SYMBOL INDEX (189 symbols across 13 files)

FILE: src/LFTM.java
  class LFTM (line 23) | public class LFTM
    method main (line 25) | public static void main(String[] args)
    method help (line 92) | public static void help(CmdLineParser parser)

FILE: src/eval/ClusteringEval.java
  class ClusteringEval (line 26) | public class ClusteringEval
    method ClusteringEval (line 37) | public ClusteringEval(String inPathGoldenLabelsFile, String inPathDocT...
    method readGoldenLabelsFile (line 50) | public void readGoldenLabelsFile()
    method readDocTopicProsFile (line 76) | public void readDocTopicProsFile()
    method computePurity (line 125) | public double computePurity()
    method computeNMIscore (line 145) | public double computeNMIscore()
    method evaluate (line 179) | public static void evaluate(String pathGoldenLabelsFile,
    method main (line 229) | public static void main(String[] args)

FILE: src/models/LFDMM.java
  class LFDMM (line 34) | public class LFDMM
    method LFDMM (line 100) | public LFDMM(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFDMM (line 109) | public LFDMM(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFDMM (line 118) | public LFDMM(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFDMM (line 127) | public LFDMM(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFDMM (line 136) | public LFDMM(String pathToCorpus, String pathToWordVectorsFile, int in...
    method readWordVectorsFile (line 239) | public void readWordVectorsFile(String pathToWordVectorsFile)
    method initialize (line 280) | public void initialize()
    method initialize (line 310) | public void initialize(String pathToTopicAssignmentFile)
    method inference (line 356) | public void inference()
    method optimizeTopicVectors (line 391) | public void optimizeTopicVectors()
    method sampleSingleIteration (line 441) | public void sampleSingleIteration()
    method sampleSingleInitialIteration (line 496) | public void sampleSingleInitialIteration()
    method writeParameters (line 552) | public void writeParameters()
    method writeDictionary (line 575) | public void writeDictionary()
    method writeIDbasedCorpus (line 586) | public void writeIDbasedCorpus()
    method writeTopicAssignments (line 601) | public void writeTopicAssignments()
    method writeTopicVectors (line 616) | public void writeTopicVectors()
    method writeTopTopicalWords (line 629) | public void writeTopTopicalWords()
    method writeTopicWordPros (line 665) | public void writeTopicWordPros()
    method writeDocTopicPros (line 680) | public void writeDocTopicPros()
    method write (line 708) | public void write()
    method main (line 717) | public static void main(String args[])

FILE: src/models/LFDMM_Inf.java
  class LFDMM_Inf (line 36) | public class LFDMM_Inf
    method LFDMM_Inf (line 103) | public LFDMM_Inf(String pathToTrainingParasFile, String pathToUnseenCo...
    method parseTrainingParasFile (line 208) | private HashMap<String, String> parseTrainingParasFile(
    method initializeWordCount (line 231) | private void initializeWordCount(String pathToTrainingCorpus,
    method readWordVectorsFile (line 298) | public void readWordVectorsFile(String pathToWordVectorsFile)
    method initialize (line 341) | public void initialize()
    method inference (line 371) | public void inference()
    method optimizeTopicVectors (line 408) | public void optimizeTopicVectors()
    method sampleSingleIteration (line 461) | public void sampleSingleIteration()
    method sampleSingleInitialIteration (line 518) | public void sampleSingleInitialIteration()
    method writeParameters (line 575) | public void writeParameters()
    method writeDictionary (line 597) | public void writeDictionary()
    method writeIDbasedCorpus (line 608) | public void writeIDbasedCorpus()
    method writeTopicAssignments (line 623) | public void writeTopicAssignments()
    method writeTopicVectors (line 638) | public void writeTopicVectors()
    method writeTopTopicalWords (line 651) | public void writeTopTopicalWords()
    method writeTopicWordPros (line 688) | public void writeTopicWordPros()
    method writeDocTopicPros (line 706) | public void writeDocTopicPros()
    method write (line 736) | public void write()
    method main (line 745) | public static void main(String args[])

