SYMBOL INDEX (119 symbols across 25 files)

FILE: docs/conf.py
  class Mock (line 228) | class Mock(object):
    method __init__ (line 229) | def __init__(self, *args, **kwargs):
    method __call__ (line 232) | def __call__(self, *args, **kwargs):
    method __getattr__ (line 236) | def __getattr__(cls, name):

FILE: poretools/Event.py
  class Event (line 1) | class Event(object):
    method __init__ (line 8) | def __init__(self, row):
    method __repr__ (line 67) | def __repr__(self):

FILE: poretools/Fast5File.py
  class Fast5DirHandler (line 47) | class Fast5DirHandler(object):
    method __init__ (line 51) | def __init__(self, dir):
    method process (line 62) | def process(self, event):
    method on_created (line 65) | def on_created(self, event):
    method clear (line 68) | def clear(self):
    method __iter__ (line 71) | def __iter__(self):
    method next (line 74) | def next(self):
  class Fast5FileSet (line 81) | class Fast5FileSet(object):
    method __init__ (line 83) | def __init__(self, fileset, group=0):
    method get_num_files (line 93) | def get_num_files(self):
    method __iter__ (line 101) | def __iter__(self):
    method next (line 104) | def next(self):
    method _extract_fast5_files (line 113) | def _extract_fast5_files(self):
  class TarballFileIterator (line 158) | class TarballFileIterator:
    method _fast5_filename_filter (line 159) | def _fast5_filename_filter(self, filename):
    method __init__ (line 162) | def __init__(self, tarball):
    method __del__ (line 166) | def __del__(self):
    method __iter__ (line 169) | def __iter__(self):
    method next (line 172) | def next(self):
    method __len__ (line 182) | def __len__(self):
  class Fast5File (line 187) | class Fast5File(object):
    method __init__ (line 189) | def __init__(self, filename, group=0):
    method __del__ (line 213) | def __del__(self):
    method open (line 220) | def open(self):
    method guess_version (line 231) | def guess_version(self):
    method close (line 256) | def close(self):
    method has_2D (line 264) | def has_2D(self):
    method get_fastqs (line 277) | def get_fastqs(self, choice):
    method get_fastas (line 305) | def get_fastas(self, choice):
    method get_fastas_dict (line 335) | def get_fastas_dict(self):
    method get_fastq (line 346) | def get_fastq(self):
    method get_fasta (line 366) | def get_fasta(self):
    method get_template_events (line 381) | def get_template_events(self):
    method get_complement_events (line 391) | def get_complement_events(self):
    method get_pre_basecalled_events (line 401) | def get_pre_basecalled_events(self):
    method get_exp_start_time (line 415) | def get_exp_start_time(self):
    method get_channel_number (line 436) | def get_channel_number(self):
    method find_read_number_block_link (line 455) | def find_read_number_block_link(self):
    method hdf_internal_error (line 480) | def hdf_internal_error(self,reason):
    method find_read_number_block_fixed_raw (line 489) | def find_read_number_block_fixed_raw(self):
    method find_read_number_block (line 513) | def find_read_number_block(self):
    method find_event_timing_block (line 527) | def find_event_timing_block(self):
    method get_read_number (line 537) | def get_read_number(self):
    method get_start_mux (line 549) | def get_start_mux(self):
    method get_duration (line 561) | def get_duration(self):
    method get_start_time (line 581) | def get_start_time(self):
    method get_end_time (line 602) | def get_end_time(self):
    method get_version_name (line 615) | def get_version_name(self):
    method get_minknow_version (line 628) | def get_minknow_version(self):
    method get_run_id (line 641) | def get_run_id(self):
    method get_heatsink_temp (line 654) | def get_heatsink_temp(self):
    method get_asic_temp (line 667) | def get_asic_temp(self):
    method get_flowcell_id (line 680) | def get_flowcell_id(self):
    method get_host_name (line 698) | def get_host_name(self):
    method get_run_purpose (line 708) | def get_run_purpose(self):
    method get_asic_id (line 721) | def get_asic_id(self):
    method get_host_name (line 738) | def get_host_name(self):
    method get_device_id (line 755) | def get_device_id(self):
    method get_sample_name (line 769) | def get_sample_name(self):
    method get_sample_frequency (line 783) | def get_sample_frequency(self):
    method get_script_name (line 797) | def get_script_name(self):
    method get_template_events_count (line 806) | def get_template_events_count(self):
    method get_complement_events_count (line 816) | def get_complement_events_count(self):
    method is_high_quality (line 826) | def is_high_quality(self):
    method get_best_type (line 833) | def get_best_type(self):
    method _extract_fastqs_from_fast5 (line 861) | def _extract_fastqs_from_fast5(self):
    method _extract_fastas_from_fast5 (line 874) | def _extract_fastas_from_fast5(self):
    method _extract_template_events (line 887) | def _extract_template_events(self):
    method _extract_complement_events (line 897) | def _extract_complement_events(self):
    method _extract_pre_basecalled_events (line 907) | def _extract_pre_basecalled_events(self):
    method _get_metadata (line 920) | def _get_metadata(self):

