SYMBOL INDEX (914 symbols across 116 files)

FILE: apop.m4.h
  type apop_name (line 61) | typedef struct{
  type apop_data (line 72) | typedef struct apop_data{
  type apop_settings_type (line 85) | typedef struct {
  type apop_model (line 94) | typedef struct apop_model apop_model;
  type apop_model (line 98) | struct apop_model{
  type apop_opts_type (line 118) | typedef struct{
  type apop_model (line 514) | typedef apop_model *(*apop_update_type)(apop_data *, apop_model* , apop_...
  type apop_mle_settings (line 1191) | typedef struct{
  type apop_lm_settings (line 1243) | typedef struct {
  type apop_parts_wanted_settings (line 1274) | typedef struct {
  type apop_cdf_settings (line 1284) | typedef struct {
  type apop_pm_settings (line 1293) | typedef struct {
  type apop_pmf_settings (line 1302) | typedef struct {
  type apop_kernel_density_settings (line 1312) | typedef struct{
  type apop_mcmc_settings (line 1326) | struct apop_mcmc_settings
  type apop_mcmc_proposal_s (line 1341) | typedef struct apop_mcmc_proposal_s {
  type apop_mcmc_settings (line 1368) | typedef struct apop_mcmc_settings {
  type loess_struct (line 1415) | struct loess_struct {
  type apop_loess_settings (line 1466) | typedef struct {
  type POINT (line 1565) | typedef struct point {    /* a point in the x,y plane */
  type arms_state (line 1574) | typedef struct {  /* attributes of the entire rejection envelope */
  type apop_arms_settings (line 1593) | typedef struct {
  type apop_cross_settings (line 1613) | typedef struct {
  type apop_coordinate_transform_settings (line 1619) | typedef struct {
  type apop_dconstrain_settings (line 1629) | typedef struct {
  type apop_composition_settings (line 1642) | typedef struct {
  type apop_mixture_settings (line 1652) | typedef struct {

FILE: apop_arms.c
  function distract_doxygen_arms (line 75) | void distract_doxygen_arms(){/*Doxygen gets thrown by the settings macro...
  function apop_arms_draw (line 89) | int apop_arms_draw (double *out, gsl_rng *r, apop_model *m){
  function initial (line 120) | int initial (apop_arms_settings* params,  arms_state *env){
  function invert (line 180) | void invert(double prob, arms_state *env, POINT *p){
  function test (line 243) | int test(arms_state *env, POINT *p, apop_arms_settings *params, gsl_rng ...
  function update (line 324) | int update(arms_state *env, POINT *p, apop_arms_settings *params){
  function cumulate (line 391) | static void cumulate(arms_state *env){
  function meet (line 417) | int meet (POINT *q, arms_state *env, apop_arms_settings *params){
  function area (line 500) | double area(POINT *q){
  function expshift (line 513) | double expshift(double y, double y0) {
  function logshift (line 521) | double logshift(double y, double y0){
  function perfunc (line 526) | double perfunc(apop_arms_settings *params, double x){

FILE: apop_asst.m4.c
  function apop_tack_on (line 19) | static void apop_tack_on(char **in, char *addme){
  function APOP_VAR_HEAD (line 98) | APOP_VAR_HEAD char *apop_text_paste(apop_data const *strings, char *betw...
  function apop_generalized_harmonic (line 138) | long double apop_generalized_harmonic(int N, double s){
  function apop_system (line 188) | int apop_system(const char *fmt, ...){
  function count_parens (line 199) | static int count_parens(const char *string){
  function APOP_VAR_HEAD (line 247) | APOP_VAR_HEAD int  apop_regex(const char *string, const char* regex, apo...
  function apop_rng_GHgB3 (line 298) | double apop_rng_GHgB3(gsl_rng * r, double* a){
  function apop_model (line 323) | apop_model *apop_beta_from_mean_var(double m, double v){
  function gsl_rng (line 356) | gsl_rng *apop_rng_get_thread_base(int thread){
  function APOP_VAR_HEAD (line 405) | APOP_VAR_HEAD apop_data *apop_model_draws(apop_model *model, int count, ...

FILE: apop_bootstrap.m4.c
  function gsl_rng (line 18) | gsl_rng *apop_rng_alloc(int seed){
  function apop_data (line 50) | apop_data * apop_jackknife_cov(apop_data *in, apop_model *model){
  function APOP_VAR_HEAD (line 122) | APOP_VAR_HEAD apop_data * apop_bootstrap_cov(apop_data * data, apop_mode...

FILE: apop_conversions.m4.c
  function xprintf (line 15) | void xprintf(char **q, char *format, ...){
  function APOP_VAR_HEAD (line 38) | APOP_VAR_HEAD gsl_vector * apop_array_to_vector(double *in, int size){
  function APOP_VAR_HEAD (line 62) | APOP_VAR_HEAD gsl_matrix * apop_vector_to_matrix(const gsl_vector *in, c...
  function find_cat_index (line 76) | static int find_cat_index(char **d, char * r, int start_from, int size){
  function APOP_VAR_HEAD (line 111) | APOP_VAR_HEAD apop_data *apop_db_to_crosstab(char const*tabname, char co...
  function apop_crosstab_to_db (line 192) | void apop_crosstab_to_db(apop_data *in,  char *tabname, char *row_col_name,
  function APOP_VAR_HEAD (line 261) | APOP_VAR_HEAD apop_data * apop_data_rank_compress (apop_data *in, int mi...
  function apop_data (line 286) | apop_data *apop_data_rank_expand (apop_data *in){
  function gsl_vector (line 310) | gsl_vector *apop_vector_copy(const gsl_vector *in){
  function gsl_matrix (line 328) | gsl_matrix *apop_matrix_copy(const gsl_matrix *in){
  function prep_text_reading (line 414) | static int prep_text_reading(char const *text_file, FILE **infile){
  type line_parse_t (line 431) | typedef struct {int ct; int eof;} line_parse_t;
  function line_parse_t (line 434) | static line_parse_t parse_a_fixed_line(FILE *infile, apop_data *fn, int ...
  type apop_char_info (line 468) | typedef struct{
  function get_next (line 474) | static int get_next(char *buffer, size_t *ptr, FILE *infile){
  function apop_char_info (line 485) | static apop_char_info parse_next_char(char *buffer, size_t *ptr, FILE *f...
  function line_parse_t (line 503) | static line_parse_t parse_a_line(FILE *infile, char *buffer, size_t *ptr...
  function get_field_names (line 566) | static void get_field_names(int has_col_names, char **field_names, FILE ...
  function APOP_VAR_HEAD (line 600) | APOP_VAR_HEAD apop_data * apop_text_to_data(char const*text_file, int ha...
  function APOP_VAR_HEAD (line 691) | APOP_VAR_HEAD void apop_data_unpack(const gsl_vector *in, apop_data *d, ...
  function sizecount (line 728) | static size_t sizecount(const apop_data *in, bool all_pp, bool use_info_...
  function APOP_VAR_HEAD (line 762) | APOP_VAR_HEAD gsl_vector * apop_data_pack(const apop_data *in, gsl_vecto...
  function apop_data (line 859) | apop_data *apop_data_fill_base(apop_data *in, double ap[]){
  function gsl_vector (line 891) | gsl_vector *apop_vector_fill_base(gsl_vector *in, double ap[]){
  function apop_data (line 923) | apop_data *apop_text_fill_base(apop_data *data, char* text[]){
  function tab_create_mysql (line 951) | static int tab_create_mysql(char *tabname, int has_row_names, apop_data ...
  function tab_create_sqlite (line 968) | static int tab_create_sqlite(char *tabname, int has_row_names, apop_data...
  function line_to_insert (line 1021) | static void line_to_insert(line_parse_t L, apop_data const*addme, char c...
  function apop_use_sqlite_prepared_statements (line 1049) | int apop_use_sqlite_prepared_statements(size_t col_ct){
  function apop_prepare_prepared_statements (line 1059) | int apop_prepare_prepared_statements(char const *tabname, size_t col_ct,...
  function APOP_VAR_HEAD (line 1121) | APOP_VAR_HEAD int apop_text_to_db(char const *text_file, char *tabname, ...

FILE: apop_data.m4.c
  function APOP_VAR_HEAD (line 32) | APOP_VAR_HEAD apop_data * apop_data_alloc(const size_t size1, const size...
  function APOP_VAR_HEAD (line 77) | APOP_VAR_HEAD apop_data * apop_data_calloc(const size_t size1, const siz...
  function apop_text_blank (line 113) | static void apop_text_blank(apop_data *in, const size_t row, const size_...
  function apop_text_free (line 127) | void apop_text_free(char ***freeme, int rows, int cols){
  function apop_data_free_base (line 151) | char apop_data_free_base(apop_data *freeme){
  function apop_data_memcpy (line 203) | void apop_data_memcpy(apop_data *out, const apop_data *in){
  function apop_data (line 283) | apop_data *apop_data_copy(const apop_data *in){
  function APOP_VAR_HEAD (line 352) | APOP_VAR_HEAD apop_data *apop_data_stack(apop_data *m1, apop_data * m2, ...
  function apop_data (line 459) | apop_data ** apop_data_split(apop_data *in, int splitpoint, char r_or_c){
  function apop_name_rm_columns (line 627) | static void apop_name_rm_columns(apop_name *n, int *drop){
  function gsl_matrix (line 645) | static gsl_matrix *apop_matrix_rm_columns(gsl_matrix *in, int *drop){
  function apop_data_rm_columns (line 677) | void apop_data_rm_columns(apop_data *d, int *drop){
  function apop_data (line 719) | apop_data* apop_data_prune_columns_base(apop_data *d, char **colnames){
  function APOP_VAR_HEAD (line 766) | APOP_VAR_HEAD double * apop_data_ptr(apop_data *data, int row, int col, ...
  function APOP_VAR_HEAD (line 814) | APOP_VAR_HEAD double apop_data_get(const apop_data *data, size_t row, in...
  function apop_gsl_error_for_set (line 852) | void apop_gsl_error_for_set(const char *reason, const char *file, int li...
  function APOP_VAR_HEAD (line 881) | APOP_VAR_HEAD int apop_data_set(apop_data *data, size_t row, int col, co...
  function apop_data_add_named_elmt (line 944) | void apop_data_add_named_elmt(apop_data *d, char *name, double val){
  function apop_data_add_names_base (line 955) | void apop_data_add_names_base(apop_data *d, const char type, char const ...
  function apop_text_set (line 995) | int apop_text_set(apop_data *in, const size_t row, const size_t col, con...
  function apop_data (line 1023) | apop_data * apop_text_alloc(apop_data *in, const size_t row, const size_...
  function APOP_VAR_HEAD (line 1111) | APOP_VAR_HEAD apop_data * apop_data_transpose(apop_data *in, char transp...
  function gsl_matrix (line 1212) | gsl_matrix * apop_matrix_realloc(gsl_matrix *m, size_t newheight, size_t...
  function gsl_vector (line 1262) | gsl_vector * apop_vector_realloc(gsl_vector *v, size_t newheight){
  function APOP_VAR_HEAD (line 1290) | APOP_VAR_HEAD apop_data * apop_data_get_page(const apop_data * data, con...
  function apop_data (line 1317) | apop_data * apop_data_add_page(apop_data * dataset, apop_data *newpage, ...
  function APOP_VAR_HEAD (line 1357) | APOP_VAR_HEAD apop_data* apop_data_rm_page(apop_data * data, const char ...
  function APOP_VAR_HEAD (line 1413) | APOP_VAR_HEAD apop_data* apop_data_rm_rows(apop_data *in, int *drop, apo...

