SYMBOL INDEX (1847 symbols across 165 files)

FILE: src/main/java/org/janelia/saalfeldlab/n5/AbstractDataBlock.java
  class AbstractDataBlock (line 13) | public abstract class AbstractDataBlock<T> implements DataBlock<T> {
    method AbstractDataBlock (line 20) | public AbstractDataBlock(
    method getSize (line 32) | @Override
    method getGridPosition (line 38) | @Override
    method getData (line 44) | @Override
    method getNumElements (line 50) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/BufferedKvaLockedChannel.java
  class BufferedKvaLockedChannel (line 9) | class BufferedKvaLockedChannel implements LockedChannel {
    method BufferedKvaLockedChannel (line 15) | BufferedKvaLockedChannel(final KeyValueAccess kva, final String key) {
    method newReader (line 20) | @Override
    method newInputStream (line 26) | @Override
    method newWriter (line 39) | @Override
    method newOutputStream (line 45) | @Override
    method close (line 52) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/ByteArrayDataBlock.java
  class ByteArrayDataBlock (line 3) | public class ByteArrayDataBlock extends AbstractDataBlock<byte[]> {
    method ByteArrayDataBlock (line 5) | public ByteArrayDataBlock(final int[] size, final long[] gridPosition,...

FILE: src/main/java/org/janelia/saalfeldlab/n5/Bzip2Compression.java
  class Bzip2Compression (line 12) | @CompressionType("bzip2")
    method Bzip2Compression (line 22) | public Bzip2Compression(final int blockSize) {
    method Bzip2Compression (line 27) | public Bzip2Compression() {
    method equals (line 32) | @Override
    method decode (line 41) | @Override
    method encode (line 50) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/CachedGsonKeyValueN5Reader.java
  type CachedGsonKeyValueN5Reader (line 19) | public interface CachedGsonKeyValueN5Reader extends GsonKeyValueN5Reader...
    method newCache (line 21) | default N5JsonCache newCache() {
    method cacheMeta (line 26) | boolean cacheMeta();
    method getCache (line 28) | N5JsonCache getCache();
    method getAttributesFromContainer (line 30) | @Override
    method getDatasetAttributes (line 38) | @Override
    method normalGetDatasetAttributes (line 56) | default DatasetAttributes normalGetDatasetAttributes(final String path...
    method getAttribute (line 63) | @Override
    method getAttribute (line 85) | @Override
    method exists (line 106) | @Override
    method existsFromContainer (line 117) | @Override
    method groupExists (line 127) | @Override
    method isGroupFromContainer (line 138) | @Override
    method isGroupFromAttributes (line 144) | @Override
    method datasetExists (line 150) | @Override
    method isDatasetFromContainer (line 160) | @Override
    method isDatasetFromAttributes (line 166) | @Override
    method getAttributes (line 180) | @Override
    method list (line 193) | @Override
    method listFromContainer (line 204) | @Override
    method hasDatasetAttributes (line 219) | static boolean hasDatasetAttributes(final JsonElement attributes) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/CachedGsonKeyValueN5Writer.java
  type CachedGsonKeyValueN5Writer (line 12) | public interface CachedGsonKeyValueN5Writer extends CachedGsonKeyValueN5...
    method setVersion (line 14) | @Override
    method createGroup (line 25) | @Override
    method writeAttributes (line 63) | @Override
    method writeAndCacheAttributes (line 71) | default void writeAndCacheAttributes(
    method remove (line 97) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/ChannelLock.java
  class ChannelLock (line 18) | class ChannelLock implements Closeable {
    method ChannelLock (line 35) | private ChannelLock(final FileChannel channel, final FileLock lock) {
    method close (line 40) | public void close() throws IOException {
    method getChannel (line 50) | FileChannel getChannel() {
    method lock (line 69) | static ChannelLock lock(final Path path, final boolean forWriting, fin...
    method openFileChannel (line 106) | private static FileChannel openFileChannel(final Path path, final bool...
    method closeQuietly (line 119) | private static void closeQuietly(final FileChannel fileChannel) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/Compression.java
  type Compression (line 29) | public interface Compression extends Serializable, DataCodec, DataCodecI...
    method getType (line 53) | default String getType() {
    method create (line 62) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/CompressionAdapter.java
  class CompressionAdapter (line 31) | public class CompressionAdapter implements JsonDeserializer<Compression>...
    method getDeclaredFields (line 38) | private static ArrayList<Field> getDeclaredFields(Class<?> clazz) {
    method update (line 47) | @SuppressWarnings("unchecked")
    method update (line 84) | public static void update() {
    method serialize (line 89) | @Override
    method deserialize (line 120) | @Override
    method getJsonAdapter (line 153) | public static CompressionAdapter getJsonAdapter() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/DataBlock.java
  type DataBlock (line 11) | public interface DataBlock<T> {
    method getSize (line 22) | int[] getSize();
    method getGridPosition (line 32) | long[] getGridPosition();
    method getData (line 39) | T getData();
    method getNumElements (line 48) | int getNumElements();
    method getNumElements (line 57) | static int getNumElements(final int[] size) {
    type DataBlockFactory (line 71) | interface DataBlockFactory<T> {
      method createDataBlock (line 85) | DataBlock<T> createDataBlock(int[] blockSize, long[] gridPosition, T...

FILE: src/main/java/org/janelia/saalfeldlab/n5/DataType.java
  type DataType (line 18) | public enum DataType {
    method DataType (line 97) | DataType(final String label, final DataBlockFactory dataBlockFactory) {
    method toString (line 103) | @Override
    method fromString (line 109) | public static DataType fromString(final String string) {
    method createDataBlock (line 129) | public DataBlock<?> createDataBlock(final int[] blockSize, final long[...
    method createDataBlock (line 144) | public DataBlock<?> createDataBlock(final int[] blockSize, final long[...
    type DataBlockFactory (line 149) | private interface DataBlockFactory {
      method createDataBlock (line 151) | DataBlock<?> createDataBlock(final int[] blockSize, final long[] gri...
    class JsonAdapter (line 154) | static public class JsonAdapter implements JsonDeserializer<DataType>,...
      method deserialize (line 156) | @Override
      method serialize (line 165) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/DatasetAttributes.java
  class DatasetAttributes (line 44) | public class DatasetAttributes implements Serializable {
    method DatasetAttributes (line 81) | public DatasetAttributes(
    method DatasetAttributes (line 109) | public DatasetAttributes(
    method DatasetAttributes (line 121) | public DatasetAttributes(
    method DatasetAttributes (line 140) | public DatasetAttributes(
    method DatasetAttributes (line 156) | public DatasetAttributes(
    method createDatasetAccess (line 164) | private DatasetAccess<?> createDatasetAccess() {
    method blockCodecWithDatasetCodecs (line 212) | @SuppressWarnings("unchecked")
    method nestingDepth (line 225) | private static int nestingDepth(BlockCodecInfo info) {
    method defaultBlockCodecInfo (line 234) | protected BlockCodecInfo defaultBlockCodecInfo() {
    method getDimensions (line 239) | public long[] getDimensions() {
    method getNumDimensions (line 244) | public int getNumDimensions() {
    method getChunkSize (line 249) | public int[] getChunkSize() {
    method getBlockSize (line 254) | public int[] getBlockSize() {
    method getDefaultValue (line 259) | public JsonElement getDefaultValue() {
    method isSharded (line 264) | public boolean isSharded() {
    method getCompression (line 278) | @Deprecated
    method getDataType (line 288) | public DataType getDataType() {
    method getDatasetAccess (line 298) | protected <T> DatasetAccess<T> getDatasetAccess() {
    method getNestedBlockGrid (line 309) | public NestedGrid getNestedBlockGrid() {
    method getBlockCodecInfo (line 314) | public BlockCodecInfo getBlockCodecInfo() {
    method getDataCodecInfos (line 319) | public DataCodecInfo[] getDataCodecInfos() {
    method getDatasetCodecInfos (line 324) | public DatasetCodecInfo[] getDatasetCodecInfos() {
    method relativeBlockPath (line 329) | public String relativeBlockPath(long... position) {
    method asMap (line 334) | public HashMap<String, Object> asMap() {
    method builder (line 344) | public static Builder builder(final long[] dimensions, final DataType ...
    method builder (line 349) | public static Builder builder(final DatasetAttributes attributes) {
    method defaultBlockSize (line 359) | protected static int[] defaultBlockSize(final long[] dimensions) {
    class Builder (line 377) | public static class Builder {
      method Builder (line 385) | public Builder(final long[] dimensions, final DataType dataType) {
      method Builder (line 392) | public Builder(final DatasetAttributes attributes) {
      method blockSize (line 400) | public Builder blockSize(final int[] blockSize) {
      method compression (line 413) | public Builder compression(final Compression compression) {
      method build (line 420) | public DatasetAttributes build() {
    method getJsonAdapter (line 428) | public static DatasetAttributesAdapter getJsonAdapter() {
    class DatasetAttributesAdapter (line 436) | public static class DatasetAttributesAdapter implements JsonSerializer...
      method deserialize (line 438) | @Override public DatasetAttributes deserialize(JsonElement json, Typ...
      method serialize (line 482) | @Override public JsonElement serialize(DatasetAttributes src, Type t...
      method getCompressionVersion0 (line 499) | private static Compression getCompressionVersion0(final String compr...

FILE: src/main/java/org/janelia/saalfeldlab/n5/DoubleArrayDataBlock.java
  class DoubleArrayDataBlock (line 3) | public class DoubleArrayDataBlock extends AbstractDataBlock<double[]> {
    method DoubleArrayDataBlock (line 5) | public DoubleArrayDataBlock(final int[] size, final long[] gridPositio...

FILE: src/main/java/org/janelia/saalfeldlab/n5/FileKeyLockManager.java
  class FileKeyLockManager (line 19) | class FileKeyLockManager {
    method forPolicy (line 23) | static FileKeyLockManager forPolicy(final LockingPolicy policy) {
    method FileKeyLockManager (line 50) | private FileKeyLockManager(final LockingPolicy policy) {
    class WeakValue (line 58) | private static class WeakValue extends WeakReference<KeyLockState> {
      method WeakValue (line 62) | WeakValue(
    method cleanUp (line 76) | private void cleanUp()
    method keyLockState (line 86) | private KeyLockState keyLockState(final Path path, final LockingPolicy...
    method lockForReading (line 124) | public LockedFileChannel lockForReading(final Path path) throws IOExce...
    method lockForWriting (line 141) | public LockedFileChannel lockForWriting(final Path path) throws IOExce...
    method size (line 151) | int size() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/FileSystemKeyValueAccess.java
  class FileSystemKeyValueAccess (line 34) | public class FileSystemKeyValueAccess implements KeyValueAccess {
    method FileSystemKeyValueAccess (line 38) | public FileSystemKeyValueAccess() {
    method lockForReading (line 43) | private LockedFileChannel lockForReading(final Path path) throws N5IOE...
    method lockForWriting (line 54) | private LockedFileChannel lockForWriting(final Path path) throws N5IOE...
    method createReadData (line 65) | @Override
    method write (line 70) | @Override
    method isDirectory (line 80) | @Override
    method isFile (line 87) | @Override
    method exists (line 94) | @Override
    method size (line 101) | @Override
    method size (line 107) | private static long size(final Path path) {
    method listDirectories (line 118) | @Override
    method list (line 134) | @Override
    method components (line 149) | @Override
    method parent (line 178) | @Override
    method relativize (line 188) | @Override
    method normalize (line 204) | @Override
    method uri (line 210) | @Override
    method compose (line 224) | @Override
    method compose (line 234) | @Override
    method createDirectories (line 251) | @Override
    method delete (line 263) | @Override
    method tryDelete (line 293) | protected static void tryDelete(final Path path) throws IOException {
    method createDirectories (line 373) | protected static Path createDirectories(Path dir, final FileAttribute<...
    method createAndCheckIsDirectory (line 437) | protected static void createAndCheckIsDirectory(
    method validBounds (line 455) | private static void validBounds(final long channelSize, final long off...
    class FileLazyRead (line 465) | private class FileLazyRead implements LazyRead {
      method FileLazyRead (line 470) | FileLazyRead(final Path path) {
      method size (line 475) | @Override
      method materialize (line 491) | @Override
      method close (line 515) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/FloatArrayDataBlock.java
  class FloatArrayDataBlock (line 3) | public class FloatArrayDataBlock extends AbstractDataBlock<float[]> {
    method FloatArrayDataBlock (line 5) | public FloatArrayDataBlock(final int[] size, final long[] gridPosition...

