SYMBOL INDEX (240 symbols across 21 files)

FILE: data/twpos-annotator-v0.1/json.php
  function json_indent (line 10) | function json_indent($json) {

FILE: src/cmu/arktweetnlp/RunTagger.java
  class RunTagger (line 28) | public class RunTagger {
    type Decoder (line 44) | public static enum Decoder { GREEDY, VITERBI }
    method die (line 61) | public static void die(String message) {
    method RunTagger (line 66) | public RunTagger() throws UnsupportedEncodingException {
    method detectAndSetInputFormat (line 70) | public void detectAndSetInputFormat(String tweetData) throws IOExcepti...
    method runTagger (line 81) | public void runTagger() throws IOException, ClassNotFoundException {
    method goDecode (line 149) | public void goDecode(ModelSentence mSent) {
    method runTaggerInEvalMode (line 158) | public void runTaggerInEvalMode() throws IOException, ClassNotFoundExc...
    method evaluateOOV (line 205) | private void evaluateOOV(Sentence lSent, ModelSentence mSent) throws F...
    method getconfusion (line 215) | private void getconfusion(Sentence lSent, ModelSentence mSent, int[][]...
    method evaluateSentenceTagging (line 225) | public void evaluateSentenceTagging(Sentence lSent, ModelSentence mSen...
    method formatConfidence (line 234) | private String formatConfidence(double confidence) {
    method outputJustTagging (line 242) | public void outputJustTagging(Sentence lSent, ModelSentence mSent) {
    method outputPrependedTagging (line 268) | public void outputPrependedTagging(Sentence lSent, ModelSentence mSent,
    method main (line 306) | public static void main(String[] args) throws IOException, ClassNotFou...
    method finalizeOptions (line 376) | public void finalizeOptions() throws IOException {
    method usage (line 393) | public static void usage() {
    method usage (line 397) | public static void usage(String extra) {
    method wordsInCluster (line 442) | public static HashSet<String> wordsInCluster() {

FILE: src/cmu/arktweetnlp/Tagger.java
  class Tagger (line 29) | public class Tagger {
    method loadModel (line 39) | public void loadModel(String modelFilename) throws IOException {
    class TaggedToken (line 47) | public static class TaggedToken {
    method tokenizeAndTag (line 56) | public List<TaggedToken> tokenizeAndTag(String text) {
    method main (line 82) | public static void main(String[] args) throws IOException {

FILE: src/cmu/arktweetnlp/Train.java
  class Train (line 17) | public class Train {
    method Train (line 36) | Train() {
    method doFeatureDumping (line 42) | public void doFeatureDumping() throws IOException {
    method doTraining (line 49) | public void doTraining() throws IOException {
    method readTrainingSentences (line 62) | public void readTrainingSentences(String filename) throws IOException {
    method constructLabelVocab (line 68) | public void constructLabelVocab() {
    method dumpFeatures (line 78) | public void dumpFeatures() throws IOException {
    method extractFeatures (line 87) | public void extractFeatures() throws IOException {
    method readWarmStartModel (line 98) | public void readWarmStartModel() throws IOException {
    method optimizationLoop (line 104) | public void optimizationLoop() {
    class GradientCalculator (line 121) | private class GradientCalculator implements DiffFunction {
      method domainDimension (line 123) | @Override
      method valueAt (line 128) | @Override
      method derivativeAt (line 138) | @Override
    method addL2regularizerGradient (line 151) | private void addL2regularizerGradient(double[] grad, double[] flatCoef...
    method regularizerValue (line 162) | private double regularizerValue(double[] flatCoefs) {
    class MyWeightsPrinter (line 170) | public class MyWeightsPrinter implements WeightsPrinter {
      method printWeights (line 172) | @Override
    method main (line 185) | public static void main(String[] args) throws IOException {
    method usage (line 235) | public static void usage() {

