine...
    method test_load_wfdb_annotation (line 120) | def test_load_wfdb_annotation(self, setup_module_load): #pylint: disab...
    method test_load_dicom (line 144) | def test_load_dicom(self, setup_module_load): #pylint: disable=redefin...
    method test_load_edf (line 166) | def test_load_edf(self, setup_module_load): #pylint: disable=redefined...
    method test_load_wav (line 188) | def test_load_wav(self, setup_module_load): #pylint: disable=redefined...
  class TestEcgBatchSingleMethods (line 210) | class TestEcgBatchSingleMethods:
    method tets_drop_short_signal (line 215) | def tets_drop_short_signal(self, setup_class_methods): #pylint: disabl...
    method test_split_signals (line 231) | def test_split_signals(self, setup_class_methods): #pylint: disable=re...
    method test_resample_signals (line 241) | def test_resample_signals(self, setup_class_methods):#pylint: disable=...
    method test_band_pass_signals (line 252) | def test_band_pass_signals(self, setup_class_methods): #pylint: disabl...
    method test_flip_signals (line 263) | def test_flip_signals(self, setup_class_methods): #pylint: disable=red...
  class TestEcgBatchDataset (line 274) | class TestEcgBatchDataset:
    method test_cv_split (line 279) | def test_cv_split(self, setup_class_dataset): #pylint: disable=redefin...
    method test_pipeline_load (line 298) | def test_pipeline_load(self, setup_class_dataset, setup_module_load): ...
  class TestEcgBatchPipelineMethods (line 327) | class TestEcgBatchPipelineMethods:
    method test_pipeline_1 (line 332) | def test_pipeline_1(self, setup_class_pipeline): #pylint: disable=rede...
    method test_pipeline_2 (line 348) | def test_pipeline_2(self, setup_class_pipeline): #pylint: disable=rede...
    method test_get_signal_with_meta (line 366) | def test_get_signal_with_meta(self, setup_module_load): #pylint: disab...
  class TestIntervalBatchTools (line 390) | class TestIntervalBatchTools:
    method test_find_interval_borders (line 394) | def test_find_interval_borders(self): #pylint: disable=redefined-outer...
    method test_find_maxes (line 419) | def test_find_maxes(self): #pylint: disable=redefined-outer-name
    method test_calc_hr (line 452) | def test_calc_hr(self):

FILE: tutorials/pn2017_data_to_wfdb_format.py
  function check_format (line 9) | def check_format(line_values):
  function main (line 25) | def main():