FILE: src/main/java/org/janelia/saalfeldlab/n5/FsIoPolicy.java
  class FsIoPolicy (line 18) | public class FsIoPolicy {
    method validBounds (line 22) | private static boolean validBounds(long channelSize, long offset, long...
    method openFileChannel (line 41) | static FileChannel openFileChannel(final Path path, final boolean forW...
    method writeToPathIgnoreCloseException (line 64) | private static void writeToPathIgnoreCloseException(ReadData readData,...
    class Unsafe (line 88) | public static class Unsafe implements IoPolicy {
      method write (line 89) | @Override
      method read (line 95) | @Override
      method delete (line 102) | @Override
    class Atomic (line 109) | public static class Atomic implements IoPolicy {
      method write (line 110) | @Override
      method read (line 118) | @Override
      method delete (line 125) | @Override
    class FileLazyRead (line 136) | static class FileLazyRead implements LazyRead {
      method FileLazyRead (line 143) | FileLazyRead(final Path path) throws IOException {
      method FileLazyRead (line 147) | FileLazyRead(final Path path, final boolean requireLock ) throws IOE...
      method size (line 155) | @Override
      method materialize (line 171) | @Override
      method close (line 211) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/GsonKeyValueN5Reader.java
  type GsonKeyValueN5Reader (line 19) | public interface GsonKeyValueN5Reader extends GsonN5Reader {
    method getKeyValueAccess (line 21) | KeyValueAccess getKeyValueAccess();
    method groupExists (line 23) | default boolean groupExists(final String normalPath) {
    method exists (line 28) | @Override
    method datasetExists (line 35) | @Override
    method getAttributes (line 50) | @Override
    method readChunk (line 68) | @Override
    method readChunks (line 85) | @Override
    method readBlock (line 96) | @Override
    method list (line 114) | @Override
    method absoluteGroupPath (line 128) | default String absoluteGroupPath(final String normalGroupPath) {
    method absoluteAttributesPath (line 141) | default String absoluteAttributesPath(final String normalPath) {
    method blockExists (line 146) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/GsonKeyValueN5Writer.java
  type GsonKeyValueN5Writer (line 26) | public interface GsonKeyValueN5Writer extends GsonN5Writer, GsonKeyValue...
    method setVersion (line 35) | default void setVersion(final String path) {
    method initializeContainer (line 41) | static String initializeContainer(
    method createGroup (line 50) | @Override
    method writeAttributes (line 70) | default void writeAttributes(
    method setAttributes (line 86) | @Override
    method writeAttributes (line 114) | default void writeAttributes(
    method setAttributes (line 128) | @Override
    method removeAttribute (line 140) | @Override
    method removeAttribute (line 163) | @Override
    method removeAttributes (line 182) | @Override
    method writeRegion (line 194) | @Override
    method writeRegion (line 212) | @Override
    method writeChunks (line 231) | @Override
    method writeChunk (line 247) | @Override
    method writeBlock (line 264) | @Override
    method remove (line 282) | @Override
    method deleteBlock (line 294) | @Override
    method deleteChunk (line 304) | @Override
    method deleteChunks (line 314) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/GsonN5Reader.java
  type GsonN5Reader (line 17) | public interface GsonN5Reader extends N5Reader {
    method getGson (line 19) | Gson getGson();
    method getAttributesKey (line 27) | String getAttributesKey();
    method listAttributes (line 29) | @Override
    method getDatasetAttributes (line 35) | @Override
    method createDatasetAttributes (line 43) | default DatasetAttributes createDatasetAttributes(final JsonElement at...
    method getAttribute (line 56) | @Override
    method getAttribute (line 70) | @Override
    method getAttributes (line 91) | JsonElement getAttributes(final String pathName) throws N5Exception;

FILE: src/main/java/org/janelia/saalfeldlab/n5/GsonN5Writer.java
  type GsonN5Writer (line 10) | public interface GsonN5Writer extends GsonN5Reader, N5Writer {
    method setAttributes (line 22) | void setAttributes(

FILE: src/main/java/org/janelia/saalfeldlab/n5/GsonUtils.java
  type GsonUtils (line 26) | public interface GsonUtils {
    method readAttributes (line 37) | static JsonElement readAttributes(final Reader reader, final Gson gson) {
    method readAttribute (line 42) | static <T> T readAttribute(
    method readAttribute (line 51) | static <T> T readAttribute(
    method parseAttributeElement (line 75) | @SuppressWarnings("unchecked")
    method getAttribute (line 127) | static JsonElement getAttribute(JsonElement root, final String normali...
    method listAttributes (line 176) | static Map<String, Class<?>> listAttributes(final JsonElement root) th...
    method getJsonAsArray (line 229) | static <T> T getJsonAsArray(final Gson gson, final JsonArray array, fi...
    method getJsonAsArray (line 234) | @SuppressWarnings("unchecked")
    method classForJsonPrimitive (line 321) | static Class<?> classForJsonPrimitive(final JsonPrimitive jsonPrimitiv...
    method removeAttribute (line 365) | static <T> T removeAttribute(
    method removeAttribute (line 393) | static boolean removeAttribute(
    method removeAttribute (line 429) | static <T> T removeAttribute(
    method removeAttribute (line 453) | static JsonElement removeAttribute(JsonElement root, final String norm...
    method writeAttribute (line 511) | static <T> void writeAttribute(
    method writeAttributes (line 537) | static <T> void writeAttributes(
    method insertAttributes (line 546) | static JsonElement insertAttributes(JsonElement root, final Map<String...
    method insertAttribute (line 554) | static <T> JsonElement insertAttribute(

FILE: src/main/java/org/janelia/saalfeldlab/n5/GzipCompression.java
  class GzipCompression (line 16) | @CompressionType("gzip")
    method GzipCompression (line 44) | public GzipCompression() {
    method GzipCompression (line 49) | public GzipCompression(final int level) {
    method GzipCompression (line 54) | public GzipCompression(final int level, final boolean useZlib) {
    method equals (line 60) | @Override
    method decode (line 71) | private InputStream decode(final InputStream in) throws IOException {
    method decode (line 82) | @Override
    method encode (line 92) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/HttpKeyValueAccess.java
  class HttpKeyValueAccess (line 35) | public class HttpKeyValueAccess implements KeyValueAccess {
    method HttpKeyValueAccess (line 55) | public HttpKeyValueAccess() {
    method setReadTimeout (line 61) | public void setReadTimeout(int readTimeoutMilliseconds) {
    method setConnectionTimeout (line 66) | public void setConnectionTimeout(int connectionTimeoutMilliseconds) {
    method setListParser (line 71) | public void setListParser(final ListResponseParser parser) {
    method setListDirectoryParser (line 76) | public void setListDirectoryParser(final ListResponseParser parser) {
    method normalize (line 81) | @Override
    method uri (line 87) | @Override
    method exists (line 103) | @Override
    method size (line 114) | @Override public long size(String normalPath) {
    method isDirectory (line 131) | @Override
    method getDirectoryPath (line 151) | private static String getDirectoryPath(String normalPath) {
    method isFile (line 172) | @Override
    method getFilePath (line 192) | private static String getFilePath(String normalPath) {
    method httpRequest (line 198) | private HttpURLConnection httpRequest(String normalPath, String method...
    method createReadData (line 208) | @Override
    method lockForReading (line 213) | public LockedChannel lockForReading(final String normalPath) throws N5...
    method lockForWriting (line 224) | @Override
    method write (line 230) | @Override
    method listDirectories (line 248) | @Override
    method list (line 267) | @Override
    method queryListEntries (line 273) | private String[] queryListEntries(String normalPath, ListResponseParse...
    method validExistsResponse (line 284) | private static N5Exception validExistsResponse(int code, String respon...
    method requireValidHttpResponse (line 294) | private HttpURLConnection requireValidHttpResponse(String uri, String ...
    method requireValidHttpResponse (line 298) | private HttpURLConnection requireValidHttpResponse(String uri, String ...
    method requireValidHttpResponse (line 302) | private HttpURLConnection requireValidHttpResponse(String uri, String ...
    method responseToString (line 321) | private String responseToString(InputStream inputStream) throws IOExce...
    method createDirectories (line 326) | @Override
    method delete (line 332) | @Override
    class HttpObjectChannel (line 338) | private class HttpObjectChannel implements LockedChannel {
      method HttpObjectChannel (line 345) | protected HttpObjectChannel(final URI uri, long startByte, long size) {
      method isPartialRead (line 352) | private boolean isPartialRead() {
      method newInputStream (line 356) | @Override
      method rangeString (line 379) | private String rangeString() {
      method newReader (line 385) | @Override
      method newOutputStream (line 395) | @Override
      method newWriter (line 401) | @Override
      method close (line 407) | @Override
    class HttpLazyRead (line 419) | private class HttpLazyRead implements LazyRead {
      method HttpLazyRead (line 423) | HttpLazyRead(String normalKey) {
      method size (line 427) | @Override
      method materialize (line 432) | @Override
      method close (line 443) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/IntArrayDataBlock.java
  class IntArrayDataBlock (line 3) | public class IntArrayDataBlock extends AbstractDataBlock<int[]> {
    method IntArrayDataBlock (line 5) | public IntArrayDataBlock(final int[] size, final long[] gridPosition, ...