FILE: apop_db.m4.c
  function get_db_type (line 40) | static void get_db_type(){
  function apop_db_open (line 85) | int apop_db_open(char const *filename){
  type tab_exists_t (line 102) | typedef struct {
  function tab_exists_callback (line 108) | static int tab_exists_callback(void *in, int argc, char **argv, char **w...
  function APOP_VAR_HEAD (line 130) | APOP_VAR_HEAD int apop_table_exists(char const *name, char remove){
  function apop_data (line 251) | apop_data * apop_query_to_text(const char * fmt, ...){
  function db_to_table (line 267) | static int db_to_table(void *qinfo, int argc, char **argv, char **column){
  function apop_data (line 320) | apop_data * apop_query_to_data(const char * fmt, ...){
  function gsl_vector (line 364) | gsl_vector * apop_query_to_vector(const char * fmt, ...){
  function apop_query_to_float (line 406) | double apop_query_to_float(const char * fmt, ...){
  function apop_data (line 453) | apop_data * apop_query_to_mixed_data(const char *typelist, const char * ...
  function qxprintf (line 475) | void qxprintf(char **q, char *format, ...){
  function add_a_number (line 484) | static void add_a_number (char **q, char *comma, double v){
  function run_prepared_statements (line 496) | static int run_prepared_statements(apop_data const *set, sqlite3_stmt *p...
  function apop_data_to_db (line 542) | int apop_data_to_db(const apop_data *set, const char *tabname, const cha...

FILE: apop_db_mysql.c
  function apop_mysql_db_open (line 23) | static int apop_mysql_db_open(char const *in){
  function apop_mysql_db_close (line 34) | static void apop_mysql_db_close(int ignoreme){
  function apop_mysql_query (line 47) | static double apop_mysql_query(char *query){
  function apop_mysql_table_exists (line 54) | static double apop_mysql_table_exists(char const *table, int delme){
  function get_name_row (line 78) | static int get_name_row(unsigned int *num_fields, MYSQL_FIELD *fields){
  function apop_mysql_query_to_float (line 177) | static double apop_mysql_query_to_float(char *query){
  function apop_data (line 193) | apop_data* apop_mysql_mixed_query(char const *intypes, char const *query){

FILE: apop_db_sqlite.c
  type StdDevCtx (line 14) | typedef struct StdDevCtx StdDevCtx;
  type StdDevCtx (line 15) | struct StdDevCtx {
  function twoStep (line 24) | static void twoStep(sqlite3_context *context, int argc, sqlite3_value **...
  function threeStep (line 38) | static void threeStep(sqlite3_context *context, int argc, sqlite3_value ...
  function fourStep (line 54) | static void fourStep(sqlite3_context *context, int argc, sqlite3_value *...
  function stdDevFinalizePop (line 67) | static void stdDevFinalizePop(sqlite3_context *context){
  function varFinalizePop (line 75) | static void varFinalizePop(sqlite3_context *context){
  function stdDevFinalize (line 83) | static void stdDevFinalize(sqlite3_context *context){
  function varFinalize (line 93) | static void varFinalize(sqlite3_context *context){
  function skewFinalize (line 103) | static void skewFinalize(sqlite3_context *context){
  function kurtFinalize (line 114) | static void kurtFinalize(sqlite3_context *context){
  function powFn (line 130) | static void powFn(sqlite3_context *context, int argc, sqlite3_value **ar...
  function rngFn (line 136) | static void rngFn(sqlite3_context *context, int argc, sqlite3_value **ar...
  function sqfn (line 145) | sqfn(sqrt) sqfn(exp) sqfn(log) sqfn(log10) sqfn(sin)

FILE: apop_fexact.c
  type Rboolean (line 24) | typedef enum { FALSE = 0, TRUE /*, MAYBE */ } Rboolean;
  function imax2 (line 25) | int imax2(int a, int b){return (a>b) ? a : b;}
  function imin2 (line 26) | int imin2(int a, int b){return (a<b) ? a : b;}
  function fmax2 (line 27) | float fmax2(float a, float b){return (a>b) ? a : b;}
  function fmin2 (line 28) | float fmin2(float a, float b){return (a<b) ? a : b;}
  function prterr (line 66) | void prterr(int icode, const char *mes) {
  function fexact (line 72) | static void fexact(int *nrow, int *ncol, int *table, int *ldtabl,
  function f2xact (line 308) | static void f2xact(int nrow, int ncol, int *table, int ldtabl,
  function f3xact (line 760) | static double f3xact(int nrow, int *irow, int ncol, int *icol,
  function f4xact (line 1069) | static double f4xact(int nrow, int *irow, int ncol, int *icol, double dspt,
  function f5xact (line 1265) | void f5xact(double *pastp, const double *tol, int *kval, int *key, int *...
  function Rboolean (line 1426) | Rboolean f6xact(int nrow, int *irow, int *kyy, int *key, int *ldkey, int...
  function f7xact (line 1473) | void f7xact(int nrow, int *imax, int *idif, int *k, int *ks, int *iflag) {
  function f8xact (line 1569) | void f8xact(int *irow, int is, int i1, int izero, int *new) {
  function f9xact (line 1606) | static double f9xact(int n, int ntot, int *ir, double *fact) {
  function Rboolean (line 1627) | Rboolean f10act(int nrow, int *irow, int ncol, int *icol, double *val,
  function f11act (line 1684) | void f11act(int *irow, int i1, int i2, int *new) {
  function iwork (line 1700) | static int iwork(int iwkmax, int *iwkpt, int number, int itype) {
  function isort (line 1731) | void isort(int *n, int *ix) {
  function gammds (line 1805) | static double gammds(double *y, double *p, int *ifault) {
  function apop_data (line 1894) | apop_data *apop_test_fisher_exact(apop_data *intab){

FILE: apop_hist.m4.c
  function APOP_VAR_HEAD (line 29) | APOP_VAR_HEAD apop_model *apop_model_to_pmf(apop_model *model, apop_data...
  function apop_data (line 62) | apop_data *apop_histograms_test_goodness_of_fit(apop_model *observed, ap...
  function m_multiply (line 90) | static void m_multiply(long double *A, long double *B, long double *C, i...
  function m_power (line 103) | static void m_power(long double *A, int eA, long double *V, int *eV, int...
  function kolmogorov_2x (line 137) | static double kolmogorov_2x(int n, double d) {
  function psmirnov2x (line 189) | static double psmirnov2x(double x, int m, int n) {
  function apop_data (line 241) | apop_data *apop_test_kolmogorov(apop_model *m1, apop_model *m2){
  function APOP_VAR_HEAD (line 324) | APOP_VAR_HEAD apop_data *apop_data_to_bins(apop_data const *indata, apop...
  function gsl_vector (line 367) | gsl_vector *apop_vector_moving_average(gsl_vector *v, size_t bandwidth){

FILE: apop_linear_algebra.m4.c
  function apop_gsl_error (line 10) | void apop_gsl_error(const char *reason, const char *file, int line, int ...
  function apop_det_and_inv (line 40) | double apop_det_and_inv(const gsl_matrix *in, gsl_matrix **out, int calc...
  function gsl_matrix (line 70) | gsl_matrix * apop_matrix_inverse(const gsl_matrix *in) {
  function apop_matrix_determinant (line 84) | double apop_matrix_determinant(const gsl_matrix *in) {
  function APOP_VAR_HEAD (line 110) | APOP_VAR_HEAD apop_data * apop_matrix_pca(gsl_matrix *data, int const di...
  function l10 (line 147) | static void l10(double *d){ *d = log10(*d); }
  function ln (line 148) | static void ln(double *d){ *d = log(*d); }
  function ex (line 149) | static void ex(double *d){ *d = exp(*d); }
  function apop_vector_log10 (line 154) | void apop_vector_log10(gsl_vector *v){
  function apop_vector_log (line 162) | void apop_vector_log(gsl_vector *v){
  function apop_vector_exp (line 170) | void apop_vector_exp(gsl_vector *v){
  function APOP_VAR_HEAD (line 186) | APOP_VAR_HEAD gsl_vector *apop_vector_stack(gsl_vector *v1, gsl_vector c...
  function APOP_VAR_HEAD (line 242) | APOP_VAR_HEAD gsl_matrix *apop_matrix_stack(gsl_matrix *m1, gsl_matrix c...
  function APOP_VAR_HEAD (line 308) | APOP_VAR_HEAD int apop_vector_bounded(const gsl_vector *in, long double ...
  function gsl_vector (line 322) | static gsl_vector* dot_for_apop_dot(const gsl_matrix *m, const gsl_vecto...
  function APOP_VAR_HEAD (line 380) | APOP_VAR_HEAD apop_data * apop_dot(const apop_data *d1, const apop_data ...

FILE: apop_linear_constraint.m4.c
  function magnitude (line 8) | static double magnitude(gsl_vector *v){
  function find_nearest_point (line 14) | static void find_nearest_point(gsl_vector *V, double k, gsl_vector *B, g...
  function binds (line 28) | static int binds(gsl_vector const *v, double k, gsl_vector const *b, dou...
  function trig_bit (line 34) | static double trig_bit(gsl_vector *dimv, gsl_vector *otherv, double off_...
  function get_candiate (line 51) | static void get_candiate(gsl_vector *beta, apop_data *constraint, int cu...
  function apop_linear_constraint (line 124) | APOP_VAR_HEAD long double  apop_linear_constraint(gsl_vector *beta, apop...

FILE: apop_mapply.m4.c
  function APOP_VAR_HEAD (line 119) | APOP_VAR_HEAD apop_data* apop_map(apop_data *in, apop_fn_d *fn_d, apop_f...
  type threadpass (line 220) | typedef struct {
  function rowloop (line 234) | static void rowloop(threadpass *tc){
  function forloop (line 249) | static void forloop(threadpass *tc){
  function oldforloop (line 264) | static void oldforloop(threadpass *tc){
  function vectorloop (line 275) | static void vectorloop(threadpass *tc){
  function oldvectorloop (line 291) | static void oldvectorloop(threadpass *tc){
  function gsl_vector (line 300) | static gsl_vector*mapply_core(apop_data *d, gsl_matrix *m, gsl_vector *v...
  function gsl_vector (line 329) | gsl_vector *apop_matrix_map(const gsl_matrix *m, double (*fn)(gsl_vector...
  function apop_matrix_apply (line 347) | void apop_matrix_apply(gsl_matrix *m, void (*fn)(gsl_vector*)){
  function gsl_vector (line 365) | gsl_vector *apop_vector_map(const gsl_vector *v, double (*fn)(double)){
  function apop_vector_apply (line 382) | void apop_vector_apply(gsl_vector *v, void (*fn)(double*)){
  function apop_matrix_map_all_vector_subfn (line 386) | static void apop_matrix_map_all_vector_subfn(const gsl_vector *in, gsl_v...
  function gsl_matrix (line 400) | gsl_matrix * apop_matrix_map_all(const gsl_matrix *in, double (*fn)(doub...
  function apop_matrix_apply_all (line 420) | void apop_matrix_apply_all(gsl_matrix *in, void (*fn)(double *)){
  function apop_vector_map_sum (line 435) | double apop_vector_map_sum(const gsl_vector *in, double(*fn)(double)){
  function apop_matrix_map_all_sum (line 449) | double apop_matrix_map_all_sum(const gsl_matrix *in, double (*fn)(double)){
  function apop_matrix_map_sum (line 463) | double apop_matrix_map_sum(const gsl_matrix *in, double (*fn)(gsl_vector...
  function APOP_VAR_HEAD (line 485) | APOP_VAR_HEAD double apop_map_sum(apop_data *in, apop_fn_d *fn_d, apop_f...