FILE: src/models/LFLDA.java
  class LFLDA (line 33) | public class LFLDA
    method LFLDA (line 102) | public LFLDA(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFLDA (line 111) | public LFLDA(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFLDA (line 120) | public LFLDA(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFLDA (line 129) | public LFLDA(String pathToCorpus, String pathToWordVectorsFile, int in...
    method LFLDA (line 138) | public LFLDA(String pathToCorpus, String pathToWordVectorsFile, int in...
    method readWordVectorsFile (line 242) | public void readWordVectorsFile(String pathToWordVectorsFile)
    method initialize (line 283) | public void initialize()
    method initialize (line 314) | public void initialize(String pathToTopicAssignmentFile)
    method inference (line 363) | public void inference()
    method optimizeTopicVectors (line 398) | public void optimizeTopicVectors()
    method sampleSingleIteration (line 448) | public void sampleSingleIteration()
    method sampleSingleInitialIteration (line 497) | public void sampleSingleInitialIteration()
    method writeParameters (line 547) | public void writeParameters()
    method writeDictionary (line 570) | public void writeDictionary()
    method writeIDbasedCorpus (line 581) | public void writeIDbasedCorpus()
    method writeTopicAssignments (line 596) | public void writeTopicAssignments()
    method writeTopicVectors (line 611) | public void writeTopicVectors()
    method writeTopTopicalWords (line 624) | public void writeTopTopicalWords()
    method writeTopicWordPros (line 660) | public void writeTopicWordPros()
    method writeDocTopicPros (line 675) | public void writeDocTopicPros()
    method write (line 690) | public void write()
    method main (line 699) | public static void main(String args[])

FILE: src/models/LFLDA_Inf.java
  class LFLDA_Inf (line 35) | public class LFLDA_Inf
    method LFLDA_Inf (line 105) | public LFLDA_Inf(String pathToTrainingParasFile, String pathToUnseenCo...
    method parseTrainingParasFile (line 211) | private HashMap<String, String> parseTrainingParasFile(
    method initializeWordCount (line 234) | private void initializeWordCount(String pathToTrainingCorpus,
    method readWordVectorsFile (line 302) | public void readWordVectorsFile(String pathToWordVectorsFile)
    method initialize (line 345) | public void initialize()
    method inference (line 377) | public void inference()
    method optimizeTopicVectors (line 414) | public void optimizeTopicVectors()
    method sampleSingleIteration (line 467) | public void sampleSingleIteration()
    method sampleSingleInitialIteration (line 518) | public void sampleSingleInitialIteration()
    method writeParameters (line 569) | public void writeParameters()
    method writeDictionary (line 591) | public void writeDictionary()
    method writeIDbasedCorpus (line 602) | public void writeIDbasedCorpus()
    method writeTopicAssignments (line 617) | public void writeTopicAssignments()
    method writeTopicVectors (line 632) | public void writeTopicVectors()
    method writeTopTopicalWords (line 645) | public void writeTopTopicalWords()
    method writeTopicWordPros (line 682) | public void writeTopicWordPros()
    method writeDocTopicPros (line 700) | public void writeDocTopicPros()
    method write (line 717) | public void write()
    method main (line 726) | public static void main(String args[])

FILE: src/models/TopicVectorOptimizer.java
  class TopicVectorOptimizer (line 17) | public class TopicVectorOptimizer
    method TopicVectorOptimizer (line 37) | public TopicVectorOptimizer(double[] inTopicVector, int[] inWordCount,
    method getNumParameters (line 71) | @Override
    method getParameters (line 77) | @Override
    method getParameter (line 84) | @Override
    method setParameters (line 90) | @Override
    method setParameter (line 97) | @Override
    method getValueGradient (line 103) | @Override
    method getValue (line 123) | @Override
    method computePartitionFunction (line 142) | public double computePartitionFunction(double[] elements1,

FILE: src/utility/CmdArgs.java
  class CmdArgs (line 5) | public class CmdArgs

FILE: src/utility/FuncUtils.java
  class FuncUtils (line 10) | public class FuncUtils
    method sortByValueDescending (line 12) | public static <K, V extends Comparable<? super V>> Map<K, V> sortByVal...
    method sortByValueAscending (line 32) | public static <K, V extends Comparable<? super V>> Map<K, V> sortByVal...
    method nextDiscrete (line 58) | public static int nextDiscrete(double[] probs)
    method mean (line 75) | public static double mean(double[] m)
    method stddev (line 83) | public static double stddev(double[] m)

FILE: src/utility/LBFGS.java
  class LBFGS (line 31) | public class LBFGS
    method LBFGS (line 56) | public LBFGS(Optimizable.ByGradientValue function, double inTolerance)
    method getOptimizable (line 63) | @Override
    method isConverged (line 69) | @Override
    method setLineOptimizer (line 81) | public void setLineOptimizer(LineOptimizer.ByGradient lineOpt)
    method setTolerance (line 102) | public void setTolerance(double newtol)
    method setEvaluator (line 107) | public void setEvaluator(OptimizerEvaluator.ByGradient eval)
    method getIteration (line 112) | public int getIteration()
    method optimize (line 117) | @Override
    method optimize (line 123) | @Override
    method reset (line 334) | public void reset()
    method push (line 347) | private void push(LinkedList l, double[] toadd)
    method push (line 379) | private void push(LinkedList l, double toadd)

