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Repository: cmbant/getdist
Branch: master
Commit: 1be8c73cc17d
Files: 79
Total size: 13.9 MB
Directory structure:
gitextract_agenpta6/
├── .gitattributes
├── .github/
│ └── workflows/
│ └── tests.yml
├── .gitignore
├── .pre-commit-config.yaml
├── .readthedocs.yaml
├── .vscode/
│ ├── extensions.json
│ ├── launch.json
│ ├── settings.json
│ └── tasks.json
├── CONTRIBUTING.md
├── LICENCE.txt
├── MANIFEST.in
├── README.rst
├── codemeta.json
├── docs/
│ ├── index.html
│ ├── markdown_builder.py
│ ├── plot_gallery.html
│ ├── plot_gallery.ipynb
│ └── source/
│ ├── analysis_settings.rst
│ ├── arviz_integration.rst
│ ├── chains.rst
│ ├── conf.py
│ ├── covmat.rst
│ ├── densities.rst
│ ├── gaussian_mixtures.rst
│ ├── gui.rst
│ ├── index.rst
│ ├── inifile.rst
│ ├── intro.rst
│ ├── mcsamples.rst
│ ├── paramnames.rst
│ ├── parampriors.rst
│ ├── plots.rst
│ └── types.rst
├── getdist/
│ ├── analysis_defaults.ini
│ ├── arviz_wrapper.py
│ ├── chain_grid.py
│ ├── chains.py
│ ├── cobaya_interface.py
│ ├── command_line.py
│ ├── convolve.py
│ ├── covcomb.py
│ ├── covmat.py
│ ├── covscale.py
│ ├── densities.py
│ ├── distparam_template.ini
│ ├── gaussian_mixtures.py
│ ├── gui/
│ │ ├── SyntaxHighlight.py
│ │ ├── images/
│ │ │ └── GetDistGUI.icns
│ │ ├── mainwindow.py
│ │ └── streamlit_app.py
│ ├── inifile.py
│ ├── kde_bandwidth.py
│ ├── matplotlib_ext.py
│ ├── mcsamples.py
│ ├── paramnames.py
│ ├── parampriors.py
│ ├── plots.py
│ ├── styles/
│ │ ├── planck.paramnames
│ │ ├── planck.py
│ │ ├── sfmath.sty
│ │ └── tab10.py
│ ├── tests/
│ │ ├── getdist_test.py
│ │ ├── test_arviz_wrapper.py
│ │ └── test_distributions.py
│ ├── types.py
│ └── yaml_tools.py
├── pyproject.toml
├── requirements.txt
├── scripts/
│ ├── create_mac_dmg.sh
│ ├── create_windows_msi.py
│ ├── fix_qt_bundle_ambiguity.sh
│ ├── fix_qt_frameworks.sh
│ ├── multiprocessing_hook.py
│ ├── notarize_mac_app.sh
│ ├── run_plot_gallery.py
│ ├── sign_mac_app.sh
│ └── sign_windows_app.py
└── setup.py
================================================
FILE CONTENTS
================================================
================================================
FILE: .gitattributes
================================================
*.rst text
*.txt text
*.py text eol=lf
*.ini text
*.html text
*.yml text
*.in text
================================================
FILE: .github/workflows/tests.yml
================================================
name: tests
on:
push:
paths-ignore:
- "docs/**"
pull_request:
paths-ignore:
- "docs/**"
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
include:
- name: "Latest Python 3.14"
os: ubuntu-latest
python-version: "3.14"
- name: "OS X Python 3.10"
os: macos-latest
python-version: "3.10"
- name: "Windows Python 3.x"
os: windows-latest
python-version: 3.x
steps:
- uses: actions/checkout@v5
with:
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python-version }}
allow-prereleases: true
- name: Ruff Lint
if: matrix.os == 'ubuntu-latest'
uses: astral-sh/ruff-action@v4
with:
src: "./getdist"
- name: Ruff Format Check
if: matrix.os == 'ubuntu-latest'
uses: astral-sh/ruff-action@v4
with:
src: "./getdist"
args: "format --check"
- name: Install dependencies
run: |
python --version
pip install .
git clone --depth=1 https://github.com/cmbant/getdist_testchains
- name: Install PyMC and ArviZ (Unix only)
if: matrix.os == 'ubuntu-latest'
run: |
pip install pymc arviz
- name: Run tests
run: |
getdist --help
python -m unittest getdist.tests.getdist_test
- name: Run ArviZ wrapper tests (Unix only)
if: matrix.os == 'ubuntu-latest'
run: |
python -m unittest getdist.tests.test_arviz_wrapper
deploy:
needs: build
runs-on: ubuntu-latest
if: github.repository_owner == 'cmbant' && github.event_name == 'push' && startsWith(github.ref, 'refs/tags/')
permissions:
id-token: write
steps:
- uses: actions/checkout@v5
- name: Set up Python
uses: actions/setup-python@v6
- name: Install dependencies
run: |
python -m pip install -U pip
python -m pip install -U build twine
- name: Build package
run: python -m build
- name: Publish package
uses: pypa/gh-action-pypi-publish@release/v1
================================================
FILE: .gitignore
================================================
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
# Distribution / packaging
env/
build*
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
.pytest_cache/
.ruff_cache/
testfile*
*.ipynb
!plot_gallery.ipynb
mytest.py
*.lock
config.ini
make_latex.py
# PyInstaller
# Usually these files are written by a python script from a template
# before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec
# Installer logs
pip-log.txt
pip-delete-this-directory.txt
# Unit test / coverage reports
htmlcov/
.tox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*,cover
# Django stuff:
*.log
# Sphinx documentation
docs/_build/
# PyBuilder
target/
# Backups
*~
default_chains
.idea
Untitled*
*.pdf
*checkpoint*
_*
================================================
FILE: .pre-commit-config.yaml
================================================
repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v6.0.0
hooks:
- id: trailing-whitespace
exclude: '^(cobaya|tests)/.*\.(py|ipynb)$'
- id: end-of-file-fixer
exclude: '^(cobaya|tests)/.*\.(py|ipynb)$'
- id: check-added-large-files
- id: check-merge-conflict
- repo: https://github.com/asottile/pyupgrade
rev: v3.21.2
hooks:
- id: pyupgrade
args: [--py310-plus]
- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.15.2
hooks:
- id: ruff-check
args: [--fix, --exit-non-zero-on-fix]
- id: ruff-format
================================================
FILE: .readthedocs.yaml
================================================
version: 2
build:
os: "ubuntu-24.04"
tools:
python: "3.13"
jobs:
pre_build:
- python docs/markdown_builder.py --output docs/getdist_docs_combined.md
python:
install:
- method: pip
path: .
extra_requirements:
- docs
formats: all
sphinx:
configuration: docs/source/conf.py
================================================
FILE: .vscode/extensions.json
================================================
{
"recommendations": [
"ms-python.python",
"ms-python.vscode-pylance",
"ms-python.debugpy",
"charliermarsh.ruff"
]
}
================================================
FILE: .vscode/launch.json
================================================
{
"version": "0.2.0",
"configurations": [
{
"name": "Streamlit App",
"type": "debugpy",
"request": "launch",
"module": "streamlit",
"args": [
"run",
"getdist/gui/streamlit_app.py",
"--server.runOnSave=true"
],
"console": "integratedTerminal",
"justMyCode": true,
"python": "${command:python.interpreterPath}"
},
{
"name": "Debug Streamlit App",
"type": "debugpy",
"request": "launch",
"module": "streamlit",
"args": [
"run",
"getdist/gui/streamlit_app.py",
"--server.runOnSave=true"
],
"console": "integratedTerminal",
"justMyCode": false,
"showReturnValue": true,
"redirectOutput": true,
"python": "${command:python.interpreterPath}"
},
{
"name": "Python: Current File",
"type": "debugpy",
"request": "launch",
"program": "${file}",
"console": "integratedTerminal",
"justMyCode": true,
"python": "${command:python.interpreterPath}"
},
{
"name": "GetDist Tests",
"type": "debugpy",
"request": "launch",
"module": "unittest",
"args": [
"getdist.tests.getdist_test"
],
"console": "integratedTerminal",
"justMyCode": true,
"python": "${command:python.interpreterPath}",
"cwd": "${workspaceFolder}"
},
{
"name": "Debug GetDist Tests",
"type": "debugpy",
"request": "launch",
"module": "unittest",
"args": [
"getdist.tests.getdist_test"
],
"console": "integratedTerminal",
"justMyCode": false,
"showReturnValue": true,
"redirectOutput": true,
"python": "${command:python.interpreterPath}",
"cwd": "${workspaceFolder}"
}
]
}
================================================
FILE: .vscode/settings.json
================================================
{
"files.trimTrailingWhitespace": true,
"files.trimFinalNewlines": true,
"files.exclude": {
".pytest_cache/": true,
".ruff_cache/": true,
".idea": true,
"**/__pycache__/": true,
"build*/": true,
"default_chains": true,
"*.egg*": true,
"**/.ipynb_checkpoints": true,
"**/_summaries*": true,
"dist/": true,
"**/_build": true,
"**/uk.lock": true
},
"search.exclude": {
".pytest_cache/": true,
".ruff_cache/": true,
".idea": true,
"**/__pycache__/": true,
"build*/": true,
"default_chains": true,
"*.egg*": true,
"**/.ipynb_checkpoints": true,
"**/_summaries*": true,
"dist/": true,
"**/_build": true,
"**/uk.lock": true
},
"python.analysis.extraPaths": [
"${workspaceFolder}"
],
"python.analysis.typeCheckingMode": "basic",
"python.analysis.diagnosticSeverityOverrides": {
"reportGeneralTypeIssues": "none",
"reportOptionalMemberAccess": "none",
"reportOptionalSubscript": "none",
"reportOptionalOperand": "none",
"reportOptionalIterable": "none",
"reportUnknownMemberType": "none",
"reportUnknownArgumentType": "none",
"reportUnknownVariableType": "none",
"reportUnknownParameterType": "none",
"reportMissingTypeStubs": "none",
"reportUnknownLambdaType": "none",
"reportImportCycles": "none",
"reportOptionalCall": "none",
"reportOptionalContextManager": "none",
"reportTypedDictNotRequiredAccess": "none",
"reportArgumentType": "none",
"reportOperatorIssue": "none",
"reportAttributeAccessIssue": "none",
"reportCallIssue": "none"
},
"editor.formatOnSave": true,
"editor.codeActionsOnSave": {
"source.fixAll.ruff": "explicit",
"source.organizeImports.ruff": "explicit"
},
"ruff.organizeImports": true,
"ruff.enable": true,
"ruff.lint.enable": true,
"[python]": {
"editor.defaultFormatter": "charliermarsh.ruff",
"editor.rulers": [
120
],
},
"python.terminal.activateEnvironment": true,
"github-actions.use-enterprise": true
}
================================================
FILE: .vscode/tasks.json
================================================
{
"version": "2.0.0",
"tasks": [
{
"label": "Run Streamlit App",
"type": "shell",
"command": "streamlit run getdist/gui/streamlit_app.py --server.runOnSave=true",
"group": {
"kind": "build",
"isDefault": true
},
"presentation": {
"reveal": "always",
"panel": "new"
},
"problemMatcher": []
},
{
"label": "Run GetDist Tests",
"type": "shell",
"command": "python -m unittest getdist.tests.getdist_test",
"group": "test",
"presentation": {
"reveal": "always",
"panel": "new"
},
"problemMatcher": []
},
{
"label": "Run All Tests",
"type": "shell",
"command": "python -m pytest",
"group": "test",
"presentation": {
"reveal": "always",
"panel": "new"
},
"problemMatcher": []
},
{
"label": "Run Pre-commit",
"type": "shell",
"command": "pre-commit run --all-files",
"group": "test",
"presentation": {
"reveal": "always",
"panel": "new"
},
"problemMatcher": []
}
]
}
================================================
FILE: CONTRIBUTING.md
================================================
# Contributing to GetDist
Thank you for your interest in contributing to GetDist! This guide will help you set up your development environment and understand our coding standards.
## Development Setup
### Prerequisites
- Python 3.10 or higher
- Git
- [uv](https://docs.astral.sh/uv/) (recommended) or pip for package management
### Installation for Development
1. **Clone the repository:**
```bash
git clone https://github.com/cmbant/getdist.git
cd getdist
```
2. **Install in development mode with development dependencies:**
Using uv (recommended):
```bash
uv pip install -e ".[dev]"
```
Using pip:
```bash
pip install -e ".[dev]"
```
This installs GetDist in editable mode along with development tools including:
- `pre-commit` for code quality checks
- `pytest` for testing
3. **Set up pre-commit hooks:**
```bash
pre-commit install
```
### Optional Dependencies
For specific development tasks, you may need additional dependencies:
- **GUI development:** `uv pip install -e ".[GUI]"` (adds PySide6)
- **Streamlit GUI:** `uv pip install -e ".[StreamlitGUI]"` (adds Streamlit)
- **Documentation:** `uv pip install -e ".[docs]"` (adds Sphinx and related tools)
- **All dependencies:** `uv pip install -e ".[dev,GUI,StreamlitGUI,docs]"`
## Code Standards
### Code Style
GetDist uses [Ruff](https://docs.astral.sh/ruff/) for code formatting and linting. The configuration is defined in `pyproject.toml`:
- **Line length:** 120 characters
- **Quote style:** Double quotes
- **Target Python version:** 3.10+
- **Import sorting:** Enabled (isort-compatible)
### Pre-commit Hooks
Pre-commit hooks automatically run code quality checks before each commit:
- **Ruff linting** with auto-fix enabled
- **Ruff formatting** for consistent code style
The hooks are configured in `.pre-commit-config.yaml` and will:
- Automatically fix common issues
- Block commits if unfixable issues are found
- Ensure consistent code formatting across the project
### Running Code Quality Checks
You can manually run the code quality checks at any time:
```bash
# Run on all files
pre-commit run --all-files
# Run on staged files only
pre-commit run
# Run specific hook
pre-commit run ruff-check
pre-commit run ruff-format
```
## Testing
### Running Tests
GetDist includes unit tests to ensure code quality and functionality:
```bash
# Run all tests
python -m pytest
# Run specific test file
python -m pytest getdist/tests/getdist_test.py
# Run the basic unit test (legacy method)
python -m unittest getdist.tests.getdist_test
```
### VS Code Integration
If you're using VS Code, the repository includes pre-configured launch configurations and tasks:
**Launch Configurations (F5 menu):**
- `Run GetDist Tests` - Run tests using unittest
- `Debug GetDist Tests` - Debug tests with breakpoints
- `Run GetDist Tests (pytest)` - Run tests using pytest
- `Debug GetDist Tests (pytest)` - Debug tests with pytest
**Tasks (Ctrl+Shift+P → "Tasks: Run Task"):**
- `Run GetDist Tests` - Quick test execution
- `Run GetDist Tests (pytest)` - Run with pytest
- `Run All Tests` - Run all tests in the project
- `Run Pre-commit` - Run code quality checks
**Keyboard Shortcuts:**
- `Ctrl+Shift+T` - Run GetDist Tests
- `Ctrl+Shift+F5` - Launch GetDist Tests
- `Ctrl+Shift+F6` - Debug GetDist Tests
- `Ctrl+Shift+P` - Run Pre-commit checks
### Writing Tests
When adding new features or fixing bugs:
1. Add appropriate tests in the `getdist/tests/` directory
2. Ensure tests pass locally before submitting
3. Aim for good test coverage of new code
## Development Workflow
### Making Changes
1. **Create a feature branch:**
```bash
git checkout -b feature/your-feature-name
```
2. **Make your changes** following the code standards above
3. **Test your changes:**
```bash
# Run tests
python -m pytest
# Run code quality checks
pre-commit run --all-files
```
4. **Commit your changes:**
```bash
git add .
git commit -m "Description of your changes"
```
The pre-commit hooks will run automatically and may modify files or block the commit if issues are found.
5. **Push and create a pull request:**
```bash
git push origin feature/your-feature-name
```
### Commit Messages
Use clear, descriptive commit messages:
- Start with a brief summary (50 characters or less)
- Use the imperative mood ("Add feature" not "Added feature")
- Include more details in the body if necessary
### Pull Request Guidelines
- Ensure all tests pass
- Include tests for new functionality
- Update documentation if needed
- Keep changes focused and atomic
- Respond to code review feedback promptly
## Architecture Overview
GetDist has several main components:
- **Command line/Python API:** Core functionality for sample analysis
- **Qt GUI:** Desktop application (`getdist/gui/mainwindow.py`) using PySide6
- **Streamlit GUI:** Web-based interface (`getdist/gui/streamlit_app.py`)
- **Plotting library:** Publication-ready plotting tools
- **Sample analysis:** MCMC chain analysis and statistics
## Getting Help
- Check the [documentation](https://getdist.readthedocs.io/)
- Look at existing [issues](https://github.com/cmbant/getdist/issues)
- Ask questions in new issues with the "question" label
================================================
FILE: LICENCE.txt
================================================
GetDist, Copyright (c) 2025, Antony Lewis
Code to find optimal bandwidths for basic kernel density estimators in 1 and 2D
was adapted from Matlab code by Zdravko Botev. Original code notice:
Copyright (c) 2007, Zdravko Botev
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the distribution
* Neither the name of the The University of Queensland nor the names
of its contributors may be used to endorse or promote products derived
from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
POSSIBILITY OF SUCH DAMAGE.
LICENSING
-------------------------------
You are licensed to use this software free of charge within the terms of the LGPL (see below), with
these additional conditions:
- Any physics publication using results of the code must be submitted
to arXiv.org at the same time as, or before, submitting to a
journal. arXiv must be updated with a version equivalent to
that accepted by the journal on journal acceptance.
- If you identify any bugs you report them as soon as confirmed
- This license, the above copyright notices and disclaimer appear
on ALL copies of the software and documentation, including
modifications that you make for internal use or for distribution
The documentation of this program is released under the GNU Free
Documentation License (see below)
For this code and its documentation (with the exceptions above):
----------------------------------------------------------------
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as
published by the Free Software Foundation, either version 3 of the
License, or any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
Lesser General Public License for more details.