FILE: apop_mcmc.m4.c
  function step_to_vector (line 11) | static void step_to_vector(double const *d, apop_mcmc_proposal_s *ps, ap...
  function sigma_adapt (line 18) | int sigma_adapt(apop_mcmc_proposal_s *ps, apop_mcmc_settings *ms){
  function setup_normal_proposals (line 66) | static void setup_normal_proposals(apop_mcmc_proposal_s *s, int tsize, a...
  function set_block_count_and_block_starts (line 76) | static void set_block_count_and_block_starts(apop_data *in,
  function one_step (line 104) | static void one_step(apop_data *d, gsl_vector *draw, apop_model *m, apop...
  function apop_model_metropolis_draw (line 167) | int apop_model_metropolis_draw(double *out, gsl_rng* rng, apop_model *mo...
  function main_mcmc_loop (line 198) | void main_mcmc_loop(apop_data *d, apop_model *m, apop_data *out, gsl_vec...
  function APOP_VAR_HEAD (line 281) | APOP_VAR_HEAD apop_model *apop_model_metropolis(apop_data *d, gsl_rng *r...

FILE: apop_missing_data.m4.c
  function APOP_VAR_HEAD (line 33) | APOP_VAR_HEAD apop_data * apop_data_listwise_delete(apop_data *d, char i...
  function i_est (line 90) | static void i_est(apop_data *d, apop_model *ml_model){
  function i_ll (line 95) | static long double i_ll(apop_data *d, apop_model *ml_model){
  function i_p (line 100) | static long double i_p(apop_data *d, apop_model *ml_model){
  function i_constraint (line 106) | static long double i_constraint(apop_data *d, apop_model *ml_model){
  function apop_model (line 132) | apop_model * apop_ml_impute(apop_data *d,  apop_model* mvn){

FILE: apop_mle.m4.c
  type grad_params (line 17) | typedef struct {
  type infostruct (line 22) | typedef struct {
  type apop_model_for_infomatrix_struct (line 146) | typedef struct {
  function apop_fn_for_infomatrix (line 152) | static long double apop_fn_for_infomatrix(apop_data *d, apop_model *m){
  function APOP_VAR_HEAD (line 187) | APOP_VAR_HEAD apop_data * apop_model_hessian(apop_data * data, apop_mode...
  function APOP_VAR_HEAD (line 239) | APOP_VAR_HEAD apop_data * apop_model_numerical_covariance(apop_data * da...
  function tracepath (line 269) | static void tracepath(const gsl_vector *beta, double value, apop_data **...
  function negshell (line 296) | static double negshell (const gsl_vector *beta, void * in){
  function dnegshell (line 332) | static int dnegshell (const gsl_vector *beta, void * in, gsl_vector * g){
  function fdf_shell (line 362) | static void fdf_shell(const gsl_vector *beta, void *i, double *f, gsl_ve...
  function mle_sigint (line 368) | static void mle_sigint(int){ ctrl_c ++; }
  function setup_starting_point (line 370) | static int setup_starting_point(apop_mle_settings *mp, gsl_vector *x){
  function add_info_criteria (line 378) | void add_info_criteria(apop_data *d, apop_model *m, apop_model *est, dou...
  function auxinfo (line 395) | static void auxinfo(apop_data *params, infostruct *i, int status, double...
  function apop_maximum_likelihood_w_d (line 411) | static void apop_maximum_likelihood_w_d(apop_data * data, infostruct *i){
  function apop_maximum_likelihood_no_d (line 475) | static void apop_maximum_likelihood_no_d(apop_data * data, infostruct * i){
  function get_ll (line 531) | static double get_ll(apop_data *d, apop_model *est){
  function dim_cycle (line 538) | static void dim_cycle(apop_data *d, apop_model *est, infostruct info){
  function get_desires (line 574) | void get_desires(apop_model *m, infostruct *info){
  function check_method (line 586) | int check_method (char *m){
  function apop_maximum_likelihood (line 635) | void apop_maximum_likelihood(apop_data * data, apop_model *dist){
  function APOP_VAR_HEAD (line 708) | APOP_VAR_HEAD apop_model * apop_estimate_restart (apop_model *e, apop_mo...
  function annealing_energy (line 757) | static double annealing_energy(void *in) {
  function annealing_distance (line 762) | static double annealing_distance(void *xin, void *yin) {
  function annealing_check_constraint (line 771) | static void annealing_check_constraint(infostruct *i){
  function annealing_step (line 777) | static void annealing_step(const gsl_rng * r, void *in, double step_size){
  function annealing_print (line 802) | static void annealing_print(void *xp) {
  function annealing_print2 (line 806) | static void annealing_print2(void *xp) { return; }
  function annealing_memcpy (line 808) | static void annealing_memcpy(void *xp, void *yp){
  function annealing_free (line 821) | static void annealing_free(void *xp){
  function set_start (line 827) | static double set_start(double in){ return in ? in : 1; }
  function anneal_sigint (line 830) | static void anneal_sigint(int){ longjmp(anneal_jump,1); }
  function apop_annealing (line 832) | static void apop_annealing(infostruct *i){
  function apop_model (line 885) | static apop_model * find_roots (infostruct p) {

FILE: apop_model.m4.c
  function apop_model (line 20) | apop_model * apop_model_clear(apop_data * data, apop_model *model){
  function apop_model_free (line 55) | void apop_model_free (apop_model * free_me){
  function APOP_VAR_HEAD (line 119) | APOP_VAR_HEAD void apop_model_print (apop_model * model, FILE *output_pi...
  function apop_model_show (line 137) | void apop_model_show (apop_model * print_me){
  function apop_model (line 155) | apop_model * apop_model_copy(apop_model *in){
  function apop_model (line 207) | apop_model *apop_model_set_parameters_base(apop_model *in, double ap[]){
  function apop_model (line 229) | apop_model *apop_estimate(apop_data *d, apop_model *m){
  function apop_p (line 242) | double apop_p(apop_data *d, apop_model *m){
  function apop_log_likelihood (line 257) | double apop_log_likelihood(apop_data *d, apop_model *m){
  function apop_score (line 290) | void apop_score(apop_data *d, gsl_vector *out, apop_model *m){
  function apop_draw (line 413) | int apop_draw(double *out, gsl_rng *r, apop_model *m){
  function apop_prep (line 447) | void apop_prep(apop_data *d, apop_model *m){
  function disnan (line 452) | static double disnan(double in) {return gsl_isnan(in);}
  function apop_data (line 482) | apop_data *apop_predict(apop_data *d, apop_model *m){
  function lte (line 497) | static int lte(gsl_vector *v, gsl_vector *ref){
  function apop_cdf (line 527) | double apop_cdf(apop_data *d, apop_model *m){

FILE: apop_name.m4.c
  function apop_name (line 23) | apop_name * apop_name_alloc(void){
  function apop_name_hash (line 31) | static unsigned long apop_name_hash(char const *str){
  function apop_name_add (line 49) | int apop_name_add(apop_name * n, char const *add_me, char type){
  function apop_name_print (line 97) | void apop_name_print(apop_name * n){
  function apop_name_free (line 128) | void  apop_name_free(apop_name * free_me){
  function APOP_VAR_HEAD (line 151) | APOP_VAR_HEAD void  apop_name_stack(apop_name * n1, apop_name *nadd, cha...
  function apop_name (line 190) | apop_name * apop_name_copy(apop_name *in){
  function apop_name_find (line 209) | int apop_name_find(const apop_name *n, const char *name, const char type){

FILE: apop_output.m4.c
  function apop_prep_output (line 50) | int apop_prep_output(char const *output_name, FILE ** output_pipe, char ...
  function white_pad (line 77) | static void white_pad(int ct){
  function apop_data_show (line 96) | void apop_data_show(const apop_data *in){
  function p_fn (line 177) | void p_fn(FILE * f, double data){
  function print_core_v (line 182) | static void print_core_v(const gsl_vector *data, char *separator, Output...
  function APOP_VAR_HEAD (line 205) | APOP_VAR_HEAD void apop_vector_print(gsl_vector *data, Output_declares){
  function apop_vector_show (line 220) | void apop_vector_show(const gsl_vector *data){
  function get_max_strlen (line 224) | static int get_max_strlen(char **names, size_t len){
  function a_pipe (line 232) | static void a_pipe(FILE *f, char displaytype){
  function apop_data_print_core (line 237) | static void apop_data_print_core(const apop_data *data, FILE *f, char di...
  function APOP_VAR_HEAD (line 324) | APOP_VAR_HEAD void apop_data_print(const apop_data *data, Output_declares){
  function APOP_VAR_HEAD (line 349) | APOP_VAR_HEAD void apop_matrix_print(const gsl_matrix *data, Output_decl...
  function apop_matrix_show (line 363) | void apop_matrix_show(const gsl_matrix *data){

FILE: apop_rake.m4.c
  type mnode_t (line 41) | typedef struct {
  function find_val (line 49) | static int find_val(double findme, mnode_t *nodecol){
  function index_add_node (line 57) | int index_add_node(mnode_t **mnodes, size_t dim, size_t row, double val,...
  function mnode_t (line 65) | mnode_t **index_generate(apop_data const *in, apop_data const *in2){
  function index_free (line 94) | void index_free(mnode_t **in){
  function value_loop (line 111) | static void value_loop(mnode_t *icon[], int *indices, mnode_t **values,
  function index_foreach (line 129) | void index_foreach(mnode_t *index[], index_apply_f f, void *args){
  function index_get_element_list (line 151) | void index_get_element_list(mnode_t *const * index, bool *d, size_t len,...
  type rake_t (line 163) | typedef struct {
  function rakeinfo_grow (line 175) | static void rakeinfo_grow(rake_t *r){
  function rakeinfo_free (line 182) | static void rakeinfo_free(rake_t r){
  function scaling (line 193) | static void scaling(size_t const *elmts, size_t const n,  gsl_vector *we...
  function one_set_of_values (line 209) | static void one_set_of_values(mnode_t *const * const margincons, int ctr...
  function main_loop (line 250) | static void main_loop(int config_ct, rake_t *rakeinfo, int k){
  function generate_margin_index (line 260) | void generate_margin_index(mnode_t **icon, const apop_data *margin, mnod...
  function cleanup (line 269) | void cleanup(mnode_t **index, rake_t rakeinfos[], int contrast_ct){
  function c_loglin (line 289) | static void c_loglin(const apop_data *config, const apop_data *indata,
  function apop_data (line 330) | apop_data **generate_list_of_contrasts(char *const *contras_in, int cont...
  function apop_data (line 339) | apop_data *get_var_list(char const *margin_table, char const *count_col,...
  function get_var_index (line 363) | static int get_var_index(char *const *all_vars, int len, char *findme){
  function nan_to_zero (line 371) | void nan_to_zero(double *in){ if (gsl_isnan(*in)) *in=0;}
  function nudge_zeros (line 373) | double nudge_zeros(apop_data *in, void *nudge){
  function find_in_allvars (line 379) | int find_in_allvars(char const *in, apop_data const *allvars){
  function setup_nonzero_contrast (line 394) | static int setup_nonzero_contrast(char const *margin_table,
  function APOP_VAR_HEAD (line 525) | APOP_VAR_HEAD apop_data * apop_rake(char const *margin_table, char * con...

