', \"@%1\")\n notes = notes:gsub(\"%s*(.-)%s*\", \"\\n - %1\")\n notes = notes:gsub(\"\", \"\\n%1\\n\")\n notes = notes:gsub(\"(.-)
\", \"\\n%1\\n\")\n notes = notes:gsub(\"%s*(.-)%s*
\", \"\\n> %1\\n\")\n notes = notes:gsub('(.-)
', \"\\n%1\\n\")\n notes = notes:gsub(\"(.-)
\", \"\\n```\\n%1\\n```\\n\")\n notes = notes:gsub(\"
\", \"\\n\\n\")\n notes = notes:gsub(\"
\", \"\\n\\n\")\n notes = notes:gsub(\"(.-)
\", \"%1\\n\\n\")\n notes = notes:gsub(' class=\"highlight\" data%-annotation=\".-\"(.-)', \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"
\", \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"\\n\\n\\n\", \"\\n\\n\")\n return notes .. \"\\n\"\nend\n\n--- Convert HTML to Typst\n---@param notes string\nlocal notes_to_typ = function(notes)\n -- Year-page separator\n local ypsep = get_ypsep(\"typst\")\n\n notes = notes:gsub(\"(.-)
\", \"= %1\\n\")\n notes = notes:gsub(\"(.-)
\", \"== %1\\n\")\n notes = notes:gsub(\"(.-)
\", \"=== %1\\n\")\n notes = notes:gsub(\"(.-)
\", \"==== %1\\n\")\n notes = notes:gsub(\"(.-)
\", \"===== %1\\n\")\n notes = notes:gsub(\"(.-)\", \"*%1*\")\n notes = notes:gsub(\"(.-)\", \"*%1*\")\n notes = notes:gsub(\"(.-)\", \"_%1_\")\n notes = notes:gsub(\"(.-)\", \"_%1_\")\n notes =\n notes:gsub('(.-)', \"~~%1~~\")\n notes = notes:gsub(' rel=\"noopener noreferrer nofollow\"', \"\")\n notes = notes:gsub('(.-)', '#link(\"%1\")[%2]')\n notes = notes:gsub('%(.-%)', \"\")\n notes = notes:gsub(\n '.-',\n '#cite(<%1>, supplement: \"' .. ypsep .. '%2\", form: \"normal\")'\n )\n notes =\n notes:gsub('', \"@%1\")\n notes = notes:gsub(\"%s*(.-)%s*\", \"\\n - %1\")\n notes = notes:gsub(\"\", \"\\n%1\\n\")\n notes = notes:gsub(\"(.-)
\", \"\\n%1\\n\")\n notes = notes:gsub(\"%s*(.-)%s*
\", \"\\n#quote[%1]\\n\")\n notes = notes:gsub('(.-)
', \"\\n%1\\n\")\n notes = notes:gsub(\"(.-)
\", \"\\n```\\n%1\\n```\\n\")\n notes = notes:gsub(\"
\", \"\\n\\n\")\n notes = notes:gsub(\"
\", \"\\n\\n\")\n notes = notes:gsub(\"(.-)
\", \"%1\\n\\n\")\n notes = notes:gsub(' class=\"highlight\" data%-annotation=\".-\"(.-)', \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"
\", \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"\", \"\")\n notes = notes:gsub(\"\\n\\n\\n\", \"\\n\\n\")\n return notes .. \"\\n\"\nend\n\n-- Return user notes from a reference.\n---@param key string The Zotero key\n---@return string | nil\nfunction M.get_notes(key)\n if not config.zotero_sqlite_path then return end\n copy_zotero_data()\n\n local key_id = get_key_id(key)\n if not key_id then return end\n\n local query = \"SELECT parentItemID, note FROM itemNotes WHERE parentItemID = \"\n .. tostring(key_id)\n local sql_data = get_sql_data(query)\n if not sql_data then return end\n\n local notes = \"\"\n for _, v in pairs(sql_data) do\n notes = notes .. v.note\n end\n if notes == \"\" then return nil end\n\n local lang = get_ft_lang()\n notes = sanitize(notes)\n if lang == \"typst\" then\n notes = notes_to_typ(notes)\n elseif lang == \"latex\" then\n notes = notes_to_tex(notes)\n else\n notes = notes_to_md(notes)\n