FILE: src/main/java/org/janelia/saalfeldlab/n5/IoPolicy.java
  type IoPolicy (line 8) | public interface IoPolicy {
    method write (line 10) | void write(String key, ReadData readData) throws IOException;
    method read (line 12) | VolatileReadData read(String key) throws IOException;
    method delete (line 14) | void delete(String key) throws IOException;
    method withFallback (line 16) | static IoPolicy withFallback(IoPolicy primary, IoPolicy fallback) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/KeyLockState.java
  class KeyLockState (line 12) | class KeyLockState {
    method KeyLockState (line 18) | public KeyLockState(final Path path, LockingPolicy policy) {
    method acquireRead (line 45) | LockedFileChannel acquireRead() throws IOException {
    method releaseRead (line 78) | void releaseRead() throws IOException {
    method releaseChannelLock (line 96) | private void releaseChannelLock() throws IOException {
    method acquireWrite (line 105) | LockedFileChannel acquireWrite() throws IOException {
    method releaseWrite (line 127) | void releaseWrite() throws IOException {

FILE: src/main/java/org/janelia/saalfeldlab/n5/KeyValueAccess.java
  type KeyValueAccess (line 22) | public interface KeyValueAccess {
    method components (line 31) | default String[] components( final String path ) {
    method compose (line 59) | default String compose( final URI uri, final String... components ) {
    method compose (line 97) | @Deprecated
    method parent (line 115) | default String parent( final String path ) {
    method relativize (line 129) | default String relativize( final String path, final String base ) {
    method normalize (line 155) | String normalize( final String path );
    method uri (line 166) | default URI uri(final String uriString) throws URISyntaxException {
    method exists (line 181) | boolean exists( final String normalPath );
    method size (line 192) | long size( final String normalPath ) throws N5Exception.N5NoSuchKeyExc...
    method isDirectory (line 202) | boolean isDirectory( String normalPath );
    method isFile (line 212) | boolean isFile( String normalPath );
    method createReadData (line 237) | VolatileReadData createReadData(final String normalPath) throws N5IOEx...
    method write (line 252) | void write(String normalPath, ReadData data) throws N5IOException;
    method lockForReading (line 271) | @Deprecated
    method lockForWriting (line 294) | @Deprecated
    method listDirectories (line 309) | String[] listDirectories( final String normalPath ) throws N5IOException;
    method list (line 320) | String[] list( final String normalPath ) throws N5IOException;
    method createDirectories (line 334) | void createDirectories( final String normalPath ) throws N5IOException;
    method delete (line 345) | void delete( final String normalPath ) throws N5IOException;

FILE: src/main/java/org/janelia/saalfeldlab/n5/LinkedAttributePathToken.java
  class LinkedAttributePathToken (line 12) | public abstract class LinkedAttributePathToken<T extends JsonElement> im...
    method getJsonType (line 27) | public abstract T getJsonType();
    method getOrCreateChildElement (line 42) | public abstract JsonElement getOrCreateChildElement();
    method writeChild (line 62) | public JsonElement writeChild(final Gson gson, final Object value) {
    method jsonCompatible (line 90) | @SuppressWarnings("BooleanMethodIsAlwaysInverted")
    method writeValue (line 107) | protected abstract void writeValue(Gson gson, Object value);
    method writeChildElement (line 113) | protected abstract void writeChildElement();
    method getChildElement (line 119) | protected abstract JsonElement getChildElement();
    method setAndCreateParentElement (line 133) | @SuppressWarnings("unchecked")
    method hasNext (line 149) | @Override
    method next (line 158) | @Override
    class ObjectAttributeToken (line 164) | public static class ObjectAttributeToken extends LinkedAttributePathTo...
      method ObjectAttributeToken (line 170) | public ObjectAttributeToken(final String key) {
      method getKey (line 179) | public String getKey() {
      method toString (line 184) | @Override
      method getJsonType (line 190) | @Override
      method getOrCreateChildElement (line 196) | @Override
      method getChildElement (line 206) | @Override
      method writeValue (line 212) | @Override
      method writeChildElement (line 218) | @Override
    class ArrayAttributeToken (line 228) | public static class ArrayAttributeToken extends LinkedAttributePathTok...
      method ArrayAttributeToken (line 234) | public ArrayAttributeToken(final int index) {
      method getIndex (line 243) | public int getIndex() {
      method toString (line 248) | @Override
      method getJsonType (line 254) | @Override
      method getOrCreateChildElement (line 260) | @Override
      method writeChildElement (line 269) | @Override
      method getChildElement (line 278) | @Override
      method writeValue (line 284) | @Override
      method fillArrayToIndex (line 303) | private static void fillArrayToIndex(final JsonArray array, final in...
      method valueRepresentsANumber (line 330) | private static boolean valueRepresentsANumber(final Object value) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/LockedChannel.java
  type LockedChannel (line 17) | public interface LockedChannel extends Closeable {
    method newReader (line 26) | Reader newReader() throws N5IOException;
    method newInputStream (line 35) | InputStream newInputStream() throws N5IOException;
    method newWriter (line 44) | Writer newWriter() throws N5IOException;
    method newOutputStream (line 53) | OutputStream newOutputStream() throws N5IOException;

FILE: src/main/java/org/janelia/saalfeldlab/n5/LockedFileChannel.java
  class LockedFileChannel (line 20) | class LockedFileChannel implements Closeable {
    type ReleaseLock (line 30) | @FunctionalInterface
      method release (line 33) | void release() throws IOException;
    method LockedFileChannel (line 36) | LockedFileChannel(final FileChannel channel, final ReleaseLock release...
    method size (line 47) | public long size() throws IOException {
    method read (line 57) | public int read(final ByteBuffer dst, final long position) throws IOEx...
    method asOutputStream (line 65) | public OutputStream asOutputStream() {
    class ClosingChannelWrapper (line 71) | private class ClosingChannelWrapper implements WritableByteChannel {
      method write (line 73) | @Override
      method isOpen (line 86) | @Override
      method close (line 91) | @Override
    method close (line 98) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/LockingPolicy.java
  type LockingPolicy (line 24) | public enum LockingPolicy {
    method fromString (line 44) | static LockingPolicy fromString(final String s) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/LongArrayDataBlock.java
  class LongArrayDataBlock (line 3) | public class LongArrayDataBlock extends AbstractDataBlock<long[]> {
    method LongArrayDataBlock (line 5) | public LongArrayDataBlock(final int[] size, final long[] gridPosition,...

FILE: src/main/java/org/janelia/saalfeldlab/n5/Lz4Compression.java
  class Lz4Compression (line 9) | @CompressionType("lz4")
    method Lz4Compression (line 19) | public Lz4Compression(final int blockSize) {
    method Lz4Compression (line 24) | public Lz4Compression() {
    method equals (line 29) | @Override
    method decode (line 38) | @Override
    method encode (line 44) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5Exception.java
  class N5Exception (line 3) | public class N5Exception extends RuntimeException {
    method N5Exception (line 5) | public N5Exception() {
    method N5Exception (line 10) | public N5Exception(final String message) {
    method N5Exception (line 15) | public N5Exception(final String message, final Throwable cause) {
    method N5Exception (line 20) | public N5Exception(final Throwable cause) {
    method N5Exception (line 25) | protected N5Exception(
    class N5IOException (line 34) | public static class N5IOException extends N5Exception{
      method N5IOException (line 36) | public N5IOException(final String message) {
      method N5IOException (line 41) | public N5IOException(final String message, final Throwable cause) {
      method N5IOException (line 46) | public N5IOException(final Throwable cause) {
      method N5IOException (line 51) | protected N5IOException(
    class N5ClassCastException (line 65) | public static class N5ClassCastException extends N5Exception {
      method N5ClassCastException (line 68) | public N5ClassCastException(final Class<?> cls) {
      method N5ClassCastException (line 73) | public N5ClassCastException(final String message) {
      method N5ClassCastException (line 78) | public N5ClassCastException(final String message, final Throwable ca...
      method N5ClassCastException (line 83) | public N5ClassCastException(final Throwable cause) {
      method N5ClassCastException (line 88) | protected N5ClassCastException(
    class N5NoSuchKeyException (line 98) | public static class N5NoSuchKeyException extends N5IOException {
      method N5NoSuchKeyException (line 100) | public N5NoSuchKeyException(final String message) {
      method N5NoSuchKeyException (line 105) | public N5NoSuchKeyException(final String message, final Throwable ca...
      method N5NoSuchKeyException (line 110) | public N5NoSuchKeyException(final Throwable cause) {
      method N5NoSuchKeyException (line 115) | protected N5NoSuchKeyException(
    class N5JsonParseException (line 128) | public static class N5JsonParseException extends N5Exception {
      method N5JsonParseException (line 129) | public N5JsonParseException(final String message) {
      method N5JsonParseException (line 134) | public N5JsonParseException(final String message, final Throwable ca...
      method N5JsonParseException (line 139) | public N5JsonParseException(final Throwable cause) {
      method N5JsonParseException (line 144) | protected N5JsonParseException(
    class N5ConcurrentModificationException (line 155) | public static class N5ConcurrentModificationException extends N5IOExce...
      method N5ConcurrentModificationException (line 157) | public N5ConcurrentModificationException(final String message) {
      method N5ConcurrentModificationException (line 162) | public N5ConcurrentModificationException(final String message, final...
      method N5ConcurrentModificationException (line 167) | public N5ConcurrentModificationException(final Throwable cause) {
      method N5ConcurrentModificationException (line 172) | protected N5ConcurrentModificationException(

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5FSReader.java
  class N5FSReader (line 17) | public class N5FSReader extends N5KeyValueReader {
    method N5FSReader (line 40) | public N5FSReader(final String basePath, final GsonBuilder gsonBuilder...
    method N5FSReader (line 71) | public N5FSReader(final String basePath, final boolean cacheMeta) thro...
    method N5FSReader (line 89) | public N5FSReader(final String basePath, final GsonBuilder gsonBuilder...
    method N5FSReader (line 104) | public N5FSReader(final String basePath) throws N5Exception {

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5FSWriter.java
  class N5FSWriter (line 12) | public class N5FSWriter extends N5KeyValueWriter {
    method N5FSWriter (line 41) | public N5FSWriter(final String basePath, final GsonBuilder gsonBuilder...
    method N5FSWriter (line 75) | public N5FSWriter(final String basePath, final boolean cacheAttributes...
    method N5FSWriter (line 102) | public N5FSWriter(final String basePath, final GsonBuilder gsonBuilder...
    method N5FSWriter (line 126) | public N5FSWriter(final String basePath) throws N5Exception {

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5KeyValueReader.java
  class N5KeyValueReader (line 20) | public class N5KeyValueReader implements CachedGsonKeyValueN5Reader {
    method N5KeyValueReader (line 55) | public N5KeyValueReader(
    method N5KeyValueReader (line 92) | protected N5KeyValueReader(
    method inferExistence (line 132) | private boolean inferExistence(String path) {
    method registerGson (line 138) | protected GsonBuilder registerGson(final GsonBuilder gsonBuilder) {
    method getAttributesKey (line 147) | @Override
    method getGson (line 153) | @Override
    method getKeyValueAccess (line 159) | @Override
    method getURI (line 165) | @Override
    method cacheMeta (line 171) | @Override
    method getCache (line 177) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5KeyValueWriter.java
  class N5KeyValueWriter (line 10) | public class N5KeyValueWriter extends N5KeyValueReader implements Cached...
    method N5KeyValueWriter (line 39) | public N5KeyValueWriter(