FILE: apop_regression.m4.c
  function apop_estimate_parameter_tests (line 8) | void apop_estimate_parameter_tests (apop_model *est){
  function compare_doubles (line 38) | static int compare_doubles (const void *a, const void *b) {
  function strcmpwrap (line 47) | static int strcmpwrap(const void *a, const void *b){
  function gsl_vector (line 62) | gsl_vector * apop_vector_unique_elements(const gsl_vector *v){
  function apop_data (line 89) | apop_data * apop_text_unique_elements(const apop_data *d, size_t col){
  function APOP_VAR_HEAD (line 153) | APOP_VAR_HEAD apop_data *apop_data_get_factor_names(apop_data *data, int...
  function apop_data (line 165) | apop_data * create_factor_list(apop_data *d, int col, char type){
  function apop_data (line 197) | static apop_data * dummies_and_factors_core(apop_data *d, int col, char ...
  function APOP_VAR_HEAD (line 326) | APOP_VAR_HEAD apop_data * apop_data_to_dummies(apop_data *d, int col, ch...
  function APOP_VAR_HEAD (line 423) | APOP_VAR_HEAD apop_data *apop_data_to_factors(apop_data *data, char inty...
  function apop_data (line 474) | apop_data *apop_text_to_factors(apop_data *d, size_t textcol, int datacol){
  function apop_data (line 522) | apop_data *apop_estimate_coefficient_of_determination (apop_model *m){

FILE: apop_settings.c
  function get_settings_ct (line 6) | static size_t get_settings_ct(apop_model *model){
  function apop_settings_hash (line 15) | static unsigned long apop_settings_hash(char *str){
  function apop_settings_remove_group (line 26) | void apop_settings_remove_group(apop_model *m, char *delme){
  function apop_model (line 60) | apop_model *apop_settings_group_alloc_wm(apop_model *model, char *type, ...
  function apop_settings_copy_group (line 90) | void apop_settings_copy_group(apop_model *outm, apop_model *inm, char *c...

FILE: apop_sort.m4.c
  function find_smallest_larger_than (line 7) | static double find_smallest_larger_than(apop_data const *sort_order, dou...
  function generate_sort_order (line 45) | static void generate_sort_order(apop_data const *data, apop_data const *...
  function find_min_unsorted (line 65) | static int find_min_unsorted(size_t *sorted, size_t height, size_t min){
  function compare_strings (line 75) | static int compare_strings(const void *a, const void *b) {
  function rearrange (line 83) | static void rearrange(apop_data *data, size_t height, size_t *perm){
  function APOP_VAR_HEAD (line 142) | APOP_VAR_HEAD apop_data *apop_data_sort(apop_data *data, apop_data *sort...

FILE: apop_stats.m4.c
  function apop_vector_sum (line 15) | long double apop_vector_sum(const gsl_vector *in){
  function apop_vector_skew (line 40) | double apop_vector_skew(const gsl_vector *in){
  function apop_vector_kurtosis (line 52) | double apop_vector_kurtosis(const gsl_vector *in){
  function wskewkurt (line 60) | static double wskewkurt(const gsl_vector *v, const gsl_vector *w, const ...
  function APOP_VAR_HEAD (line 88) | APOP_VAR_HEAD double apop_vector_skew_pop(gsl_vector const *v, gsl_vecto...
  function APOP_VAR_HEAD (line 120) | APOP_VAR_HEAD double apop_vector_kurtosis_pop(gsl_vector const *v, gsl_v...
  function apop_vector_var_m (line 144) | double apop_vector_var_m(const gsl_vector *in, const double mean){
  function APOP_VAR_HEAD (line 162) | APOP_VAR_HEAD double apop_vector_correlation(const gsl_vector *ina, cons...
  function APOP_VAR_HEAD (line 198) | APOP_VAR_HEAD double apop_vector_distance(const gsl_vector *ina, const g...
  function APOP_VAR_HEAD (line 268) | APOP_VAR_HEAD void apop_vector_normalize(gsl_vector *in, gsl_vector **ou...
  function apop_matrix_sum (line 310) | long double apop_matrix_sum(const gsl_matrix *m){
  function apop_matrix_mean (line 324) | double apop_matrix_mean(const gsl_matrix *data){
  function apop_matrix_mean_and_var (line 355) | void apop_matrix_mean_and_var(const gsl_matrix *data, double *mean, doub...
  function apop_data (line 386) | apop_data * apop_data_summarize(apop_data *indata){
  function APOP_VAR_HEAD (line 449) | APOP_VAR_HEAD double * apop_vector_percentiles(gsl_vector *data, char ro...
  function APOP_VAR_HEAD (line 477) | APOP_VAR_HEAD double apop_vector_mean(gsl_vector const *v, gsl_vector co...
  function APOP_VAR_HEAD (line 508) | APOP_VAR_HEAD double apop_vector_var(gsl_vector const *v, gsl_vector con...
  function APOP_VAR_HEAD (line 536) | APOP_VAR_HEAD double apop_vector_cov(const gsl_vector *v1, const gsl_vec...
  function apop_data (line 578) | apop_data *apop_data_covariance(const apop_data *in){
  function apop_data (line 602) | apop_data *apop_data_correlation(const apop_data *in){
  function apop_vector_entropy (line 639) | long double apop_vector_entropy(gsl_vector *in){
  function norment (line 658) | static long double norment(apop_model *m){
  function get_ll (line 663) | double get_ll(apop_data *d, void *m){ return apop_log_likelihood(d, m); }
  function apop_model_entropy (line 683) | APOP_VAR_HEAD long double apop_model_entropy(apop_model *in, int draws){
  function apop_kl_divergence (line 731) | APOP_VAR_HEAD long double apop_kl_divergence(apop_model *from, apop_mode...
  function apop_multivariate_gamma (line 787) | long double apop_multivariate_gamma(double a, int p){
  function apop_multivariate_lngamma (line 799) | long double apop_multivariate_lngamma(double a, int p){
  function find_eigens (line 807) | static void find_eigens(gsl_matrix **subject, gsl_vector *eigenvals, gsl...
  function diagonal_copy (line 814) | static void diagonal_copy(gsl_vector *v, gsl_matrix *m, char in_or_out){
  function diagonal_size (line 820) | static double diagonal_size(gsl_matrix *m){
  function biggest_elmt (line 825) | static double biggest_elmt(gsl_matrix *d){
  function APOP_VAR_HEAD (line 845) | APOP_VAR_HEAD int apop_matrix_is_positive_semidefinite(gsl_matrix *m, ch...
  function vfabs (line 859) | void vfabs(double *x){*x = fabs(*x);}
  function apop_matrix_to_positive_semidefinite (line 871) | double apop_matrix_to_positive_semidefinite(gsl_matrix *m){

FILE: apop_tests.m4.c
  function apop_data (line 6) | static apop_data * produce_t_test_output(int df, double stat, double diff){
  function apop_data (line 54) | apop_data *	apop_t_test(gsl_vector *a, gsl_vector *b){
  function apop_data (line 91) | apop_data * apop_paired_t_test(gsl_vector *a, gsl_vector *b){
  function APOP_VAR_HEAD (line 138) | APOP_VAR_HEAD apop_data * apop_f_test (apop_model *est, apop_data *contr...
  function one_chi_sq (line 219) | static double one_chi_sq(apop_data *d, int row, int col, int n){
  function apop_data (line 235) | apop_data * apop_test_anova_independence(apop_data *d){
  function apop_data (line 255) | static apop_data* apop_anova_one_way(char *table, char *data, char *grou...
  function APOP_VAR_HEAD (line 308) | APOP_VAR_HEAD apop_data* apop_anova(char *table, char *data, char *group...
  function APOP_VAR_HEAD (line 432) | APOP_VAR_HEAD double apop_test(double statistic, char *distribution, dou...

FILE: apop_update.m4.c
  function product_ll (line 23) | static long double product_ll(apop_data *d, apop_model *m){
  function product_constraint (line 31) | static long double product_constraint(apop_data *data, apop_model *m){
  function apop_model (line 45) | static apop_model *betabinom(apop_data *data, apop_model *prior, apop_mo...
  function countup (line 61) | double countup(double in){return in!=0;}
  function apop_model (line 63) | static apop_model *betabernie(apop_data *data, apop_model *prior, apop_m...
  function apop_model (line 72) | static apop_model *gammaexpo(apop_data *data, apop_model *prior, apop_mo...
  function apop_model (line 83) | static apop_model *gammapoisson(apop_data *data, apop_model *prior, apop...
  function apop_model (line 96) | static apop_model *normnorm(apop_data *data, apop_model *prior, apop_mod...
  function APOP_VAR_HEAD (line 183) | APOP_VAR_HEAD apop_model * apop_update(apop_data *data, apop_model *prio...

FILE: apop_vtables.c
  type apop_vtable_elmt_s (line 15) | typedef struct {
  type apop_vtable_s (line 20) | typedef struct {
  function apop_settings_hash (line 35) | static unsigned long apop_settings_hash(char const *str){
  function apop_vtable_s (line 42) | static apop_vtable_s *find_tab(unsigned long h, int *ctr){
  function apop_vtable_drop (line 51) | int apop_vtable_drop(char const *tabname, unsigned long hash){
  function apop_vtable_add (line 68) | int apop_vtable_add(char const *tabname, void *fn_in, unsigned long hash){

FILE: asprintf.c
  type arg_type (line 86) | typedef enum {
  type argument (line 123) | typedef struct {
  type arguments (line 165) | typedef struct {
  type char_directive (line 193) | typedef struct {
  type char_directives (line 209) | typedef struct {
  function asprintf (line 241) | int asprintf (char **resultp, const char *format, ...) {
  function printf_fetchargs (line 254) | int printf_fetchargs (va_list args, arguments *a) {
  function PRINTF_PARSE (line 457) | int
  function local_wcslen (line 943) | static size_t local_wcslen (const wchar_t *s) {
  function CHAR_T (line 985) | CHAR_T * VASNPRINTF (CHAR_T *resultbuf, size_t *lengthp, const CHAR_T *f...
  function vasprintf (line 1712) | int vasprintf (char **resultp, const char *format, va_list args) {

FILE: cmd/apop_db_to_crosstab.c
  function main (line 9) | int main(int argc, char **argv){

FILE: cmd/apop_plot_query.c
  function plot_histogram (line 16) | void plot_histogram(gsl_vector *data, FILE *f, size_t bin_count, char *w...
  function FILE (line 38) | FILE *open_output(char *outfile, int sf){
  function gsl_matrix (line 67) | gsl_matrix *query(char *d, char *q, int no_plot){
  function print_out (line 80) | void print_out(FILE *f, char *outfile, gsl_matrix *m){
  function main (line 91) | int main(int argc, char **argv){

FILE: cmd/apop_text_to_db.c
  function main (line 21) | int main(int argc, char **argv){