FILE: poretools/combine.py
  function run (line 10) | def run(parser, args):

FILE: poretools/events.py
  function run (line 3) | def run(parser, args):

FILE: poretools/fasta.py
  function run (line 4) | def run(parser, args):

FILE: poretools/fastq.py
  function run (line 4) | def run(parser, args):

FILE: poretools/formats.py
  class Fastq (line 1) | class Fastq(object):
    method __init__ (line 2) | def __init__(self, s):
    method parse (line 6) | def parse(self):
    method __repr__ (line 9) | def __repr__(self):
    method est_error_rate (line 12) | def est_error_rate(self):
  class Fasta (line 27) | class Fasta(object):
    method __init__ (line 28) | def __init__(self, s):
    method parse (line 32) | def parse(self):
    method __repr__ (line 36) | def __repr__(self):

FILE: poretools/hist.py
  function plot_hist (line 15) | def plot_hist(sizes, args):
  function run (line 31) | def run(parser, args):

FILE: poretools/index.py
  function run (line 18) | def run(parser, args):

FILE: poretools/metadata.py
  function run (line 3) | def run(parser, args):

FILE: poretools/nucdist.py
  function run (line 4) | def run(parser, args):

FILE: poretools/occupancy.py
  function minion_flowcell_layout (line 11) | def minion_flowcell_layout():
  function plot_performance (line 24) | def plot_performance(parser, args, pore_measure):
  function run (line 53) | def run(parser, args):

FILE: poretools/organise.py
  function run (line 13) | def run(parser, args):

FILE: poretools/poretools_main.py
  function run_subtool (line 14) | def run_subtool(parser, args):
  class ArgumentParserWithDefaults (line 57) | class ArgumentParserWithDefaults(argparse.ArgumentParser):
    method __init__ (line 58) | def __init__(self, *args, **kwargs):
  function main (line 64) | def main():

FILE: poretools/qual_v_pos.py
  function run (line 11) | def run(parser, args):

FILE: poretools/qualdist.py
  function run (line 4) | def run(parser, args):

FILE: poretools/readstats.py
  function run (line 3) | def run(parser, args):

FILE: poretools/squiggle.py
  function plot_squiggle (line 15) | def plot_squiggle(args, filename, start_times, mean_signals):
  function do_plot_squiggle (line 52) | def do_plot_squiggle(args, fast5):
  function run (line 69) | def run(parser, args):

FILE: poretools/statistics.py
  function mean (line 1) | def mean(l):
  function median (line 13) | def median(l):
  function NX (line 29) | def NX(l, x=[25,50,75]):

FILE: poretools/stats.py
  function run (line 7) | def run(parser, args):

FILE: poretools/tabular.py
  function run (line 3) | def run(parser, args):

FILE: poretools/times.py
  function run (line 9) | def run(parser, args):

FILE: poretools/winner.py
  function run (line 9) | def run(parser, args):

FILE: poretools/yield_plot.py
  function plot_collectors_curve (line 15) | def plot_collectors_curve(args, start_times, read_lengths):
  function run (line 65) | def run(parser, args):