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5Reader.java
  type N5Reader (line 29) | public interface N5Reader extends AutoCloseable {
    class Version (line 31) | class Version {
      method Version (line 38) | public Version(
      method Version (line 50) | public Version(
      method Version (line 68) | public Version(final String versionString) {
      method getMajor (line 101) | public final int getMajor() {
      method getMinor (line 106) | public final int getMinor() {
      method getPatch (line 111) | public final int getPatch() {
      method getSuffix (line 116) | public final String getSuffix() {
      method toString (line 121) | @Override
      method equals (line 135) | @Override
      method isCompatible (line 159) | public boolean isCompatible(final Version version) {
    method getVersion (line 193) | default Version getVersion() throws N5Exception {
    method getURI (line 203) | URI getURI();
    method getAttribute (line 220) | <T> T getAttribute(
    method getAttribute (line 240) | <T> T getAttribute(
    method getDatasetAttributes (line 255) | DatasetAttributes getDatasetAttributes(String pathName) throws N5Excep...
    method getConvertedDatasetAttributes (line 268) | default DatasetAttributes getConvertedDatasetAttributes(final DatasetA...
    method readChunk (line 288) | <T> DataBlock<T> readChunk(
    method readChunks (line 311) | default <T> List<DataBlock<T>> readChunks(
    method readBlock (line 344) | <T> DataBlock<T> readBlock(
    method blockExists (line 370) | boolean blockExists(
    method readSerializedBlock (line 394) | default <T> T readSerializedBlock(
    method exists (line 419) | boolean exists(String pathName);
    method datasetExists (line 430) | default boolean datasetExists(final String pathName) throws N5Exception {
    method list (line 444) | String[] list(String pathName) throws N5Exception;
    method deepList (line 460) | default String[] deepList(
    method deepList (line 487) | default String[] deepList(final String pathName) throws N5Exception {
    method deepListDatasets (line 523) | default String[] deepListDatasets(
    method deepListDatasets (line 572) | default String[] deepListDatasets(final String pathName) throws N5Exce...
    method deepList (line 592) | static ArrayList<String> deepList(
    method deepList (line 636) | default String[] deepList(
    method deepList (line 672) | default String[] deepList(
    method deepListDatasets (line 722) | default String[] deepListDatasets(
    method deepListDatasets (line 781) | default String[] deepListDatasets(
    method deepListHelper (line 808) | static void deepListHelper(
    method listAttributes (line 848) | Map<String, Class<?>> listAttributes(String pathName) throws N5Exception;
    method getGroupSeparator (line 855) | default String getGroupSeparator() {
    method groupPath (line 868) | default String groupPath(final String... nodes) {
    method close (line 889) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5URI.java
  class N5URI (line 27) | public class N5URI {
    method N5URI (line 37) | public N5URI(final String uri) throws URISyntaxException {
    method N5URI (line 42) | public N5URI(final URI uri) {
    method getContainerPath (line 59) | public String getContainerPath() {
    method getURI (line 64) | public URI getURI() {
    method getGroupPath (line 71) | public String getGroupPath() {
    method normalizeGroupPath (line 79) | public String normalizeGroupPath() {
    method getAttributePath (line 87) | public String getAttributePath() {
    method normalizeAttributePath (line 95) | public String normalizeAttributePath() {
    method getAttributePathTokens (line 106) | public LinkedAttributePathToken<?> getAttributePathTokens() {
    method getAttributePathTokens (line 123) | public static LinkedAttributePathToken<?> getAttributePathTokens(final...
    method getSchemePart (line 159) | private String getSchemePart() {
    method getContainerPart (line 164) | private String getContainerPart() {
    method getGroupPart (line 169) | private String getGroupPart() {
    method getAttributePart (line 174) | private String getAttributePart() {
    method toString (line 179) | @Override
    method getSchemeSpecificPartWithoutQuery (line 185) | private String getSchemeSpecificPartWithoutQuery() {
    method isAbsolute (line 198) | public boolean isAbsolute() {
    method resolve (line 222) | public N5URI resolve(final N5URI relativeN5Url) throws URISyntaxExcept...
    method resolve (line 303) | public N5URI resolve(final URI relativeUri) throws URISyntaxException {
    method resolve (line 320) | public N5URI resolve(final String relativeString) throws URISyntaxExce...
    method normalizePath (line 337) | private static String normalizePath(String path) {
    method normalizeGroupPath (line 415) | public static String normalizeGroupPath(final String path) {
    type N5UriPattern (line 430) | private enum N5UriPattern {
      method N5UriPattern (line 475) | N5UriPattern(Pattern pattern) {
      method matches (line 479) | boolean matches(final String input) {
      method replaceAll (line 483) | String replaceAll(final String input, final String replacement) {
      method appendSlashAfterArrayStart (line 487) | static String appendSlashAfterArrayStart(final String input) {
      method addSlashAroundArrayExceptStart (line 491) | static String addSlashAroundArrayExceptStart(final String input) {
      method removeRelativePathParts (line 495) | static String removeRelativePathParts(final String path) {
    method normalizeAttributePath (line 549) | public static String normalizeAttributePath(final String attributePath) {
    method getAsUri (line 577) | public static URI getAsUri(final String uri) throws N5Exception {
    method encodeAsUriPath (line 590) | public static URI encodeAsUriPath(final String path) {
    method encodeAsUri (line 608) | public static URI encodeAsUri(final String uri) throws URISyntaxExcept...
    method from (line 663) | public static N5URI from(
    method decode (line 679) | @SuppressWarnings("JavadocReference")
    method decode (line 697) | @SuppressWarnings("JavadocReference")
    method decodeFragment (line 720) | @SuppressWarnings("JavadocReference")

FILE: src/main/java/org/janelia/saalfeldlab/n5/N5Writer.java
  type N5Writer (line 23) | public interface N5Writer extends N5Reader {
    method setAttribute (line 34) | default <T> void setAttribute(
    method setAttributes (line 52) | void setAttributes(
    method removeAttribute (line 64) | boolean removeAttribute(String groupPath, String attributePath) throws...
    method removeAttribute (line 81) | <T> T removeAttribute(String groupPath, String attributePath, Class<T>...
    method removeAttributes (line 96) | default boolean removeAttributes(final String groupPath, final List<St...
    method setDatasetAttributes (line 113) | default void setDatasetAttributes(
    method setVersion (line 128) | default void setVersion() throws N5Exception {
    method createGroup (line 140) | void createGroup(String groupPath) throws N5Exception;
    method remove (line 158) | boolean remove(String groupPath) throws N5Exception;
    method remove (line 166) | default boolean remove() throws N5Exception {
    method createDataset (line 182) | default DatasetAttributes createDataset(
    method createDataset (line 206) | default DatasetAttributes createDataset(
    method writeChunk (line 225) | <T> void writeChunk(
    method writeChunks (line 239) | default <T> void writeChunks(
    method writeBlock (line 267) | <T> void writeBlock(
    type DataBlockSupplier (line 272) | @FunctionalInterface
      method get (line 283) | DataBlock<T> get(long[] gridPos, DataBlock<T> existingDataBlock);
    method writeRegion (line 295) | <T> void writeRegion(
    method writeRegion (line 313) | <T> void writeRegion(
    method deleteBlock (line 338) | default boolean deleteBlock(
    method deleteBlock (line 362) | boolean deleteBlock(
    method deleteChunk (line 378) | default boolean deleteChunk(
    method deleteChunk (line 397) | boolean deleteChunk(
    method deleteChunks (line 412) | default boolean deleteChunks(
    method writeSerializedBlock (line 433) | default void writeSerializedBlock(

FILE: src/main/java/org/janelia/saalfeldlab/n5/NameConfigAdapter.java
  class NameConfigAdapter (line 33) | public class NameConfigAdapter<T> implements JsonDeserializer<T>, JsonSe...
    method registerAdapter (line 37) | private static <V> void registerAdapter(Class<V> cls) {
    method getDeclaredFields (line 46) | private static ArrayList<Field> getDeclaredFields(Class<?> clazz) {
    method update (line 55) | @SuppressWarnings("unchecked")
    method NameConfigAdapter (line 108) | public NameConfigAdapter(Class<T> cls) {
    method serialize (line 112) | @Override
    method deserialize (line 156) | @Override
    method reverseJsonArray (line 216) | private static JsonArray reverseJsonArray(JsonElement paramJson) {
    method getJsonAdapter (line 225) | public static <T> NameConfigAdapter<T> getJsonAdapter(Class<T> cls) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/RawCompression.java
  class RawCompression (line 8) | @CompressionType("raw")
    method equals (line 14) | @Override
    method encode (line 20) | @Override
    method decode (line 25) | @Override
    method encodedSize (line 30) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/ReflectionUtils.java
  class ReflectionUtils (line 6) | class ReflectionUtils {
    method setFieldValue (line 8) | static <T> void setFieldValue(

FILE: src/main/java/org/janelia/saalfeldlab/n5/ShortArrayDataBlock.java
  class ShortArrayDataBlock (line 3) | public class ShortArrayDataBlock extends AbstractDataBlock<short[]> {
    method ShortArrayDataBlock (line 5) | public ShortArrayDataBlock(final int[] size, final long[] gridPosition...

FILE: src/main/java/org/janelia/saalfeldlab/n5/StringDataBlock.java
  class StringDataBlock (line 7) | public class StringDataBlock extends AbstractDataBlock<String[]> {
    method StringDataBlock (line 14) | public StringDataBlock(final int[] size, final long[] gridPosition, fi...
    method StringDataBlock (line 19) | public StringDataBlock(final int[] size, final long[] gridPosition, fi...
    method readData (line 24) | public void readData(final ByteBuffer buffer) {
    method serialize (line 34) | protected byte[] serialize(String[] strings) {
    method deserialize (line 39) | protected String[] deserialize(byte[] rawBytes) {
    method getNumElements (line 44) | @Override
    method getData (line 51) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/XzCompression.java
  class XzCompression (line 11) | @CompressionType("xz")
    method XzCompression (line 21) | public XzCompression(final int preset) {
    method XzCompression (line 26) | public XzCompression() {
    method equals (line 31) | @Override
    method decode (line 40) | @Override
    method encode (line 50) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/cache/N5JsonCache.java
  class N5JsonCache (line 18) | public class N5JsonCache {
    class N5CacheInfo (line 30) | protected static class N5CacheInfo {
      method getCache (line 37) | public JsonElement getCache(final String normalCacheKey) {
      method containsKey (line 45) | public boolean containsKey(final String normalCacheKey) {
      method isDataset (line 53) | public boolean isDataset() {
      method isGroup (line 58) | public boolean isGroup() {
    class EmptyJson (line 64) | @SuppressWarnings("deprecation")
      method deepCopy (line 67) | @Override
    method N5JsonCache (line 77) | public N5JsonCache(final N5JsonCacheableContainer container) {
    method getAttributes (line 82) | public JsonElement getAttributes(final String normalPathKey, final Str...
    method isDataset (line 102) | public boolean isDataset(final String normalPathKey, final String norm...
    method isGroup (line 112) | public boolean isGroup(final String normalPathKey, final String cacheK...
    method exists (line 131) | public boolean exists(final String normalPathKey, final String normalC...
    method list (line 141) | public String[] list(final String normalPathKey) {
    method addNewCacheInfo (line 163) | public N5CacheInfo addNewCacheInfo(
    method addNewCacheInfo (line 201) | private N5CacheInfo addNewCacheInfo(final String normalPathKey) {
    method addChild (line 206) | private void addChild(final N5CacheInfo cacheInfo, final String normal...
    method getOrMakeCacheInfo (line 215) | protected N5CacheInfo getOrMakeCacheInfo(final String normalPathKey) {
    method updateCacheInfo (line 237) | public void updateCacheInfo(final String normalPathKey, final String n...
    method updateCacheInfo (line 256) | public void updateCacheInfo(
    method initializeNonemptyCache (line 277) | public void initializeNonemptyCache(final String normalPathKey, final ...
    method setAttributes (line 289) | public void setAttributes(final String normalPathKey, final String nor...
    method addChildIfPresent (line 317) | public void addChildIfPresent(final String parent, final String child) {
    method addChild (line 336) | public void addChild(final String parent, final String child) {
    method removeCache (line 348) | public void removeCache(final String normalParentPathKey, final String...
    method getCacheInfo (line 367) | protected N5CacheInfo getCacheInfo(final String pathKey) {
    method newCacheInfo (line 374) | protected N5CacheInfo newCacheInfo() {
    method updateCache (line 379) | protected void updateCache(final String normalPathKey, final N5CacheIn...
    method updateCacheAttributes (line 386) | protected void updateCacheAttributes(
    method updateCacheIsGroup (line 396) | protected void updateCacheIsGroup(final N5CacheInfo cacheInfo, final b...
    method updateCacheIsDataset (line 401) | protected void updateCacheIsDataset(final N5CacheInfo cacheInfo, final...