The documentation of this program is released under the GNU Free
Documentation License. Permission is granted to copy, distribute
and/or modify this document under the terms of the GNU Free
Documentation License, Version 1.3 or any later version published
by the Free Software Foundation; with no Invariant Sections,
no Front-Cover Texts, and no Back-Cover Texts.
------------------------------------------------------------------------
GNU LESSER GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
This version of the GNU Lesser General Public License incorporates
the terms and conditions of version 3 of the GNU General Public
License, supplemented by the additional permissions listed below.
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6. Revised Versions of the GNU Lesser General Public License.
The Free Software Foundation may publish revised and/or new versions
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------------------------------------------------------------------------
GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
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TERMS AND CONDITIONS
0. Definitions.
"This License" refers to version 3 of the GNU General Public License.
"Copyright" also means copyright-like laws that apply to other kinds of
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1. Source Code.
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The Corresponding Source need not include anything that users
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The Corresponding Source for a work in source code form is that
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All rights granted under this License are granted for the term of
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"Additional permissions" are terms that supplement the terms of this
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Additional permissions that are applicable to the entire Program shall
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Moreover, your license from a particular copyright holder is
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Termination of your rights under this section does not terminate the
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9. Acceptance Not Required for Having Copies.
You are not required to accept this License in order to receive or
run a copy of the Program. Ancillary propagation of a covered work
occurring solely as a consequence of using peer-to-peer transmission
to receive a copy likewise does not require acceptance. However,
nothing other than this License grants you permission to propagate or
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not accept this License. Therefore, by modifying or propagating a
covered work, you indicate your acceptance of this License to do so.
10. Automatic Licensing of Downstream Recipients.
Each time you convey a covered work, the recipient automatically
receives a license from the original licensors, to run, modify and
propagate that work, subject to this License. You are not responsible
for enforcing compliance by third parties with this License.
An "entity transaction" is a transaction transferring control of an
organization, or substantially all assets of one, or subdividing an
organization, or merging organizations. If propagation of a covered
work results from an entity transaction, each party to that
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the predecessor has it or can get it with reasonable efforts.
You may not impose any further restrictions on the exercise of the
rights granted or affirmed under this License. For example, you may
not impose a license fee, royalty, or other charge for exercise of
rights granted under this License, and you may not initiate litigation
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11. Patents.
A "contributor" is a copyright holder who authorizes use under this
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work thus licensed is called the contributor's "contributor version".
A contributor's "essential patent claims" are all patent claims
owned or controlled by the contributor, whether already acquired or
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but do not include claims that would be infringed only as a
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In the following three paragraphs, a "patent license" is any express
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If you convey a covered work, knowingly relying on a patent license,
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then you must either (1) cause the Corresponding Source to be so
available, or (2) arrange to deprive yourself of the benefit of the
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consistent with the requirements of this License, to extend the patent
license to downstream recipients. "Knowingly relying" means you have
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covered work in a country, or your recipient's use of the covered work
in a country, would infringe one or more identifiable patents in that
country that you have reason to believe are valid.
If, pursuant to or in connection with a single transaction or
arrangement, you convey, or propagate by procuring conveyance of, a
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work and works based on it.
A patent license is "discriminatory" if it does not include within
the scope of its coverage, prohibits the exercise of, or is
conditioned on the non-exercise of one or more of the rights that are
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in the business of distributing software, under which you make payment
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parties who would receive the covered work from you, a discriminatory
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conveyed by you (or copies made from those copies), or (b) primarily
for and in connection with specific products or compilations that
contain the covered work, unless you entered into that arrangement,
or that patent license was granted, prior to 28 March 2007.
Nothing in this License shall be construed as excluding or limiting
any implied license or other defenses to infringement that may
otherwise be available to you under applicable patent law.
12. No Surrender of Others' Freedom.
If conditions are imposed on you (whether by court order, agreement or
otherwise) that contradict the conditions of this License, they do not
excuse you from the conditions of this License. If you cannot convey a
covered work so as to satisfy simultaneously your obligations under this
License and any other pertinent obligations, then as a consequence you may
not convey it at all. For example, if you agree to terms that obligate you
to collect a royalty for further conveying from those to whom you convey
the Program, the only way you could satisfy both those terms and this
License would be to refrain entirely from conveying the Program.
13. Use with the GNU Affero General Public License.
Notwithstanding any other provision of this License, you have
permission to link or combine any covered work with a work licensed
under version 3 of the GNU Affero General Public License into a single
combined work, and to convey the resulting work. The terms of this
License will continue to apply to the part which is the covered work,
but the special requirements of the GNU Affero General Public License,
section 13, concerning interaction through a network will apply to the
combination as such.
14. Revised Versions of this License.
The Free Software Foundation may publish revised and/or new versions of
the GNU General Public License from time to time. Such new versions will
be similar in spirit to the present version, but may differ in detail to
address new problems or concerns.
Each version is given a distinguishing version number. If the
Program specifies that a certain numbered version of the GNU General
Public License "or any later version" applies to it, you have the
option of following the terms and conditions either of that numbered
version or of any later version published by the Free Software
Foundation. If the Program does not specify a version number of the
GNU General Public License, you may choose any version ever published
by the Free Software Foundation.
If the Program specifies that a proxy can decide which future
versions of the GNU General Public License can be used, that proxy's
public statement of acceptance of a version permanently authorizes you
to choose that version for the Program.
Later license versions may give you additional or different
permissions. However, no additional obligations are imposed on any
author or copyright holder as a result of your choosing to follow a
later version.
15. Disclaimer of Warranty.
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
16. Limitation of Liability.
IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
SUCH DAMAGES.
17. Interpretation of Sections 15 and 16.
If the disclaimer of warranty and limitation of liability provided
above cannot be given local legal effect according to their terms,
reviewing courts shall apply local law that most closely approximates
an absolute waiver of all civil liability in connection with the
Program, unless a warranty or assumption of liability accompanies a
copy of the Program in return for a fee.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
state the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) <year> <name of author>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
<program> Copyright (C) <year> <name of author>
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================================================
FILE: MANIFEST.in
================================================
include README.rst
include *.py
include getdist/analysis_defaults.ini
include getdist/gui/images/*.png
include getdist/gui/images/*.icns
include getdist/styles/*.sty
include getdist/styles/*.paramnames
================================================
FILE: README.rst
================================================
===================
GetDist
===================
:GetDist: MCMC sample analysis, plotting and GUI
:Author: Antony Lewis
:Homepage: https://getdist.readthedocs.io
:Source: https://github.com/cmbant/getdist
:Reference: https://arxiv.org/abs/1910.13970
.. image:: https://github.com/cmbant/getdist/actions/workflows/tests.yml/badge.svg
:target: https://github.com/cmbant/getdist/actions/workflows/tests.yml
.. image:: https://img.shields.io/pypi/v/GetDist.svg?style=flat
:target: https://pypi.python.org/pypi/GetDist/
.. image:: https://readthedocs.org/projects/getdist/badge/?version=latest
:target: https://getdist.readthedocs.io/en/latest
.. image:: https://mybinder.org/badge_logo.svg
:target: https://mybinder.org/v2/gh/cmbant/getdist/master?filepath=docs%2Fplot_gallery.ipynb
.. image:: https://img.shields.io/badge/arXiv-1910.13970-b31b1b.svg?color=0B6523
:target: https://arxiv.org/abs/1910.13970
Description
============
GetDist is a Python package for analysing Monte Carlo samples, including correlated samples
from Markov Chain Monte Carlo (MCMC).
* **Point and click GUI** - select chain files, view plots, marginalized constraints, LaTeX tables and more (Qt-based desktop app and Streamlit web interface)
* **Plotting library** - make custom publication-ready 1D, 2D, 3D-scatter, triangle and other plots
* **Named parameters** - simple handling of many parameters using parameter names, including LaTeX labels and prior bounds
* **Optimized Kernel Density Estimation** - automated optimal bandwidth choice for 1D and 2D densities (Botev et al. Improved Sheather-Jones method), with boundary and bias correction
* **Convergence diagnostics** - including correlation length and diagonalized Gelman-Rubin statistics
* **LaTeX tables** for marginalized 1D constraints
See the `Plot Gallery and tutorial <https://getdist.readthedocs.io/en/latest/plot_gallery.html>`_
(`run online <https://mybinder.org/v2/gh/cmbant/getdist/master?filepath=docs%2Fplot_gallery.ipynb>`_)
and `GetDist Documentation <https://getdist.readthedocs.io/en/latest/index.html>`_.
Getting Started
================
Install getdist using pip::
$ pip install getdist
or from source files using::
$ pip install -e /path/to/source/
You can test if things are working using the unit test by running::
$ python -m unittest getdist.tests.getdist_test
Check the dependencies listed in the next section are installed. You can then use the getdist module from your scripts, or
use the GetDist GUI (*getdist-gui* command).
Once installed, the best way to get up to speed is probably to read through
the `Plot Gallery and tutorial <https://getdist.readthedocs.io/en/latest/plot_gallery.html>`_.
Dependencies
=============
* Python 3.10+
* matplotlib
* scipy
* PySide6 - optional, only needed for Qt-based GUI
* Streamlit - optional, only needed for web-based GUI
* Working LaTeX installation (not essential, only for some plotting/table functions)
Python distributions like Anaconda have most of what you need (except for LaTeX).
To use the Qt-based `GUI <https://getdist.readthedocs.io/en/latest/gui.html>`_ you need PySide6.
To use the Streamlit web interface, you need Streamlit.
See the `GUI docs <https://getdist.readthedocs.io/en/latest/gui.html#installation>`_ for suggestions on how to install both.
Algorithm details
==================
Details of kernel density estimation (KDE) algorithms and references are give in the GetDist notes
`arXiv:1910.13970 <https://arxiv.org/pdf/1910.13970>`_.
Samples file format
===================
GetDist can be used in scripts and interactively with standard numpy arrays
(as in the `examples <https://getdist.readthedocs.io/en/latest/plot_gallery.html>`_).
Scripts and the `GetDist GUI <https://getdist.readthedocs.io/en/latest/gui.html>`_ can also read parameter sample/chain files in plain text format
(or in the format output by the `Cobaya <https://cobaya.readthedocs.io>`__ sampling program.
Plain text sample files are of the form::
xxx_1.txt
xxx_2.txt
...
xxx.paramnames
xxx.ranges
where "xxx" is some root file name.
The .txt files are separate chain files (there can also be just one xxx.txt file). Each row of each sample .txt file is in the format
*weight like param1 param2 param3* ...
The *weight* gives the number of samples (or importance weight) with these parameters. *like* gives -log(posterior), and *param1, param2...* are the values of the parameters at the sample point. The first two columns can be 1 and 0 if they are not known or used.
The .paramnames file lists the names of the parameters, one per line, optionally followed by a LaTeX label. Names cannot include spaces, and if they end in "*" they are interpreted as derived (rather than MCMC) parameters, e.g.::
x1 x_1
y1 y_1
x2 x_2
xy* x_1+y_1
The .ranges file gives hard bounds for the parameters, e.g.::
x1 -5 5
x2 0 N
Note that not all parameters need to be specified, and "N" can be used to denote that a particular upper or lower limit is unbounded. The ranges are used to determine densities and plot bounds if there are samples near the boundary; if there are no samples anywhere near the boundary the ranges have no affect on plot bounds, which are chosen appropriately for the range of the samples.
There can also optionally be a .properties.ini file, which can specify *burn_removed=T* to ensure no burn in is removed, or *ignore_rows=x* to ignore the first
fraction *x* of the file rows (or if *x > 1*, the specified number of rows).
Loading samples
===================
To load an MCSamples object from text files do::
from getdist import loadMCSamples
samples = loadMCSamples('/path/to/xxx', settings={'ignore_rows':0.3})
Here *settings* gives optional parameter settings for the analysis. *ignore_rows* is useful for MCMC chains where you want to
discard some fraction from the start of each chain as burn in (use a number >1 to discard a fixed number of sample lines rather than a fraction).
The MCSamples object can be passed to plot functions, or used to get many results. For example, to plot marginalized parameter densities
for parameter names *x1* and *x2*::
from getdist import plots
g = plots.get_single_plotter()
g.plot_2d(samples, ['x1', 'x2'])
When you have many different chain files in the same directory,
plotting can work directly with the root file names. For example to compare *x* and *y* constraints
from two chains with root names *xxx* and *yyy*::
from getdist import plots
g = plots.get_single_plotter(chain_dir='/path/to/', analysis_settings={'ignore_rows':0.3})
g.plot_2d(['xxx','yyy'], ['x', 'y'])
MCSamples objects can also be constructed directly from numpy arrays in memory, see the example
in the `Plot Gallery <https://getdist.readthedocs.io/en/latest/plot_gallery.html>`_,
and from, `ArviZ, PyMC and other sampler formats <https://getdist.readthedocs.io/en/latest/arviz_integration.html>`_.
GetDist script
===================
If you have chain files on on disk, you can also quickly calculate convergence and marginalized statistics using the *getdist* script:
usage: getdist [-h] [--ignore_rows IGNORE_ROWS] [-V] [ini_file] [chain_root]
GetDist sample analyser
positional arguments:
*ini_file* .ini file with analysis settings (optional, if omitted uses defaults
*chain_root* Root name of chain to analyse (e.g. chains/test), required unless file_root specified in ini_file
optional arguments:
-h, --help show this help message and exit
--ignore_rows IGNORE_ROWS
set initial fraction of chains to cut as burn in
(fraction of total rows, or >1 number of rows);
overrides any value in ini_file if set
--make_param_file MAKE_PARAM_FILE
Produce a sample distparams.ini file that you can edit
and use when running GetDist
-V, --version show program's version number and exit
where *ini_file* is optionally a .ini file listing *key=value* parameter option values, and chain_root is the root file name of the chains.
For example::
getdist distparams.ini chains/test_chain
This produces a set of files containing parameter means and limits (.margestats), N-D likelihood contour boundaries and best-fit sample (.likestats),
convergence diagnostics (.converge), parameter covariance and correlation (.covmat and .corr), and optionally various simple plotting scripts.
If no *ini_file* is given, default settings are used. The *ignore_rows* option allows some of the start of each chain file to be removed as burn in.
To customize settings you can run::
getdist --make_param_file distparams.ini
to produce the setting file distparams.ini, edit it, then run with your custom settings.
GetDist GUI
===================
GetDist provides two graphical user interfaces:
1. **Qt-based Desktop App**: Run *getdist-gui* to use the traditional desktop interface. This requires PySide6 to be installed.
2. **Streamlit Web Interface**: Run *getdist-streamlit* to use the browser-based interface. This requires Streamlit to be installed.
Both interfaces allow you to open a folder of chain files, then easily select, open, plot and compare, as well as viewing standard GetDist outputs and tables.
You can also try the Streamlit interface online at `<https://getdist-gui-test.streamlit.app/>`_ (with fixed example chains).
See the `GUI Documentation <https://getdist.readthedocs.io/en/latest/gui.html>`_ for more details on both interfaces.
Using with CosmoMC and Cobaya
=============================
This GetDist package is general, but is mainly developed for analysing chains from the `CosmoMC <https://cosmologist.info/cosmomc>`_
and `Cobaya <https://cobaya.readthedocs.io/>`_ sampling programs.
No need to install this package separately if you have a full CosmoMC installation; the Cobaya installation will also install GetDist as a dependency.
Detailed help is available for plotting Planck chains
and using CosmoMC parameter grids in the `Readme <https://cosmologist.info/cosmomc/readme_python.html>`_.
Citation
===================
You can refer to the JCAP paper::
@article{Lewis:2019xzd,
author = "Lewis, Antony",
title = "{GetDist: a Python package for analysing Monte Carlo samples}",
eprint = "1910.13970",
archivePrefix = "arXiv",
primaryClass = "astro-ph.IM",
doi = "10.1088/1475-7516/2025/08/025",
journal = "JCAP",
volume = "08",
pages = "025",
year = "2025"
}
and references therein as appropriate.
LLM Integration
===================
For AI assistants and LLM agents working with GetDist, a single-file context document is available at `GetDist LLM Context <https://help.cosmologist.info/api/context/getdist>`_. This document provides a comprehensive overview of GetDist's functionality, common usage patterns, and best practices in a format optimized for LLM context windows.
Contributing
===================
Please see the `Contributing Guide <https://github.com/cmbant/getdist/blob/master/CONTRIBUTING.md>`_.
===================
.. image:: https://raw.githubusercontent.com/CobayaSampler/cobaya/master/img/Sussex_white.svg
:alt: University of Sussex
:target: https://www.sussex.ac.uk/astronomy/
:height: 200px
:width: 200px
.. image:: https://raw.githubusercontent.com/CobayaSampler/cobaya/master/img/ERC_white.svg
:alt: European Research Council
:target: https://erc.europa.eu/
:height: 200px
:width: 200px
.. image:: https://cdn.cosmologist.info/antony/STFC_white.svg
:alt: STFC
:target: https://stfc.ukri.org/
:height: 200px
:width: 200px
================================================
FILE: codemeta.json
================================================
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"name": "GetDist: Monte Carlo sample analysis, plotting and GUI",
"description": "Analysis and plotting of Monte Carlo (and other) samples, including correlated samples from Markov Chain Monte Carlo (MCMC). It offers a point and click GUI for selecting chain files, viewing plots, marginalized constraints, and LaTeX tables, and includes a plotting library for making custom publication-ready 1D, 2D, 3D-scatter, triangle and other plots. Its convergence diagnostics include correlation length and diagonalized Gelman-Rubin statistics, and the optimized kernel density estimation provides an automated optimal bandwidth choice for 1D and 2D densities with boundary and bias correction.",
"identifier": "https://dx.doi.org/10.5281/zenodo.3522420",
"author": [
{
"@type": "Person",
"givenName": "Antony",
"familyName": "Lewis",
"id": "https://orcid.org/0000-0001-5927-6667"
}
],
"citation": "https://arxiv.org/abs/1910.13970",
"relatedLink": [
"https://getdist.readthedocs.io/"
],
"codeRepository": "https://github.com/cmbant/getdist",
"programmingLanguage": "Python",
"referencePublication": [
{
"@type": "ScholarlyArticle",
"url": "https://arxiv.org/abs/1910.13970",
"id": "arXiv:1910.13970"
}
],
"version": "1",
"license": "https://github.com/cmbant/getdist/blob/master/LICENCE.txt"
}
================================================
FILE: docs/index.html
================================================
<html>
<head>
<title>GetDist online docs</title>
<META http-equiv="refresh" content="0;URL=https://getdist.readthedocs.io/en/latest/index.html">
</head>
<body bgcolor="#ffffff">
<center>See the documentation <a href="https://getdist.readthedocs.io/en/latest/index.html">online</a>.