end\n return notes\nend\n\n--- Return information useful for debugging the application\n---@return table\nfunction M.info()\n local ntypes = {}\n local n = 0\n for _, v in pairs(entry) do\n n = n + 1\n if ntypes[v.etype] then\n ntypes[v.etype] = ntypes[v.etype] + 1\n else\n ntypes[v.etype] = 1\n end\n end\n\n local r = {\n [\"attach_dir\"] = config.attach_dir,\n [\"zotero.sqlite\"] = config.zotero_sqlite_path,\n [\"tmpdir\"] = config.tmpdir,\n [\"docs\"] = docs,\n [\"citation template\"] = cite_template,\n [\"banned words\"] = table.concat(banned_words, \" \"),\n [\"excluded fields\"] = table.concat(exclude_fields, \", \"),\n [\"n refs\"] = n,\n [\"types\"] = ntypes,\n }\n return r\nend\n\nlocal function load_zotero_data()\n if not config.zotero_sqlite_path then return end\n copy_zotero_data()\n\n get_collections()\n get_items_key_type()\n delete_items()\n add_most_fields()\n add_authors()\n add_citekeys()\nend\n\n--- Find citation key and return list of completions\n---@param ptrn string Search pattern\n---@param d string Buffer name\n---@return table\nfunction M.get_match(ptrn, d)\n if getmtime(config.zotero_sqlite_path) > ztime then load_zotero_data() end\n\n local keys = {}\n if docs[d] then\n for _, c in pairs(docs[d]) do\n for _, v in pairs(collections[c]) do\n table.insert(keys, v)\n end\n end\n end\n if #keys == 0 then\n for k, _ in pairs(entry) do\n table.insert(keys, k)\n end\n end\n\n -- priority level\n local p1, p2, p3, p4, p5, p6 = {}, {}, {}, {}, {}, {}\n\n ptrn = ptrn:lower()\n for _, v in ipairs(keys) do\n local e = entry[v]\n if e.citekey:lower():find(ptrn) == 1 then\n table.insert(p1, e)\n elseif e.alastnm and e.alastnm[1] and e.alastnm[1][1]:lower():find(ptrn) == 1 then\n table.insert(p2, e)\n elseif e.title and e.title:lower():find(ptrn) == 1 then\n table.insert(p3, e)\n elseif e.citekey:lower():find(ptrn) and e.citekey:lower():find(ptrn) > 1 then\n table.insert(p4, e)\n elseif\n e.alastnm\n and e.alastnm[1]\n and e.alastnm[1][1]:lower():find(ptrn)\n and e.alastnm[1][1]:lower():find(ptrn) > 1\n then\n table.insert(p5, e)\n elseif\n e.title\n and e.title:lower():find(ptrn)\n and e.title:lower():find(ptrn) > 1\n then\n table.insert(p6, e)\n end\n end\n\n local resp = {}\n for _, v in pairs(p1) do\n table.insert(resp, v)\n end\n for _, v in pairs(p2) do\n table.insert(resp, v)\n end\n for _, v in pairs(p3) do\n table.insert(resp, v)\n end\n for _, v in pairs(p4) do\n table.insert(resp, v)\n end\n for _, v in pairs(p5) do\n table.insert(resp, v)\n end\n for _, v in pairs(p6) do\n table.insert(resp, v)\n end\n return resp\nend\n\n--- Get Zotero data\n---@return boolean\nfunction M.init()\n -- Template for citation keys\n cite_template = config.citation_template\n if not cite_template then cite_template = \"{Authors}-{Year}\" end\n\n -- Title words to be ignored\n if config.banned_words then\n banned_words = vim.split(config.banned_words, \" \")\n else\n banned_words =\n { \"a\", \"an\", \"the\", \"some\", \"from\", \"on\", \"in\", \"to\", \"of\", \"do\", \"with\" }\n end\n\n -- Path to zotero.sqlite\n if config.zotero_sqlite_path then\n if not vim.uv.fs_access(config.zotero_sqlite_path, \"r\") then\n local msg = 'Please, check if the config option `zotero_sqlite_path` is set correctly: \"'\n .. config.zotero_sqlite_path\n .. '\" not found.'