FILE: docs/tree.js
  function showBranch (line 6) | function showBranch(branch){
  function swapFolder (line 14) | function swapFolder(img){
  function changeSheets (line 22) | function changeSheets(whichSheet){
  function showAll (line 28) | function showAll(){
  function closeAll (line 35) | function closeAll(){

FILE: docs/triangle.c
  function main (line 3) | int main(){

FILE: eg/apop_map_row.c
  function set_vector_to_even (line 10) | double set_vector_to_even(apop_data * r, int index){
  function set_weight_to_index (line 15) | double set_weight_to_index(apop_data * r, int index){
  function weight_given_even (line 20) | double weight_given_even(apop_data *r){
  function main (line 24) | int main(){

FILE: eg/banana.c
  type coeff_struct (line 3) | typedef struct {
  function banana (line 7) | long double banana (double *params, coeff_struct *in){
  function ll (line 12) | long double ll (apop_data *d, apop_model *in){
  function main (line 16) | int main(){

FILE: eg/binning.c
  function main (line 8) | int main(){

FILE: eg/boot_clt.c
  function sim_step (line 4) | void sim_step(apop_data *none, apop_model *m){
  function main (line 18) | int main(){

FILE: eg/cross_models.c
  function cross_normals (line 9) | void cross_normals(){
  function norm_cross_poisson (line 39) | void norm_cross_poisson(){
  function main (line 87) | int main(){

FILE: eg/data_fill.c
  function with_fixed_numbers (line 3) | void with_fixed_numbers(){
  function with_a_list (line 11) | void with_a_list(){
  function main (line 20) | int main(){

FILE: eg/db_fns.c
  function test_all (line 7) | double test_all(apop_data *row){
  function main (line 15) | int main(){

FILE: eg/dconstrain.c
  function over_zero (line 4) | double over_zero(apop_data *in, apop_model *m){
  function in_bounds (line 9) | double in_bounds(apop_model *m){
  function main (line 15) | int main(){

FILE: eg/dot_products.c
  function main (line 9) | int main(){

FILE: eg/draw_some_normals.c
  function main (line 4) | int main(){

FILE: eg/draw_to_db.c
  function process_one (line 4) | double process_one(gsl_rng *r){
  function process_two (line 8) | double process_two(gsl_rng *r){
  function main (line 12) | int main(){

FILE: eg/entropy_model.c
  function mask (line 19) | long double mask(apop_data *d, apop_model *m){
  function main (line 23) | int main(){

FILE: eg/entropy_vector.c
  function entropy_base_2 (line 5) | long double entropy_base_2(gsl_vector *x) {
  function main (line 9) | int main(){

FILE: eg/f_test.c
  function test_f (line 14) | void test_f(apop_model *est){
  function main (line 33) | int main(){

FILE: eg/faithful.c
  function show_mix (line 14) | void show_mix(apop_model *in){
  function main (line 23) | int main(){

FILE: eg/fake_logit.c
  function write_data (line 8) | void write_data(){
  function main (line 26) | int main(){

FILE: eg/fix_params.c
  function main (line 3) | int main(){

FILE: eg/hills2.c
  function apop_model (line 9) | apop_model *produce_fixed_mvn(double x, double y){
  function main (line 18) | int main(){

FILE: eg/iv.c
  function add_noise (line 23) | void add_noise(gsl_vector *in, gsl_rng *r, double size){
  function test_for_unbiased_parameter_estimates (line 36) | void test_for_unbiased_parameter_estimates(apop_model *m, double toleran...
  function main (line 41) | int main(){

FILE: eg/jack.c
  function main (line 3) | int main(){

FILE: eg/jacobian.c
  function apop_data (line 8) | apop_data *draw_exponentiated_normal(double mu, double sigma, double dra...
  function apop_data (line 18) | apop_data *rev(apop_data *in){ return apop_map(in, .fn_d=log, .part='a'); }
  function inv (line 21) | double inv(double in){return 1./in;}
  function rev_j (line 22) | double rev_j(apop_data *in){ return fabs(apop_map_sum(in, .fn_d=inv, .pa...
  function main (line 24) | int main(){

FILE: eg/kernel.c
  function set_uniform_edges (line 23) | void set_uniform_edges(apop_data * r, apop_model *unif){
  function plot (line 28) | void plot(apop_model *k, apop_model *k2){
  function apop_data (line 40) | apop_data *draw_some_data(){
  function main (line 47) | int main(){

FILE: eg/ks_tests.c
  function apop_model (line 5) | apop_model * model_to_pmfs(apop_model *m1, int size){
  function main (line 10) | int main(){

FILE: eg/logit.c
  function main (line 11) | int main(){

FILE: eg/ls_tables.c
  function print_table_list (line 3) | void print_table_list(char *db_file){
  function main (line 11) | int main(int argc, char **argv){

FILE: eg/ml_imputation.c
  function compare_mvn_estimates (line 3) | static void compare_mvn_estimates(apop_model *L, apop_model *R, double t...
  function test_ml_imputation (line 9) | void test_ml_imputation(gsl_rng *r){
  function main (line 44) | int main(){

FILE: eg/normalization_demo.c
  function main (line 3) | int main(void){

FILE: eg/ols.c
  function main (line 9) | int main(){

FILE: eg/ols2.c
  function main (line 4) | int main(void){

FILE: eg/ols_oneliner.c
  function main (line 8) | int main(){ apop_model_print(apop_estimate(apop_text_to_data( DATADIR "/...

FILE: eg/parameterization.c
  function main (line 6) | int main(){

FILE: eg/pmf_test.c
  function pack_p (line 3) | long double pack_p (apop_data *d, apop_model *m){
  function pack_prep (line 13) | void pack_prep(apop_data *d, apop_model *m){
  function pack_constraint (line 20) | long double pack_constraint(apop_data *d, apop_model *m){
  function main (line 28) | int main(){

FILE: eg/simple_subsets.c
  function main (line 9) | int main(){

FILE: eg/some_cdfs.c
  function main (line 3) | int main(){

FILE: eg/sql_to_html.c
  function main (line 3) | int main(){

FILE: eg/t_test_by_rows.c
  function offset_rng (line 5) | void offset_rng(double *v){*v = gsl_rng_uniform(apop_rng_get_thread()) +...
  function find_tstat (line 6) | double find_tstat(gsl_vector *in){ return apop_mean(in)/sqrt(apop_var(in...
  function conf (line 7) | double conf(double in, void *df){ return gsl_cdf_tdist_P(in, *(int *)df);}
  function mu (line 10) | double mu(gsl_vector *in){ return apop_vector_mean(in);}
  function main (line 12) | int main(){

FILE: eg/test_distances.c
  function main (line 4) | int main(){

FILE: eg/test_fisher.c
  function main (line 3) | int main() {

FILE: eg/test_harmonic.c
  function main (line 3) | int main(){

FILE: eg/test_kl_divergence.c
  function fake_p (line 3) | long double fake_p (apop_data *d, apop_model *m){
  function main (line 7) | int main(){

FILE: eg/test_pruning.c
  function main (line 4) | int main(){

FILE: eg/test_ranks.c
  function main (line 6) | int main(){

FILE: eg/test_regex.c
  function main (line 2) | int main(){

FILE: eg/test_updating.c
  function distances (line 4) | void distances(gsl_vector *v1, gsl_vector *v2, double tol){
  function main (line 10) | int main(){

FILE: eg/text_demo.c
  function main (line 3) | int main(){

FILE: eg/transform.c
  function greater_than_zero (line 5) | double greater_than_zero(apop_data *d, apop_model *m){
  function main (line 9) | int main(){

FILE: model/apop_bernoulli.c
  function bernie_ll (line 13) | static double bernie_ll(double x, void * pin){
  function bernoulli_log_likelihood (line 18) | static long double bernoulli_log_likelihood(apop_data *d, apop_model *pa...
  function nonzero (line 24) | static double nonzero (double in) { return in !=0; }
  function bernoulli_estimate (line 31) | static void bernoulli_estimate(apop_data * data,  apop_model *est){
  function bernoulli_constraint (line 42) | static long double bernoulli_constraint(apop_data *data, apop_model *inm...
  function bernoulli_rng (line 50) | static int bernoulli_rng(double *out, gsl_rng *r, apop_model* eps){
  function bernoulli_cdf (line 55) | static long double bernoulli_cdf(apop_data *d, apop_model *params){
  function bernie_print (line 68) | static void bernie_print(apop_model *m, FILE *out){
  function bernie_prep (line 72) | static void bernie_prep(apop_data *data, apop_model *params){

FILE: model/apop_beta.c
  function beta_estimate (line 19) | static void beta_estimate(apop_data * data,  apop_model *est){
  type ab_type (line 41) | typedef struct{
  function betamap (line 46) | static double betamap(double x, void *abin) {
  function beta_log_likelihood (line 56) | static long double beta_log_likelihood(apop_data *d, apop_model *p){
  function dbeta_callback (line 64) | static double dbeta_callback(double x){ return log(1-x); }
  function beta_dlog_likelihood (line 66) | static void beta_dlog_likelihood(apop_data *d, gsl_vector *gradient, apo...
  function beta_constraint (line 77) | static long double beta_constraint(apop_data *data, apop_model *v){
  function beta_cdf (line 82) | static long double beta_cdf(apop_data *d, apop_model *params){
  function beta_rng (line 90) | static int beta_rng(double *out, gsl_rng *r, apop_model* eps){
  function beta_prep (line 101) | static void beta_prep(apop_data *data, apop_model *params){

FILE: model/apop_dirichlet.c
  function dirichletlnmap (line 13) | static double dirichletlnmap(gsl_vector *v, void *pin) {
  function dirichlet_log_likelihood (line 19) | static long double dirichlet_log_likelihood(apop_data *d, apop_model *p){
  function dirichlet_dlog_likelihood (line 28) | static void dirichlet_dlog_likelihood(apop_data *d, gsl_vector *gradient...
  function dirichlet_constraint (line 40) | static long double dirichlet_constraint(apop_data *data, apop_model *v){
  function dirichlet_rng (line 46) | static int dirichlet_rng(double *out, gsl_rng *r, apop_model* eps){
  function dirichlet_prep (line 51) | static void dirichlet_prep(apop_data *data, apop_model *params){

FILE: model/apop_exponential.c
  function beta_greater_than_x_constraint (line 25) | static long double beta_greater_than_x_constraint(apop_data *data, apop_...
  function exponential_log_likelihood (line 30) | static long double exponential_log_likelihood(apop_data *d, apop_model *p){
  function exponential_dlog_likelihood (line 39) | static void exponential_dlog_likelihood(apop_data *d, gsl_vector *gradie...
  function exponential_estimate (line 49) | static void exponential_estimate(apop_data * data,  apop_model *est){
  function expo_cdf (line 59) | static long double expo_cdf(apop_data *d, apop_model *params){
  function exponential_rng (line 68) | static int exponential_rng(double *out, gsl_rng* r, apop_model *p){
  function exponential_prep (line 73) | static void exponential_prep(apop_data *data, apop_model *params){