</center>
</body>
</html>
================================================
FILE: docs/markdown_builder.py
================================================
#!/usr/bin/env python
"""
This script builds Sphinx documentation in Markdown format and combines it into a single file
for use as context with Large Language Models (LLMs).
It can be used:
1. As a pre-build step in ReadTheDocs
2. Locally to generate markdown documentation
3. In CI/CD pipelines
Usage:
python markdown_builder.py [--exclude file1,file2,...] [--output output_file] [--no-install]
Options:
--exclude: Comma-separated list of files to exclude (without .md extension)
--output: Output file path
"""
import argparse
import glob
import os
import shutil
import subprocess
import sys
import traceback
def parse_args():
"""Parse command line arguments."""
parser = argparse.ArgumentParser(description="Build Sphinx documentation in Markdown format for LLM context.")
parser.add_argument(
"--exclude",
type=str,
default="",
help="Comma-separated list of files to exclude (without .md extension)",
)
parser.add_argument(
"--output",
type=str,
help="Output file path",
)
return parser.parse_args()
def build_markdown_docs():
"""Build the documentation in Markdown format."""
print("Building documentation in Markdown format...")
build_dir = "docs/_build/markdown"
# Create build directory if it doesn't exist
os.makedirs(build_dir, exist_ok=True)
# Create a temporary conf.py with intersphinx_disabled_reftypes setting
temp_conf_dir = os.path.join(os.path.dirname(build_dir), "temp_conf")
os.makedirs(temp_conf_dir, exist_ok=True)
temp_conf_path = os.path.join(temp_conf_dir, "conf.py")
with open("docs/source/conf.py", encoding="utf-8") as f:
conf_content = f.read()
# Disable intersphinx extension for markdown build
conf_content = conf_content.replace(
"'sphinx.ext.autodoc', 'sphinx.ext.intersphinx', 'sphinx.ext.viewcode', 'sphinx.ext.autosummary',",
"'sphinx.ext.autodoc', 'sphinx.ext.viewcode', 'sphinx.ext.autosummary',",
)
with open(temp_conf_path, "w", encoding="utf-8") as f:
f.write(conf_content)
try:
# Run sphinx-build with the temporary conf.py
result = subprocess.run(
[
"sphinx-build",
"-b",
"markdown",
"-c",
temp_conf_dir,
"docs/source",
build_dir,
],
check=False,
capture_output=True,
text=True,
)
if result.returncode != 0:
print(f"Warning: sphinx-build returned non-zero exit code: {result.returncode}")
print(f"stdout: {result.stdout}")
print(f"stderr: {result.stderr}")
# Continue anyway as we might still have generated some markdown files
finally:
# Clean up the temporary conf directory
if os.path.exists(temp_conf_dir):
shutil.rmtree(temp_conf_dir)
return build_dir
def extract_toctree_order(index_rst_path="docs/source/index.rst"):
"""Extract the order of files from the index.rst toctree."""
try:
with open(index_rst_path, encoding="utf-8") as f:
content = f.read()
# Find all toctree sections
toctree_sections = []
current_section = []
in_toctree = False
for line in content.split("\n"):
line = line.strip()
if ".. toctree::" in line:
in_toctree = True
current_section = []
elif in_toctree:
if line and not line.startswith(":"):
# This is a document reference in the toctree
current_section.append(line)
elif not line and current_section:
# Empty line after entries - end of this toctree
toctree_sections.append(current_section)
in_toctree = False
# Add the last section if we're still in a toctree at the end
if in_toctree and current_section:
toctree_sections.append(current_section)
# Flatten the list of sections
ordered_files = []
for section in toctree_sections:
ordered_files.extend(section)
return ordered_files
except Exception as e:
print(f"Warning: Could not extract toctree order from index.rst: {e}")
return []
def combine_markdown_files(build_dir, exclude_files, output_file):
"""Combine Markdown files into a single file with improved structure."""
print(f"Combining Markdown files into {output_file}...")
# Get all markdown files
md_files = sorted(glob.glob(os.path.join(build_dir, "*.md")))
if not md_files:
print(f"Error: No markdown files found in {build_dir}")
return False
# Convert exclude_files to a set for faster lookup
exclude_set = {f"{name.strip()}.md" for name in exclude_files if name.strip()}
# Print excluded files for debugging
if exclude_set:
print(f"Excluding the following files: {', '.join(exclude_set)}")
# Filter out excluded files
filtered_files = [f for f in md_files if os.path.basename(f) not in exclude_set]
# Check if any files were actually excluded
excluded_count = len(md_files) - len(filtered_files)
if excluded_count > 0:
print(f"Successfully excluded {excluded_count} file(s)")
else:
print("Note: No files were excluded.")
# Ensure index.md comes first if it exists
index_file = None
other_files = []
for file_path in filtered_files:
if os.path.basename(file_path).lower() == "index.md":
index_file = file_path
else:
other_files.append(file_path)
# Get the order from index.rst
ordered_docs = extract_toctree_order()
# Create a mapping of filenames to their paths
filename_to_path = {os.path.splitext(os.path.basename(f))[0]: f for f in other_files}
# Sort other_files based on the order in index.rst
sorted_other_files = []
# First add files in the order they appear in index.rst
ordered_count = 0
for doc in ordered_docs:
if doc in filename_to_path:
sorted_other_files.append(filename_to_path[doc])
# Remove from the dictionary to mark as processed
del filename_to_path[doc]
ordered_count += 1
# Then add any remaining files that weren't in the toctree
remaining_files = list(filename_to_path.values())
remaining_files.sort() # Sort alphabetically
sorted_other_files.extend(remaining_files)
if ordered_count > 0:
print(f"Sorted {ordered_count} files according to their order in index.rst")
if remaining_files:
print(f"Added {len(remaining_files)} additional files not found in index.rst (sorted alphabetically)")
# Reorder files with index first, then the rest in the determined order
if index_file:
filtered_files = [index_file] + sorted_other_files
print("Placing index.md first in the combined document")
else:
filtered_files = sorted_other_files
# Create the output directory if it doesn't exist
os.makedirs(os.path.dirname(output_file), exist_ok=True)
# Combine files with improved structure
with open(output_file, "w", encoding="utf-8") as outfile:
# Add a comprehensive header
outfile.write("# GetDist Documentation\n\n")
outfile.write("---\n\n")
# Add each file's content
for file_path in filtered_files:
file_name = os.path.basename(file_path)
section_name = os.path.splitext(file_name)[0]
link_name = "https://getdist.readthedocs.io/en/latest/" + section_name + ".html"
print(f" Adding {section_name}...")
outfile.write(f"## {link_name}\n\n")
# Add file content
with open(file_path, encoding="utf-8") as infile:
content = infile.read()
outfile.write(content)
outfile.write("\n\n")
return True
def convert_plot_gallery_to_markdown():
"""Convert plot_gallery.ipynb to markdown using jupytext."""
print("Converting plot_gallery.ipynb to markdown...")
# Path to the notebook
notebook_path = os.path.join(os.path.dirname(os.path.abspath(__file__)), "plot_gallery.ipynb")
if not os.path.exists(notebook_path):
print(f"Error: plot_gallery.ipynb not found at {notebook_path}")
return None
# Run jupytext to convert the notebook to markdown
result = subprocess.run(
["jupytext", "--to", "md", "--opt", "notebook_metadata_filter=-all", notebook_path],
check=False,
capture_output=True,
text=True,
)
if result.returncode != 0:
print(f"Error converting plot_gallery.ipynb to markdown: {result.stderr}")
return None
# Path to the generated markdown file
md_path = os.path.splitext(notebook_path)[0] + ".md"
if not os.path.exists(md_path):
print(f"Error: Generated markdown file not found at {md_path}")
return None
print(f"Successfully converted plot_gallery.ipynb to markdown: {md_path}")
return md_path
def main():
args = parse_args()
try:
# Get the list of files to exclude
exclude_files = args.exclude.split(",") if args.exclude else []
# Build the documentation
build_dir = build_markdown_docs()
# Combine the files
if not combine_markdown_files(build_dir, exclude_files, args.output):
print("Failed to combine markdown files. Exiting.")
return 1
# Verify the file exists and has content
if not os.path.exists(args.output):
print(f"ERROR: Failed to generate markdown file at {args.output}")
return 1
file_size = os.path.getsize(args.output)
print(f"Initial markdown file size: {file_size / 1024:.2f} KB")
if file_size == 0:
print("ERROR: Generated markdown file is empty")
return 1
# Convert plot_gallery.ipynb to markdown and append it to the combined file
plot_gallery_md = convert_plot_gallery_to_markdown()
if plot_gallery_md:
print(f"Appending plot_gallery.md to {args.output}...")
with open(args.output, "a", encoding="utf-8") as outfile:
outfile.write("## Usage examples from plot_gallery jupyter notebook \n\n")
with open(plot_gallery_md, encoding="utf-8") as infile:
content = infile.read()
outfile.write(content)
# Update file size
file_size = os.path.getsize(args.output)
print(f"Final markdown file size: {file_size / 1024:.2f} KB")
print(f"\nSuccess! Documentation has been built and combined into: {args.output}")
return 0
except Exception as e:
print(f"ERROR: An exception occurred during the build process: {e}")
traceback.print_exc()
return 1
if __name__ == "__main__":
sys.exit(main())
================================================
FILE: docs/plot_gallery.html
================================================
<!DOCTYPE html>
<html lang="en">
<head><meta charset="utf-8"/>
<meta content="width=device-width, initial-scale=1.0" name="viewport"/>
<title>plot_gallery</title><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
<style type="text/css">
pre { line-height: 125%; }
td.linenos .normal { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
span.linenos { color: inherit; background-color: transparent; padding-left: 5px; padding-right: 5px; }
td.linenos .special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
span.linenos.special { color: #000000; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
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</style>
<style type="text/css">
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Distributed under the terms of the Modified BSD License.
|----------------------------------------------------------------------------*/
/*
* Mozilla scrollbar styling
*/
/* use standard opaque scrollbars for most nodes */
[data-jp-theme-scrollbars='true'] {
scrollbar-color: rgb(var(--jp-scrollbar-thumb-color))
var(--jp-scrollbar-background-color);
}
/* for code nodes, use a transparent style of scrollbar. These selectors
* will match lower in the tree, and so will override the above */
[data-jp-theme-scrollbars='true'] .CodeMirror-hscrollbar,
[data-jp-theme-scrollbars='true'] .CodeMirror-vscrollbar {
scrollbar-color: rgba(var(--jp-scrollbar-thumb-color), 0.5) transparent;
}
/* tiny scrollbar */
.jp-scrollbar-tiny {
scrollbar-color: rgba(var(--jp-scrollbar-thumb-color), 0.5) transparent;
scrollbar-width: thin;
}
/* tiny scrollbar */
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background-color: transparent;
height: 4px;
width: 4px;
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.jp-scrollbar-tiny::-webkit-scrollbar-thumb {
background: rgba(var(--jp-scrollbar-thumb-color), 0.5);
}
.jp-scrollbar-tiny::-webkit-scrollbar-track:horizontal {
border-left: 0 solid transparent;
border-right: 0 solid transparent;
}
.jp-scrollbar-tiny::-webkit-scrollbar-track:vertical {
border-top: 0 solid transparent;
border-bottom: 0 solid transparent;
}
/*
* Lumino
*/
.lm-ScrollBar[data-orientation='horizontal'] {
min-height: 16px;
max-height: 16px;
min-width: 45px;
border-top: 1px solid #a0a0a0;
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.lm-ScrollBar[data-orientation='vertical'] {
min-width: 16px;
max-width: 16px;
min-height: 45px;
border-left: 1px solid #a0a0a0;
}
.lm-ScrollBar-button {
background-color: #f0f0f0;
background-position: center center;
min-height: 15px;
max-height: 15px;
min-width: 15px;
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.lm-ScrollBar-button:hover {
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.lm-ScrollBar-button.lm-mod-active {
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background: #f0f0f0;
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background: #cdcdcd;
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background: #bababa;
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background: #a0a0a0;
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height: 100%;
min-width: 15px;
border-left: 1px solid #a0a0a0;
border-right: 1px solid #a0a0a0;
}
.lm-ScrollBar[data-orientation='vertical'] .lm-ScrollBar-thumb {
width: 100%;
min-height: 15px;
border-top: 1px solid #a0a0a0;
border-bottom: 1px solid #a0a0a0;
}
.lm-ScrollBar[data-orientation='horizontal']
.lm-ScrollBar-button[data-action='decrement'] {
background-image: var(--jp-icon-caret-left);
background-size: 17px;
}
.lm-ScrollBar[data-orientation='horizontal']
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background-image: var(--jp-icon-caret-right);
background-size: 17px;
}
.lm-ScrollBar[data-orientation='vertical']
.lm-ScrollBar-button[data-action='decrement'] {
background-image: var(--jp-icon-caret-up);
background-size: 17px;
}
.lm-ScrollBar[data-orientation='vertical']
.lm-ScrollBar-button[data-action='increment'] {
background-image: var(--jp-icon-caret-down);
background-size: 17px;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-Widget {
box-sizing: border-box;
position: relative;
overflow: hidden;
}
.lm-Widget.lm-mod-hidden {
display: none !important;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
.lm-AccordionPanel[data-orientation='horizontal'] > .lm-AccordionPanel-title {
/* Title is rotated for horizontal accordion panel using CSS */
display: block;
transform-origin: top left;
transform: rotate(-90deg) translate(-100%);
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-CommandPalette {
display: flex;
flex-direction: column;
-webkit-user-select: none;
-moz-user-select: none;
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user-select: none;
}
.lm-CommandPalette-search {
flex: 0 0 auto;
}
.lm-CommandPalette-content {
flex: 1 1 auto;
margin: 0;
padding: 0;
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}
.lm-CommandPalette-header {
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white-space: nowrap;
text-overflow: ellipsis;
}
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display: flex;
flex-direction: row;
}
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}
.lm-CommandPalette-itemContent {
flex: 1 1 auto;
overflow: hidden;
}
.lm-CommandPalette-itemShortcut {
flex: 0 0 auto;
}
.lm-CommandPalette-itemLabel {
overflow: hidden;
white-space: nowrap;
text-overflow: ellipsis;
}
.lm-close-icon {
border: 1px solid transparent;
background-color: transparent;
position: absolute;
z-index: 1;
right: 3%;
top: 0;
bottom: 0;
margin: auto;
padding: 7px 0;
display: none;
vertical-align: middle;
outline: 0;
cursor: pointer;
}
.lm-close-icon:after {
content: 'X';
display: block;
width: 15px;
height: 15px;
text-align: center;
color: #000;
font-weight: normal;
font-size: 12px;
cursor: pointer;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-DockPanel {
z-index: 0;
}
.lm-DockPanel-widget {
z-index: 0;
}
.lm-DockPanel-tabBar {
z-index: 1;
}
.lm-DockPanel-handle {
z-index: 2;
}
.lm-DockPanel-handle.lm-mod-hidden {
display: none !important;
}
.lm-DockPanel-handle:after {
position: absolute;
top: 0;
left: 0;
width: 100%;
height: 100%;
content: '';
}
.lm-DockPanel-handle[data-orientation='horizontal'] {
cursor: ew-resize;
}
.lm-DockPanel-handle[data-orientation='vertical'] {
cursor: ns-resize;
}
.lm-DockPanel-handle[data-orientation='horizontal']:after {
left: 50%;
min-width: 8px;
transform: translateX(-50%);
}
.lm-DockPanel-handle[data-orientation='vertical']:after {
top: 50%;
min-height: 8px;
transform: translateY(-50%);
}
.lm-DockPanel-overlay {
z-index: 3;
box-sizing: border-box;
pointer-events: none;
}
.lm-DockPanel-overlay.lm-mod-hidden {
display: none !important;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-Menu {
z-index: 10000;
position: absolute;
white-space: nowrap;
overflow-x: hidden;
overflow-y: auto;
outline: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
.lm-Menu-content {
margin: 0;
padding: 0;
display: table;
list-style-type: none;
}
.lm-Menu-item {
display: table-row;
}
.lm-Menu-item.lm-mod-hidden,
.lm-Menu-item.lm-mod-collapsed {
display: none !important;
}
.lm-Menu-itemIcon,
.lm-Menu-itemSubmenuIcon {
display: table-cell;
text-align: center;
}
.lm-Menu-itemLabel {
display: table-cell;
text-align: left;
}
.lm-Menu-itemShortcut {
display: table-cell;
text-align: right;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-MenuBar {
outline: none;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
.lm-MenuBar-content {
margin: 0;
padding: 0;
display: flex;
flex-direction: row;
list-style-type: none;
}
.lm-MenuBar-item {
box-sizing: border-box;
}
.lm-MenuBar-itemIcon,
.lm-MenuBar-itemLabel {
display: inline-block;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-ScrollBar {
display: flex;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
.lm-ScrollBar[data-orientation='horizontal'] {
flex-direction: row;
}
.lm-ScrollBar[data-orientation='vertical'] {
flex-direction: column;
}
.lm-ScrollBar-button {
box-sizing: border-box;
flex: 0 0 auto;
}
.lm-ScrollBar-track {
box-sizing: border-box;
position: relative;
overflow: hidden;
flex: 1 1 auto;
}
.lm-ScrollBar-thumb {
box-sizing: border-box;
position: absolute;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-SplitPanel-child {
z-index: 0;
}
.lm-SplitPanel-handle {
z-index: 1;
}
.lm-SplitPanel-handle.lm-mod-hidden {
display: none !important;
}
.lm-SplitPanel-handle:after {
position: absolute;
top: 0;
left: 0;
width: 100%;
height: 100%;
content: '';
}
.lm-SplitPanel[data-orientation='horizontal'] > .lm-SplitPanel-handle {
cursor: ew-resize;
}
.lm-SplitPanel[data-orientation='vertical'] > .lm-SplitPanel-handle {
cursor: ns-resize;
}
.lm-SplitPanel[data-orientation='horizontal'] > .lm-SplitPanel-handle:after {
left: 50%;
min-width: 8px;
transform: translateX(-50%);
}
.lm-SplitPanel[data-orientation='vertical'] > .lm-SplitPanel-handle:after {
top: 50%;
min-height: 8px;
transform: translateY(-50%);
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-TabBar {
display: flex;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}
.lm-TabBar[data-orientation='horizontal'] {
flex-direction: row;
align-items: flex-end;
}
.lm-TabBar[data-orientation='vertical'] {
flex-direction: column;
align-items: flex-end;
}
.lm-TabBar-content {
margin: 0;
padding: 0;
display: flex;
flex: 1 1 auto;
list-style-type: none;
}
.lm-TabBar[data-orientation='horizontal'] > .lm-TabBar-content {
flex-direction: row;
}
.lm-TabBar[data-orientation='vertical'] > .lm-TabBar-content {
flex-direction: column;
}
.lm-TabBar-tab {
display: flex;
flex-direction: row;
box-sizing: border-box;
overflow: hidden;
touch-action: none; /* Disable native Drag/Drop */
}
.lm-TabBar-tabIcon,
.lm-TabBar-tabCloseIcon {
flex: 0 0 auto;
}
.lm-TabBar-tabLabel {
flex: 1 1 auto;
overflow: hidden;
white-space: nowrap;
}
.lm-TabBar-tabInput {
user-select: all;
width: 100%;
box-sizing: border-box;
}
.lm-TabBar-tab.lm-mod-hidden {
display: none !important;
}
.lm-TabBar-addButton.lm-mod-hidden {
display: none !important;
}
.lm-TabBar.lm-mod-dragging .lm-TabBar-tab {
position: relative;
}
.lm-TabBar.lm-mod-dragging[data-orientation='horizontal'] .lm-TabBar-tab {
left: 0;
transition: left 150ms ease;
}
.lm-TabBar.lm-mod-dragging[data-orientation='vertical'] .lm-TabBar-tab {
top: 0;
transition: top 150ms ease;
}
.lm-TabBar.lm-mod-dragging .lm-TabBar-tab.lm-mod-dragging {
transition: none;
}
.lm-TabBar-tabLabel .lm-TabBar-tabInput {
user-select: all;
width: 100%;
box-sizing: border-box;
background: inherit;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
.lm-TabPanel-tabBar {
z-index: 1;
}
.lm-TabPanel-stackedPanel {
z-index: 0;
}
/*
* Copyright (c) Jupyter Development Team.
