SYMBOL INDEX (42 symbols across 5 files)

FILE: config.py
  function BIN_config_DBPE (line 1) | def BIN_config_DBPE():

FILE: models.py
  class BIN_Interaction_Flat (line 16) | class BIN_Interaction_Flat(nn.Sequential):
    method __init__ (line 21) | def __init__(self, **config):
    method forward (line 73) | def forward(self, d, p, d_mask, p_mask):
  class LayerNorm (line 124) | class LayerNorm(nn.Module):
    method __init__ (line 125) | def __init__(self, hidden_size, variance_epsilon=1e-12):
    method forward (line 132) | def forward(self, x):
  class Embeddings (line 139) | class Embeddings(nn.Module):
    method __init__ (line 142) | def __init__(self, vocab_size, hidden_size, max_position_size, dropout...
    method forward (line 150) | def forward(self, input_ids):
  class SelfAttention (line 164) | class SelfAttention(nn.Module):
    method __init__ (line 165) | def __init__(self, hidden_size, num_attention_heads, attention_probs_d...
    method transpose_for_scores (line 181) | def transpose_for_scores(self, x):
    method forward (line 186) | def forward(self, hidden_states, attention_mask):
  class SelfOutput (line 215) | class SelfOutput(nn.Module):
    method __init__ (line 216) | def __init__(self, hidden_size, hidden_dropout_prob):
    method forward (line 222) | def forward(self, hidden_states, input_tensor):
  class Attention (line 229) | class Attention(nn.Module):
    method __init__ (line 230) | def __init__(self, hidden_size, num_attention_heads, attention_probs_d...
    method forward (line 235) | def forward(self, input_tensor, attention_mask):
  class Intermediate (line 240) | class Intermediate(nn.Module):
    method __init__ (line 241) | def __init__(self, hidden_size, intermediate_size):
    method forward (line 245) | def forward(self, hidden_states):
  class Output (line 250) | class Output(nn.Module):
    method __init__ (line 251) | def __init__(self, intermediate_size, hidden_size, hidden_dropout_prob):
    method forward (line 257) | def forward(self, hidden_states, input_tensor):
  class Encoder (line 263) | class Encoder(nn.Module):
    method __init__ (line 264) | def __init__(self, hidden_size, intermediate_size, num_attention_heads...
    method forward (line 270) | def forward(self, hidden_states, attention_mask):
  class Encoder_MultipleLayers (line 277) | class Encoder_MultipleLayers(nn.Module):
    method __init__ (line 278) | def __init__(self, n_layer, hidden_size, intermediate_size, num_attent...
    method forward (line 283) | def forward(self, hidden_states, attention_mask, output_all_encoded_la...

FILE: setup.py
  function readme (line 7) | def readme():

FILE: stream.py
  function protein2emb_encoder (line 32) | def protein2emb_encoder(x):
  function drug2emb_encoder (line 52) | def drug2emb_encoder(x):
  class BIN_Data_Encoder (line 75) | class BIN_Data_Encoder(data.Dataset):
    method __init__ (line 77) | def __init__(self, list_IDs, labels, df_dti):
    method __len__ (line 83) | def __len__(self):
    method __getitem__ (line 87) | def __getitem__(self, index):

FILE: train.py
  function get_task (line 40) | def get_task(task_name):
  function test (line 49) | def test(data_generator, model):
  function main (line 114) | def main():