\n zwarn(msg)\n return false\n end\n end\n\n -- Path to attachments directory\n if config.attach_dir and not is_directory(config.attach_dir) then\n local msg = \"Please, fix the value `attach_dir` in your config. The directory \"\n .. config.attach_dir\n .. \" is not writable.\"\n zwarn(msg)\n return false\n end\n\n if not config.zotero_sqlite_path then\n local adir, zdir = get_zotero_prefs()\n if adir and not config.attach_dir then config.attach_dir = adir end\n if zdir then\n config.zotero_sqlite_path = zdir\n else\n return false\n end\n end\n\n -- Temporary directory\n if not config.tmpdir then\n if os.getenv(\"XDG_CACHE_HOME\") then\n config.tmpdir = os.getenv(\"XDG_CACHE_HOME\") .. \"/zotcite\"\n elseif os.getenv(\"APPDATA\") then\n config.tmpdir = os.getenv(\"APPDATA\") .. \"/zotcite\"\n elseif is_directory(expand_tilde(\"~/.cache\")) then\n config.tmpdir = expand_tilde(\"~/.cache/zotcite\")\n elseif is_directory(expand_tilde(\"~/Library/Caches\")) then\n config.tmpdir = expand_tilde(\"~/Library/Caches/zotcite\")\n else\n config.tmpdir = \"/tmp/.zotcite\"\n end\n end\n\n if not is_directory(config.tmpdir) then\n if vim.fn.mkdir(config.tmpdir, \"p\", \"0o700\") == 0 then\n zwarn(\"Error creating directory '\" .. config.tmpdir .. \"'\")\n return false\n end\n if not is_directory(config.tmpdir) then\n zwarn(\n 'Please, either set or fix the value of `tmpdir` in your zotcite config: \"'\n .. config.tmpdir\n .. '\" is not writable.'\n )\n return false\n end\n end\n\n -- Fields that should not be added to the bib entries:\n local zexcl = config.exclude_fields\n if not zexcl then\n exclude_fields = {}\n else\n exclude_fields = str_split(zexcl, \" \")\n end\n\n load_zotero_data()\n\n return true\nend\n\nreturn M\n"
},
{
"path": "plugin/zotcite.lua",
"content": "local did_plugin = false\nif did_plugin then return end\ndid_plugin = true\nvim.api.nvim_create_user_command(\"Zinfo\", \"lua require('zotcite.get').zotero_info()\", {})\n"
},
{
"path": "scripts/abntfix.py",
"content": "#!/usr/bin/env python3\n\n\"\"\"\nPandoc filter to fix ABNT citations.\n\"\"\"\n\nimport sys\nimport io\nimport json\n\ndef TitleCase(x):\n if x in [ 'et', 'al.', 'a', 'an', 'and', 'in', 'the', 'de', 'do', 'da',\n 'dos', 'das', 'com', 'na', 'no', 'nas', 'nos', 'e', 'um', 'uma']:\n return x\n return x.title()\n\ndef WalkFix(x):\n if isinstance(x, dict) and 't' in x.keys() and x['t'] == 'Cite' and x['c'][0][0]['citationMode']['t'] == 'AuthorInText':\n ultimo = 1000\n for s, vs in enumerate(x['c'][1]):\n if vs['t'] == 'Str':\n vs['c'] = TitleCase(vs['c'])\n if vs['c'].find(';') > -1:\n ultimo = s\n vs['c'] = vs['c'].replace(\";\", \",\")\n if ultimo < 1000:\n x['c'][1][ultimo]['c'] = x['c'][1][ultimo]['c'].replace(\",\", \" e\")\n else:\n if isinstance(x, dict) and 'c' in x.keys() and isinstance(x['c'], list):\n for y in x['c']:\n WalkFix(y)\n else:\n if isinstance(x, list):\n for y in x:\n WalkFix(y)\n\nif __name__ == \"__main__\":\n sys.stderr.write('Running abntfix...\\n')\n sys.stderr.flush()\n\n # Get json from pandoc (stdin)\n i = sys.stdin.read()\n j = json.load(io.StringIO(i))\n\n WalkFix(j['blocks'])\n\n # Print the json representation of the new document\n sys.stdout.write(json.dumps(j))\n"