* Distributed under the terms of the Modified BSD License.
*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Copyright (c) 2014-2017, PhosphorJS Contributors
|
| Distributed under the terms of the BSD 3-Clause License.
|
| The full license is in the file LICENSE, distributed with this software.
|----------------------------------------------------------------------------*/
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Distributed under the terms of the Modified BSD License.
|----------------------------------------------------------------------------*/
.jp-Collapse {
display: flex;
flex-direction: column;
align-items: stretch;
}
.jp-Collapse-header {
padding: 1px 12px;
background-color: var(--jp-layout-color1);
border-bottom: solid var(--jp-border-width) var(--jp-border-color2);
color: var(--jp-ui-font-color1);
cursor: pointer;
display: flex;
align-items: center;
font-size: var(--jp-ui-font-size0);
font-weight: 600;
text-transform: uppercase;
user-select: none;
}
.jp-Collapser-icon {
height: 16px;
}
.jp-Collapse-header-collapsed .jp-Collapser-icon {
transform: rotate(-90deg);
margin: auto 0;
}
.jp-Collapser-title {
line-height: 25px;
}
.jp-Collapse-contents {
padding: 0 12px;
background-color: var(--jp-layout-color1);
color: var(--jp-ui-font-color1);
overflow: auto;
}
/*-----------------------------------------------------------------------------
| Copyright (c) Jupyter Development Team.
| Distributed under the terms of the Modified BSD License.
|----------------------------------------------------------------------------*/
/* This file was auto-generated by ensureUiComponents() in @jupyterlab/buildutils */
/**
* (DEPRECATED) Support for consuming icons as CSS background images
*/
/* Icons urls */
:root {
--jp-icon-add-above: url(data:image/svg+xml;base64,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);
--jp-icon-add-below: url(data:image/svg+xml;base64,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);
--jp-icon-add: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDI0IDI0Ij4KICA8ZyBjbGFzcz0ianAtaWNvbjMiIGZpbGw9IiM2MTYxNjEiPgogICAgPHBhdGggZD0iTTE5IDEzaC02djZoLTJ2LTZINXYtMmg2VjVoMnY2aDZ2MnoiLz4KICA8L2c+Cjwvc3ZnPgo=);
--jp-icon-bell: url(data:image/svg+xml;base64,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);
--jp-icon-bug-dot: url(data:image/svg+xml;base64,PHN2ZyB3aWR0aD0iMjQiIGhlaWdodD0iMjQiIHZpZXdCb3g9IjAgMCAyNCAyNCIgZmlsbD0ibm9uZSIgeG1sbnM9Imh0dHA6Ly93d3cudzMub3JnLzIwMDAvc3ZnIj4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyBqcC1pY29uLXNlbGVjdGFibGUiIGZpbGw9IiM2MTYxNjEiPgogICAgICAgIDxwYXRoIGZpbGwtcnVsZT0iZXZlbm9kZCIgY2xpcC1ydWxlPSJldmVub2RkIiBkPSJNMTcuMTkgOEgyMFYxMEgxNy45MUMxNy45NiAxMC4zMyAxOCAxMC42NiAxOCAxMVYxMkgyMFYxNEgxOC41SDE4VjE0LjAyNzVDMTUuNzUgMTQuMjc2MiAxNCAxNi4xODM3IDE0IDE4LjVDMTQgMTkuMjA4IDE0LjE2MzUgMTkuODc3OSAxNC40NTQ5IDIwLjQ3MzlDMTMuNzA2MyAyMC44MTE3IDEyLjg3NTcgMjEgMTIgMjFDOS43OCAyMSA3Ljg1IDE5Ljc5IDYuODEgMThINFYxNkg2LjA5QzYuMDQgMTUuNjcgNiAxNS4zNCA2IDE1VjE0SDRWMTJINlYxMUM2IDEwLjY2IDYuMDQgMTAuMzMgNi4wOSAxMEg0VjhINi44MUM3LjI2IDcuMjIgNy44OCA2LjU1IDguNjIgNi4wNEw3IDQuNDFMOC40MSAzTDEwLjU5IDUuMTdDMTEuMDQgNS4wNiAxMS41MSA1IDEyIDVDMTIuNDkgNSAxMi45NiA1LjA2IDEzLjQyIDUuMTdMMTUuNTkgM0wxNyA0LjQxTDE1LjM3IDYuMDRDMTYuMTIgNi41NSAxNi43NCA3LjIyIDE3LjE5IDhaTTEwIDE2SDE0VjE0SDEwVjE2Wk0xMCAxMkgxNFYxMEgxMFYxMloiIGZpbGw9IiM2MTYxNjEiLz4KICAgICAgICA8cGF0aCBkPSJNMjIgMTguNUMyMiAyMC40MzMgMjAuNDMzIDIyIDE4LjUgMjJDMTYuNTY3IDIyIDE1IDIwLjQzMyAxNSAxOC41QzE1IDE2LjU2NyAxNi41NjcgMTUgMTguNSAxNUMyMC40MzMgMTUgMjIgMTYuNTY3IDIyIDE4LjVaIiBmaWxsPSIjNjE2MTYxIi8+CiAgICA8L2c+Cjwvc3ZnPgo=);
--jp-icon-bug: url(data:image/svg+xml;base64,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);
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--jp-icon-react: url(data:image/svg+xml;base64,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);
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--jp-icon-refresh: url(data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSIxNiIgdmlld0JveD0iMCAwIDE4IDE4Ij4KICAgIDxnIGNsYXNzPSJqcC1pY29uMyIgZmlsbD0iIzYxNjE2MSI+CiAgICAgICAgPHBhdGggZD0iTTkgMTMuNWMtMi40OSAwLTQuNS0yLjAxLTQuNS00LjVTNi41MSA0LjUgOSA0LjVjMS4yNCAwIDIuMzYuNTIgMy4xNyAxLjMzTDEwIDhoNVYzbC0xLjc2IDEuNzZDMTIuMTUgMy42OCAxMC42NiAzIDkgMyA1LjY5IDMgMy4wMSA1LjY5IDMuMDEgOVM1LjY5IDE1IDkgMTVjMi45NyAwIDUuNDMtMi4xNiA1LjktNWgtMS41MmMtLjQ2IDItMi4yNCAzLjUtNC4zOCAzLjV6Ii8+CiAgICA8L2c+Cjwvc3ZnPgo=);
--jp-icon-regex: url(data:image/svg+xml;base64,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);
--jp-icon-run: url(data:image/svg+xml;base64,PHN2Z
gitextract_agenpta6/ ├── .gitattributes ├── .github/ │ └── workflows/ │ └── tests.yml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── .vscode/ │ ├── extensions.json │ ├── launch.json │ ├── settings.json │ └── tasks.json ├── CONTRIBUTING.md ├── LICENCE.txt ├── MANIFEST.in ├── README.rst ├── codemeta.json ├── docs/ │ ├── index.html │ ├── markdown_builder.py │ ├── plot_gallery.html │ ├── plot_gallery.ipynb │ └── source/ │ ├── analysis_settings.rst │ ├── arviz_integration.rst │ ├── chains.rst │ ├── conf.py │ ├── covmat.rst │ ├── densities.rst │ ├── gaussian_mixtures.rst │ ├── gui.rst │ ├── index.rst │ ├── inifile.rst │ ├── intro.rst │ ├── mcsamples.rst │ ├── paramnames.rst │ ├── parampriors.rst │ ├── plots.rst │ └── types.rst ├── getdist/ │ ├── analysis_defaults.ini │ ├── arviz_wrapper.py │ ├── chain_grid.py │ ├── chains.py │ ├── cobaya_interface.py │ ├── command_line.py │ ├── convolve.py │ ├── covcomb.py │ ├── covmat.py │ ├── covscale.py │ ├── densities.py │ ├── distparam_template.ini │ ├── gaussian_mixtures.py │ ├── gui/ │ │ ├── SyntaxHighlight.py │ │ ├── images/ │ │ │ └── GetDistGUI.icns │ │ ├── mainwindow.py │ │ └── streamlit_app.py │ ├── inifile.py │ ├── kde_bandwidth.py │ ├── matplotlib_ext.py │ ├── mcsamples.py │ ├── paramnames.py │ ├── parampriors.py │ ├── plots.py │ ├── styles/ │ │ ├── planck.paramnames │ │ ├── planck.py │ │ ├── sfmath.sty │ │ └── tab10.py │ ├── tests/ │ │ ├── getdist_test.py │ │ ├── test_arviz_wrapper.py │ │ └── test_distributions.py │ ├── types.py │ └── yaml_tools.py ├── pyproject.toml ├── requirements.txt ├── scripts/ │ ├── create_mac_dmg.sh │ ├── create_windows_msi.py │ ├── fix_qt_bundle_ambiguity.sh │ ├── fix_qt_frameworks.sh │ ├── multiprocessing_hook.py │ ├── notarize_mac_app.sh │ ├── run_plot_gallery.py │ ├── sign_mac_app.sh │ └── sign_windows_app.py └── setup.py
SYMBOL INDEX (857 symbols across 31 files)
FILE: docs/markdown_builder.py
function parse_args (line 28) | def parse_args():
function build_markdown_docs (line 45) | def build_markdown_docs():
function extract_toctree_order (line 99) | def extract_toctree_order(index_rst_path="docs/source/index.rst"):
function combine_markdown_files (line 139) | def combine_markdown_files(build_dir, exclude_files, output_file):
function convert_plot_gallery_to_markdown (line 238) | def convert_plot_gallery_to_markdown():
function main (line 272) | def main():
FILE: docs/source/conf.py
function on_missing_reference (line 25) | def on_missing_reference(_app, _env, node, contnode):
function setup (line 32) | def setup(app):
FILE: getdist/arviz_wrapper.py
function _escape_latex_text_for_subscript (line 8) | def _escape_latex_text_for_subscript(text: str) -> str:
function arviz_to_mcsamples (line 27) | def arviz_to_mcsamples(
FILE: getdist/chain_grid.py
function file_root_to_root (line 7) | def file_root_to_root(root):
function get_chain_root_files (line 11) | def get_chain_root_files(rootdir):
function is_grid_object (line 30) | def is_grid_object(obj):
function load_supported_grid (line 35) | def load_supported_grid(chain_dir):
class ChainItem (line 60) | class ChainItem:
method __init__ (line 62) | def __init__(self, batchPath, chainRoot, paramtag, name=None):
class ChainDirGrid (line 70) | class ChainDirGrid:
method __init__ (line 75) | def __init__(self, base):
method normed_name (line 98) | def normed_name(self, root):
method _add (line 101) | def _add(self, dir_tag, dirname, roots):
method _make_unique (line 109) | def _make_unique(self):
method roots_for_dir (line 126) | def roots_for_dir(self, paramtag):
method resolveRoot (line 133) | def resolveRoot(self, root):
method resolve_root (line 136) | def resolve_root(self, root):
FILE: getdist/chains.py
class WeightedSampleError (line 23) | class WeightedSampleError(Exception):
class ParamError (line 29) | class ParamError(WeightedSampleError):
function print_load_line (line 35) | def print_load_line(message):
function last_modified (line 40) | def last_modified(files):
function slice_or_none (line 50) | def slice_or_none(x, start=None, end=None):
function findChainFileRoot (line 54) | def findChainFileRoot(chain_dir, root, search_subdirectories=True):
function chainFiles (line 77) | def chainFiles(root, chain_indices=None, ext=".txt", separator="_", firs...
function hasChainFiles (line 111) | def hasChainFiles(file_root, ext=".txt"):
function loadNumpyTxt (line 115) | def loadNumpyTxt(fname, skiprows=None):
function getSignalToNoise (line 131) | def getSignalToNoise(C, noise=None, R=None, eigs_only=False):
function covToCorr (line 155) | def covToCorr(cov, copy=True):
class ParSamples (line 172) | class ParSamples:
class WeightedSamples (line 179) | class WeightedSamples:
method __init__ (line 200) | def __init__(
method setColData (line 248) | def setColData(self, coldata, are_chains=True):
method getLabel (line 260) | def getLabel(self):
method getName (line 268) | def getName(self):
method setSamples (line 276) | def setSamples(self, samples, weights=None, loglikes=None, min_weight_...
method changeSamples (line 302) | def changeSamples(self, samples):
method _weightsChanged (line 310) | def _weightsChanged(self):
method _makeParamvec (line 325) | def _makeParamvec(self, par):
method getCov (line 339) | def getCov(self, nparam=None, pars=None):
method _setCov (line 354) | def _setCov(self):
method getCorrelationMatrix (line 363) | def getCorrelationMatrix(self):
method setMeans (line 373) | def setMeans(self):
method getMeans (line 386) | def getMeans(self, pars=None):
method getVars (line 400) | def getVars(self):
method setDiffs (line 414) | def setDiffs(self):
method getAutocorrelation (line 423) | def getAutocorrelation(self, paramVec, maxOff=None, weight_units=True,...
method getCorrelationLength (line 449) | def getCorrelationLength(self, j, weight_units=True, min_corr=0.05, co...
method getEffectiveSamples (line 468) | def getEffectiveSamples(self, j=0, min_corr=0.05):
method getEffectiveSamplesGaussianKDE (line 477) | def getEffectiveSamplesGaussianKDE(self, paramVec, h=0.2, scale=None, ...
method getEffectiveSamplesGaussianKDE_2d (line 576) | def getEffectiveSamplesGaussianKDE_2d(self, i, j, h=0.3, maxoff=None, ...
method weighted_sum (line 637) | def weighted_sum(self, paramVec, where=None):
method get_norm (line 652) | def get_norm(self, where=None):
method mean (line 668) | def mean(self, paramVec, where=None):
method var (line 682) | def var(self, paramVec, where=None):
method std (line 698) | def std(self, paramVec, where=None):
method cov (line 709) | def cov(self, pars=None, where=None):
method corr (line 735) | def corr(self, pars=None):
method mean_diff (line 744) | def mean_diff(self, paramVec, where=None):
method mean_diffs (line 763) | def mean_diffs(self, pars: None | int | Sequence = None, where=None) -...
method twoTailLimits (line 782) | def twoTailLimits(self, paramVec, confidence):
method initParamConfidenceData (line 793) | def initParamConfidenceData(self, paramVec, start=0, end=None, weights...
method confidence (line 814) | def confidence(self, paramVec, limfrac, upper=False, start=0, end=None...