FILE: model/apop_gamma.c
  function gamma_constraint (line 23) | static long double gamma_constraint(apop_data *data, apop_model *v){
  type abstruct (line 29) | typedef struct {double a, b, ln_ga_plus_a_ln_b;} abstruct;
  function apply_for_gamma (line 32) | static double apply_for_gamma(double x, void *abin) {
  function gamma_log_likelihood (line 37) | static long double gamma_log_likelihood(apop_data *d, apop_model *p){
  function a_callback (line 51) | static double a_callback(double x, void *ab){ return log(x)- *(double*)a...
  function b_callback (line 53) | static double b_callback(double x, void *abv){
  function gamma_dlog_likelihood (line 58) | static void gamma_dlog_likelihood(apop_data *d, gsl_vector *gradient, ap...
  function gamma_rng (line 71) | static int gamma_rng( double *out, gsl_rng* r, apop_model *p){
  function gamma_cdf (line 76) | static long double gamma_cdf(apop_data *d, apop_model *params){
  function gamma_prep (line 85) | static void gamma_prep(apop_data *data, apop_model *params){
  function gamma_est (line 96) | static void gamma_est(apop_data *data, apop_model *m){

FILE: model/apop_kerneld.c
  function apop_set_first_param (line 52) | static void apop_set_first_param(apop_data *in, apop_model *m){
  function apop_kernel_estimate (line 77) | static void apop_kernel_estimate(apop_data *d, apop_model *m){
  function kernel_cdf (line 84) | static long double kernel_cdf(apop_data *d, apop_model *m){
  function kernel_ll (line 104) | static long double kernel_ll(apop_data *d, apop_model *m){
  function kernel_draw (line 144) | static int kernel_draw(double *d, gsl_rng *r, apop_model *m){

FILE: model/apop_loess.c
  type logical (line 77) | typedef long int logical;
  type integer (line 78) | typedef long int integer;
  function dswap (line 92) | void dswap(const integer N, double *x, double *y){ cblas_dswap(N, x, 1, ...
  function dnrm2 (line 94) | double dnrm2(const integer *N, const double *x){ return cblas_dnrm2(*N, ...
  function ddot_ (line 96) | double ddot_(const integer *N, const double *x, const integer *incx, con...
  function daxpy_ (line 99) | void daxpy_(integer *N, const double *alpha, const double *x, integer *i...
  function dcopy_ (line 102) | void dcopy_(const integer *N, const double *x, const integer incx, doubl...
  function dscal (line 105) | void dscal(integer *N, const double alpha, double *x){ cblas_dscal(*N, a...
  function drotg_ (line 107) | static void drotg_(double *a,double *b, double *c, double *s){ cblas_dro...
  function drot_ (line 109) | void drot_(const integer *N, double *x, const integer *incx, double *y, ...
  function integer (line 113) | static integer pow_ii(integer x, integer n) { return gsl_pow_int(x, n); }
  function d_sign (line 115) | static double d_sign(double *a, double *b) {
  function dqrsl_ (line 232) | static void dqrsl_(double *x, integer *ldx, integer *n, integer * k, dou...
  function dsvdc_ (line 451) | static void dsvdc_(double *x, integer *ldx, integer *n, integer * p, dou...
  function loess_error (line 836) | static void loess_error(int i){ //used to be ehg182.
  function ehg183_ (line 868) | static void ehg183_(char *s, integer *i, integer n, integer inc) {
  function ehg184_ (line 878) | static void ehg184_(char *s, double *x, integer n, integer inc) {
  function integer (line 904) | static integer ifloor(double x) {
  function ehg126_ (line 911) | static void ehg126_(integer *d__, integer *n, integer *vc, double *x, do...
  function ehg125_ (line 952) | static void ehg125_(integer *p, integer *nv, double *v, integer *vhit, i...
  function find_kth_smallest (line 1004) | static void find_kth_smallest(integer il, integer ir, integer k, integer...
  function integer (line 1061) | static integer idamax(integer n, double *dx, integer incx) {
  function ehg124_ (line 1093) | static void ehg124_(integer *ll, integer *uu, integer d__, integer n, in...
  function ehg127_ (line 1193) | static void ehg127_(double *q, integer *n, integer *d__, integer *nf, do...
  function ehg129_ (line 1334) | static void ehg129_(integer *l, integer *u, integer *d__, double *x, int...
  function ehg131_ (line 1357) | static void ehg131_(double *x, double *y, double *rw, double *trl,
  function ehg133_ (line 1425) | static void ehg133_(integer *n, integer *d__, integer *vc, integer *nvma...
  function set_cs (line 1452) | static void set_cs(integer d, integer i, double *c1, double *c2, double ...
  function ehg141_ (line 1472) | static void ehg141_(double *trl, integer *n, integer *deg, integer *k, i...
  function lowesc_ (line 1499) | static void lowesc_(integer *n, double *l, double *ll, double *trl, doub...
  function ehg169_ (line 1533) | static void ehg169_(integer d__, integer *vc, integer *nc, integer *ncma...
  function ehg176_ (line 1582) | static double ehg176_(double *z) {
  function lowesa_ (line 1631) | static void lowesa_(double *trl, integer *n, integer *d__,
  function ehg191_ (line 1644) | static void ehg191_(integer *m, double *z__, double *l, integer *d__, in...
  function ehg196_ (line 1695) | static void ehg196_(integer tau, integer d__, double f, double *trl) {
  function ehg197 (line 1706) | static void ehg197(integer deg, integer d__, double f, integer *dk, doub...
  function hermite_prep (line 1716) | void hermite_prep(double h, double *phi0, double *phi1, double *psi0, do...
  function xibar_search (line 1723) | int xibar_search(const integer *a, const integer t[], const double* xi, ...
  function ehg128_ (line 1741) | static double ehg128_(double *z__, integer *d__, integer *ncmax, integer...
  function ehg136_ (line 1955) | static void ehg136_(double *u, integer *lm, integer *m, integer *n, inte...
  function ehg137_ (line 2054) | static void ehg137_(double *z__, integer *kappa, integer *leaf, integer ...
  function ehg139_ (line 2103) | static void ehg139_(double *v, integer *nvmax, integer *nv, integer *n, ...
  function dqrdc_ (line 2247) | static void dqrdc_(double *x, integer *ldx, integer *n, integer *p, doub...
  function lowesb_ (line 2462) | static void lowesb_(double *xx, double *yy, double *ww, double *diagl, d...
  function lowesd_ (line 2487) | static void lowesd_(integer *iv, integer *liv, integer *lv, double *v,
  function lowese_ (line 2565) | static void lowese_(integer *iv, integer *liv, integer *lv, double *wv, ...
  function lowesf_ (line 2579) | static void lowesf_(double *xx, double *yy, double *ww, integer *iv, int...
  function lowesl_ (line 2608) | static void lowesl_(integer *iv, integer *liv, integer *lv, double *wv, ...
  function lowesw_ (line 2631) | static void lowesw_(double *res, integer *n, double *rw, integer *pi) {
  function pseudovals (line 2666) | static void pseudovals(integer n, double *y, double *yhat, double *pwgts...
  function loess_workspace (line 2709) | static void loess_workspace(long D, long N, double	span, long degree,
  function loess_free (line 2731) | static void loess_free() {
  function loess_dfit (line 2736) | static void loess_dfit( double	*y, double *x, double *x_evaluate, double...
  function loess_dfitse (line 2744) | static void loess_dfitse( double	*y, double *x, double *x_evaluate, doub...
  function loess_grow (line 2757) | static void loess_grow(long	const * restrict parameter,long const*restri...
  function loess_ifit (line 2804) | static void loess_ifit(long const * restrict parameter, long const *rest...
  function loess_ise (line 2812) | static void loess_ise( double	*y, double *x, double *x_evaluate, double ...
  function loess_prune (line 2822) | static void loess_prune( long	*parameter, long *a, double	*xi, double *v...
  type pred_struct (line 2856) | struct pred_struct {
  function predict (line 2865) | void predict(double  *new_x, long M, struct loess_struct *lo, struct pre...
  function pred_free_mem (line 2954) | void pred_free_mem(struct	pred_struct	*pre){
  function comp (line 2962) | int comp(const void *d1_in, const void *d2_in) {
  function condition (line 2973) | static void condition(char	**surface, char *new_stat, char **trace_hat_i...
  function loess_raw (line 2997) | static void loess_raw( double	*y, double *x, double *weights, double *ro...
  function loess_ (line 3062) | static void loess_(double *y, double *x_, long *size_info, double *weights,
  function loess (line 3182) | void loess( struct	loess_struct	*lo) {
  function loess_free_mem (line 3222) | void loess_free_mem(struct loess_struct *lo) {
  function loess_summary (line 3239) | void loess_summary(struct loess_struct lo, FILE *ap) {
  function ibeta (line 3259) | double ibeta(double x, double a, double b) {
  function invigauss_quick (line 3365) | double invigauss_quick(double p) {
  function invibeta_quick (line 3385) | static double invibeta_quick(double p, double a, double b) {
  function invibeta (line 3398) | static double invibeta(double p,double  a,double  b) {
  function qt (line 3478) | static double qt(double p, double df) {
  type loess_struct (line 3487) | struct loess_struct
  type loess_struct (line 3488) | struct  loess_struct
  type loess_struct (line 3514) | struct loess_struct
  type loess_struct (line 3548) | struct loess_struct
  function apop_data (line 3570) | apop_data * loess_predict (apop_data *in, apop_model *m){
  function onerow (line 3605) | static double onerow(gsl_vector *v, void *sd){
  function loess_ll (line 3610) | static long double loess_ll(apop_data *d, apop_model *m){
  function apop_loess_est (line 3617) | static void apop_loess_est(apop_data *d, apop_model *out){
  function apop_loess_print (line 3642) | static void apop_loess_print(apop_model *in, FILE *out){
  function loess_prep (line 3646) | static void loess_prep(apop_data *data, apop_model *params){

FILE: model/apop_multinomial.c
  function binomial_cdf (line 35) | static long double binomial_cdf(apop_data *d, apop_model *est){
  function make_covar (line 44) | static void make_covar(apop_model *est){
  function multinomial_constraint (line 66) | static long double multinomial_constraint(apop_data *data, apop_model *b){
  function binomial_ll (line 87) | static double binomial_ll(gsl_vector *hits, void *paramv){
  function multinomial_ll (line 91) | static double multinomial_ll(gsl_vector *v, void *params){
  function multinomial_log_likelihood (line 100) | static long double multinomial_log_likelihood(apop_data *d, apop_model *...
  function multinomial_rng (line 130) | static int multinomial_rng(double *out, gsl_rng *r, apop_model* est){
  function multinomial_show (line 159) | static void multinomial_show(apop_model *est, FILE *out){
  function avs (line 168) | double avs(gsl_vector *v){return (double) apop_vector_sum(v);}
  function multinomial_estimate (line 173) | static void multinomial_estimate(apop_data * data,  apop_model *est){
  function multinom_prep (line 192) | static void multinom_prep(apop_data *data, apop_model *params){

FILE: model/apop_multivariate_normal.c
  function x_prime_sigma_x (line 19) | static double x_prime_sigma_x(gsl_vector *x, gsl_matrix *sigma){
  function apop_multinormal_ll (line 28) | static long double apop_multinormal_ll(apop_data *data, apop_model * m){
  function a_mean (line 53) | static double a_mean(gsl_vector * in){ return apop_vector_mean(in); }
  function multivariate_normal_estimate (line 56) | static void multivariate_normal_estimate(apop_data * data, apop_model *p){
  function mvnrng (line 65) | static int mvnrng(double *out, gsl_rng *r, apop_model *eps){
  function mvn_prep (line 85) | static void mvn_prep(apop_data *d, apop_model *m){
  function mvn_constraint (line 91) | static long double mvn_constraint(apop_data *d, apop_model *m){