FILE: src/cmu/arktweetnlp/Twokenize.java
  class Twokenize (line 34) | public class Twokenize {
    method OR (line 82) | public static String OR(String... parts) {
    method splitEdgePunct (line 199) | public static String splitEdgePunct (String input) {
    class Pair (line 207) | private static class Pair<T1, T2> {
      method Pair (line 210) | public Pair(T1 x, T2 y) { first=x; second=y; }
    method simpleTokenize (line 214) | private static List<String> simpleTokenize (String text) {
    method addAllnonempty (line 284) | private static List<String> addAllnonempty(List<String> master, List<S...
    method squeezeWhitespace (line 293) | public static String squeezeWhitespace (String input){
    method splitToken (line 298) | private static List<String> splitToken (String token) {
    method tokenize (line 310) | public static List<String> tokenize(String text){
    method normalizeTextForTagger (line 319) | public static String normalizeTextForTagger(String text) {
    method tokenizeRawTweetText (line 332) | public static List<String> tokenizeRawTweetText(String text) {
    method main (line 338) | public static void main(String[] args) throws IOException {

FILE: src/cmu/arktweetnlp/impl/Model.java
  class Model (line 23) | public class Model {
    method Model (line 43) | public Model() {
    method startMarker (line 49) | public int startMarker() {
    method lockdownAfterFeatureExtraction (line 55) | public void lockdownAfterFeatureExtraction() {
    method allocateCoefs (line 61) | public void allocateCoefs(int numLabels, int numObsFeats) {
    method inferPosteriorGivenLabels (line 77) | public double[][] inferPosteriorGivenLabels(ModelSentence sentence) {
    method greedyDecode (line 101) | public void greedyDecode(ModelSentence sentence, boolean storeConfiden...
    method inferPosteriorForUnknownLabels (line 128) | public double[][] inferPosteriorForUnknownLabels(ModelSentence sentenc...
    method viterbiDecode (line 139) | public void viterbiDecode(ModelSentence sentence) {
    method getColumn (line 179) | private double[] getColumn(double[][] matrix, int col){
    method mbrDecode (line 186) | public void mbrDecode(ModelSentence sentence) {
    method computeLabelScores (line 195) | public void computeLabelScores(int t, ModelSentence sentence, double[]...
    method computeVitLabelScores (line 201) | public void computeVitLabelScores(int t, int prior, ModelSentence sent...
    method computeBiasScores (line 209) | public void computeBiasScores(double[] labelScores) {
    method computeEdgeScores (line 216) | public void computeEdgeScores(int t, ModelSentence sentence, double[] ...
    method viterbiEdgeScores (line 224) | public void viterbiEdgeScores(int prior, ModelSentence sentence, doubl...
    method computeObservedFeatureScores (line 231) | public void computeObservedFeatureScores(int t, ModelSentence sentence...
    method ThreewiseMultiply (line 240) | public double[] ThreewiseMultiply(double[] a, double[] b, double[] c) {
    method computeGradient (line 254) | public void computeGradient(ModelSentence sentence, double[] grad) {
    method computeLogLik (line 276) | public double computeLogLik(ModelSentence s) {
    method setCoefsFromFlat (line 292) | public void setCoefsFromFlat(double[] flatCoefs) {
    method convertCoefsToFlat (line 308) | public double[] convertCoefsToFlat() {
    method flatIDsize (line 328) | public int flatIDsize() {
    method biasFeature_to_flatID (line 334) | private int biasFeature_to_flatID(int label) {
    method edgeFeature_to_flatID (line 337) | private int edgeFeature_to_flatID(int before, int current) {
    method observationFeature_to_flatID (line 341) | private int observationFeature_to_flatID(int featID, int label) {
    method saveModelAsText (line 383) | public void saveModelAsText(String outputFilename) throws IOException {
    method loadModelFromText (line 407) | public static Model loadModelFromText(String filename) throws IOExcept...
    method copyCoefsForIntersectingFeatures (line 464) | public static void copyCoefsForIntersectingFeatures(Model sourceModel,...