method getSignalToNoise (line 840) | def getSignalToNoise(self, params, noise=None, R=None, eigs_only=False):
method thin_indices (line 853) | def thin_indices(self, factor, weights=None):
method thin_indices_and_weights (line 866) | def thin_indices_and_weights(factor, weights):
method thin_indices_single_samples (line 878) | def thin_indices_single_samples(factor, weights):
method random_single_samples_indices (line 918) | def random_single_samples_indices(
method thin (line 941) | def thin(self, factor: int):
method weighted_thin (line 954) | def weighted_thin(self, factor: int):
method filter (line 968) | def filter(self, where):
method reweightAddingLogLikes (line 981) | def reweightAddingLogLikes(self, logLikes):
method cool (line 995) | def cool(self, cool: float):
method deleteZeros (line 1010) | def deleteZeros(self):
method setMinWeightRatio (line 1017) | def setMinWeightRatio(self, min_weight_ratio=1e-30):
method deleteFixedParams (line 1029) | def deleteFixedParams(self):
method removeBurn (line 1047) | def removeBurn(self, remove=0.3):
method saveAsText (line 1063) | def saveAsText(self, root, chain_index=None, make_dirs=False):
method __getitem__ (line 1087) | def __getitem__(self, item):
class Chains (line 1092) | class Chains(WeightedSamples):
method __init__ (line 1100) | def __init__(
method setSampler (line 1147) | def setSampler(self, sampler):
method setParamNames (line 1154) | def setParamNames(self, names=None):
method filter (line 1174) | def filter(self, where):
method weighted_thin (line 1192) | def weighted_thin(self, factor: int):
method getParamNames (line 1210) | def getParamNames(self):
method _getParamIndices (line 1218) | def _getParamIndices(self):
method _parAndNumber (line 1235) | def _parAndNumber(self, name):
method getRenames (line 1252) | def getRenames(self):
method updateRenames (line 1258) | def updateRenames(self, renames):
method setParams (line 1264) | def setParams(self, obj):
method getParams (line 1291) | def getParams(self):
method getParamSampleDict (line 1303) | def getParamSampleDict(self, ix, want_derived=True):
method _makeParamvec (line 1319) | def _makeParamvec(self, par):
method updateChainBaseStatistics (line 1336) | def updateChainBaseStatistics(self):
method updateBaseStatistics (line 1340) | def updateBaseStatistics(self):
method addDerived (line 1354) | def addDerived(self, paramVec, name, **kwargs):
method loadChains (line 1368) | def loadChains(self, root, files_or_samples: Sequence, weights=None, l...
method getGelmanRubinEigenvalues (line 1446) | def getGelmanRubinEigenvalues(self, nparam=None, chainlist=None):
method getGelmanRubin (line 1476) | def getGelmanRubin(self, nparam=None, chainlist=None):
method makeSingle (line 1488) | def makeSingle(self):
method getSeparateChains (line 1505) | def getSeparateChains(self) -> list["WeightedSamples"]:
method removeBurnFraction (line 1529) | def removeBurnFraction(self, ignore_frac):
method deleteFixedParams (line 1544) | def deleteFixedParams(self):
method saveAsText (line 1562) | def saveAsText(self, root, chain_index=None, make_dirs=False):
method saveTextMetadata (line 1575) | def saveTextMetadata(self, root):
method savePickle (line 1583) | def savePickle(self, filename):
FILE: getdist/cobaya_interface.py
function cobaya_params_file (line 32) | def cobaya_params_file(root):
function yaml_file_or_dict (line 43) | def yaml_file_or_dict(file_or_dict) -> Mapping:
function MCSamplesFromCobaya (line 54) | def MCSamplesFromCobaya(info, collections, name_tag=None, ignore_rows=0,...
function str_to_list (line 139) | def str_to_list(x):
function get_info_params (line 143) | def get_info_params(info):
function get_range (line 185) | def get_range(param_info):
function is_sampled_param (line 213) | def is_sampled_param(info_param):
function is_derived_param (line 220) | def is_derived_param(info_param):
function expand_info_param (line 227) | def expand_info_param(info_param):
function get_sampler_key (line 248) | def get_sampler_key(filename_or_info, default_sampler_for_chain_type="mc...
function get_sampler_type (line 252) | def get_sampler_type(filename_or_info, default_sampler_for_chain_type="m...
function get_sampler_temperature (line 260) | def get_sampler_temperature(filename_or_info):
function get_sample_label (line 270) | def get_sample_label(filename_or_info):
function get_burn_removed (line 274) | def get_burn_removed(filename_or_info):
FILE: getdist/command_line.py
function runScript (line 10) | def runScript(fname):
function getdist_script (line 15) | def getdist_script(args, exit_on_error=True):
function make_param_file (line 313) | def make_param_file(file_name, feedback=True):
function getdist_command (line 325) | def getdist_command(args=None):
function getdist_gui (line 357) | def getdist_gui():
function getdist_streamlit (line 363) | def getdist_streamlit():
FILE: getdist/convolve.py
function nearestFFTnumber (line 192) | def nearestFFTnumber(x):
function convolve1D (line 196) | def convolve1D(x, y, mode, largest_size=0, cache=None, cache_args=(1, 2)):
function convolve2D (line 205) | def convolve2D(x, y, mode, largest_size=0, cache=None, cache_args=(1, 2)):
function convolve2D_periodic (line 215) | def convolve2D_periodic(x, y, cache=None, cache_args=(1, 2), periodic_x=...
function convolve1D_periodic (line 326) | def convolve1D_periodic(x, y, cache=None, cache_args=(1, 2)):
function convolveFFT (line 371) | def convolveFFT(x, y, mode="same", yfft=None, xfft=None, largest_size=0,...
function convolveFFTn (line 405) | def convolveFFTn(in1, in2, mode="same", largest_size=0, cache=None, yfft...
function _centered (line 439) | def _centered(arr, newsize):
function autoCorrelation (line 447) | def autoCorrelation(x, n=None, normalized=True, start_index=0):
function autoConvolve (line 458) | def autoConvolve(x, n=None, normalize=True):
function convolveGaussianDCT (line 482) | def convolveGaussianDCT(x, sigma, pad_sigma=4, mode="same", cache=None):
function convolveGaussian (line 515) | def convolveGaussian(x, sigma, sigma_range=4, cache=None):
function convolveGaussianTrunc (line 539) | def convolveGaussianTrunc(x, sigma, sigma_range=4, mode="same", cache=No...
function dct2d (line 565) | def dct2d(a):
function idct2d (line 569) | def idct2d(a):
FILE: getdist/covmat.py
class CovMat (line 4) | class CovMat:
method __init__ (line 12) | def __init__(self, filename="", matrix=None, paramNames=None):
method paramNameString (line 27) | def paramNameString(self):
method loadFromFile (line 30) | def loadFromFile(self, filename):
method saveToFile (line 41) | def saveToFile(self, filename):
method rescaleParameter (line 51) | def rescaleParameter(self, name, scale):
method mergeCovmatWhereNew (line 65) | def mergeCovmatWhereNew(self, cov2):
method correlation (line 93) | def correlation(self):
method plot (line 106) | def plot(self):
FILE: getdist/densities.py
class DensitiesError (line 7) | class DensitiesError(Exception):
class InterpGridCache (line 14) | class InterpGridCache:
function getContourLevels (line 19) | def getContourLevels(inbins, contours=defaultContours, missing_norm=0, h...
class GridDensity (line 59) | class GridDensity:
method normalize (line 71) | def normalize(self, by="integral", in_place=False):
method setP (line 94) | def setP(self, P=None):
method bounds (line 109) | def bounds(self):
method getContourLevels (line 122) | def getContourLevels(self, contours=defaultContours):
class Density1D (line 132) | class Density1D(GridDensity):
method __init__ (line 139) | def __init__(self, x, P=None, view_ranges=None):
method bounds (line 152) | def bounds(self):
method _initSpline (line 160) | def _initSpline(self):
method Prob (line 163) | def Prob(self, x, derivative=0):
method integrate (line 180) | def integrate(self, P):
method norm_integral (line 183) | def norm_integral(self):
method initLimitGrids (line 186) | def initLimitGrids(self, factor=None):
method getLimits (line 206) | def getLimits(self, p, interpGrid=None, accuracy_factor=None):
class Density2D (line 251) | class Density2D(GridDensity):
method __init__ (line 257) | def __init__(self, x, y, P=None, view_ranges=None, mask=None):
method integrate (line 273) | def integrate(self, P):
method norm_integral (line 282) | def norm_integral(self):
method _initSpline (line 285) | def _initSpline(self):
method Prob (line 288) | def Prob(self, x, y, grid=False):
method __call__ (line 298) | def __call__(self, *args, **kwargs):
class DensityND (line 304) | class DensityND(GridDensity):
method __init__ (line 312) | def __init__(self, xs, P=None, view_ranges=None):
method integrate (line 337) | def integrate(self, P):
method norm_integral (line 367) | def norm_integral(self):
method _initSpline (line 370) | def _initSpline(self):
method Prob (line 373) | def Prob(self, xs):
FILE: getdist/gaussian_mixtures.py
function make_2D_Cov (line 10) | def make_2D_Cov(sigmax, sigmay, corr):
class MixtureND (line 14) | class MixtureND:
method __init__ (line 21) | def __init__(self, means, covs, weights=None, lims=None, names=None, l...
method sim (line 53) | def sim(self, size, random_state=None):
method MCSamples (line 88) | def MCSamples(self, size, names=None, logLikes=False, random_state=Non...
method autoRanges (line 113) | def autoRanges(self, sigma_max=4, lims=None):
method pdf (line 135) | def pdf(self, x):
method pdf_marged (line 157) | def pdf_marged(self, index, x, no_limit_marge=False):
method density1D (line 181) | def density1D(self, index=0, num_points=1024, sigma_max=4, no_limit_ma...
method density2D (line 200) | def density2D(self, params=None, num_points=1024, xmin=None, xmax=None...
method _params_to_indices (line 225) | def _params_to_indices(self, params):
method marginalizedMixture (line 238) | def marginalizedMixture(self, params, label=None, no_limit_marge=False...
method conditionalMixture (line 273) | def conditionalMixture(self, fixed_params, fixed_param_values, label=N...
method checkNoLimits (line 321) | def checkNoLimits(self, keep_params):
method getUpper (line 330) | def getUpper(self, name):
method getLower (line 335) | def getLower(self, name):
class Mixture2D (line 341) | class Mixture2D(MixtureND):
method __init__ (line 346) | def __init__(
method _updateLimits (line 386) | def _updateLimits(self, lims, xmin=None, xmax=None, ymin=None, ymax=No...
method _density2D (line 393) | def _density2D(self, num_points=1024, xmin=None, xmax=None, ymin=None,...
method pdf (line 402) | def pdf(self, x, y=None):
class Gaussian2D (line 425) | class Gaussian2D(Mixture2D):
method __init__ (line 430) | def __init__(self, mean, cov, **kwargs):
class GaussianND (line 439) | class GaussianND(MixtureND):
method __init__ (line 444) | def __init__(self, mean, cov, is_inv_cov=False, **kwargs):
class Mixture1D (line 460) | class Mixture1D(MixtureND):
method __init__ (line 465) | def __init__(self, means, sigmas, weights=None, lims=None, name="x", x...
method pdf (line 484) | def pdf(self, x):
class Gaussian1D (line 488) | class Gaussian1D(Mixture1D):
method __init__ (line 493) | def __init__(self, mean, sigma, **kwargs):
class RandomTestMixtureND (line 502) | class RandomTestMixtureND(MixtureND):
method __init__ (line 508) | def __init__(self, ndim=4, ncomponent=1, names=None, weights=None, see...
function randomTestMCSamples (line 527) | def randomTestMCSamples(ndim=4, ncomponent=1, nsamp=10009, nMCSamples=1,...
FILE: getdist/gui/SyntaxHighlight.py
function txformat (line 6) | def txformat(color, style=""):
function is_dark (line 46) | def is_dark():
class PythonHighlighter (line 53) | class PythonHighlighter(QSyntaxHighlighter):
method __init__ (line 94) | def __init__(self, document):
method highlightBlock (line 132) | def highlightBlock(self, text):
method match_multiline (line 153) | def match_multiline(self, text, delimiter, in_state, style):
FILE: getdist/gui/mainwindow.py
class NavigationToolbar (line 89) | class NavigationToolbar(QNavigationToolbar):
method sizeHint (line 90) | def sizeHint(self):
class GuiSelectionError (line 94) | class GuiSelectionError(Exception):
class QStatusLogger (line 98) | class QStatusLogger(logging.Handler):
method __init__ (line 99) | def __init__(self, parent, level=logging.WARNING):
method emit (line 103) | def emit(self, record):
method write (line 107) | def write(self, m):
class RootListWidget (line 112) | class RootListWidget(QListWidget):
method __init__ (line 113) | def __init__(self, widget, owner):
method dropEvent (line 125) | def dropEvent(self, event):
class MainWindow (line 131) | class MainWindow(QMainWindow):
method __init__ (line 132) | def __init__(self, app, ini=None, base_dir=None, plot_scale=1):
method createActions (line 217) | def createActions(self):
method createMenus (line 309) | def createMenus(self):
method dpiScale (line 352) | def dpiScale(self):
method createStatusBar (line 355) | def createStatusBar(self):
method showMessage (line 362) | def showMessage(self, msg="", error=False):
method _image_file (line 376) | def _image_file(self, name):
method _icon (line 398) | def _icon(self, name, large=True):
method _createWidgets (line 406) | def _createWidgets(self):
method listDirectoryChanged (line 675) | def listDirectoryChanged(self):
method closeEvent (line 678) | def closeEvent(self, event):
method getSettings (line 682) | def getSettings(self):
method getScreen (line 685) | def getScreen(self):
method readSettings (line 691) | def readSettings(self):
method writeSettings (line 719) | def writeSettings(self):
method create_message_box (line 729) | def create_message_box(self, title, text):
method warning (line 745) | def warning(self, title, message):
method export (line 752) | def export(self):
method export_clipboard (line 775) | def export_clipboard(self):
method saveScript (line 782) | def saveScript(self):
method reLoad (line 806) | def reLoad(self):
method getRootname (line 816) | def getRootname(self):
method showConvergeStats (line 827) | def showConvergeStats(self):
method showPCA (line 851) | def showPCA(self):
method showMargeStats (line 874) | def showMargeStats(self):
method showParamTable (line 893) | def showParamTable(self):
method showLikeStats (line 931) | def showLikeStats(self):
method changed_settings (line 943) | def changed_settings(self):
method showSettings (line 950) | def showSettings(self):
method settingsChanged (line 961) | def settingsChanged(self):
method showPlotSettings (line 993) | def showPlotSettings(self):
method resetPlotSettings (line 1024) | def resetPlotSettings(self):
method resetAnalysisSettings (line 1030) | def resetAnalysisSettings(self):
method plotSettingsChanged (line 1036) | def plotSettingsChanged(self, vals):
method showConfigSettings (line 1092) | def showConfigSettings(self):
method configSettingsChanged (line 1107) | def configSettingsChanged(self, vals):
method openHelpDocs (line 1131) | def openHelpDocs(self):
method openGitHub (line 1136) | def openGitHub(self):
method openPlanck (line 1141) | def openPlanck(self):
method about (line 1146) | def about(self):
method getDirectories (line 1173) | def getDirectories(self):
method saveDirectories (line 1176) | def saveDirectories(self):
method selectRootDirName (line 1187) | def selectRootDirName(self):
method openDirectory (line 1214) | def openDirectory(self, dirName, save=True):
method getPlotter (line 1252) | def getPlotter(self, chain_dir=None, loadNew=False):
method getSamples (line 1281) | def getSamples(self, root):
method _updateParameters (line 1284) | def _updateParameters(self):
method _resetPlotData (line 1327) | def _resetPlotData(self):
method _resetGridData (line 1331) | def _resetGridData(self):
method _readChainsSubdirectories (line 1337) | def _readChainsSubdirectories(self, path):
method _readGridChains (line 1360) | def _readGridChains(self, batch):
method _updateComboBoxRootname (line 1389) | def _updateComboBoxRootname(self, listOfRoots):
method newRootItem (line 1404) | def newRootItem(self, root):
method setRootname (line 1446) | def setRootname(self):
method updateListRoots (line 1452) | def updateListRoots(self):
method selListRoots (line 1457) | def selListRoots(self):
method removeRoot (line 1460) | def removeRoot(self):
method setParamTag (line 1477) | def setParamTag(self):
method setDataTag (line 1493) | def setDataTag(self):
method _updateListParameters (line 1504) | def _updateListParameters(self, items, listParameters):
method _updateListParametersSelection (line 1516) | def _updateListParametersSelection(self, oldItems, listParameters):
method getCheckedParams (line 1529) | def getCheckedParams(self, checklist, fulllist=False):
method getXParams (line 1536) | def getXParams(self, fulllist=False):
method getYParams (line 1544) | def getYParams(self):
method getZParam (line 1550) | def getZParam(self):
method statusSelectAllX (line 1553) | def statusSelectAllX(self):
method statusSelectAllY (line 1564) | def statusSelectAllY(self):
method statusPlotType (line 1575) | def statusPlotType(self, _checked):
method statusTriangle (line 1584) | def statusTriangle(self, checked):
method itemCheckChange (line 1588) | def itemCheckChange(self, _item):
method _updateComboBoxParam (line 1594) | def _updateComboBoxParam(self, combo, listOfParams):
method checkedRootNames (line 1604) | def checkedRootNames(self):
method errorReport (line 1612) | def errorReport(self, e, caption="Error", msg="", capture=False):
method closePlots (line 1632) | def closePlots(self):
method plotData (line 1637) | def plotData(self):
method updatePlot (line 1918) | def updatePlot(self):
method tabChanged (line 1942) | def tabChanged(self):
method openScript (line 1970) | def openScript(self):
method clearScript (line 1986) | def clearScript(self):
method _set_rc (line 1990) | def _set_rc(self, opts):
method plotData2 (line 1996) | def plotData2(self):
method updateScriptPreview (line 2042) | def updateScriptPreview(self, plotter, clipboard=False):
class DialogTextOutput (line 2094) | class DialogTextOutput(QDialog):
method __init__ (line 2095) | def __init__(self, parent, text=None):
method getTextBox (line 2103) | def getTextBox(self, text):
class DialogLikeStats (line 2115) | class DialogLikeStats(DialogTextOutput):
method __init__ (line 2116) | def __init__(self, parent, stats, root):
class DialogMargeStats (line 2166) | class DialogMargeStats(QDialog):
method __init__ (line 2167) | def __init__(self, parent, stats=None, root=""):
class DialogConvergeStats (line 2216) | class DialogConvergeStats(DialogTextOutput):
method __init__ (line 2217) | def __init__(self, parent, stats, summary, root):
class DialogPCA (line 2235) | class DialogPCA(DialogTextOutput):
method __init__ (line 2236) | def __init__(self, parent, PCA_text, root):
class DialogParamTables (line 2251) | class DialogParamTables(DialogTextOutput):
method __init__ (line 2252) | def __init__(self, parent, tables, root):
method tabChanged (line 2279) | def tabChanged(self):
method copyLatex (line 2294) | def copyLatex(self):
method saveLatex (line 2299) | def saveLatex(self):
class DialogSettings (line 2313) | class DialogSettings(QDialog):
method __init__ (line 2314) | def __init__(self, parent, ini, items=None, title="Analysis Settings",...