},
{
"path": "scripts/apafix",
"content": "The R package rmdfiltr includes an ampersand replacement filter:\nhttps://cran.r-project.org/web/packages/rmdfiltr/index.html\n"
},
{
"path": "scripts/odt2md.py",
"content": "#!/usr/bin/env python3\n\n\"\"\"\nConvert an ODT file into Markdown, converting citations into zotcite format.\n\"\"\"\n\nimport sys\nimport subprocess\nimport re\nimport json\nfrom pathlib import Path\nfrom zotero import ZoteroEntries\n\nif __name__ == \"__main__\":\n cmd = ['pandoc', sys.argv[1], '-t', 'markdown']\n doc = subprocess.run(cmd, capture_output=True, text=True).stdout\n z = ZoteroEntries()\n while True:\n res = re.search(\n r\"\\[\\]{#ZOTERO_ITEM CSL_CITATION\\s(.*?),\\\\\\\"schema\\\\\\\":\\\\\\\"[\\w:/\\.-]*?\\\\\\\"}\\s\\w+}\\(.*?\\)\", doc, re.DOTALL)\n if not res:\n break\n cit = res.group(1)\n cit += \"}\"\n cit = cit.replace(\"\\\\\\\"\", \"\\\"\")\n cit = cit.replace(\"\\\\\\\\\", \"\\\\\")\n try:\n cit = json.loads(cit)\n except Exception as e:\n with open(\"debug.txt\", \"w\") as fh:\n fh.write(cit)\n raise (e)\n cit_new = \"[\"\n for cit_item in cit[\"citationItems\"]:\n cit_new += z.GetCitationById(cit_item[\"id\"]) + \";\"\n cit_new = cit_new[:-1] + \"]\"\n doc = doc[:res.start()] + cit_new + doc[res.end():]\n inf = Path(sys.argv[1])\n outf = inf.parent / (inf.stem+\".md\")\n with open(outf, \"w\") as fh:\n fh.write(doc)\n"
},
{
"path": "scripts/pdfnotes.py",
"content": "#!/usr/bin/env python3\n\n\"\"\"\nAdapted from code written by Hamed MP, published at\nhttps://gist.github.com/HamedMP/03440cca542ee7ae279175b78499fabf\n\"\"\"\n\nimport sys\nimport os\nimport re\n\ntry:\n import PyQt5\nexcept ImportError:\n sys.stderr.write(\"Please, install the Python3 module PyQt5\")\n sys.exit(1)\n\ntry:\n import popplerqt5\nexcept ImportError:\n sys.stderr.write(\"Please, install the Python3 module python-poppler-qt5\")\n sys.exit(1)\n\ndef main():\n\n doc = popplerqt5.Poppler.Document.load(sys.argv[1])\n if doc is None:\n sys.exit(33)\n\n if len(sys.argv) > 2:\n citekey = sys.argv[2]\n else:\n citekey = ''\n\n # Sometimes, the page labels are spurious. So the priority is:\n # 1. given page range; 2. page label; 3. given starting page.\n page1 = 1\n has_pg_range = False\n if len(sys.argv) > 3:\n pg = sys.argv[3]\n if pg.find(\"-\"):\n has_pg_range = True\n pIni = int(re.sub(\"-.*\", \"\", pg))\n pEnd = int(re.sub(\".*-\", \"\", pg))\n nPgs = pEnd - pIni + 1\n\n # Some documents have 1 or 2 extra presentation pages. Ignore them.