FILE: src/cmu/arktweetnlp/impl/ModelSentence.java
  class ModelSentence (line 12) | public class ModelSentence {
    method ModelSentence (line 34) | public ModelSentence(int T) {

FILE: src/cmu/arktweetnlp/impl/OWLQN.java
  class OWLQN (line 44) | public class OWLQN {
    type TerminationCriterion (line 54) | interface TerminationCriterion {
      method getValue (line 55) | double getValue(OptimizerState state, StringBuilder out);
    class RelativeMeanImprovementCriterion (line 58) | static class RelativeMeanImprovementCriterion implements TerminationCr...
      method RelativeMeanImprovementCriterion (line 62) | RelativeMeanImprovementCriterion() {
      method RelativeMeanImprovementCriterion (line 66) | RelativeMeanImprovementCriterion(int numItersToAvg) {
      method getValue (line 71) | public double getValue(OptimizerState state, StringBuilder out) {
    type WeightsPrinter (line 100) | public interface WeightsPrinter {
      method printWeights (line 101) | public void printWeights();
    method OWLQN (line 107) | public OWLQN(boolean quiet) {
    method OWLQN (line 113) | public OWLQN() {
    method OWLQN (line 117) | public OWLQN(TerminationCriterion termCrit, boolean quiet) {
    method setQuiet (line 126) | public void setQuiet(boolean q) {
    method minimize (line 148) | public double[] minimize(DiffFunction function, double[] initial, doub...
    method arrayEquals (line 210) | private boolean arrayEquals(double [] x, double [] y){
    method setMaxIters (line 222) | public void setMaxIters(int maxIters) {
    method getMaxIters (line 229) | public int getMaxIters() {
    method setWeightsPrinting (line 234) | public void setWeightsPrinting(WeightsPrinter printer) {
    method setConstrained (line 241) | public static void setConstrained(boolean constrained) {
    method setConstrained (line 250) | public static void setConstrained(int numUnconstrainedWeights) {
    method isConstrained (line 255) | public static boolean isConstrained() {
    method projectWeights (line 262) | protected static double[] projectWeights(double[] c) {
    method project (line 300) | public static double[] project(double[] c) {
  class OptimizerState (line 327) | class OptimizerState {
    method arrayToString (line 344) | private String arrayToString(double [] arr){
    method printStateValues (line 354) | private void printStateValues() {
    method mapDirByInverseHessian (line 373) | void mapDirByInverseHessian() {
    method makeSteepestDescDir (line 400) | void makeSteepestDescDir() {
    method fixDirSigns (line 429) | void fixDirSigns() {
    method updateDir (line 442) | void updateDir() {
    method dirDeriv (line 463) | double dirDeriv() {
    method getNextPoint (line 490) | private boolean getNextPoint(double alpha) {
    method evalL1 (line 510) | double evalL1() {
    method backTrackingLineSearch (line 529) | void backTrackingLineSearch() {
    method shift (line 581) | void shift() {
    method getValue (line 629) | double getValue() { return value; }
    method OptimizerState (line 631) | OptimizerState(DiffFunction f, double[] init, int m, double l1weight, ...

FILE: src/cmu/arktweetnlp/impl/Sentence.java
  class Sentence (line 10) | public class Sentence {
    method Sentence (line 15) | public Sentence() {
    method T (line 20) | public int T() {
    method toString (line 24) | public String toString() {

FILE: src/cmu/arktweetnlp/impl/Vocabulary.java
  class Vocabulary (line 9) | public class Vocabulary {
    method Vocabulary (line 15) | Vocabulary() {
    method lock (line 20) | public void lock() {
    method isLocked (line 23) | public boolean isLocked() { return isLocked; }
    method size (line 25) | public int size() {
    method num (line 36) | public int num(String featname) {
    method name (line 49) | public String name(int num) {
    method contains (line 57) | public boolean contains(String name) {
    method toString (line 62) | public String toString() {
    method numStrict (line 67) | public int numStrict(String string) {