FILE: model/apop_normal.c
  function positive_sigma_constraint (line 30) | static long double positive_sigma_constraint(apop_data *data, apop_model...
  function apply_me (line 38) | static double apply_me(double x, void *mu){ return x - *(double *)mu; }
  function apply_me2 (line 40) | static double apply_me2(double x, void *mu){ return gsl_pow_2(x - *(doub...
  function normal_log_likelihood (line 42) | static long double normal_log_likelihood(apop_data *d, apop_model *params){
  function get_mu_var (line 52) | void get_mu_var(apop_data *data, double *mu_out, double *var_out){
  function normal_estimate (line 77) | static void normal_estimate(apop_data * data, apop_model *est){
  function normal_cdf (line 99) | static long double normal_cdf(apop_data *d, apop_model *params){
  function normal_dlog_likelihood (line 108) | static void normal_dlog_likelihood(apop_data *d, gsl_vector *gradient, a...
  function apop_data (line 122) | apop_data * normal_predict(apop_data *dummy, apop_model *m){
  function normal_rng (line 136) | static int normal_rng(double *out, gsl_rng *r, apop_model *p){
  function normal_prep (line 141) | static void normal_prep(apop_data *data, apop_model *params){
  function lnx_minus_mu_squared (line 167) | static double lnx_minus_mu_squared(double x, void *mu_in){
  function lognormal_log_likelihood (line 171) | static long double lognormal_log_likelihood(apop_data *d, apop_model *pa...
  function lognormal_estimate (line 184) | static void lognormal_estimate(apop_data * data, apop_model *est){
  function lognormal_cdf (line 208) | static long double lognormal_cdf(apop_data *d, apop_model *params){
  function apop_data (line 219) | apop_data * lognormal_predict(apop_data *dummy, apop_model *m){
  function diff_sq (line 226) | double diff_sq(double x, void *mu){ return gsl_pow_2(log(x) - *(double*)...
  function lognormal_dlog_likelihood (line 228) | static void lognormal_dlog_likelihood(apop_data *d, gsl_vector *gradient...
  function lognormal_rng (line 239) | static int lognormal_rng(double *out, gsl_rng *r, apop_model *p){
  function lognormal_prep (line 244) | static void lognormal_prep(apop_data *data, apop_model *params){

FILE: model/apop_ols.c
  function prep_names (line 72) | static void prep_names (apop_model *e){
  function ols_shuffle (line 97) | static void ols_shuffle(apop_data *d){
  function ols_prep (line 110) | static void ols_prep(apop_data *d, apop_model *m){
  function ols_log_likelihood (line 129) | static long double ols_log_likelihood (apop_data *d, apop_model *p){
  function ols_score (line 175) | static void ols_score(apop_data *d, gsl_vector *gradient, apop_model *p){
  function xpxinvxpy (line 208) | static void xpxinvxpy(apop_data const*data, gsl_matrix *xpx, apop_data c...
  function ols_rng (line 273) | static int ols_rng(double *out, gsl_rng *r, apop_model *m){
  function apop_estimate_OLS (line 307) | static void apop_estimate_OLS(apop_data *inset, apop_model *ep){
  function apop_data (line 359) | apop_data *ols_predict(apop_data *in, apop_model *m){
  function apop_model (line 368) | apop_model *ols_param_models(apop_data *d, apop_model *m){
  function ols_print (line 385) | void ols_print(apop_model *m, FILE *ap){
  function apop_data (line 427) | static apop_data *prep_z(apop_data *x, apop_data *instruments){
  function apop_estimate_IV (line 447) | static void apop_estimate_IV(apop_data *inset, apop_model *ep){

FILE: model/apop_pmf.c
  function estim (line 79) | static void estim (apop_data *d, apop_model *out){
  function setup_cmf (line 92) | static void setup_cmf(apop_model *m){
  function draw (line 134) | static int draw (double *out, gsl_rng *r, apop_model *m){
  function are_equal (line 190) | static int are_equal(apop_data *left, apop_data *right){
  function find_in_data (line 225) | static int find_in_data(apop_data *searchme, apop_data *findme){//findme...
  function pmf_p (line 233) | static long double pmf_p(apop_data *d, apop_model *m){
  function pmf_cmf (line 270) | static long double pmf_cmf(apop_data *d, apop_model *m){
  function pmf_print (line 285) | static void pmf_print(apop_model *est, FILE *out){ apop_data_print(est->...
  function pmf_prep (line 287) | static void pmf_prep(apop_data * data, apop_model *model){
  function apop_data (line 340) | apop_data *apop_data_pmf_compress(apop_data *in){

FILE: model/apop_poisson.c
  function apply_me (line 14) | static double apply_me(double x, void *in){
  function poisson_log_likelihood (line 21) | static long double poisson_log_likelihood(apop_data *d, apop_model * p){
  function data_mean (line 30) | static double data_mean(apop_data *d){
  function poisson_estimate (line 42) | static void poisson_estimate(apop_data * data,  apop_model *est){
  function positive_beta_constraint (line 61) | static long double positive_beta_constraint(apop_data *returned_beta, ap...

FILE: model/apop_probit.c
  function apop_data (line 32) | static apop_data *get_category_table(apop_data *d){
  function probit_prep (line 42) | static void probit_prep(apop_data *d, apop_model *m){
  function biprobit_ll_row (line 83) | static double biprobit_ll_row(apop_data *r){
  function biprobit_log_likelihood (line 91) | static long double biprobit_log_likelihood(apop_data *d, apop_model *p){
  function unordered (line 101) | static double unordered(double in){ return in == val; }
  function multiprobit_log_likelihood (line 104) | static long double multiprobit_log_likelihood(apop_data *d, apop_model *p){
  function probit_dlog_likelihood (line 130) | static void probit_dlog_likelihood(apop_data *d, gsl_vector *gradient, a...
  function apop_data (line 166) | static apop_data *multilogit_expected(apop_data *in, apop_model *m){
  function logit_prep (line 201) | static void logit_prep(apop_data *d, apop_model *m){
  function find_index (line 206) | static size_t find_index(double in, double *m, size_t max){
  function one_logit_row (line 212) | double one_logit_row(apop_data *thisobservation, void *factor_list){
  function multilogit_log_likelihood (line 231) | static long double multilogit_log_likelihood(apop_data *d, apop_model *p){
  function get_draw_size (line 292) | static size_t get_draw_size(apop_model *in){
  function logit_rng (line 303) | static int logit_rng(double *out, gsl_rng *r, apop_model *m){

FILE: model/apop_t.c
  function apop_t_estimate (line 8) | static void apop_t_estimate(apop_data *d, apop_model *m){
  function one_t (line 25) | static double one_t(double in, void *params){
  function apop_tdist_llike (line 32) | static long double apop_tdist_llike(apop_data *d, apop_model *m){
  function apop_t_dist_draw (line 40) | int apop_t_dist_draw(double *out, gsl_rng *r, apop_model *m){
  function apop_t_dist_cdf (line 49) | static long double apop_t_dist_cdf(apop_data *in, apop_model *m){
  function apop_t_dist_constraint (line 58) | static long double apop_t_dist_constraint(apop_data *beta, apop_model *m){

FILE: model/apop_uniform.c
  function getminmax (line 18) | static void getminmax(apop_data *d, double *min, double *max){
  function unif_ll (line 26) | static long double unif_ll(apop_data *d, apop_model *m){
  function unif_p (line 36) | static long double unif_p(apop_data *d, apop_model *m){
  function uniform_estimate (line 47) | static void uniform_estimate(apop_data * data,  apop_model *est){
  function unif_cdf (line 55) | static long double unif_cdf(apop_data *d, apop_model *m){
  function uniform_rng (line 66) | static int uniform_rng(double *out, gsl_rng *r, apop_model* eps){
  function improper_uniform_estimate (line 91) | static void improper_uniform_estimate(apop_data * data,  apop_model *m){ }
  function improper_unif_ll (line 93) | static long double improper_unif_ll(apop_data *d, apop_model *m){ return...
  function improper_unif_cdf (line 94) | static long double improper_unif_cdf(apop_data *d, apop_model *m){ retur...
  function improper_unif_p (line 95) | static long double improper_unif_p (apop_data *d, apop_model *m){ return...
  function improper_uniform_rng (line 97) | static int improper_uniform_rng(double *out, gsl_rng *r, apop_model* eps){

FILE: model/apop_wishart.c
  function pos_def (line 7) | static long double pos_def(apop_data *data, apop_model *candidate){
  type wishartstruct_t (line 11) | typedef struct{
  function one_wishart_row (line 17) | static double one_wishart_row(gsl_vector *in, void *ws_in){
  function wishart_ll (line 35) | static long double wishart_ll(apop_data *in, apop_model *m){
  function apop_wishart_draw (line 52) | static int apop_wishart_draw(double *out, gsl_rng *r, apop_model *m){
  function wishart_constraint (line 103) | static long double wishart_constraint(apop_data *d, apop_model *m){
  function wishart_prep (line 113) | static void wishart_prep(apop_data *d, apop_model *m){
  function fixed_wishart_ll (line 118) | static long double fixed_wishart_ll(apop_data *in, apop_model *m){
  function wishart_estimate (line 130) | static void wishart_estimate(apop_data *d, apop_model *m){

FILE: model/apop_yule.c
  function yule_constraint (line 23) | static long double yule_constraint(apop_data *returned_beta, apop_model ...
  function apply_me (line 30) | static double apply_me(double pt, void *bb){
  function dapply_me (line 38) | static double dapply_me(double pt, void *bb){ return -gsl_sf_psi(pt+*(do...
  function yule_log_likelihood (line 40) | static long double yule_log_likelihood(apop_data *d, apop_model *m){
  function yule_dlog_likelihood (line 50) | static void yule_dlog_likelihood(apop_data *d, gsl_vector *gradient, apo...
  function yule_rng (line 63) | static int yule_rng( double *out, gsl_rng * r, apop_model *a){
  function yule_prep (line 71) | static void yule_prep(apop_data *data, apop_model *params){

FILE: model/apop_zipf.c
  function zipf_constraint (line 24) | static long double zipf_constraint(apop_data *returned_beta, apop_model ...
  function zipf_log_likelihood (line 31) | static long double zipf_log_likelihood(apop_data *d, apop_model *m){
  function zipf_rng (line 45) | static int zipf_rng(double *out, gsl_rng* r, apop_model *param){

FILE: tests/db_tests.c
  function test_data_to_db (line 33) | void test_data_to_db() {
  function test_uniform (line 51) | void test_uniform(apop_data *d){
  function db_to_text (line 75) | void db_to_text(){
  function test_blank_db_queries (line 133) | void test_blank_db_queries(){
  function test_nan_data (line 148) | void test_nan_data(){
  function test_printing (line 184) | static void test_printing(){
  function test_crosstabbing (line 230) | void test_crosstabbing() {
  function main (line 260) | int main(){