method getDict (line 2400) | def getDict(self):
method doUpdate (line 2412) | def doUpdate(self):
class DialogPlotSettings (line 2417) | class DialogPlotSettings(DialogSettings):
method doUpdate (line 2418) | def doUpdate(self):
class DialogConfigSettings (line 2422) | class DialogConfigSettings(DialogSettings):
method doUpdate (line 2423) | def doUpdate(self):
function run_gui (line 2427) | def run_gui():
FILE: getdist/gui/streamlit_app.py
function track_session_reload (line 50) | def track_session_reload():
function parse_command_line_args (line 71) | def parse_command_line_args():
function get_config_dir (line 223) | def get_config_dir():
function get_recent_dirs_file (line 240) | def get_recent_dirs_file():
function save_recent_directories (line 245) | def save_recent_directories():
function load_recent_directories (line 262) | def load_recent_directories():
function get_plotter (line 284) | def get_plotter(chain_dir=None):
function open_directory (line 307) | def open_directory(dir_path):
function update_parameters (line 347) | def update_parameters():
function add_root (line 434) | def add_root(root_name):
function show_marge_stats (line 499) | def show_marge_stats(rootname=None):
function show_like_stats (line 534) | def show_like_stats(rootname=None):
function show_converge_stats (line 569) | def show_converge_stats(rootname=None):
function show_pca (line 611) | def show_pca(rootname=None):
function reload_files (line 666) | def reload_files():
function apply_analysis_settings (line 686) | def apply_analysis_settings(settings):
function apply_plot_module (line 723) | def apply_plot_module(module_name):
function reset_analysis_settings (line 751) | def reset_analysis_settings():
function reset_plot_options (line 768) | def reset_plot_options():
function changed_settings (line 774) | def changed_settings():
function set_size_for_n (line 780) | def set_size_for_n(plotter, cols, rows, width_inch, height_inch):
function export_plot (line 801) | def export_plot(format_type):
function generate_plot (line 886) | def generate_plot():
function main (line 1358) | def main():
FILE: getdist/inifile.py
class IniError (line 6) | class IniError(Exception):
class IniFile (line 10) | class IniFile:
method __init__ (line 21) | def __init__(self, settings=None, keep_includes=False, expand_environm...
method expand_placeholders (line 45) | def expand_placeholders(self, s):
method readFile (line 70) | def readFile(self, filename, keep_includes=False, if_not_defined=False):
method __str__ (line 127) | def __str__(self):
method saveFile (line 130) | def saveFile(self, filename=None):
method fileLines (line 144) | def fileLines(self):
method replaceTags (line 170) | def replaceTags(self, placeholder, text):
method delete_keys (line 175) | def delete_keys(self, keys):
method _undefined (line 179) | def _undefined(self, name):
method hasKey (line 182) | def hasKey(self, name):
method isSet (line 191) | def isSet(self, name, allowEmpty=False):
method asType (line 201) | def asType(self, name, tp, default=None, allowEmpty=False):
method setAttr (line 216) | def setAttr(self, name, instance, default=None, allowEmpty=False):
method getAttr (line 228) | def getAttr(self, instance, name, default=None, comment=None):
method bool (line 234) | def bool(self, name, default=False):
method bool_list (line 255) | def bool_list(self, name, default=None):
method string (line 267) | def string(self, name, default=None, allowEmpty=True):
method list (line 277) | def list(self, name, default=None, tp=None):
method float (line 290) | def float(self, name, default=None):
method float_list (line 299) | def float_list(self, name, default=None):
method int (line 311) | def int(self, name, default=None):
method int_list (line 321) | def int_list(self, name, default=None):
method split (line 333) | def split(self, name, default=None, tp=None):
method ndarray (line 355) | def ndarray(self, name, default=None, tp=np.float64):
method array_int (line 365) | def array_int(self, name, index=1, default=None):
method array_string (line 375) | def array_string(self, name, index=1, default=None):
method array_bool (line 386) | def array_bool(self, name, index=1, default=None):
method array_float (line 397) | def array_float(self, name, index=1, default=None):
method relativeFileName (line 408) | def relativeFileName(self, name, default=None):
FILE: getdist/kde_bandwidth.py
function _bandwidth_fixed_point (line 59) | def _bandwidth_fixed_point(h, N, I, logI, a2):
function bin_samples (line 76) | def bin_samples(samples, range_min=None, range_max=None, nbins=2046, edg...
function gaussian_kde_bandwidth (line 90) | def gaussian_kde_bandwidth(samples, Neff=None, range_min=None, range_max...
function gaussian_kde_bandwidth_binned (line 102) | def gaussian_kde_bandwidth_binned(data, Neff, a=None):
class KernelOptimizer2D (line 146) | class KernelOptimizer2D:
method __init__ (line 147) | def __init__(self, data, Neff, correlation, do_correlation=True, fallb...
method _bandwidth_fixed_point_2D (line 177) | def _bandwidth_fixed_point_2D(self, t):
method psi (line 182) | def psi(self, s, time):
method func2d (line 188) | def func2d(self, s, t):
method func2d_odd (line 198) | def func2d_odd(self, s, t):
method psi_odd (line 209) | def psi_odd(self, s, time):
method AMISE (line 216) | def AMISE(self, cov, corr=None):
method get_h (line 234) | def get_h(self, do_correlation=None):
method get_hdiag (line 308) | def get_hdiag(self):
FILE: getdist/matplotlib_ext.py
class SciFuncFormatter (line 9) | class SciFuncFormatter(ticker.Formatter):
method __call__ (line 12) | def __call__(self, x, pos=None):
method format_data (line 15) | def format_data(self, value):
method _format_sci_notation (line 20) | def _format_sci_notation(s):
class BoundedMaxNLocator (line 44) | class BoundedMaxNLocator(ticker.MaxNLocator):
method __init__ (line 49) | def __init__(self, nbins="auto", prune=True, step_groups=([1, 2, 5, 10...
method _bounded_prune (line 63) | def _bounded_prune(self, locs, label_len):
method _get_label_len (line 71) | def _get_label_len(self, locs):
method tick_values (line 92) | def tick_values(self, vmin, vmax):
method _valid (line 218) | def _valid(self, locs):
method _spaced_ticks (line 226) | def _spaced_ticks(self, vmin, vmax, _label_len, min_ticks, nbins, chan...
function _closeto (line 351) | def _closeto(ms, edge, offset, step):
function _le (line 361) | def _le(x, offset, step):
function _ge (line 369) | def _ge(x, offset, step):
function _staircase (line 377) | def _staircase(steps, actual):
FILE: getdist/mcsamples.py
class MCSamplesError (line 29) | class MCSamplesError(WeightedSampleError):
class SettingError (line 35) | class SettingError(MCSamplesError):
class BandwidthError (line 41) | class BandwidthError(MCSamplesError):
function loadMCSamples (line 47) | def loadMCSamples(
class Kernel1D (line 129) | class Kernel1D:
method __init__ (line 130) | def __init__(self, winw, h):
class MCSamples (line 141) | class MCSamples(Chains):
method __init__ (line 149) | def __init__(
method copy (line 308) | def copy(self, label=None, settings=None) -> "MCSamples":
method setRanges (line 324) | def setRanges(self, ranges):
method parName (line 348) | def parName(self, i, starDerived=False):
method parLabel (line 358) | def parLabel(self, i):
method _setBurnOptions (line 370) | def _setBurnOptions(self, ini):
method initParameters (line 384) | def initParameters(self, ini):
method _initLimits (line 442) | def _initLimits(self, ini=None):
method updateSettings (line 472) | def updateSettings(
method readChains (line 501) | def readChains(self, files_or_samples, weights=None, loglikes=None):
method cool (line 533) | def cool(self, cool=None):
method updateBaseStatistics (line 552) | def updateBaseStatistics(self):
method makeSingleSamples (line 578) | def makeSingleSamples(self, filename="", single_thin=None, random_stat...
method writeThinData (line 608) | def writeThinData(self, fname, thin_ix, cool=1):
method getCovMat (line 637) | def getCovMat(self):
method writeCovMatrix (line 650) | def writeCovMatrix(self, filename=None):
method writeCorrelationMatrix (line 659) | def writeCorrelationMatrix(self, filename=None):
method getFractionIndices (line 668) | def getFractionIndices(self, weights, n):
method PCA (line 682) | def PCA(
method getNumSampleSummaryText (line 887) | def getNumSampleSummaryText(self):
method getConvergeTests (line 904) | def getConvergeTests(
method _get1DNeff (line 1230) | def _get1DNeff(self, par, param):
method getAutoBandwidth1D (line 1237) | def getAutoBandwidth1D(self, bins, par, param, mult_bias_correction_or...
method getAutoBandwidth2D (line 1285) | def getAutoBandwidth2D(
method _initParamRanges (line 1421) | def _initParamRanges(self, j, paramConfid=None):
method _initParam (line 1427) | def _initParam(self, par, paramVec, mean=None, sddev=None, paramConfid...
method _binSamples (line 1486) | def _binSamples(self, paramVec, par, num_fine_bins, borderfrac=0.1):
method get1DDensity (line 1500) | def get1DDensity(self, name, **kwargs):
method get1DDensityGridData (line 1517) | def get1DDensityGridData(self, j, paramConfid=None, meanlikes=False, *...
method _setEdgeMask2D (line 1688) | def _setEdgeMask2D(self, parx, pary, prior_mask, winw):
method _setAllEdgeMask2D (line 1705) | def _setAllEdgeMask2D(self, prior_mask, winw, periodic_x=False, period...
method _getScaleForParam (line 1714) | def _getScaleForParam(self, par):
method _make2Dhist (line 1724) | def _make2Dhist(self, ixs, iys, xsize, ysize):
method get2DDensity (line 1730) | def get2DDensity(self, x, y, normalized=False, **kwargs):
method get2DDensityGridData (line 1748) | def get2DDensityGridData(
method _setRawEdgeMaskND (line 2012) | def _setRawEdgeMaskND(self, parv, prior_mask):
method _flattenValues (line 2034) | def _flattenValues(self, ixs, xsizes):
method _unflattenValues (line 2044) | def _unflattenValues(self, q, xsizes):
method _makeNDhist (line 2065) | def _makeNDhist(self, ixs, xsizes):
method getRawNDDensity (line 2081) | def getRawNDDensity(self, xs, normalized=False, **kwargs):
method getRawNDDensityGridData (line 2098) | def getRawNDDensityGridData(
method _setLikeStats (line 2237) | def _setLikeStats(self):
method _readRanges (line 2280) | def _readRanges(self):
method getBounds (line 2293) | def getBounds(self):
method getUpper (line 2311) | def getUpper(self, name):
method getLower (line 2323) | def getLower(self, name):
method getBestFit (line 2335) | def getBestFit(self, max_posterior=True):
method getMargeStats (line 2353) | def getMargeStats(self, include_bestfit=False):
method getLikeStats (line 2369) | def getLikeStats(self):
method getTable (line 2379) | def getTable(self, columns=1, include_bestfit=False, **kwargs):
method getLatex (line 2390) | def getLatex(self, params=None, limit=1, err_sig_figs=None):
method getInlineLatex (line 2424) | def getInlineLatex(self, param, limit=1, err_sig_figs=None):
method _setDensitiesandMarge1D (line 2442) | def _setDensitiesandMarge1D(self, max_frac_twotail=None, meanlikes=Fal...
method _setMargeLimits (line 2460) | def _setMargeLimits(self, par, paramConfid, max_frac_twotail=None, den...
method getCorrelatedVariable2DPlots (line 2533) | def getCorrelatedVariable2DPlots(self, num_plots=12, nparam=None):
method addDerived (line 2560) | def addDerived(self, paramVec, name, label="", comment="", range=None):
method getParamBestFitDict (line 2578) | def getParamBestFitDict(self, best_sample=False, want_derived=True, wa...
method getParamSampleDict (line 2606) | def getParamSampleDict(self, ix, want_derived=True, want_fixed=True):
method getCombinedSamplesWithSamples (line 2620) | def getCombinedSamplesWithSamples(self, samps2, sample_weights=(1, 1)):
method saveTextMetadata (line 2662) | def saveTextMetadata(self, root, properties=None):
method saveChainsAsText (line 2686) | def saveChainsAsText(self, root, make_dirs=False, properties=None):
method _writeScriptPlots1D (line 2696) | def _writeScriptPlots1D(self, filename, plotparams=None, ext=None):
method _writeScriptPlots2D (line 2711) | def _writeScriptPlots2D(self, filename, plot_2D_param=None, cust2DPlot...
method _writeScriptPlotsTri (line 2749) | def _writeScriptPlotsTri(self, filename, triangle_params, ext=None):
method _writeScriptPlots3D (line 2760) | def _writeScriptPlots3D(self, filename, plot_3D, ext=None):
method _WritePlotFile (line 2774) | def _WritePlotFile(self, filename, subplot_size, text, tag, ext=None):
function getRootFileName (line 2802) | def getRootFileName(rootdir):
function _dummy_usage (line 2821) | def _dummy_usage():
FILE: getdist/paramnames.py
function makeList (line 6) | def makeList(roots):
function escapeLatex (line 20) | def escapeLatex(text):
function mergeRenames (line 29) | def mergeRenames(*dicts, **kwargs):
class ParamInfo (line 69) | class ParamInfo:
method __init__ (line 79) | def __init__(self, line=None, name="", label="", comment="", derived=F...
method nameEquals (line 91) | def nameEquals(self, name):
method setFromString (line 97) | def setFromString(self, line):
method setName (line 113) | def setName(self, name):
method getLabel (line 120) | def getLabel(self):
method latexLabel (line 126) | def latexLabel(self):
method setFromStringWithComment (line 132) | def setFromStringWithComment(self, items):
method string (line 137) | def string(self, wantComments=True):
method __str__ (line 146) | def __str__(self):
method __setstate__ (line 149) | def __setstate__(self, state):
class ParamList (line 156) | class ParamList:
method __init__ (line 165) | def __init__(self, fileName=None, setParamNameFile=None, default=0, na...
method setDefault (line 186) | def setDefault(self, n):
method setWithNames (line 190) | def setWithNames(self, names):
method setLabels (line 194) | def setLabels(self, labels):
method numDerived (line 198) | def numDerived(self):
method list (line 201) | def list(self):
method labels (line 207) | def labels(self):
method listString (line 213) | def listString(self):
method numParams (line 216) | def numParams(self):
method numNonDerived (line 219) | def numNonDerived(self):
method parWithNumber (line 222) | def parWithNumber(self, num):
method _check_name_str (line 228) | def _check_name_str(self, name):
method parWithName (line 232) | def parWithName(self, name, error=False, renames=None):
method numberOfName (line 257) | def numberOfName(self, name):
method hasParam (line 270) | def hasParam(self, name):
method parsWithNames (line 273) | def parsWithNames(self, names, error=False, renames=None):
method getMatches (line 299) | def getMatches(self, pattern, strings=False):
method setLabelsFromParamNames (line 309) | def setLabelsFromParamNames(self, fname):
method setLabelsAndDerivedFromParamNames (line 312) | def setLabelsAndDerivedFromParamNames(self, fname, set_derived=True):
method getRenames (line 324) | def getRenames(self, keep_empty=False):
method updateRenames (line 334) | def updateRenames(self, renames):
method fileList (line 344) | def fileList(self, fname):
method deleteIndices (line 349) | def deleteIndices(self, indices):
method filteredCopy (line 352) | def filteredCopy(self, params):
method addDerived (line 363) | def addDerived(self, name, **kwargs):
method maxNameLen (line 377) | def maxNameLen(self):
method parFormat (line 380) | def parFormat(self):
method name (line 384) | def name(self, ix, tag_derived=False):
method __str__ (line 391) | def __str__(self):
method saveAsText (line 397) | def saveAsText(self, filename):
method getDerivedNames (line 406) | def getDerivedNames(self):
method getRunningNames (line 412) | def getRunningNames(self):
class ParamNames (line 419) | class ParamNames(ParamList):
method loadFromFile (line 431) | def loadFromFile(self, fileName):
method loadFromKeyWords (line 472) | def loadFromKeyWords(self, keywordProvider):
method saveKeyWords (line 482) | def saveKeyWords(self, keywordProvider):
FILE: getdist/parampriors.py
class ParamBounds (line 6) | class ParamBounds:
method __init__ (line 16) | def __init__(self, fileName=None):
method loadFromFile (line 27) | def loadFromFile(self, fileName):
method __str__ (line 45) | def __str__(self):
method saveToFile (line 65) | def saveToFile(self, fileName):
method _check_name (line 74) | def _check_name(self, name):
method setFixed (line 78) | def setFixed(self, name, value):
method setRange (line 81) | def setRange(self, name, strings):
method getUpper (line 101) | def getUpper(self, name):
method getLower (line 109) | def getLower(self, name):
method fixedValue (line 117) | def fixedValue(self, name):
method fixedValueDict (line 130) | def fixedValueDict(self):
FILE: getdist/plots.py
function extend_list_zip (line 43) | def extend_list_zip(*args):
class GetDistPlotError (line 52) | class GetDistPlotError(Exception):
class GetDistPlotSettings (line 58) | class GetDistPlotSettings(_BaseObject):
method __init__ (line 151) | def __init__(self, subplot_size_inch: float = 2, fig_width_inch: float...