FILE: src/cmu/arktweetnlp/impl/features/FeatureExtractor.java
  class FeatureExtractor (line 18) | public class FeatureExtractor {
    method FeatureExtractor (line 26) | public FeatureExtractor(Model model, boolean isTrainingTime) throws IO...
    method computeFeatures (line 42) | public void computeFeatures(Sentence linguisticSentence, ModelSentence...
    method computeCheatingEdgeFeatures (line 59) | private void computeCheatingEdgeFeatures(Sentence sentence, ModelSente...
    method computeObservationFeatures (line 67) | private void computeObservationFeatures(Sentence sentence, ModelSenten...
    type FeatureExtractorInterface (line 102) | public interface FeatureExtractorInterface {
      method addFeatures (line 112) | public void addFeatures(List<String> tokens, PositionFeaturePairs po...
    class PositionFeaturePairs (line 115) | public static class PositionFeaturePairs {
      method PositionFeaturePairs (line 120) | public PositionFeaturePairs() {
      method add (line 125) | public void add(int labelIndex, String featureID) {
      method add (line 128) | public void add(int labelIndex, String featureID, double featureValu...
      method size (line 133) | public int size() { return featureNames.size(); }
    method initializeFeatureExtractors (line 143) | private void initializeFeatureExtractors() throws IOException {

FILE: src/cmu/arktweetnlp/impl/features/FeatureUtil.java
  class FeatureUtil (line 17) | public class FeatureUtil {
    method normalize (line 25) | public static ArrayList<String> normalize(List<String> toks){
    method normalize (line 37) | public static String normalize(String str) {
    method normalizecap (line 51) | public static ArrayList<String> normalizecap(List<String> toks){
    method normalizecap (line 60) | public static String normalizecap(String str) {
    method fuzztoken (line 77) | public static ArrayList<String> fuzztoken(String tok, boolean apos) {

FILE: src/cmu/arktweetnlp/impl/features/MetaphoneFeatures.java
  class MetaphoneFeatures (line 12) | public class MetaphoneFeatures {
    method getMetaphone (line 18) | public static Metaphone getMetaphone() {
    method getDblMetaphone (line 25) | public static DoubleMetaphone getDblMetaphone() {
    method MetaphoneNum (line 32) | private String MetaphoneNum(String str){ //change this eventually
    class MetaphoneLexical (line 46) | public static class MetaphoneLexical implements FeatureExtractorInterf...
      method addFeatures (line 47) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...

FILE: src/cmu/arktweetnlp/impl/features/MiscFeatures.java
  class MiscFeatures (line 11) | public class MiscFeatures {
    class NextWord (line 13) | public static class NextWord implements FeatureExtractorInterface{
      method addFeatures (line 14) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class Next2Words (line 25) | public static class Next2Words implements FeatureExtractorInterface{
      method addFeatures (line 26) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class PrevWord (line 39) | public static class PrevWord implements FeatureExtractorInterface{
      method addFeatures (line 40) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class Prev2Words (line 52) | public static class Prev2Words implements FeatureExtractorInterface{
      method addFeatures (line 53) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class PrevNext (line 64) | public static class PrevNext implements FeatureExtractorInterface{
      method addFeatures (line 65) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class CapitalizationFeatures (line 80) | public static class CapitalizationFeatures implements FeatureExtractor...
      method addFeatures (line 81) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class SimpleOrthFeatures (line 119) | public static class SimpleOrthFeatures implements FeatureExtractorInte...
      method addFeatures (line 125) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class URLFeatures (line 156) | public static class URLFeatures implements FeatureExtractorInterface {
      method addFeatures (line 159) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class WordformFeatures (line 171) | public static class WordformFeatures implements FeatureExtractorInterf...
      method addFeatures (line 172) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
      method Xxdshape (line 183) | private String Xxdshape(String tok) {
      method charclassshape (line 187) | private String charclassshape(String tok) {
    class NgramPrefix (line 195) | public static class NgramPrefix implements FeatureExtractorInterface {
      method NgramPrefix (line 197) | public NgramPrefix(int i) {
      method addFeatures (line 200) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class NgramSuffix (line 213) | public static class NgramSuffix implements FeatureExtractorInterface {
      method NgramSuffix (line 215) | public NgramSuffix(int i) {
      method addFeatures (line 218) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class Positions (line 233) | public static class Positions implements FeatureExtractorInterface {
      method addFeatures (line 234) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...