FILE: src/main/java/org/janelia/saalfeldlab/n5/cache/N5JsonCacheableContainer.java
  type N5JsonCacheableContainer (line 17) | public interface N5JsonCacheableContainer {
    method getAttributesFromContainer (line 30) | JsonElement getAttributesFromContainer(final String normalPathName, fi...
    method existsFromContainer (line 41) | boolean existsFromContainer(final String normalPathName, final String ...
    method isGroupFromContainer (line 50) | boolean isGroupFromContainer(final String normalPathName);
    method isDatasetFromContainer (line 60) | boolean isDatasetFromContainer(final String normalPathName);
    method isGroupFromAttributes (line 75) | boolean isGroupFromAttributes(final String normalCacheKey, final JsonE...
    method isDatasetFromAttributes (line 89) | boolean isDatasetFromAttributes(final String normalCacheKey, final Jso...
    method listFromContainer (line 99) | String[] listFromContainer(final String normalPathName);

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/BlockCodec.java
  type BlockCodec (line 13) | public interface BlockCodec<T> {
    method encode (line 33) | ReadData encode(DataBlock<T> dataBlock) throws N5IOException;
    method decode (line 54) | DataBlock<T> decode(ReadData readData, long[] gridPosition) throws N5I...
    method encodedSize (line 73) | default long encodedSize(int[] blockSize) throws UnsupportedOperationE...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/BlockCodecInfo.java
  type BlockCodecInfo (line 14) | public interface BlockCodecInfo extends CodecInfo, DeterministicSizeCode...
    method getKeyPositionForBlock (line 16) | default long[] getKeyPositionForBlock(final DatasetAttributes attribut...
    method getKeyPositionForBlock (line 21) | default long[] getKeyPositionForBlock(final DatasetAttributes attribut...
    method encodedSize (line 26) | @Override default long encodedSize(long size) {
    method decodedSize (line 31) | @Override default long decodedSize(long size) {
    method create (line 36) | <T> BlockCodec<T> create(DataType dataType, int[] blockSize, DataCodec...
    method create (line 38) | default <T> BlockCodec<T> create(final DatasetAttributes attributes, f...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/CodecInfo.java
  type CodecInfo (line 12) | @NameConfig.Prefix("codec")
    method getType (line 15) | String getType();

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/CodecParser.java
  class CodecParser (line 8) | public class CodecParser {
    method CodecParser (line 14) | public CodecParser(CodecInfo[] codecs) {
    method parse (line 19) | private void parse(CodecInfo[] codecs) {
    method concatenateCodecs (line 54) | private static CodecInfo[] concatenateCodecs(DatasetAttributes attribu...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/ConcatenatedDataCodec.java
  class ConcatenatedDataCodec (line 5) | class ConcatenatedDataCodec implements DataCodec {
    method ConcatenatedDataCodec (line 9) | ConcatenatedDataCodec(final DataCodec[] codecs) {
    method encode (line 17) | @Override
    method decode (line 26) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/ConcatenatedDeterministicSizeDataCodec.java
  class ConcatenatedDeterministicSizeDataCodec (line 3) | class ConcatenatedDeterministicSizeDataCodec extends ConcatenatedDataCod...
    method ConcatenatedDeterministicSizeDataCodec (line 7) | ConcatenatedDeterministicSizeDataCodec(final DeterministicSizeDataCode...
    method encodedSize (line 13) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DataCodec.java
  type DataCodec (line 11) | public interface DataCodec {
    method decode (line 28) | ReadData decode(ReadData readData) throws N5IOException;
    method encode (line 44) | ReadData encode(ReadData readData) throws N5IOException;
    method concatenate (line 57) | static DataCodec concatenate(final DataCodec... codecs) {
    method create (line 71) | static DataCodec create(final DataCodecInfo... codecInfos) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DataCodecInfo.java
  type DataCodecInfo (line 10) | @NameConfig.Prefix("data-codec")
    method create (line 13) | DataCodec create();

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DatasetCodec.java
  type DatasetCodec (line 15) | public interface DatasetCodec<S, T> {
    method encode (line 21) | DataBlock<T> encode(DataBlock<S> block) throws N5IOException;
    method decode (line 23) | DataBlock<S> decode(DataBlock<T> dataBlock) throws N5IOException;
    method concatenate (line 40) | static <S, T> BlockCodec<S> concatenate(final DatasetCodec<S, T> datas...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DatasetCodecInfo.java
  type DatasetCodecInfo (line 12) | @NameConfig.Prefix("data-codec") // TODO: is this Prefix correct?
    method create (line 15) | DatasetCodec<?, ?> create(final DatasetAttributes attributes);

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DeterministicSizeCodecInfo.java
  type DeterministicSizeCodecInfo (line 8) | public interface DeterministicSizeCodecInfo extends CodecInfo {
    method encodedSize (line 10) | long encodedSize(long size);
    method decodedSize (line 12) | long decodedSize(long size);

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/DeterministicSizeDataCodec.java
  type DeterministicSizeDataCodec (line 7) | public interface DeterministicSizeDataCodec extends DataCodec {
    method encodedSize (line 16) | long encodedSize(long size);
    method concatenate (line 27) | static DeterministicSizeDataCodec concatenate(final DeterministicSizeD...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/FlatArrayCodec.java
  class FlatArrayCodec (line 28) | public abstract class FlatArrayCodec<T> {
    method encode (line 30) | public abstract ReadData encode(T data) throws N5IOException;
    method decode (line 32) | public abstract T decode(ReadData readData, int numElements) throws N5...
    method bytesPerElement (line 34) | public int bytesPerElement() {
    method newArray (line 38) | public T newArray(final int numElements) {
    method SHORT (line 62) | public static FlatArrayCodec<short[]> SHORT(ByteOrder order) {
    method INT (line 66) | public static FlatArrayCodec<int[]> INT(ByteOrder order) {
    method LONG (line 70) | public static FlatArrayCodec<long[]> LONG(ByteOrder order) {
    method FLOAT (line 74) | public static FlatArrayCodec<float[]> FLOAT(ByteOrder order) {
    method DOUBLE (line 78) | public static FlatArrayCodec<double[]> DOUBLE(ByteOrder order) {
    method FlatArrayCodec (line 88) | private FlatArrayCodec(int bytesPerElement, IntFunction<T> dataFactory) {
    class ByteArrayCodec (line 93) | private static final class ByteArrayCodec extends FlatArrayCodec<byte[...
      method ByteArrayCodec (line 95) | private ByteArrayCodec() {
      method encode (line 99) | @Override
      method decode (line 104) | @Override
    class ShortArrayCodec (line 116) | private static final class ShortArrayCodec extends FlatArrayCodec<shor...
      method ShortArrayCodec (line 120) | ShortArrayCodec(ByteOrder order) {
      method encode (line 125) | @Override
      method decode (line 132) | @Override
    class IntArrayCodec (line 140) | private static final class IntArrayCodec extends FlatArrayCodec<int[]> {
      method IntArrayCodec (line 144) | IntArrayCodec(ByteOrder order) {
      method encode (line 149) | @Override
      method decode (line 156) | @Override
    class LongArrayCodec (line 166) | private static final class LongArrayCodec extends FlatArrayCodec<long[...
      method LongArrayCodec (line 170) | LongArrayCodec(ByteOrder order) {
      method encode (line 175) | @Override
      method decode (line 182) | @Override
    class FloatArrayCodec (line 190) | private static final class FloatArrayCodec extends FlatArrayCodec<floa...
      method FloatArrayCodec (line 194) | FloatArrayCodec(ByteOrder order) {
      method encode (line 199) | @Override
      method decode (line 206) | @Override
    class DoubleArrayCodec (line 214) | private static final class DoubleArrayCodec extends FlatArrayCodec<dou...
      method DoubleArrayCodec (line 218) | DoubleArrayCodec(ByteOrder order) {
      method encode (line 223) | @Override
      method decode (line 230) | @Override
    class N5StringArrayCodec (line 238) | private static final class N5StringArrayCodec extends FlatArrayCodec<S...
      method N5StringArrayCodec (line 243) | N5StringArrayCodec() {
      method encode (line 247) | @Override
      method decode (line 253) | @Override
    class ZarrStringArrayCodec (line 261) | private static final class ZarrStringArrayCodec extends FlatArrayCodec...
      method ZarrStringArrayCodec (line 265) | ZarrStringArrayCodec() {
      method encode (line 269) | @Override
      method decode (line 285) | @Override
    class ObjectArrayCodec (line 309) | private static final class ObjectArrayCodec extends FlatArrayCodec<byt...
      method ObjectArrayCodec (line 311) | ObjectArrayCodec() {
      method encode (line 315) | @Override
      method decode (line 320) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/IdentityCodec.java
  class IdentityCodec (line 6) | @NameConfig.Name(IdentityCodec.TYPE)
    method getType (line 13) | @Override
    method decode (line 19) | @Override
    method encode (line 25) | @Override
    method create (line 31) | @Override public DataCodec create() {
    method encodedSize (line 36) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/IndexCodecAdapter.java
  class IndexCodecAdapter (line 3) | public class IndexCodecAdapter {
    method IndexCodecAdapter (line 8) | public IndexCodecAdapter(final BlockCodecInfo blockCodecInfo, final De...
    method getBlockCodecInfo (line 14) | public BlockCodecInfo getBlockCodecInfo() {
    method getDataCodecs (line 19) | public DataCodecInfo[] getDataCodecs() {
    method encodedSize (line 26) | public long encodedSize(long initialSize) {
    method create (line 34) | public static IndexCodecAdapter create(final CodecInfo... codecs) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/N5BlockCodecInfo.java
  class N5BlockCodecInfo (line 8) | @NameConfig.Name(value = N5BlockCodecInfo.TYPE)
    method getKeyPositionForBlock (line 17) | @Override public long[] getKeyPositionForBlock(DatasetAttributes attri...
    method getKeyPositionForBlock (line 22) | @Override public long[] getKeyPositionForBlock(DatasetAttributes attri...
    method encodedSize (line 27) | @Override public long encodedSize(long size) {
    method getType (line 34) | @Override
    method create (line 40) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/N5BlockCodecs.java
  class N5BlockCodecs (line 28) | public class N5BlockCodecs {
    method N5BlockCodecs (line 39) | private N5BlockCodecs() {}
    method create (line 41) | public static <T> BlockCodec<T> create(
    type BlockCodecFactory (line 83) | private interface BlockCodecFactory<T> {
      method create (line 91) | BlockCodec<T> create(DataCodec dataCodec);
    class N5AbstractBlockCodec (line 94) | abstract static class N5AbstractBlockCodec<T> implements BlockCodec<T> {
      method N5AbstractBlockCodec (line 100) | N5AbstractBlockCodec(FlatArrayCodec<T> dataCodec, DataBlockFactory<T...
      method createBlockHeader (line 106) | abstract BlockHeader createBlockHeader(final DataBlock<T> dataBlock,...
      method encode (line 108) | @Override
      method decodeBlockHeader (line 120) | abstract BlockHeader decodeBlockHeader(final InputStream in) throws ...
      method decode (line 122) | @Override
    class DefaultBlockCodec (line 150) | private static class DefaultBlockCodec<T> extends N5AbstractBlockCodec...
      method DefaultBlockCodec (line 152) | DefaultBlockCodec(
      method createBlockHeader (line 160) | @Override
      method decodeBlockHeader (line 166) | @Override
      method encodedSize (line 172) | @Override
    class StringBlockCodec (line 188) | private static class StringBlockCodec extends N5AbstractBlockCodec<Str...
      method StringBlockCodec (line 190) | StringBlockCodec(final DataCodec codec) {
      method createBlockHeader (line 195) | @Override
      method decodeBlockHeader (line 201) | @Override
    class ObjectBlockCodec (line 211) | private static class ObjectBlockCodec extends N5AbstractBlockCodec<byt...
      method ObjectBlockCodec (line 213) | ObjectBlockCodec(final DataCodec codec) {
      method createBlockHeader (line 218) | @Override
      method decodeBlockHeader (line 224) | @Override
    class BlockHeader (line 231) | static class BlockHeader {
      method BlockHeader (line 241) | BlockHeader(final short mode, final int[] blockSize, final int numEl...
      method BlockHeader (line 248) | BlockHeader(final int[] blockSize, final int numElements) {
      method getSize (line 261) | public int getSize() {
      method blockSize (line 266) | public int[] blockSize() {
      method numElements (line 271) | public int numElements() {
      method readBlockSize (line 276) | private static int[] readBlockSize(final DataInputStream dis) throws...
      method writeBlockSize (line 289) | private static void writeBlockSize(final int[] blockSize, final Data...
      method headerSizeInBytes (line 300) | static int headerSizeInBytes(final short mode, final int numDimensio...
      method writeTo (line 319) | void writeTo(final OutputStream out) throws N5IOException {
      method readFrom (line 345) | static BlockHeader readFrom(final InputStream in, short... allowedMo...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/RawBlockCodecInfo.java
  class RawBlockCodecInfo (line 15) | @NameConfig.Name(value = RawBlockCodecInfo.TYPE)
    method RawBlockCodecInfo (line 25) | public RawBlockCodecInfo() {
    method RawBlockCodecInfo (line 30) | public RawBlockCodecInfo(final ByteOrder byteOrder) {
    method getType (line 35) | @Override
    method getByteOrder (line 41) | public ByteOrder getByteOrder() {
    method create (line 45) | @Override
    method ensureValidByteOrder (line 51) | public static void ensureValidByteOrder(final DataType dataType, final...
    class ByteOrderAdapter (line 67) | public static class ByteOrderAdapter implements JsonDeserializer<ByteO...
      method serialize (line 69) | @Override
      method deserialize (line 79) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/RawBlockCodecs.java
  class RawBlockCodecs (line 16) | public class RawBlockCodecs {
    method RawBlockCodecs (line 27) | private RawBlockCodecs() {}
    method create (line 29) | public static <T> BlockCodec<T> create(
    type BlockCodecFactory (line 69) | private interface BlockCodecFactory<T> {
      method create (line 78) | BlockCodec<T> create(ByteOrder byteOrder, int[] blockSize, DataCodec...
    class RawBlockCodec (line 81) | private static class RawBlockCodec<T> implements BlockCodec<T> {
      method RawBlockCodec (line 89) | RawBlockCodec(
      method encode (line 102) | @Override
      method decode (line 111) | @Override
      method encodedSize (line 119) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/checksum/ChecksumCodec.java
  class ChecksumCodec (line 29) | public abstract class ChecksumCodec implements DataCodec, DataCodecInfo,...
    method ChecksumCodec (line 37) | public ChecksumCodec(Supplier<Checksum> checksumSupplier, int numCheck...
    method getChecksum (line 48) | public Checksum getChecksum() {
    method numChecksumBytes (line 53) | public int numChecksumBytes() {
    method createStream (line 58) | private CheckedOutputStream createStream(OutputStream out) {
    method encode (line 74) | @Override public ReadData encode(ReadData readData) {
    method decode (line 79) | @Override public ReadData decode(ReadData readData) throws N5IOExcepti...
    method encodedSize (line 97) | @Override
    method readChecksum (line 103) | protected long readChecksum(ReadData checksumData) {
    method computeChecksum (line 115) | protected long computeChecksum(ReadData data) {
    method getChecksumValue (line 126) | public abstract ByteBuffer getChecksumValue(Checksum checksum);
    method writeChecksum (line 128) | protected void writeChecksum(Checksum checksum, OutputStream out) thro...