FILE: tests/distribution_tests.c
  function tfloor (line 26) | void tfloor(apop_model *dce){
  function estimate_model (line 30) | int estimate_model(apop_data *data, apop_model *dist, char *method, apop...
  function test_one_distribution (line 78) | void test_one_distribution(gsl_rng *r, apop_model *model, apop_model *tr...
  function test_cdf (line 108) | void test_cdf(gsl_rng *r, apop_model *m){//m is parameterized
  function test_distributions (line 132) | void test_distributions(gsl_rng *r){
  function got_bored (line 198) | static void got_bored(){ exit(0); }
  function main (line 200) | int main(int argc, char **argv){

FILE: tests/error_test.c
  function check_log (line 19) | void check_log(char*fn_to_check, char*msg){
  function check_data_error (line 26) | void check_data_error(apop_data *in, char should_be, char *fn_to_check, ...
  function reset_log (line 31) | void reset_log(){
  function main (line 38) | int main(){

FILE: tests/factors.c
  function main (line 8) | int main(){

FILE: tests/lognormal_test.c
  function test_lognormal (line 4) | void test_lognormal(gsl_rng *r){
  function main (line 39) | int main(){ test_lognormal(apop_rng_alloc(24)); }

FILE: tests/nist_tests.c
  function pontius (line 20) | void pontius(){
  function wampler1 (line 36) | void wampler1(){
  function numacc4 (line 49) | void numacc4(){
  function main (line 58) | int main(){

FILE: tests/rake_test.c
  function rake_check (line 5) | void rake_check(apop_model *base, apop_model *fitted){
  function test_raking_further (line 21) | void test_raking_further(){
  function weights_are_one (line 61) | double weights_are_one(apop_data *in){assert(gsl_vector_get(in->weights,...
  function equal_or_absent (line 62) | double equal_or_absent(apop_data *in){
  function compare_results (line 69) | double compare_results(apop_data *in, void *other, int index){
  function main (line 75) | int main(){

FILE: tests/sort_example.c
  function get_distance (line 14) | double get_distance(gsl_vector *v) {return apop_vector_distance(v);}
  function main (line 16) | int main(){

FILE: tests/sort_tests.c
  function check_sorting1 (line 3) | void check_sorting1(apop_data *d){
  function check_sorting2 (line 19) | void check_sorting2(apop_data *d){

FILE: tests/test_apop.c
  function v_pow10 (line 72) | void v_pow10(double *in){ *in = pow(10,*in);}
  function log_for_map (line 73) | double log_for_map(gsl_vector *v){apop_vector_log(v); return apop_sum(v);}
  function log_by_val (line 74) | double log_by_val(double x){return x;}
  function log_and_exp (line 76) | static void log_and_exp(gsl_rng *r){
  function test_percentiles (line 110) | void test_percentiles(){
  function test_score (line 127) | void test_score(){
  function test_normalizations (line 157) | void test_normalizations(gsl_vector *v){
  function test_skew_and_kurt (line 176) | void test_skew_and_kurt(gsl_rng *r){
  function test_listwise_delete (line 196) | void test_listwise_delete(){
  function wmt (line 262) | static void wmt(gsl_vector *v, gsl_vector *v2, gsl_vector *w, gsl_vector...
  function test_weigted_moments (line 271) | void test_weigted_moments(){
  function test_split_and_stack (line 297) | void test_split_and_stack(gsl_rng *r){
  function test_predicted_and_residual (line 446) | void test_predicted_and_residual(apop_model *est){
  function test_OLS (line 465) | void test_OLS(gsl_rng *r){
  function test_inversion (line 489) | void test_inversion(gsl_rng *r){
  function test_summarize (line 513) | void test_summarize(){
  function test_dot (line 527) | void test_dot(){
  function fill_p (line 552) | static void fill_p(apop_data *d, gsl_rng *r){
  function check_p (line 566) | static void check_p(apop_data *d, apop_data *dout){
  function apop_pack_test (line 580) | void apop_pack_test(gsl_rng *r){
  function test_model_fix_parameters (line 614) | void test_model_fix_parameters(gsl_rng *r){
  function test_linear_constraint (line 654) | void test_linear_constraint(){
  function broken_est (line 690) | static void broken_est(apop_data *d, apop_model *m){
  function super_broken_est (line 699) | static void super_broken_est(apop_data *d, apop_model *m){
  function test_jackknife (line 709) | void test_jackknife(gsl_rng *r){
  function test_multivariate_normal (line 751) | void test_multivariate_normal(){
  function common_binomial_bit (line 774) | static void common_binomial_bit(apop_model *out, int n, double p){
  function test_binomial (line 782) | void test_binomial(gsl_rng *r){
  function test_rownames (line 795) | void test_rownames(){
  function get_factor_index (line 817) | int get_factor_index(apop_data *flist, char *findme){
  function check_for_dummies (line 826) | static void check_for_dummies(apop_data *d, apop_data *dum, int offset){
  function dummies_and_factors (line 841) | void dummies_and_factors(){
  function test_vector_moving_average (line 858) | void test_vector_moving_average(){
  function test_transpose (line 873) | void test_transpose(){
  function apop_data (line 889) | apop_data *generate_probit_logit_sample (gsl_vector* true_params, gsl_rn...
  function test_unique_elements (line 909) | void test_unique_elements(){
  function test_probit_and_logit (line 935) | void test_probit_and_logit(gsl_rng *r){
  function test_resize (line 961) | void test_resize(){
  function test_mvn_gamma (line 989) | void test_mvn_gamma(){
  function test_default_rng (line 994) | void test_default_rng(gsl_rng *r) {
  function ran_uniform (line 1006) | double ran_uniform(double in, void *r){ return gsl_rng_uniform(r);}
  function negate (line 1007) | double negate(double in){ return -in;}
  function test_posdef (line 1009) | void test_posdef(gsl_rng *r){
  function set_to_index (line 1027) | static double set_to_index(double in, int index){ return index;}
  function is_even (line 1028) | static double is_even(double in){ return !((int)in%2);}
  function is_odd (line 1029) | static double is_odd(double in){ return (int)in%2;}
  function nan_even (line 1030) | static double nan_even(double in){ return is_even(in) ? GSL_NAN : in; }
  function row_manipulations (line 1032) | void row_manipulations(){
  function test_pmf (line 1048) | void test_pmf(){
  function test_arms (line 1072) | void test_arms(gsl_rng *r){
  function test_pmf_compress (line 1102) | void test_pmf_compress(gsl_rng *r){
  function test_vtables (line 1151) | void test_vtables(){
  function test_weighted_regression (line 1165) | void test_weighted_regression(apop_data *d, apop_model *e){
  function test_ols_offset (line 1174) | void test_ols_offset(gsl_rng *r){
  function main (line 1208) | int main(int argc, char **argv){

FILE: tests/test_kernel_ll.c
  function sum_of_parts (line 7) | long double sum_of_parts(apop_data *d1, apop_data *target){
  function go (line 19) | void go(apop_data *d1, apop_data *d2){
  function main (line 29) | int main(){

FILE: tests/update_via_rng.c
  function fake_ll (line 31) | long double fake_ll (apop_data *d, apop_model *m){
  function apop_data (line 35) | apop_data *apop_data_pmf_expand(apop_data *in, int factor){
  function deciles (line 50) | void deciles(apop_model *m1, apop_model *m2, double max){
  function betabinom (line 60) | void betabinom(){
  function gammafish (line 86) | void gammafish(){
  function make_draws (line 111) | void make_draws(){
  function main (line 131) | int main(){

FILE: transform/apop_coordinate_transform.c
  type apop_data (line 51) | typedef apop_data *(*d_to_d)(apop_data*);

FILE: transform/apop_cross.c
  type twop_s (line 36) | typedef struct {
  function twop_s (line 47) | twop_s unpack_a_draw(apop_data *d, apop_cross_settings *s){
  function twop_s (line 60) | static twop_s get_second(apop_data *d, char *splitpage, apop_cross_setti...
  function repaste (line 81) | static void repaste(twop_s dd){
  function cross_print (line 88) | void cross_print(apop_model *m, FILE *out){
  function cross_est (line 103) | static void cross_est(apop_data *d, apop_model *m){
  function cross_ll (line 112) | static long double cross_ll(apop_data *d, apop_model *m){
  function cross_p (line 121) | static long double cross_p(apop_data *d, apop_model *m){
  function cross_draw (line 129) | static int cross_draw(double *d, gsl_rng *r, apop_model *m){
  function apop_model (line 142) | apop_model *apop_model_cross_base(apop_model *mlist[]){

FILE: transform/apop_dconstrain.c
  function get_scaling (line 42) | static double get_scaling(apop_model *m){
  function dc_prep (line 67) | static void dc_prep(apop_data *d, apop_model *m){
  function dc_rng (line 81) | static int dc_rng(double *out, gsl_rng *r, apop_model *m){
  function constr (line 91) | static double constr(apop_data *d, void *csin){
  function is_stale (line 96) | static bool is_stale(apop_dconstrain_settings *cs, apop_model *m){ //do ...
  function dc_ll (line 119) | static long double dc_ll(apop_data *indata, apop_model* m){

FILE: transform/apop_fix_params.c
  function find_nans (line 13) | static double find_nans(double in){ return isnan(in); }
  function addin (line 15) | static void addin(apop_data *predict, size_t i, int j, size_t page){
  function find_missing (line 28) | static void find_missing(const apop_data *data, apop_data *predict, size...
  function apop_data (line 42) | static apop_data *apop_predict_table_prep(apop_data *in){
  function apop_data_predict_fill (line 67) | static void apop_data_predict_fill(apop_data *data, apop_data *predict){
  type apop_fix_params_settings (line 86) | typedef struct {
  function unpack (line 93) | static void unpack(apop_data *out, apop_model *m){
  function pack (line 101) | static void pack(apop_data *in, apop_model *m){
  function fix_params_draw (line 145) | static int fix_params_draw(double *out, gsl_rng* r, apop_model *eps){
  function fixed_est (line 151) | static void fixed_est(apop_data * data, apop_model *params){
  function fixed_param_show (line 158) | static void fixed_param_show(apop_model *m, FILE *out){
  function fixed_param_prep (line 170) | static void fixed_param_prep(apop_data *data, apop_model *params){
  function set_starting_point (line 182) | void set_starting_point(apop_data * in_params, apop_model * model_out, d...
  function apop_model (line 232) | apop_model * apop_model_fix_params(apop_model *model_in){
  function apop_model (line 275) | apop_model * apop_model_fix_params_get_base(apop_model *fixed_model){

FILE: transform/apop_mixture.c
  function apop_model (line 120) | apop_model *apop_model_mixture_base(apop_model **inlist){
  function mixture_show (line 141) | void mixture_show(apop_model *m, FILE *out){
  function mixture_prep (line 155) | static void mixture_prep(apop_data * data, apop_model *model){
  function unpack (line 174) | void unpack(apop_model *min){
  function apop_data (line 198) | apop_data* get_lls(apop_data *d, apop_model *m){
  function sum_exp_vector (line 222) | static long double sum_exp_vector(gsl_vector const *onerow){
  function mixture_log_likelihood (line 230) | static long double mixture_log_likelihood(apop_data *d, apop_model *mode...
  function mixture_draw (line 278) | static int mixture_draw (double *out, gsl_rng *r, apop_model *m){
  function mixture_cdf (line 293) | static long double mixture_cdf(apop_data *d, apop_model *model_in){
  function mixture_constraint (line 302) | static long double mixture_constraint(apop_data *data, apop_model *model...