FILE: src/cmu/arktweetnlp/impl/features/TagDictionary.java
  class TagDictionary (line 9) | public class TagDictionary {
    method instance (line 25) | public static TagDictionary instance() {
    method loadData (line 29) | static Map<String, List<String>> loadData() throws IOException {
    method main (line 58) | public static void main(String args[]) {

FILE: src/cmu/arktweetnlp/impl/features/WordClusterPaths.java
  class WordClusterPaths (line 18) | public class WordClusterPaths implements FeatureExtractorInterface {
    method WordClusterPaths (line 25) | public WordClusterPaths() throws IOException {
    method addFeatures (line 41) | public void addFeatures(List<String> tokens, PositionFeaturePairs pair...

FILE: src/cmu/arktweetnlp/impl/features/WordListFeatures.java
  class WordListFeatures (line 15) | public class WordListFeatures {
    class POSTagDict (line 17) | public static class POSTagDict implements FeatureExtractorInterface {
      method addFeatures (line 20) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class Listofnames (line 59) | public static class Listofnames implements FeatureExtractorInterface {
      method Listofnames (line 62) | public Listofnames(String str) throws IOException {
      method addFeatures (line 66) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    class MetaphonePOSDict (line 77) | public static class MetaphonePOSDict implements FeatureExtractorInterf...
      method addFeatures (line 78) | public void addFeatures(List<String> tokens, PositionFeaturePairs pa...
    method initDict (line 96) | private static HashSet<String> initDict(String dict) throws IOException {

FILE: src/cmu/arktweetnlp/io/CoNLLReader.java
  class CoNLLReader (line 21) | public class CoNLLReader {
    method readFile (line 22) | public static ArrayList<Sentence> readFile(String filename) throws IOE...
    method sentenceFromLines (line 48) | private static Sentence sentenceFromLines(List<String> lines) {

FILE: src/cmu/arktweetnlp/io/JsonTweetReader.java
  class JsonTweetReader (line 16) | public class JsonTweetReader  {
    method JsonTweetReader (line 19) | public JsonTweetReader() {
    method getText (line 29) | public String getText(String tweetJson) {
    method isJson (line 50) | public boolean isJson(String isThisJson) {

FILE: src/cmu/arktweetnlp/util/BasicFileIO.java
  class BasicFileIO (line 17) | public class BasicFileIO {
    method openFileToRead (line 26) | public static BufferedReader openFileToRead(String file) {
    method openFileToReadUTF8 (line 43) | public static BufferedReader openFileToReadUTF8(String file) {
    method openFileToWrite (line 61) | public static BufferedWriter openFileToWrite(String file) {
    method openFileToWriteUTF8 (line 78) | public static BufferedWriter openFileToWriteUTF8(String file) {
    method closeFileAlreadyRead (line 96) | public static void closeFileAlreadyRead(BufferedReader bReader) {
    method closeFileAlreadyWritten (line 106) | public static void closeFileAlreadyWritten(BufferedWriter bWriter) {
    method getLine (line 116) | public static String getLine(BufferedReader bReader) {
    method getLine (line 128) | public static String getLine(JsonParser jParse) {
    method writeLine (line 160) | public static void writeLine(BufferedWriter bWriter, String line) {
    method writeSerializedObject (line 170) | public static void writeSerializedObject(String file, Object object) {
    method readSerializedObject (line 188) | public static Object readSerializedObject(String file) {
    method readSerializedObject (line 197) | public static Object readSerializedObject(InputStream iFile) {
    method getResourceReader (line 229) | public static BufferedReader getResourceReader(String resourceName) th...
    method openFileOrResource (line 242) | public static BufferedReader openFileOrResource(String fileOrResource)...

FILE: src/cmu/arktweetnlp/util/Util.java
  class Util (line 9) | public class Util {
    method p (line 10) | public static void p(Object x) { System.out.println(x); }
    method p (line 11) | public static void p(String[] x) { p(Arrays.toString(x)); }
    method p (line 12) | public static void p(double[] x) { p(Arrays.toString(x)); }
    method p (line 13) | public static void p(int[] x) { p(Arrays.toString(x)); }
    method p (line 14) | public static void p(double[][] x) {
    method sp (line 23) | public static String sp(double[] x) {
    method p (line 30) | public static void p(String x) { System.out.println(x); }