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/checksum/ChecksumException.java
  class ChecksumException (line 3) | public class ChecksumException extends Exception {
    method ChecksumException (line 7) | public ChecksumException(final String message) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/checksum/Crc32cChecksumCodec.java
  class Crc32cChecksumCodec (line 11) | @NameConfig.Name(Crc32cChecksumCodec.TYPE)
    method Crc32cChecksumCodec (line 18) | public Crc32cChecksumCodec() {
    method getChecksumValue (line 23) | @Override
    method getType (line 31) | @Override
    method create (line 37) | @Override public DataCodec create() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/transpose/Transpose.java
  class Transpose (line 6) | class Transpose<T> {
    method encode (line 11) | public static int[] encode(final int[] decodedPos, final int[] order) {
    method decode (line 17) | public static int[] decode(final int[] encodedPos, final int[] order) {
    method encode (line 23) | public static void encode(int[] decodedPos, int[] order, int[] encoded...
    method decode (line 28) | public static void decode(int[] encodedPos, int[] order, int[] decoded...
    method of (line 33) | @SuppressWarnings("unchecked")
    method Transpose (line 46) | Transpose(final MemCopy<T> memCopy, final int n) {
    method encode (line 55) | public void encode(final T decoded, final T encoded, final int[] decod...
    method decode (line 78) | public void decode(final T encoded, final T decoded, final int[] decod...
    method copyRecursively (line 98) | private void copyRecursively(final T src, final int srcPos, final T de...
    method newInstance (line 112) | Transpose<T> newInstance() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/transpose/TransposeCodec.java
  class TransposeCodec (line 7) | public class TransposeCodec<T> implements DatasetCodec<T, T> {
    method TransposeCodec (line 14) | public TransposeCodec(final DataType dataType, final int[] order) {
    method encode (line 21) | @Override
    method decode (line 29) | @Override
    method isIdentity (line 37) | public static boolean isIdentity(final int[] permutation) {
    method isReversal (line 46) | public static boolean isReversal(final int[] permutation) {
    method invertPermutation (line 55) | public static int[] invertPermutation(final int[] p) {
    method concatenatePermutations (line 73) | public static int[] concatenatePermutations(final int[] first, final i...
    method conjugateWithReverse (line 91) | public static int[] conjugateWithReverse(final int[] p) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/codec/transpose/TransposeCodecInfo.java
  class TransposeCodecInfo (line 24) | @NameConfig.Name(value = TransposeCodecInfo.TYPE)
    method TransposeCodecInfo (line 32) | public TransposeCodecInfo() {
    method TransposeCodecInfo (line 36) | public TransposeCodecInfo(int[] order) {
    method getType (line 41) | @Override
    method getOrder (line 47) | public int[] getOrder() {
    method create (line 52) | @Override
    method equals (line 59) | @Override
    method validate (line 68) | private void validate() {
    method concatenate (line 80) | public static TransposeCodecInfo concatenate(TransposeCodecInfo[] info...

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/ApacheListResponseParser.java
  class ApacheListResponseParser (line 8) | abstract class ApacheListResponseParser extends PatternListResponseParser {
    method ApacheListResponseParser (line 14) | ApacheListResponseParser(Pattern pattern) {
    class ListDirectories (line 19) | static class ListDirectories extends ApacheListResponseParser {
      method ListDirectories (line 21) | public ListDirectories() {
    class ListAll (line 27) | static class ListAll extends ApacheListResponseParser {
      method ListAll (line 29) | public ListAll() {
    method directoryParser (line 35) | public static ListResponseParser directoryParser() {
    method parser (line 40) | public static ListResponseParser parser() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/CandidateListResponseParser.java
  class CandidateListResponseParser (line 3) | class CandidateListResponseParser implements ListResponseParser {
    method CandidateListResponseParser (line 9) | CandidateListResponseParser(ListResponseParser[] candidateParsers) {
    method parseListResponse (line 14) | @Override
    method successfulParser (line 33) | public ListResponseParser successfulParser() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/ListResponseParser.java
  type ListResponseParser (line 3) | public interface ListResponseParser {
    method parseListResponse (line 13) | String[] parseListResponse(final String response);
    method defaultListParser (line 15) | public static ListResponseParser defaultListParser() {
    method defaultDirectoryListParser (line 25) | public static ListResponseParser defaultDirectoryListParser() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/MicrosoftListResponseParser.java
  class MicrosoftListResponseParser (line 8) | abstract class MicrosoftListResponseParser extends PatternListResponsePa...
    method MicrosoftListResponseParser (line 14) | MicrosoftListResponseParser(Pattern pattern) {
    class ListDirectories (line 19) | static class ListDirectories extends MicrosoftListResponseParser {
      method ListDirectories (line 21) | public ListDirectories() {
    class ListAll (line 27) | static class ListAll extends MicrosoftListResponseParser {
      method ListAll (line 29) | public ListAll() {
    method directoryParser (line 35) | public static ListResponseParser directoryParser() {
    method parser (line 40) | public static ListResponseParser parser() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/PatternListResponseParser.java
  class PatternListResponseParser (line 14) | class PatternListResponseParser implements ListResponseParser {
    method PatternListResponseParser (line 18) | public PatternListResponseParser(Pattern pattern) {
    method parseListResponse (line 23) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/http/PythonListResponseParser.java
  class PythonListResponseParser (line 8) | abstract class PythonListResponseParser extends PatternListResponseParser {
    method PythonListResponseParser (line 14) | PythonListResponseParser(Pattern pattern) {
    class ListDirectories (line 19) | static class ListDirectories extends PythonListResponseParser {
      method ListDirectories (line 21) | public ListDirectories() {
    class ListAll (line 27) | static class ListAll extends PythonListResponseParser {
      method ListAll (line 29) | public ListAll() {
    method directoryParser (line 35) | public static ListResponseParser directoryParser() {
    method parser (line 40) | public static ListResponseParser parser() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/ByteArrayReadData.java
  class ByteArrayReadData (line 7) | class ByteArrayReadData implements ReadData {
    method ByteArrayReadData (line 15) | ByteArrayReadData(final byte[] data) {
    method ByteArrayReadData (line 20) | ByteArrayReadData(final byte[] data, final int offset, final int lengt...
    method length (line 35) | @Override
    method requireLength (line 40) | @Override
    method inputStream (line 45) | @Override
    method allBytes (line 51) | @Override
    method materialize (line 61) | @Override
    method slice (line 66) | @Override
    method validBounds (line 73) | private static boolean validBounds(int arrayLength, int offset, int le...