\n if doc.numPages() <= nPgs and (nPgs - doc.numPages()) < 2:\n page1 = pEnd - doc.numPages() + 1\n else:\n page1 = int(sys.argv[3])\n\n if os.getenv('ZYearPageSep') is None:\n ypsep = ', p. '\n else:\n ypsep = os.getenv('ZYearPageSep')\n\n notes = []\n\n # Count the pages because not all page labels can be easily converted into\n # numbers (examples: A1 and III)\n pnum = 0\n\n for i in range(doc.numPages()):\n page = doc.page(i)\n pnum += 1\n pgnum = str(i + page1)\n if not has_pg_range and page.label():\n pgnum = page.label()\n\n annotations = page.annotations()\n (pwidth, pheight) = (page.pageSize().width(), page.pageSize().height())\n if annotations:\n for a in annotations:\n if isinstance(a, popplerqt5.Poppler.Annotation):\n # Guess the annotation's column for pages with two columns\n if a.boundary().topRight().x() < 0.6:\n c = 1\n else:\n c = 2\n\n # Get the y coordinate to to print the annotations in the\n # correct order\n y = a.boundary().topRight().y()\n\n if a.contents():\n txt = a.contents() + ' [annotation'\n if a.author():\n txt = txt + ' by ' + a.author()\n if citekey:\n txt = txt + ' on ' + citekey\n txt = txt + ypsep + pgnum + ']\\n'\n\n # Decrease the value of y to ensure that the comment\n # on a highlighted text will be printed before the\n # highlighted text itself\n notes.append([pnum, c, y - 0.0000001, txt])\n\n if isinstance(a, popplerqt5.Poppler.HighlightAnnotation):\n quads = a.highlightQuads()\n txt = ''\n for quad in quads:\n rect = (quad.points[0].x() * pwidth,\n quad.points[0].y() * pheight,\n quad.points[2].x() * pwidth,\n quad.points[2].y() * pheight)\n bdy = PyQt5.QtCore.QRectF()\n bdy.setCoords(*rect)\n txt = txt + str(page.text(bdy)) + '\\n'\n\n txt = txt.replace('-\\n', '')\n txt = txt.replace('\\n', ' ')\n txt = re.sub('^ *', '', txt)\n txt = re.sub(' *$', '', txt)\n if txt:\n txt = '> ' + txt + ' ['\n if citekey:\n txt = txt + citekey\n txt = txt + ypsep + pgnum + ']\\n'\n notes.append([pnum, c, y, txt])\n\n if notes:\n snotes = sorted(notes, key=lambda x: (x[0], x[1], x[2]))\n for n in snotes:\n print(n[3])\n else:\n sys.exit(34)\n\nif __name__ == \"__main__\":\n main()\n"
},
{
"path": "scripts/pdfnotes2.py",
"content": "#!/usr/bin/env python3\n\n\"\"\"\nPDF annotation extraction tool for zotcite using PyMuPDF (fitz)\n\"\"\"\n\nimport sys\nimport os\nimport re\n\ntry:\n import fitz # PyMuPDF\nexcept ImportError:\n sys.stderr.write(\"Please install the Python3 module pymupdf: pip install pymupdf\")\n sys.exit(1)\n\ndef main():\n # Check arguments\n if len(sys.argv) < 2:\n sys.stderr.write(\"Usage: pdfnotes.py PDF_FILE [CITEKEY] [PAGE_OFFSET]\\n\")\n sys.exit(1)\n\n # Load the PDF file\n try:\n doc = fitz.open(sys.argv[1])\n except Exception as e:\n sys.stderr.write(f\"Error opening PDF: {e}\\n\")\n sys.exit(33)\n\n # Get the citation key if provided\n if len(sys.argv) > 2:\n citekey = sys.argv[2]\n else:\n citekey = ''\n\n # Get page offset\n page1 = 1\n has_pg_range = False\n if len(sys.argv) > 3:\n pg = sys.argv[3]\n try:\n # Check if it's a page range with hyphen\n if \"-\" in pg:\n has_pg_range = True\n pIni = int(re.sub(\"-.*\", \"\", pg))\n pEnd = int(re.sub(\".