method _numerical_fontsize (line 244) | def _numerical_fontsize(self, size):
method scaled_fontsize (line 251) | def scaled_fontsize(self, ax_size, var, default=None):
method scaled_linewidth (line 263) | def scaled_linewidth(self, ax_size, linewidth):
method set_with_subplot_size (line 269) | def set_with_subplot_size(self, size_inch=3.5, size_mm=None, size_rati...
method rc_sizes (line 283) | def rc_sizes(self, axes_fontsize=None, lab_fontsize=None, legend_fonts...
method __str__ (line 296) | def __str__(self):
function get_plotter (line 308) | def get_plotter(style: str | None = None, **kwargs):
function get_single_plotter (line 319) | def get_single_plotter(
function get_subplot_plotter (line 350) | def get_subplot_plotter(
class RootInfo (line 395) | class RootInfo:
method __init__ (line 402) | def __init__(self, root: str, path: str, batch=None):
class MCSampleAnalysis (line 413) | class MCSampleAnalysis(_BaseObject):
method __init__ (line 421) | def __init__(self, chain_locations: str | Iterable[str], settings: str...
method add_chain_dir (line 439) | def add_chain_dir(self, chain_dir):
method reset (line 467) | def reset(self, settings=None, chain_settings_have_priority=True):
method samples_for_root (line 494) | def samples_for_root(
method add_roots (line 557) | def add_roots(self, roots):
method add_root (line 566) | def add_root(self, file_root):
method remove_root (line 583) | def remove_root(self, root):
method get_density (line 594) | def get_density(self, root, param, likes=False):
method get_density_grid (line 622) | def get_density_grid(self, root, param1, param2, conts=2, likes=False):
method load_single_samples (line 647) | def load_single_samples(self, root):
method params_for_root (line 658) | def params_for_root(self, root, label_params=None):
method bounds_for_root (line 676) | def bounds_for_root(self, root):
class GetDistPlotter (line 689) | class GetDistPlotter(_BaseObject):
method __init__ (line 699) | def __init__(
method set_default_settings (line 724) | def set_default_settings(self):
method get_single_plotter (line 730) | def get_single_plotter(cls, scaling=None, rc_sizes=False, **kwargs):
method get_subplot_plotter (line 744) | def get_subplot_plotter(
method __del__ (line 757) | def __del__(self):
method new_plot (line 761) | def new_plot(self, close_existing=None):
method show_all_settings (line 781) | def show_all_settings(self):
method _get_plot_args (line 796) | def _get_plot_args(self, plotno, **kwargs):
method _get_dashes_for_ls (line 820) | def _get_dashes_for_ls(self, ls):
method _get_default_ls (line 829) | def _get_default_ls(self, plotno=0):
method _get_line_styles (line 854) | def _get_line_styles(self, plotno, **kwargs):
method _get_color (line 875) | def _get_color(self, plotno, **kwargs):
method _get_color_at_index (line 886) | def _get_color_at_index(colors, i=None):
method _get_linestyle (line 907) | def _get_linestyle(self, plotno, **kwargs):
method _get_alpha_2d (line 917) | def _get_alpha_2d(self, plotno, **kwargs):
method param_names_for_root (line 933) | def param_names_for_root(self, root):
method param_bounds_for_root (line 946) | def param_bounds_for_root(self, root):
method _check_param_ranges (line 957) | def _check_param_ranges(self, root, name, xmin, xmax):
method _get_param_bounds (line 976) | def _get_param_bounds(self, roots, name):
method add_1d (line 982) | def add_1d(self, root, param, plotno=0, normalized=None, ax=None, titl...
method _get_paler_colors (line 1038) | def _get_paler_colors(self, color_rgb, n_levels, pale_factor=None):
method add_2d_density_contours (line 1047) | def add_2d_density_contours(self, density, **kwargs):
method _is_color_like (line 1057) | def _is_color_like(self, color):
method add_2d_contours (line 1063) | def add_2d_contours(
method add_2d_shading (line 1219) | def add_2d_shading(self, root, param1, param2, colormap=None, density=...
method add_2d_covariance (line 1261) | def add_2d_covariance(self, means, cov, xvals=None, yvals=None, def_wi...
method add_2d_mixture_projection (line 1290) | def add_2d_mixture_projection(self, mixture, param1, param2, **kwargs):
method add_x_marker (line 1294) | def add_x_marker(self, marker: float | Sequence[float], color=None, ls...
method add_y_marker (line 1315) | def add_y_marker(self, marker: float | Iterable[float], color=None, ls...
method add_param_markers (line 1336) | def add_param_markers(self, param_value_dict: dict[str, Iterable[float...
method add_x_bands (line 1352) | def add_x_bands(self, x, sigma, color="gray", ax=None, alpha1=0.15, al...
method add_y_bands (line 1382) | def add_y_bands(self, y, sigma, color="gray", ax=None, alpha1=0.15, al...
method add_bands (line 1412) | def add_bands(
method _update_limit (line 1448) | def _update_limit(self, bounds, curbounds):
method _update_limits (line 1462) | def _update_limits(self, res, xlims, ylims, do_resize=True):
method _make_line_args (line 1481) | def _make_line_args(self, nroots, **kwargs):
method _make_contour_args (line 1517) | def _make_contour_args(self, nroots, **kwargs):
method _set_axis_formatter (line 1528) | def _set_axis_formatter(self, axis, x):
method _set_axis_properties (line 1544) | def _set_axis_properties(self, axis, rotation: float = 0, tick_label_s...
method _set_main_axis_properties (line 1556) | def _set_main_axis_properties(self, axis, x):
method _no_x_ticklabels (line 1567) | def _no_x_ticklabels(ax):
method _no_y_ticklabels (line 1572) | def _no_y_ticklabels(ax):
method set_axes (line 1576) | def set_axes(
method set_xlabel (line 1626) | def set_xlabel(self, param, ax=None):
method set_ylabel (line 1640) | def set_ylabel(self, param, ax=None, **kwargs):
method set_zlabel (line 1652) | def set_zlabel(self, param, ax=None, **kwargs):
method plot_1d (line 1664) | def plot_1d(
method plot_2d (line 1788) | def plot_2d(
method default_col_row (line 1890) | def default_col_row(self, nplot=1, nx=None, ny=None):
method make_figure (line 1903) | def make_figure(self, nplot=1, nx=None, ny=None, xstretch=1.0, ystretc...
method get_param_array (line 1951) | def get_param_array(self, roots, params: None | str | Sequence = None,...
method _check_param (line 2013) | def _check_param(self, root, param, renames=None):
method param_latex_label (line 2048) | def param_latex_label(self, root, name, label_params=None):
method add_legend (line 2065) | def add_legend(
method _scaled_fontsize (line 2201) | def _scaled_fontsize(self, var, default=None):
method _scaled_linewidth (line 2204) | def _scaled_linewidth(self, linewidth):
method _subplots_adjust (line 2207) | def _subplots_adjust(self):
method _tight_layout (line 2211) | def _tight_layout(self, rect=None):
method finish_plot (line 2218) | def finish_plot(
method _root_display_name (line 2262) | def _root_display_name(self, root, i):
method _default_legend_labels (line 2283) | def _default_legend_labels(self, legend_labels, roots):
method plots_1d (line 2298) | def plots_1d(
method plots_2d (line 2404) | def plots_2d(
method plots_2d_triplets (line 2485) | def plots_2d_triplets(self, root_params_triplets, nx=None, filled=Fals...
method get_axes (line 2507) | def get_axes(self, ax=None, pars=None):
method _subplot (line 2539) | def _subplot(self, x, y, pars=None, **kwargs):
method _subplot_number (line 2556) | def _subplot_number(self, i, pars=None, **kwargs):
method _auto_ticks (line 2567) | def _auto_ticks(self, axis, max_ticks=None, prune=True):
method _inner_ticks (line 2577) | def _inner_ticks(ax, top_and_left=True):
method _get_marker (line 2582) | def _get_marker(markers, index, name):
method _make_param_object (line 2591) | def _make_param_object(names, samples, obj=None):
method _add_marker_list (line 2600) | def _add_marker_list(self, markers, ax, marker_args, y=False, color=No...
method triangle_plot (line 2613) | def triangle_plot(
method rectangle_plot (line 2990) | def rectangle_plot(
method rotate_xticklabels (line 3117) | def rotate_xticklabels(self, ax=None, rotation=90, labelsize=None):
method rotate_yticklabels (line 3128) | def rotate_yticklabels(self, ax=None, rotation=90, labelsize=None):
method add_colorbar (line 3139) | def add_colorbar(
method add_line (line 3168) | def add_line(self, xdata, ydata, zorder=0, color=None, ls=None, ax=Non...
method add_colorbar_label (line 3187) | def add_colorbar_label(self, cb, param, label_rotation=None):
method add_2d_scatter (line 3208) | def add_2d_scatter(self, root, x, y, color="k", alpha=1, extra_thin=1,...
method add_3d_scatter (line 3227) | def add_3d_scatter(
method plot_2d_scatter (line 3326) | def plot_2d_scatter(self, roots, param1, param2, color="k", line_offse...
method plot_3d (line 3360) | def plot_3d(
method plots_3d (line 3446) | def plots_3d(self, roots, param_sets, nx=None, legend_labels=None, **k...
method plots_3d_z (line 3476) | def plots_3d_z(self, roots, param_x, param_y, param_z=None, max_z=None...
method add_4d_scatter (line 3498) | def add_4d_scatter(
method plot_4d (line 3556) | def plot_4d(
method add_text (line 3739) | def add_text(self, text_label, x=0.95, y=0.06, ax=None, **kwargs):
method add_text_left (line 3759) | def add_text_left(self, text_label, x=0.05, y=0.06, ax=None, **kwargs):
method export (line 3774) | def export(self, fname=None, adir=None, watermark=None, tag=None, **kw...
method _par_name_list (line 3803) | def _par_name_list(par_list):
method get_axes_for_params (line 3806) | def get_axes_for_params(self, *pars, **kwargs):
method samples_for_root (line 3829) | def samples_for_root(self, root, file_root=None, cache=True, settings=...
class StyleManager (line 3846) | class StyleManager:
method __init__ (line 3847) | def __init__(self):
method active_class (line 3852) | def active_class(self, style=None):
method set_active_style (line 3857) | def set_active_style(self, name=None):
method add_plotter_style (line 3877) | def add_plotter_style(self, name, cls, activate=False):
function set_active_style (line 3886) | def set_active_style(name=None):
function add_plotter_style (line 3906) | def add_plotter_style(name, cls, activate=False):
FILE: getdist/styles/planck.py
class PlanckPlotter (line 8) | class PlanckPlotter(plots.GetDistPlotter):
method set_default_settings (line 25) | def set_default_settings(self):
method get_single_plotter (line 53) | def get_single_plotter(cls, **kwargs):
method get_subplot_plotter (line 62) | def get_subplot_plotter(cls, **kwargs):
FILE: getdist/styles/tab10.py
class DefaultColorsPlotter (line 8) | class DefaultColorsPlotter(plots.GetDistPlotter):
method set_default_settings (line 10) | def set_default_settings(self):
FILE: getdist/tests/getdist_test.py
class GetDistFileTest (line 20) | class GetDistFileTest(unittest.TestCase):
method setUp (line 23) | def setUp(self):
method tearDown (line 35) | def tearDown(self):
method testFileLoad (line 39) | def testFileLoad(self):
method testFileLoadPlot (line 45) | def testFileLoadPlot(self):
method testGetDist (line 69) | def testGetDist(self):
class GetDistTest (line 103) | class GetDistTest(unittest.TestCase):
method setUp (line 106) | def setUp(self):
method testBestFit (line 109) | def testBestFit(self):
method testTables (line 114) | def testTables(self):
method testPCA (line 124) | def testPCA(self):
method testLimits (line 128) | def testLimits(self):
method testDensitySymmetries (line 144) | def testDensitySymmetries(self):
method testNDDensity (line 167) | def testNDDensity(self):
method testPeriodic (line 181) | def testPeriodic(self):
method testLoads (line 227) | def testLoads(self):
method testMixtures (line 240) | def testMixtures(self):
method testPlots (line 269) | def testPlots(self):
method test_styles (line 351) | def test_styles(self):
class UtilTest (line 372) | class UtilTest(unittest.TestCase):
method _plot_with_params (line 375) | def _plot_with_params(self, scale, x, off, prune, default=False):
method test_one_locator (line 390) | def test_one_locator(self):
method test_y (line 394) | def test_y(self):
method test_specifics (line 409) | def test_specifics(self):
method test_locator (line 436) | def test_locator(self):
class CobayaTest (line 464) | class CobayaTest(unittest.TestCase):
method setUp (line 465) | def setUp(self):
method tearDown (line 473) | def tearDown(self):
method test_chains (line 477) | def test_chains(self):
method test_planck_chains (line 493) | def test_planck_chains(self):
FILE: getdist/tests/test_arviz_wrapper.py
class TestArvizWrapper (line 16) | class TestArvizWrapper(unittest.TestCase):
method setUp (line 19) | def setUp(self):
method test_basic_conversion (line 33) | def test_basic_conversion(self):
method test_mean_variance_comparison (line 44) | def test_mean_variance_comparison(self):
method test_custom_labels (line 98) | def test_custom_labels(self):
FILE: getdist/tests/test_distributions.py
function simFiles (line 22) | def simFiles(prob, file_root, sample_lengths=(1000, 2000, 5000, 10000, 2...
function compareSimPlot2D (line 31) | def compareSimPlot2D(g, samples, density, pars=("x", "y")):
function compareSimPlot (line 40) | def compareSimPlot(g, samples, density, par="x", normalized=True):
function plot1DSim (line 48) | def plot1DSim(g, prob, nsamp=default_nsamp, settings=None):
function plot2DSim (line 53) | def plot2DSim(g, prob, nsamp=default_nsamp, settings=None):
function compare1D (line 58) | def compare1D(g, probs, nsamp=default_nsamp, settings=None):
function compare2D (line 72) | def compare2D(g, probs, nsamp=default_nsamp, settings=None):
function get2DMises (line 87) | def get2DMises(prob, nsamp=default_nsamp, nsim=20, scales=np.arange(0.6,...
function get1DMises (line 104) | def get1DMises(prob, nsamp=default_nsamp, nsim=50, scales=(0.6, 1.5, 0.1...
class Test1DDistributions (line 129) | class Test1DDistributions:
method __init__ (line 130) | def __init__(self):
method cutGaussians (line 147) | def cutGaussians(self, sigma=1, cut_x=(-1.5, -1, -0.5, 0, 1, 1.5)):
method distributions (line 150) | def distributions(self):
class Test2DDistributions (line 154) | class Test2DDistributions:
method __init__ (line 155) | def __init__(self):
method cutGaussians (line 253) | def cutGaussians(self, cov, cut_x=(-2, -1, -0.5, 0, 1, 1.5, 2)):
method distributions (line 256) | def distributions(self):
function plot_compare_method (line 260) | def plot_compare_method(
function plot_compare_probs_methods (line 290) | def plot_compare_probs_methods(ax, probs, colors=plt.rcParams["axes.prop...
function compare_method_nsims (line 295) | def compare_method_nsims(g, probs, sizes=(1000, 10000), **kwargs):
function compare_method (line 302) | def compare_method(probs, nx=2, fname="", **kwargs):
function join_subplots (line 333) | def join_subplots(ax_array):
function run_test_program (line 341) | def run_test_program(plots=("dists_2D", "dists_1D"), sims=100, nsamp=def...