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/InputStreamReadData.java
  class InputStreamReadData (line 10) | class InputStreamReadData implements ReadData {
    method InputStreamReadData (line 15) | InputStreamReadData(final InputStream inputStream, final int length) {
    method length (line 20) | @Override
    method requireLength (line 25) | @Override
    method slice (line 35) | @Override
    method limit (line 41) | @Override
    method inputStream (line 48) | @Override
    method allBytes (line 60) | @Override
    method materialize (line 68) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/LazyGeneratedReadData.java
  class LazyGeneratedReadData (line 11) | class LazyGeneratedReadData implements ReadData {
    method LazyGeneratedReadData (line 13) | LazyGeneratedReadData(final ReadData.Generator generator) {
    method LazyGeneratedReadData (line 26) | LazyGeneratedReadData(final ReadData data, final OutputStreamOperator ...
    method materialize (line 40) | @Override
    method length (line 54) | @Override
    method requireLength (line 59) | @Override
    method slice (line 69) | @Override
    method inputStream (line 75) | @Override
    method allBytes (line 81) | @Override
    method writeTo (line 87) | @Override
    method close (line 108) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/LazyRead.java
  type LazyRead (line 15) | public interface LazyRead extends Closeable {
    method materialize (line 37) | ReadData materialize(long offset, long length) throws N5IOException;
    method size (line 47) | long size() throws N5IOException;
    method prefetch (line 60) | default void prefetch(final Collection<? extends Range> ranges) throws...

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/LazyReadData.java
  class LazyReadData (line 13) | class LazyReadData implements VolatileReadData {
    method LazyReadData (line 20) | LazyReadData(final LazyRead lazyRead) {
    method LazyReadData (line 24) | private LazyReadData(final LazyRead lazyRead, final long offset, final...
    method materialize (line 30) | @Override
    method slice (line 51) | @Override
    method inputStream (line 70) | @Override
    method allBytes (line 76) | @Override
    method length (line 82) | @Override
    method requireLength (line 87) | @Override
    method prefetch (line 95) | @Override
    method close (line 100) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/Range.java
  type Range (line 10) | public interface Range {
    method offset (line 23) | long offset();
    method length (line 28) | long length();
    method end (line 33) | default long end() {
    method equals (line 37) | static boolean equals(final Range r0, final Range r1) {
    method at (line 47) | static Range at(final long offset, final long length) {
    method aggregate (line 109) | static Collection<? extends Range> aggregate(final Collection<? extend...

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/ReadData.java
  type ReadData (line 30) | public interface ReadData {
    method length (line 38) | default long length() {
    method requireLength (line 53) | long requireLength() throws N5IOException;
    method limit (line 64) | default ReadData limit(final long length) throws N5IOException {
    method slice (line 77) | default ReadData slice(final long offset, final long length) throws N5...
    method slice (line 89) | default ReadData slice(final Range range) throws N5IOException {
    method inputStream (line 109) | InputStream inputStream() throws N5IOException, IllegalStateException;
    method allBytes (line 128) | byte[] allBytes() throws N5IOException, IllegalStateException;
    method toByteBuffer (line 148) | default ByteBuffer toByteBuffer() throws N5IOException, IllegalStateEx...
    method materialize (line 170) | ReadData materialize() throws N5IOException;
    method writeTo (line 190) | default void writeTo(OutputStream outputStream) throws N5IOException, ...
    method prefetch (line 209) | default void prefetch(final Collection<? extends Range> ranges) throws...
    method encode (line 224) | default ReadData encode(OutputStreamOperator encoder) {
    type OutputStreamOperator (line 236) | @FunctionalInterface
      method apply (line 239) | OutputStream apply(OutputStream o) throws IOException;
    method from (line 260) | static ReadData from(final InputStream inputStream, final int length) {
    method from (line 273) | static ReadData from(final InputStream inputStream) {
    method from (line 290) | static ReadData from(final byte[] data, final int offset, final int le...
    method from (line 302) | static ReadData from(final byte[] data) {
    method from (line 314) | static ReadData from(final ByteBuffer data) {
    type Generator (line 329) | @FunctionalInterface
      method writeTo (line 331) | void writeTo(OutputStream outputStream) throws IOException, IllegalS...
    method from (line 342) | static ReadData from(Generator generator) {
    method empty (line 351) | static ReadData empty() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/VolatileReadData.java
  type VolatileReadData (line 16) | public interface VolatileReadData extends ReadData, AutoCloseable {
    method close (line 18) | @Override
    method from (line 31) | static VolatileReadData from(final LazyRead lazyRead) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/prefetch/AggregatingPrefetchLazyRead.java
  class AggregatingPrefetchLazyRead (line 16) | public class AggregatingPrefetchLazyRead extends SliceTrackingLazyRead {
    method AggregatingPrefetchLazyRead (line 18) | public AggregatingPrefetchLazyRead(final LazyRead delegate) {
    method prefetch (line 33) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/prefetch/EnclosingPrefetchLazyRead.java
  class EnclosingPrefetchLazyRead (line 12) | public class EnclosingPrefetchLazyRead extends SliceTrackingLazyRead {
    method EnclosingPrefetchLazyRead (line 14) | public EnclosingPrefetchLazyRead(final LazyRead delegate) {
    method prefetch (line 33) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/prefetch/SliceTrackingLazyRead.java
  class SliceTrackingLazyRead (line 20) | public class SliceTrackingLazyRead implements LazyRead {
    class Slice (line 22) | protected static class Slice implements Range {
      method Slice (line 31) | Slice(final long offset, final long length, final ReadData data) {
      method offset (line 37) | @Override
      method length (line 42) | @Override
      method toString (line 47) | @Override
    method SliceTrackingLazyRead (line 60) | public SliceTrackingLazyRead(final LazyRead delegate) {
    method close (line 64) | @Override
    method materialize (line 69) | @Override
    method size (line 81) | @Override
    method isCovered (line 86) | protected boolean isCovered(final Range slice) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/prefetch/Slices.java
  class Slices (line 8) | class Slices {
    method Slices (line 10) | private Slices() {
    method findContainingSlice (line 33) | static <T extends Range> T findContainingSlice(final List<T> slices, f...
    method findContainingSlice (line 71) | static <T extends Range> T findContainingSlice(final List<T> slices, f...
    method addSlice (line 97) | static <T extends Range> void addSlice(final List<T> slices, final T s...

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/segment/ConcatenatedReadData.java
  class ConcatenatedReadData (line 29) | class ConcatenatedReadData implements SegmentedReadData {
    method ConcatenatedReadData (line 39) | ConcatenatedReadData(final List<SegmentedReadData> content) {
    method ConcatenatedReadData (line 50) | private ConcatenatedReadData(final ReadData delegate, final List<Segme...
    method ensureKnownSize (line 69) | private void ensureKnownSize() throws IllegalStateException {
    method location (line 94) | @Override
    method segments (line 104) | @Override
    method length (line 109) | @Override
    method requireLength (line 125) | @Override
    method slice (line 136) | @Override
    method slice (line 143) | @Override
    method inputStream (line 175) | @Override
    method allBytes (line 180) | @Override
    method toByteBuffer (line 185) | @Override
    method materialize (line 190) | @Override
    method writeTo (line 196) | @Override
    method encode (line 201) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/segment/DefaultSegmentedReadData.java
  class DefaultSegmentedReadData (line 23) | class DefaultSegmentedReadData implements SegmentedReadData {
    class SegmentImpl (line 48) | private static class SegmentImpl implements Segment, Range {
      method SegmentImpl (line 54) | public SegmentImpl(final SegmentedReadData source, final Range locat...
      method SegmentImpl (line 58) | public SegmentImpl(final SegmentedReadData source, final long offset...
      method offset (line 64) | @Override
      method length (line 69) | @Override
      method source (line 74) | @Override
    class EnclosingSegmentImpl (line 80) | private static class EnclosingSegmentImpl extends SegmentImpl {
      method EnclosingSegmentImpl (line 82) | public EnclosingSegmentImpl(final SegmentedReadData source) {
      method length (line 86) | @Override
    method DefaultSegmentedReadData (line 93) | private DefaultSegmentedReadData(final ReadData delegate, final ReadDa...
    method DefaultSegmentedReadData (line 101) | private DefaultSegmentedReadData(final ReadData delegate, final List<S...
    method wrap (line 114) | static SegmentsAndData wrap(final ReadData readData, final List<Range>...
    method DefaultSegmentedReadData (line 140) | DefaultSegmentedReadData(final ReadData delegate) {
    method location (line 147) | @Override
    method segments (line 157) | @Override
    method length (line 162) | @Override
    method requireLength (line 167) | @Override
    method slice (line 172) | @Override
    method slice (line 189) | @Override
    method inputStream (line 237) | @Override
    method allBytes (line 242) | @Override
    method toByteBuffer (line 247) | @Override
    method materialize (line 252) | @Override
    method writeTo (line 258) | @Override
    method prefetch (line 263) | @Override
    method encode (line 279) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/segment/Segment.java
  type Segment (line 6) | public interface Segment {
    method source (line 20) | SegmentedReadData source();

FILE: src/main/java/org/janelia/saalfeldlab/n5/readdata/segment/SegmentedReadData.java
  type SegmentedReadData (line 19) | public interface SegmentedReadData extends ReadData {
    type SegmentsAndData (line 21) | interface SegmentsAndData {
      method segments (line 22) | List<Segment> segments();
      method data (line 23) | SegmentedReadData data();
    method wrap (line 36) | static SegmentedReadData wrap(ReadData readData) {
    method wrap (line 53) | static SegmentsAndData wrap(ReadData readData, Range... locations) {
    method wrap (line 70) | static SegmentsAndData wrap(ReadData readData, List<Range> locations) {
    method concatenate (line 91) | static SegmentedReadData concatenate(List<SegmentedReadData> readDatas) {
    method location (line 113) | Range location(Segment segment) throws IllegalArgumentException;
    method segments (line 121) | List<? extends Segment> segments();
    method limit (line 123) | @Override
    method slice (line 141) | SegmentedReadData slice(Segment segment) throws IllegalArgumentExcepti...
    method slice (line 155) | @Override
    method slice (line 169) | @Override
    method materialize (line 174) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/serialization/JsonArrayUtils.java
  class JsonArrayUtils (line 6) | public class JsonArrayUtils {
    method reverse (line 14) | public static void reverse(final JsonArray array) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/serialization/N5Annotations.java
  type N5Annotations (line 19) | public interface N5Annotations extends Serializable {

FILE: src/main/java/org/janelia/saalfeldlab/n5/serialization/NameConfig.java
  type NameConfig (line 30) | public interface NameConfig extends Serializable {
    method getType (line 120) | default String getType() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/DatasetAccess.java
  type DatasetAccess (line 19) | public interface DatasetAccess<T> {
    method readChunk (line 38) | DataBlock<T> readChunk(PositionValueAccess pva, long[] gridPosition) t...
    method readChunks (line 61) | List<DataBlock<T>> readChunks(PositionValueAccess pva, List<long[]> gr...
    method writeChunk (line 67) | void writeChunk(PositionValueAccess pva, DataBlock<T> chunk) throws N5...
    method writeChunks (line 73) | void writeChunks(PositionValueAccess pva, List<DataBlock<T>> chunks) t...
    method deleteChunk (line 80) | boolean deleteChunk(PositionValueAccess pva, long[] gridPosition) thro...
    method deleteChunks (line 87) | boolean deleteChunks(PositionValueAccess pva, List<long[]> gridPositio...
    method writeRegion (line 102) | void writeRegion(
    method writeRegion (line 128) | void writeRegion(
    method readBlock (line 155) | DataBlock<T> readBlock(PositionValueAccess pva, long[] shardGridPositi...
    method writeBlock (line 175) | void writeBlock(PositionValueAccess pva, DataBlock<T> dataBlock, int l...
    method getGrid (line 177) | NestedGrid getGrid();