*-\", \"\", pg))\n nPgs = pEnd - pIni + 1\n\n # Some documents have 1 or 2 extra presentation pages. Ignore them.\n if doc.page_count <= nPgs and (nPgs - doc.page_count) < 2:\n page1 = pEnd - doc.page_count + 1\n else:\n # Try to convert to an integer\n try:\n page1 = int(pg)\n except ValueError:\n # Not a valid page number, might be a Zotero key passed by mistake\n sys.stderr.write(f\"Warning: Third argument '{pg}' is not a valid page number. Using default page 1.\\n\")\n page1 = 1\n except Exception as e:\n # Catch any other errors in page number parsing\n sys.stderr.write(f\"Warning: Error parsing page number: {e}. Using default page 1.\\n\")\n page1 = 1\n\n # Get year-page separator from environment\n ypsep = os.getenv('ZYearPageSep')\n if ypsep is None:\n ypsep = ', p. '\n\n notes = []\n\n # Process each page\n for page_idx in range(doc.page_count):\n page = doc[page_idx]\n pnum = page_idx + 1\n\n # Handle page numbering\n pgnum = str(page_idx + page1)\n\n # Try to use page labels if available and not using a range\n if not has_pg_range:\n try:\n # Get page label if available (Roman numerals, etc.)\n if hasattr(doc, \"get_page_labels\"):\n label = doc.get_page_labels()[page_idx]\n if label and label.strip():\n pgnum = label\n except:\n pass # Fallback to numeric page\n\n # Get annotations\n annots = page.annots()\n if not annots:\n continue\n\n # Page dimensions for positioning\n pwidth, _ = page.rect.width, page.rect.height\n\n # Process annotations on this page\n for annot in annots:\n # Get annotation type\n annot_type = annot.type[1]\n\n # Get coordinates for sorting (top of annotation)\n rect = annot.rect\n x, y = rect.x0, rect.y0\n\n # Guess column (for dual-column documents)\n c = 1 if x < (pwidth / 2) else 2\n\n # Get contents (annotation text)\n contents = annot.info.get(\"content\", \"\")\n\n # Get author if available\n author = annot.info.get(\"title\", \"\")\n\n # Process text comments/notes\n if contents and annot_type in [\"Text\", \"FreeText\", \"Note\"]:\n txt = contents + ' [annotation'\n if author:\n txt += ' by ' + author\n if citekey:\n txt += ' on ' + citekey\n txt += ypsep + pgnum + ']\\n'\n\n # Add to notes list (with slight y-offset to ensure comments come before highlights)\n notes.append([pnum, c, y - 0.0000001, txt])\n\n # Process highlighted text\n if annot_type in [\"Highlight\", \"Underline\"]:\n # Extract text from the highlighted region\n text = \"\"\n try:\n # Use word extraction so that only words mostly inside the highlight are included.\n words = page.get_text(\"words\")\n for word in words:\n if len(word) >= 5: # Ensure all required fields are present\n word_rect = fitz.Rect(word[:4])\n inter_rect = rect & word_rect # Compute the intersection rectangle\n # Only add the word if more than 50% of its area is inside the annotation\n if word_rect.get_area() > 0 and (inter_rect.get_area() / word_rect.get_area()) > 0.5:\n text += word[4] + \" \"\n except Exception:\n try:\n all_text = page.get_text(\"text\")\n if all_text:\n text = \"[Highlighted text could not be extracted precisely]\"\n except