SYMBOL INDEX (51 symbols across 10 files)

FILE: docs/docsearch.js
  function matchedWords (line 54) | function matchedWords(hit) {
  function updateHitURL (line 73) | function updateHitURL(hit) {

FILE: docs/pkgdown.js
  function paths (line 42) | function paths(pathname) {
  function prefix_length (line 53) | function prefix_length(needle, haystack) {
  function changeTooltipMessage (line 72) | function changeTooltipMessage(element, msg) {

FILE: src/DecontX.cpp
  function decontXEM (line 7) | Rcpp::List decontXEM(const Eigen::MappedSparseMatrix<double> &counts,
  function decontXLogLik (line 159) | double decontXLogLik(const Eigen::MappedSparseMatrix<double> &counts,
  function decontXInitialize (line 221) | Rcpp::List decontXInitialize(const Eigen::MappedSparseMatrix<double> &co...
  function calculateNativeMatrix (line 283) | Eigen::SparseMatrix<double> calculateNativeMatrix(const Eigen::MappedSpa...

FILE: src/RcppExports.cpp
  function RcppExport (line 16) | RcppExport SEXP _celda_decontXEM(SEXP countsSEXP, SEXP counts_colsumsSEX...
  function RcppExport (line 36) | RcppExport SEXP _celda_decontXLogLik(SEXP countsSEXP, SEXP thetaSEXP, SE...
  function RcppExport (line 52) | RcppExport SEXP _celda_decontXInitialize(SEXP countsSEXP, SEXP thetaSEXP...
  function RcppExport (line 66) | RcppExport SEXP _celda_calculateNativeMatrix(SEXP countsSEXP, SEXP theta...
  function RcppExport (line 82) | RcppExport SEXP _celda_cG_calcGibbsProbY_Simple(SEXP countsSEXP, SEXP nG...
  function RcppExport (line 103) | RcppExport SEXP _celda_cG_CalcGibbsProbY_ori(SEXP indexSEXP, SEXP counts...
  function RcppExport (line 126) | RcppExport SEXP _celda_cG_CalcGibbsProbY_fastRow(SEXP indexSEXP, SEXP co...
  function RcppExport (line 149) | RcppExport SEXP _celda_cG_CalcGibbsProbY(SEXP indexSEXP, SEXP countsSEXP...
  function RcppExport (line 172) | RcppExport SEXP _celda_eigenMatMultInt(SEXP ASEXP, SEXP BSEXP) {
  function RcppExport (line 184) | RcppExport SEXP _celda_eigenMatMultNumeric(SEXP ASEXP, SEXP BSEXP) {
  function RcppExport (line 196) | RcppExport SEXP _celda_fastNormProp(SEXP R_countsSEXP, SEXP R_alphaSEXP) {
  function RcppExport (line 208) | RcppExport SEXP _celda_fastNormPropLog(SEXP R_countsSEXP, SEXP R_alphaSE...
  function RcppExport (line 220) | RcppExport SEXP _celda_fastNormPropSqrt(SEXP R_countsSEXP, SEXP R_alphaS...
  function RcppExport (line 232) | RcppExport SEXP _celda_nonzero(SEXP R_countsSEXP) {
  function RcppExport (line 243) | RcppExport SEXP _celda_colSumByGroupSparse(SEXP countsSEXP, SEXP groupSE...
  function RcppExport (line 256) | RcppExport SEXP _celda_rowSumByGroupSparse(SEXP countsSEXP, SEXP groupSE...
  function RcppExport (line 269) | RcppExport SEXP _celda_colSumByGroupChangeSparse(SEXP countsSEXP, SEXP p...
  function RcppExport (line 284) | RcppExport SEXP _celda_rowSumByGroupChangeSparse(SEXP countsSEXP, SEXP p...
  function RcppExport (line 339) | RcppExport void R_init_celda(DllInfo *dll) {

FILE: src/cG_calcGibbsProbY.cpp
  function NumericVector (line 8) | NumericVector cG_calcGibbsProbY_Simple(const IntegerMatrix counts,
  function NumericVector (line 53) | NumericVector cG_CalcGibbsProbY_ori(const int index,
  function NumericVector (line 125) | NumericVector cG_CalcGibbsProbY_fastRow(const int index,
  function NumericVector (line 187) | NumericVector cG_CalcGibbsProbY(const int index,

FILE: src/eigenMatMultInt.cpp
  function SEXP (line 11) | SEXP eigenMatMultInt(const Eigen::Map<Eigen::MatrixXd> A, const Eigen::M...
  function SEXP (line 23) | SEXP eigenMatMultNumeric(const Eigen::Map<Eigen::MatrixXd> A, const Eige...

FILE: src/matrixNorm.cpp
  function SEXP (line 11) | SEXP fastNormProp(NumericMatrix R_counts, double R_alpha) {
  function SEXP (line 36) | SEXP fastNormPropLog(NumericMatrix R_counts, double R_alpha) {
  function SEXP (line 61) | SEXP fastNormPropSqrt(NumericMatrix R_counts, double R_alpha) {
  function SEXP (line 86) | SEXP nonzero(NumericMatrix R_counts) {

FILE: src/matrixSums.c
  function SEXP (line 5) | SEXP _rowSumByGroup(SEXP R_x, SEXP R_group)
  function SEXP (line 50) | SEXP _colSumByGroup(SEXP R_x, SEXP R_group)
  function SEXP (line 97) | SEXP _rowSumByGroupChange(SEXP R_x, SEXP R_px, SEXP R_group, SEXP R_pgroup)
  function SEXP (line 147) | SEXP _colSumByGroupChange(SEXP R_x, SEXP R_px, SEXP R_group, SEXP R_pgroup)
  function SEXP (line 198) | SEXP _rowSumByGroup_numeric(SEXP R_x, SEXP R_group)
  function SEXP (line 240) | SEXP _colSumByGroup_numeric(SEXP R_x, SEXP R_group)
  function SEXP (line 282) | SEXP _rowSumByGroupChange_numeric(SEXP R_x, SEXP R_px, SEXP R_group, SEX...
  function SEXP (line 332) | SEXP _colSumByGroupChange_numeric(SEXP R_x, SEXP R_px, SEXP R_group, SEX...

FILE: src/matrixSumsSparse.cpp
  function colSumByGroupSparse (line 9) | Rcpp::NumericMatrix colSumByGroupSparse(
  function rowSumByGroupSparse (line 44) | Rcpp::NumericMatrix rowSumByGroupSparse(
  function colSumByGroupChangeSparse (line 85) | Rcpp::NumericMatrix colSumByGroupChangeSparse(
  function rowSumByGroupChangeSparse (line 141) | Rcpp::NumericMatrix rowSumByGroupChangeSparse(

FILE: src/perplexity.c
  function SEXP (line 5) | SEXP _perplexityG(SEXP R_x, SEXP R_phi, SEXP R_psi, SEXP R_group)