FILE: src/utility/MTRandom.java
  class MTRandom (line 3) | public class MTRandom
    method setSeed (line 8) | public static void setSeed(long seed)
    method nextDouble (line 13) | public static double nextDouble()
    method nextInt (line 18) | public static int nextInt(int n)
    method nextBoolean (line 23) | public static boolean nextBoolean()

FILE: src/utility/MersenneTwister.java
  class MersenneTwister (line 175) | public strictfp class MersenneTwister
    method clone (line 210) | public Object clone()
    method stateEquals (line 223) | public boolean stateEquals(Object o)
    method readState (line 242) | public void readState(DataInputStream stream)
    method writeState (line 259) | public void writeState(DataOutputStream stream)
    method MersenneTwister (line 278) | public MersenneTwister()
    method MersenneTwister (line 287) | public MersenneTwister(long seed)
    method MersenneTwister (line 298) | public MersenneTwister(int[] array)
    method setSeed (line 309) | synchronized public void setSeed(long seed)
    method setSeed (line 343) | synchronized public void setSeed(int[] array)
    method next (line 382) | synchronized protected int next(int bits)
    method writeObject (line 419) | private synchronized void writeObject(ObjectOutputStream out)
    method readObject (line 426) | private synchronized void readObject(ObjectInputStream in)
    method nextBoolean (line 437) | public boolean nextBoolean()
    method nextBoolean (line 449) | public boolean nextBoolean(float probability)
    method nextBoolean (line 465) | public boolean nextBoolean(double probability)
    method nextInt (line 481) | public int nextInt(int n)
    method nextLong (line 503) | public long nextLong(long n)
    method nextDouble (line 520) | public double nextDouble()
    method nextDouble (line 551) | public double nextDouble(boolean includeZero, boolean includeOne)
    method nextFloat (line 568) | public float nextFloat()
    method nextFloat (line 599) | public float nextFloat(boolean includeZero, boolean includeOne)
    method nextBytes (line 617) | public void nextBytes(byte[] bytes)
    method nextChar (line 625) | public char nextChar()
    method nextShort (line 633) | public short nextShort()
    method nextByte (line 640) | public byte nextByte()
    method nextGaussian (line 652) | synchronized public double nextGaussian()
    method main (line 676) | public static void main(String args[])

FILE: src/utility/Parallel.java
  class Parallel (line 172) | public class Parallel
    type LoopInt (line 176) | public interface LoopInt
      method compute (line 185) | public void compute(int i);
    type ReduceInt (line 189) | public interface ReduceInt<V>
      method compute (line 199) | public V compute(int i);
      method combine (line 210) | public V combine(V v1, V v2);
    class Unsafe (line 247) | public static class Unsafe<T>
      method Unsafe (line 253) | public Unsafe()
      method get (line 267) | public T get()
      method set (line 278) | public void set(T object)
      method getAll (line 289) | public Collection<T> getAll()
    method loop (line 305) | public static void loop(int end, LoopInt body)
    method loop (line 320) | public static void loop(int begin, int end, LoopInt body)
    method loop (line 337) | public static void loop(int begin, int end, int step, LoopInt body)
    method loop (line 356) | public static void loop(int begin, int end, int step, int chunk,
    method reduce (line 386) | public static <V> V reduce(int end, ReduceInt<V> body)
    method reduce (line 402) | public static <V> V reduce(int begin, int end, ReduceInt<V> body)
    method reduce (line 420) | public static <V> V reduce(int begin, int end, int step, ReduceInt<V> ...
    method reduce (line 440) | public static <V> V reduce(int begin, int end, int step, int chunk,
    method setParallel (line 476) | public static void setParallel(boolean parallel)
    method checkArgs (line 507) | private static void checkArgs(int begin, int end, int step, int chunk)
    method argument (line 514) | public static void argument(boolean condition, String message)
    method middle (line 524) | private static int middle(int begin, int end, int step)
    class LoopIntAction (line 532) | private static class LoopIntAction
      method LoopIntAction (line 535) | LoopIntAction(int begin, int end, int step, int chunk, LoopInt body)
      method compute (line 545) | @Override
    class ReduceIntTask (line 575) | private static class ReduceIntTask<V>
      method ReduceIntTask (line 578) | ReduceIntTask(int begin, int end, int step, int chunk, ReduceInt<V> ...
      method compute (line 588) | @Override