Exception:\n pass\n\n # Clean up the text\n if text:\n text = text.replace('-\\n', '')\n text = text.replace('\\n', ' ')\n text = re.sub(r'^\\s*', '', text)\n text = re.sub(r'\\s*$', '', text)\n text = re.sub(r'\\s+', ' ', text)\n\n if text.strip():\n txt = '> ' + text + ' ['\n if citekey:\n txt += citekey\n txt += ypsep + pgnum + ']\\n'\n notes.append([pnum, c, y, txt])\n\n # Close the document\n doc.close()\n\n # Check if we found any notes\n if notes:\n # Sort notes by page, column, and y-position\n snotes = sorted(notes, key=lambda x: (x[0], x[1], x[2]))\n for n in snotes:\n print(n[3], end='\\n')\n else:\n sys.stderr.write(f\"No annotations found in the PDF: {sys.argv[1]}\\n\")\n sys.exit(34)\n\nif __name__ == \"__main__\":\n main()\n"
},
{
"path": "scripts/zotid2bbtcitkey.py",
"content": "#!/usr/bin/env python3\n\n# Convert Zotero IDs into Better BibTeX (BBT) citation keys in a Markdown document\n# These are the citation keys exported by Zotero File->Export Library with the \"Better BibLaTeX\" format\n# and can be used in Quarto by setting the `bibliography:` YAML parameter to the exported .bib file\n\nimport requests\nimport sys\nimport json\nimport re\n\n\ndef zotid2citkey(zotid):\n # Convert a Zotero ID into a Better BibTeX (BBT) citation key\n #\n # See\n # https://github.com/retorquere/zotero-better-bibtex/discussions/3034#discussioncomment-11029462\n url = \"http://localhost:23119/better-bibtex/json-rpc\"\n headers = {\n \"Content-Type\": \"application/json\",\n \"Accept\": \"application/json\"\n }\n data = {\n \"jsonrpc\": \"2.0\",\n \"method\": \"item.citationkey\",\n \"params\": {\"item_keys\": [zotid]}\n }\n res = requests.post(url=url, headers=headers, data=json.dumps(data))\n ress = list(res.json()[\"result\"].items())\n citkey = ress[0][1]\n return (citkey)\n\n\nfh = open(sys.argv[1], \"r\")\ninf = fh.read()\nfh.close()\n\nms = re.finditer(r\"@\\w+#[\\w-]+(?=\\]|;)\", inf)\n\nlast_m = None\nfor m in ms:\n if last_m is None:\n outs = inf[0:m.start()]\n else:\n outs += inf[last_m.end():m.start()]\n last_m = m\n zotid = m.group(0)\n if \"#\" in zotid:\n zotid = zotid.split(\"#\")[0]\n zotid = re.sub(\"^@\", \"\", zotid)\n bbtid = zotid2citkey(zotid)\n outs += \"@\" + bbtid\n\n# Insert last part\nouts += inf[last_m.end():]\n\nwith open(sys.argv[2], \"w\") as fh:\n fh.write(outs)\n"
},
{
"path": "selene.toml",
"content": "# Set the base std to your custom library, which you'll put in std_dirs\nstd = \"vim\"\n\n[rules]\nmultiple_statements = \"allow\"\n\n[config]\n# Point Selene to the directory containing your nvim.toml file.\n# Assuming nvim.toml is in the same directory as selene.toml ('.').\nstd_dirs = [ \".\" ]\n"
},
{
"path": "stylua.toml",
"content": "column_width = 90\nline_endings = \"Unix\"\nindent_type = \"Spaces\"\nindent_width = 4\nquote_style = \"AutoPreferDouble\"\ncall_parentheses = \"Always\"\ncollapse_simple_statement = \"Always\"\n\n[sort_requires]\nenabled = false\n"
},
{
"path": "vim.yml",
"content": "---\nbase: lua51\nglobals:\n vim:\n any: true\n pandoc:\n any: true\n"
}
]