FILE: getdist/types.py
class TextFile (line 16) | class TextFile:
method __init__ (line 17) | def __init__(self, lines=None):
method write (line 22) | def write(self, outfile):
function texEscapeText (line 27) | def texEscapeText(string):
function times_ten_power (line 31) | def times_ten_power(exponent):
function float_to_decimal (line 35) | def float_to_decimal(f):
function numberFigs (line 50) | def numberFigs(number, sigfig, sci=False):
class NumberFormatter (line 95) | class NumberFormatter:
method __init__ (line 96) | def __init__(self, sig_figs=4, separate_limit_tol=0.1, err_sf=2):
method namesigFigs (line 102) | def namesigFigs(self, value, limplus, limminus, wantSign=True, sci=Fal...
method formatNumber (line 144) | def formatNumber(self, value, sig_figs=None, wantSign=False, sci=False):
method decimal_places (line 162) | def decimal_places(self, s):
method plusMinusLimit (line 168) | def plusMinusLimit(self, limit, upper, lower):
class TableFormatter (line 172) | class TableFormatter:
method __init__ (line 173) | def __init__(self):
method getLine (line 189) | def getLine(self, position=None):
method belowTitleLine (line 194) | def belowTitleLine(self, colsPerParam, numResults=None):
method startTable (line 197) | def startTable(self, ncol, colsPerResult, numResults):
method endTable (line 209) | def endTable(self):
method titleSubColumn (line 212) | def titleSubColumn(self, colsPerResult, title):
method formatTitle (line 225) | def formatTitle(self, title):
method texEquation (line 228) | def texEquation(self, txt):
method textAsColumn (line 234) | def textAsColumn(self, txt, latex=False, separator=False, bold=False):
class OpenTableFormatter (line 250) | class OpenTableFormatter(TableFormatter):
method __init__ (line 251) | def __init__(self):
method titleSubColumn (line 263) | def titleSubColumn(self, colsPerResult, title):
class NoLineTableFormatter (line 267) | class NoLineTableFormatter(OpenTableFormatter):
method __init__ (line 268) | def __init__(self):
method belowTitleLine (line 279) | def belowTitleLine(self, colsPerParam, numResults=None):
class ResultTable (line 283) | class ResultTable:
method __init__ (line 288) | def __init__(
method addFullTableRow (line 372) | def addFullTableRow(self, row):
method addLine (line 378) | def addLine(self, position):
method addTitlesRow (line 384) | def addTitlesRow(self, titles):
method addHeaderRow (line 394) | def addHeaderRow(self):
method paramResultsTex (line 403) | def paramResultsTex(self, param):
method paramResultTex (line 406) | def paramResultTex(self, result, p):
method paramLabelColumn (line 425) | def paramLabelColumn(self, param):
method endTable (line 428) | def endTable(self):
method tableTex (line 431) | def tableTex(self, document=False, latex_preamble=None, packages=("ams...
method write (line 454) | def write(self, fname, **kwargs):
method tablePNG (line 463) | def tablePNG(self, dpi=None, latex_preamble=None, filename=None, bytes...
class ParamResults (line 532) | class ParamResults(ParamList):
class LikelihoodChi2 (line 540) | class LikelihoodChi2:
class BestFit (line 546) | class BestFit(ParamResults):
method __init__ (line 552) | def __init__(self, fileName=None, setParamNameFile=None, want_fixed=Fa...
method getColumnLabels (line 567) | def getColumnLabels(self, **_kwargs):
method loadFromFile (line 570) | def loadFromFile(self, filename, want_fixed=False):
method sortedChiSquareds (line 621) | def sortedChiSquareds(self):
method chiSquareForKindName (line 629) | def chiSquareForKindName(self, kind, name):
method texValues (line 635) | def texValues(self, formatter, p, **_kwargs):
method getParamDict (line 642) | def getParamDict(self, include_derived=True):
class ParamLimit (line 652) | class ParamLimit:
method __init__ (line 663) | def __init__(self, minmax, tag="two"):
method limitTag (line 675) | def limitTag(self):
method limitType (line 693) | def limitType(self):
method __str__ (line 711) | def __str__(self):
class MargeStats (line 718) | class MargeStats(ParamResults):
method loadFromFile (line 739) | def loadFromFile(self, filename):
method headerLine (line 766) | def headerLine(self, inc_limits=False):
method __str__ (line 784) | def __str__(self):
method addBestFit (line 800) | def addBestFit(self, bf):
method limitText (line 811) | def limitText(self, limit):
method getColumnLabels (line 817) | def getColumnLabels(self, limit=2):
method texValues (line 824) | def texValues(self, formatter, p, limit=2, refResults=None, shiftSigma...
class LikeStats (line 900) | class LikeStats(ParamResults):
method loadFromFile (line 909) | def loadFromFile(self, filename):
method likeSummary (line 930) | def likeSummary(self):
method headerLine (line 941) | def headerLine(self):
method __str__ (line 944) | def __str__(self):
class ConvergeStats (line 958) | class ConvergeStats(ParamResults):
method loadFromFile (line 959) | def loadFromFile(self, filename):
method worstR (line 986) | def worstR(self, default=None):
FILE: getdist/yaml_tools.py
class InputSyntaxError (line 13) | class InputSyntaxError(Exception):
function yaml_load (line 20) | def yaml_load(text_stream, Loader=yaml.Loader, file_name=None):
function yaml_load_file (line 77) | def yaml_load_file(input_file):
FILE: scripts/create_windows_msi.py
function find_version (line 25) | def find_version():
function check_wix_installed (line 39) | def check_wix_installed():
function create_wix_files (line 49) | def create_wix_files(input_dir, output_dir, version):
function build_msi (line 163) | def build_msi(temp_dir, wxs_path, components_wxs_path, input_dir, output...
function main (line 193) | def main():
FILE: scripts/run_plot_gallery.py
function find_repo_root (line 21) | def find_repo_root():
function check_dependencies (line 31) | def check_dependencies():
function run_and_export_notebook (line 51) | def run_and_export_notebook(notebook_path, output_path, execute=True):
function main (line 101) | def main():
FILE: scripts/sign_windows_app.py
function find_signtool (line 37) | def find_signtool():
function download_url_to_file (line 67) | def download_url_to_file(url, destination):
function fetch_kms_integrations_releases (line 74) | def fetch_kms_integrations_releases():
function get_cng_release_version (line 87) | def get_cng_release_version(tag_name):
function is_supported_cng_release (line 96) | def is_supported_cng_release(release):
function is_cng_windows_archive (line 104) | def is_cng_windows_archive(asset_name):
function resolve_kms_cng_provider_asset (line 109) | def resolve_kms_cng_provider_asset(releases):
function resolve_kms_cng_provider_download (line 131) | def resolve_kms_cng_provider_download():
function find_installer_msi (line 144) | def find_installer_msi(search_root):
function install_kms_cng_provider (line 158) | def install_kms_cng_provider():
function collect_files_to_sign (line 190) | def collect_files_to_sign(path):
function sign_files (line 207) | def sign_files(path, signtool_path, kms_key, certfile):
function main (line 253) | def main():
Copy disabled (too large)
Download .json
Condensed preview — 79 files, each showing path, character count, and a content snippet. Download the .json file for the full structured content (14,688K chars).
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"path": ".gitattributes",
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"chars": 833,
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"path": "docs/source/chains.rst",
"chars": 96,
"preview": "getdist.chains\n==================================\n\n\n.. automodule:: getdist.chains\n :members:\n"
},
{
"path": "docs/source/conf.py",
"chars": 9218,
"preview": "#\n# MyProj documentation build configuration file, created by\n# sphinx-quickstart on Thu Jun 18 20:57:49 2015.\n#\n# This "
},
{
"path": "docs/source/covmat.rst",
"chars": 97,
"preview": "getdist.covmat\n==================================\n\n\n\n.. automodule:: getdist.covmat\n :members:\n"
},
{
"path": "docs/source/densities.rst",
"chars": 103,
"preview": "getdist.densities\n==================================\n\n\n\n.. automodule:: getdist.densities\n :members:\n"
},
{
"path": "docs/source/gaussian_mixtures.rst",
"chars": 119,
"preview": "getdist.gaussian_mixtures\n==================================\n\n\n\n.. automodule:: getdist.gaussian_mixtures\n :members:\n"
},
{
"path": "docs/source/gui.rst",
"chars": 5365,
"preview": "GetDist GUI\n===================\n\nGetDist provides two graphical user interfaces: the original Qt-based GUI and a newer S"
},
{
"path": "docs/source/index.rst",
"chars": 1578,
"preview": "GetDist\n==================================\n\nGetDist is a Python package for analysing and plotting Monte Carlo (or other"
},
{
"path": "docs/source/inifile.rst",
"chars": 99,
"preview": "getdist.inifile\n==================================\n\n\n\n.. automodule:: getdist.inifile\n :members:\n"
},
{
"path": "docs/source/intro.rst",
"chars": 55,
"preview": ".. title:: Introduction\n\n.. include:: ../../README.rst\n"
},
{
"path": "docs/source/mcsamples.rst",
"chars": 665,
"preview": "getdist.mcsamples\n==================================\n\n.. note::\n **Important Convention**: In GetDist, the ``loglikes`"
},
{
"path": "docs/source/paramnames.rst",
"chars": 105,
"preview": "getdist.paramnames\n==================================\n\n\n\n.. automodule:: getdist.paramnames\n :members:\n"
},
{
"path": "docs/source/parampriors.rst",
"chars": 107,
"preview": "getdist.parampriors\n==================================\n\n\n\n.. automodule:: getdist.parampriors\n :members:\n"
},
{
"path": "docs/source/plots.rst",
"chars": 1186,
"preview": "getdist.plots\n==================================\n\n.. currentmodule:: getdist.plots\n\nThis module is used for making plots"
},
{
"path": "docs/source/types.rst",
"chars": 95,
"preview": "getdist.types\n==================================\n\n\n\n.. automodule:: getdist.types\n :members:\n"
},
{
"path": "getdist/analysis_defaults.ini",
"chars": 3267,
"preview": "#For discarding burn-in if using raw chains\n#if < 1 interpreted as a fraction of the total number of rows (0.3 ignores f"
},
{
"path": "getdist/arviz_wrapper.py",
"chars": 15527,
"preview": "import arviz as az\nimport numpy as np\nfrom arviz.labels import BaseLabeller\n\nfrom getdist import MCSamples\n\n\ndef _escape"
},
{
"path": "getdist/chain_grid.py",
"chars": 5921,
"preview": "import glob\nimport os\n\nfrom getdist.inifile import IniFile\n\n\ndef file_root_to_root(root):\n return os.path.basename(ro"
},
{
"path": "getdist/chains.py",
"chars": 63949,
"preview": "import os\nimport pickle\nimport re\nfrom collections import namedtuple\nfrom collections.abc import Sequence\nfrom copy impo"
},
{
"path": "getdist/cobaya_interface.py",
"chars": 10616,
"preview": "# JT 2017-19\n\nimport logging\nimport os\nfrom collections.abc import Mapping, Sequence\nfrom copy import deepcopy\nfrom impo"
},
{
"path": "getdist/command_line.py",
"chars": 12408,
"preview": "import logging\nimport os\nimport subprocess\nimport sys\n\nimport getdist\nfrom getdist import IniFile, MCSamples, chains\n\n\nd"
},
{
"path": "getdist/convolve.py",
"chars": 16927,
"preview": "import numpy as np\nfrom scipy import fftpack\n\n# numbers of the form 2^n3^m5^r, even only and r<=1\nfastFFT = np.array(\n "
},
{
"path": "getdist/covcomb.py",
"chars": 464,
"preview": "# usage:\n# python covcmb.py out.covmat in1.covmat in2.covmat\n# Nb. in1 values take priority over in2\n\nimport sys\n\nfrom g"
},
{
"path": "getdist/covmat.py",
"chars": 3888,
"preview": "import numpy as np\n\n\nclass CovMat:\n \"\"\"\n Class holding a covariance matrix for some named parameters\n\n :ivar ma"
},
{
"path": "getdist/covscale.py",
"chars": 779,
"preview": "import fnmatch\nimport os\nimport sys\n\nfrom getdist import covmat\n\nif len(sys.argv) < 4:\n print(\"covscale rescales para"
},
{
"path": "getdist/densities.py",
"chars": 12458,
"preview": "from collections.abc import Sequence\n\nimport numpy as np\nfrom scipy.interpolate import LinearNDInterpolator, RectBivaria"
},
{
"path": "getdist/distparam_template.ini",
"chars": 2075,
"preview": "#Sample parameter file for \"getdist\" script (for processing .txt chain files from command line)\n\n#if you are not using ."
},
{
"path": "getdist/gaussian_mixtures.py",
"chars": 22404,
"preview": "import copy\n\nimport numpy as np\n\nfrom getdist.densities import Density1D, Density2D\nfrom getdist.mcsamples import MCSamp"
},
{
"path": "getdist/gui/SyntaxHighlight.py",
"chars": 6537,
"preview": "from PySide6.QtCore import QRegularExpression\nfrom PySide6.QtGui import QColor, QFont, QSyntaxHighlighter, QTextCharForm"
},
{
"path": "getdist/gui/mainwindow.py",
"chars": 96006,
"preview": "#!/usr/bin/env python\nimport copy\nimport logging\nimport os\n\nos.environ[\"MPLBACKEND\"] = \"Qt5Agg\"\n# os.environ[\"QT_QPA_PLA"
},
{
"path": "getdist/gui/streamlit_app.py",
"chars": 147692,
"preview": "import copy\nimport json\nimport logging\nimport os\nimport re\nimport sys\nimport time\nimport traceback\nfrom io import BytesI"
},
{
"path": "getdist/inifile.py",
"chars": 13689,
"preview": "import os\n\nimport numpy as np\n\n\nclass IniError(Exception):\n pass\n\n\nclass IniFile:\n \"\"\"\n Class for storing optio"
},
{
"path": "getdist/kde_bandwidth.py",
"chars": 11982,
"preview": "import logging\nimport warnings\n\nimport numpy as np\nfrom scipy import fftpack\nfrom scipy.optimize import brentq, fsolve, "
},
{
"path": "getdist/matplotlib_ext.py",
"chars": 16913,
"preview": "import math\nfrom bisect import bisect_left\n\nimport numpy as np\nfrom matplotlib import ticker\nfrom matplotlib.axis import"
},
{
"path": "getdist/mcsamples.py",
"chars": 122997,
"preview": "import copy\nimport glob\nimport logging\nimport math\nimport os\nimport pickle\nimport time\nfrom collections.abc import Itera"
},
{
"path": "getdist/paramnames.py",
"chars": 16530,
"preview": "import fnmatch\nimport os\nfrom itertools import chain\n\n\ndef makeList(roots):\n \"\"\"\n Checks if the given parameter is"
},
{
"path": "getdist/parampriors.py",
"chars": 4898,
"preview": "import os\n\nimport numpy as np\n\n\nclass ParamBounds:\n \"\"\"\n Class for holding list of parameter bounds (e.g. for plot"
},
{
"path": "getdist/plots.py",
"chars": 177174,
"preview": "import copy\nimport logging\nimport os\nimport sys\nimport warnings\nfrom collections.abc import Iterable, Mapping, Sequence\n"
},
{
"path": "getdist/styles/planck.paramnames",
"chars": 5921,
"preview": "omegabh2 \\Omega_{\\mathrm{b}} h^2\t#physical baryon density\nomegach2 \\Omega_{\\mathrm{c}} h^2\t#physical CDM matte"
},
{
"path": "getdist/styles/planck.py",
"chars": 2368,
"preview": "import os\n\nfrom getdist import plots\n\n# Style that roughly follows the Planck parameter papers; uses latex formatting an"
},
{
"path": "getdist/styles/sfmath.sty",
"chars": 16929,
"preview": "% sfmath.sty, copyright 2001-2007 by Olaf Dietrich (olaf@dtrx.de)\n%\n% This work may be distributed and/or modified under"
},
{
"path": "getdist/styles/tab10.py",
"chars": 518,
"preview": "from matplotlib import cm\n\nfrom getdist import plots\n\n# Simple style that uses matplotlib's default color table for cont"
},
{
"path": "getdist/tests/getdist_test.py",
"chars": 21753,
"preview": "import os\nimport shutil\nimport subprocess\nimport sys\nimport tempfile\nimport unittest\n\nimport matplotlib.pyplot as plt\nim"
},
{
"path": "getdist/tests/test_arviz_wrapper.py",
"chars": 4289,
"preview": "import unittest\n\nimport numpy as np\n\ntry:\n import pymc as pm\n\n from getdist.arviz_wrapper import arviz_to_mcsample"
},
{
"path": "getdist/tests/test_distributions.py",
"chars": 16928,
"preview": "import os\n\ntry:\n from getdist.plots import get_subplot_plotter\nexcept ImportError:\n import sys\n\n sys.path.inser"
},
{
"path": "getdist/types.py",
"chars": 38216,
"preview": "import decimal\nimport os\nimport tempfile\nfrom io import BytesIO\nfrom types import MappingProxyType\n\nimport numpy as np\n\n"
},
{
"path": "getdist/yaml_tools.py",
"chars": 2850,
"preview": "# JT 2017-19\n\nimport re\n\ntry:\n # noinspection PyPackageRequirements\n import yaml\nexcept ModuleNotFoundError:\n r"
},
{
"path": "pyproject.toml",
"chars": 2901,
"preview": "[build-system]\nrequires = [\"setuptools>=77\", \"wheel\"]\nbuild-backend = \"setuptools.build_meta\"\n\n[project]\nname = \"getdist"
},
{
"path": "requirements.txt",
"chars": 75,
"preview": "numpy>=1.23.0\nmatplotlib>=2.2.0,!=3.5.0\nscipy>=1.5.0\nPyYAML>=5.1\npackaging\n"
},
{
"path": "scripts/create_mac_dmg.sh",
"chars": 1443,
"preview": "#!/bin/bash\n# Script to create a DMG for a Mac app bundle\n\nset -e\n\n# Check if an app path was provided\nif [ $# -lt 1 ]; "
},
{
"path": "scripts/create_windows_msi.py",
"chars": 8448,
"preview": "#!/usr/bin/env python\n\"\"\"\nScript to create an MSI installer for the GetDist GUI Windows application.\nUses the WiX Toolse"
},
{
"path": "scripts/fix_qt_bundle_ambiguity.sh",
"chars": 5508,
"preview": "#!/bin/bash\n# Script to fix the \"bundle format is ambiguous\" error in Qt frameworks\n# This script specifically targets t"
},
{
"path": "scripts/fix_qt_frameworks.sh",
"chars": 4936,
"preview": "#!/bin/bash\n# Script to fix Qt frameworks in a macOS app bundle\n# This script addresses the \"bundle format is ambiguous\""
},
{
"path": "scripts/multiprocessing_hook.py",
"chars": 420,
"preview": "\"\"\"\nRuntime hook for PyInstaller to fix multiprocessing issues.\nThis script is executed before the app starts to ensure "
},
{
"path": "scripts/notarize_mac_app.sh",
"chars": 3766,
"preview": "#!/bin/bash\n# Script to notarize a Mac app bundle\n# This script handles the notarization process\n\nset -e\n\n# Check if an "
},
{
"path": "scripts/run_plot_gallery.py",
"chars": 4133,
"preview": "#!/usr/bin/env python3\n\"\"\"\nScript to run the plot gallery notebook and export it to HTML.\n\nThis script:\n1. Executes the "
},
{
"path": "scripts/sign_mac_app.sh",
"chars": 9804,
"preview": "#!/bin/bash\n# Script to sign and notarize a Mac app bundle\n# This script handles the complex framework fixing and signin"
},
{
"path": "scripts/sign_windows_app.py",
"chars": 10815,
"preview": "#!/usr/bin/env python\n\"\"\"\nScript to sign Windows executables and DLLs using signtool with Google Cloud KMS.\n\nUses the Go"
},
{
"path": "setup.py",
"chars": 52,
"preview": "from setuptools import setup\n\nsetup(name=\"getdist\")\n"
}
]
// ... and 1 more files (download for full content)
About this extraction
This page contains the full source code of the cmbant/getdist GitHub repository, extracted and formatted as plain text for AI agents and large language models (LLMs). The extraction includes 79 files (13.9 MB), approximately 3.7M tokens, and a symbol index with 857 extracted functions, classes, methods, constants, and types. Use this with OpenClaw, Claude, ChatGPT, Cursor, Windsurf, or any other AI tool that accepts text input. You can copy the full output to your clipboard or download it as a .txt file.
Extracted by GitExtract — free GitHub repo to text converter for AI. Built by Nikandr Surkov.