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/DefaultDatasetAccess.java
  class DefaultDatasetAccess (line 32) | public class DefaultDatasetAccess<T> implements DatasetAccess<T> {
    method DefaultDatasetAccess (line 37) | public DefaultDatasetAccess(final NestedGrid grid, final BlockCodec<?>...
    method getGrid (line 42) | public NestedGrid getGrid() {
    method readChunk (line 46) | @Override
    method readChunkRecursive (line 56) | private DataBlock<T> readChunkRecursive(
    method readChunks (line 74) | @Override
    method readChunksRecursive (line 108) | private void readChunksRecursive(
    method writeChunk (line 154) | @Override
    method writeChunkRecursive (line 175) | private ReadData writeChunkRecursive(
    method writeChunks (line 199) | @Override
    method writeChunksRecursive (line 233) | private ReadData writeChunksRecursive(
    method writeRegion (line 269) | @Override
    method writeRegion (line 296) | @Override
    method writeRegionRecursive (line 325) | private ReadData writeRegionRecursive(
    method deleteChunk (line 384) | @Override
    method deleteChunkRecursive (line 417) | private ReadData deleteChunkRecursive(
    method deleteChunks (line 458) | @Override
    method deleteChunksRecursive (line 514) | private ReadData deleteChunksRecursive(
    method readBlock (line 620) | @Override
    method readBlockInternal (line 643) | private DataBlock<T> readBlockInternal(
    method writeBlock (line 703) | @Override
    method getRawShard (line 778) | private RawShard getRawShard(
    class ChunkRequest (line 811) | private static final class ChunkRequest<T> {
      method ChunkRequest (line 818) | ChunkRequest(final NestedPosition position, final int index) {
      method ChunkRequest (line 825) | ChunkRequest(final NestedPosition position, final DataBlock<T> chunk) {
      method toString (line 831) | @Override
    class ChunkRequests (line 852) | private static final class ChunkRequests<T> implements Iterable<ChunkR...
      method ChunkRequests (line 858) | private ChunkRequests(final List<ChunkRequest<T>> requests, final in...
      method removeDuplicates (line 875) | public List<ChunkRequest<T>> removeDuplicates() {
      method iterator (line 894) | @Override
      method level (line 908) | public int level() {
      method gridPosition (line 916) | public long[] gridPosition() {
      method relativeGridPosition (line 924) | public long[] relativeGridPosition() {
      method position (line 928) | private NestedPosition position() {
      method split (line 937) | public List<ChunkRequests<T>> split() {
      method coversShard (line 964) | public boolean coversShard() {
      method chunks (line 982) | public List<DataBlock<T>> chunks(final List<ChunkRequest<T>> duplica...
    method createReadRequests (line 1006) | private ChunkRequests<T> createReadRequests(final List<long[]> gridPos...
    method createWriteRequests (line 1027) | private ChunkRequests<T> createWriteRequests(final List<DataBlock<T>> ...
    type DataBlockFactory (line 1045) | private interface DataBlockFactory<T> {
      method createDataBlock (line 1047) | DataBlock<T> createDataBlock(final int[] blockSize, final long[] gri...
      method of (line 1049) | @SuppressWarnings("unchecked")

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/DefaultShardCodecInfo.java
  class DefaultShardCodecInfo (line 19) | @NameConfig.Name(value = "sharding_indexed")
    method getType (line 22) | @Override
    method DefaultShardCodecInfo (line 50) | DefaultShardCodecInfo() {
    method DefaultShardCodecInfo (line 55) | public DefaultShardCodecInfo(
    method DefaultShardCodecInfo (line 76) | public DefaultShardCodecInfo(
    method build (line 93) | private void build() {
    method getInnerBlockSize (line 119) | @Override
    method getInnerDatasetCodecInfos (line 124) | @Override
    method getInnerBlockCodecInfo (line 129) | @Override
    method getInnerDataCodecInfos (line 134) | @Override
    method getIndexBlockCodecInfo (line 139) | @Override
    method getIndexDataCodecInfos (line 144) | @Override
    method getIndexLocation (line 149) | @Override
    method getCodecs (line 154) | public CodecInfo[] getCodecs() {
    method getIndexCodecs (line 158) | public CodecInfo[] getIndexCodecs() {
    method create (line 162) | @Override
    method concatenateCodecs (line 181) | private static CodecInfo[] concatenateCodecs(BlockCodecInfo blkInfo, D...

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/Nesting.java
  class Nesting (line 40) | public class Nesting {
    class NestedPosition (line 46) | public static class NestedPosition implements Comparable<NestedPositio...
      method NestedPosition (line 52) | protected NestedPosition(final NestedGrid grid, final long[] positio...
      method level (line 67) | public int level() {
      method numDimensions (line 71) | public int numDimensions() {
      method relative (line 84) | public long[] relative(final int level) {
      method relative (line 95) | public long[] relative() {
      method absolute (line 107) | public long[] absolute(final int level) {
      method key (line 111) | public long[] key() {
      method pixelPosition (line 115) | public long[] pixelPosition() {
      method maxPixelPosition (line 119) | public long[] maxPixelPosition() {
      method toString (line 123) | @Override
      method compareTo (line 141) | @Override
      method equals (line 172) | @Override
      method hashCode (line 185) | @Override
    class NestedGrid (line 205) | public static class NestedGrid {
      method NestedGrid (line 244) | public NestedGrid(int[][] blockSizes, long[] datasetSize) {
      method NestedGrid (line 304) | public NestedGrid(int[][] blockSizes) {
      method nestedPosition (line 327) | public NestedPosition nestedPosition(final long[] position, final in...
      method nestedPosition (line 345) | public NestedPosition nestedPosition(final long[] position) {
      method numLevels (line 349) | public int numLevels() {
      method numDimensions (line 353) | public int numDimensions() {
      method getBlockSize (line 360) | public int[] getBlockSize(final int level) {
      method pixelPosition (line 375) | public void pixelPosition(
      method pixelPosition (line 396) | public long[] pixelPosition(
      method maxPixelPosition (line 419) | public void maxPixelPosition(
      method maxPixelPosition (line 444) | public long[] maxPixelPosition(
      method absolutePosition (line 470) | public void absolutePosition(
      method absolutePosition (line 499) | public long[] absolutePosition(
      method absolutePosition (line 526) | public long[] absolutePosition(
      method relativePosition (line 554) | public void relativePosition(
      method relativePosition (line 568) | public long[] relativePosition(
      method relativeBlockSize (line 584) | public int[] relativeBlockSize(final int level) {
      method relativeToBaseBlockSize (line 595) | public int[] relativeToBaseBlockSize(final int level) {
      method getDatasetSize (line 607) | public long[] getDatasetSize() {
      method getDatasetSizeInChunks (line 619) | public long[] getDatasetSizeInChunks() {

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/PositionValueAccess.java
  type PositionValueAccess (line 17) | public interface PositionValueAccess {
    method get (line 33) | VolatileReadData get(long[] key) throws N5Exception.N5IOException;
    method set (line 47) | void set(long[] key, ReadData data) throws N5Exception.N5IOException;
    method exists (line 49) | boolean exists(long[] key) throws N5Exception.N5IOException;
    method remove (line 51) | boolean remove(long[] key) throws N5Exception.N5IOException;
    method fromKva (line 53) | static PositionValueAccess fromKva(
    class KvaPositionValueAccess (line 62) | class KvaPositionValueAccess implements PositionValueAccess {
      method KvaPositionValueAccess (line 69) | KvaPositionValueAccess(final KeyValueAccess kva,
      method absolutePath (line 88) | protected String absolutePath(final long... gridPosition) {
      method get (line 92) | @Override
      method exists (line 101) | @Override
      method set (line 106) | @Override
      method remove (line 115) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/RawShard.java
  class RawShard (line 13) | public class RawShard {
    method RawShard (line 19) | RawShard(final int[] size) {
    method RawShard (line 24) | RawShard(final SegmentedReadData sourceData, final NDArray<Segment> in...
    method RawShard (line 29) | RawShard(final ShardIndex.SegmentIndexAndData segmentIndexAndData) {
    method sourceData (line 39) | public SegmentedReadData sourceData() {
    method index (line 49) | public NDArray<Segment> index() {
    method isEmpty (line 53) | public boolean isEmpty() {
    method getElementData (line 57) | public ReadData getElementData(final long[] pos) {
    method setElementData (line 62) | public void setElementData(final ReadData data, final long[] pos) {
    method prefetch (line 67) | public void prefetch(List<long[]> positions) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/RawShardCodec.java
  class RawShardCodec (line 17) | public class RawShardCodec implements BlockCodec<RawShard> {
    method RawShardCodec (line 27) | RawShardCodec(final int[] size, final IndexLocation indexLocation, fin...
    method encode (line 35) | @Override
    method decode (line 73) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/RawShardDataBlock.java
  class RawShardDataBlock (line 9) | public class RawShardDataBlock implements DataBlock<RawShard> {
    method RawShardDataBlock (line 15) | RawShardDataBlock(final long[] gridPosition, final RawShard shard) {
    method getSize (line 23) | @Override
    method getGridPosition (line 28) | @Override
    method getNumElements (line 33) | @Override
    method getData (line 38) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/Region.java
  class Region (line 14) | public class Region {
    method Region (line 47) | public Region(final long[] min, final long[] size, final NestedGrid gr...
    method minPos (line 68) | public Nesting.NestedPosition minPos() {
    method maxPos (line 75) | public Nesting.NestedPosition maxPos() {
    method fullyContains (line 92) | public boolean fullyContains(final Nesting.NestedPosition position) {
    method containedNestedPositions (line 120) | List<Nesting.NestedPosition> containedNestedPositions(final Nesting.Ne...
    method gridPositions (line 141) | public static List<long[]> gridPositions(final long[] min, final long[...

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/ShardCodecInfo.java
  type ShardCodecInfo (line 9) | public interface ShardCodecInfo extends BlockCodecInfo {
    method getInnerBlockSize (line 16) | int[] getInnerBlockSize();
    method getInnerDatasetCodecInfos (line 22) | DatasetCodecInfo[] getInnerDatasetCodecInfos();
    method getInnerBlockCodecInfo (line 29) | BlockCodecInfo getInnerBlockCodecInfo();
    method getInnerDataCodecInfos (line 35) | DataCodecInfo[] getInnerDataCodecInfos();
    method getIndexBlockCodecInfo (line 42) | BlockCodecInfo getIndexBlockCodecInfo();
    method getIndexDataCodecInfos (line 49) | DataCodecInfo[] getIndexDataCodecInfos();
    method getIndexLocation (line 51) | IndexLocation getIndexLocation();
    method create (line 53) | @SuppressWarnings("unchecked")
    method create (line 59) | RawShardCodec create(int[] blockSize, DataCodecInfo... codecs);

FILE: src/main/java/org/janelia/saalfeldlab/n5/shard/ShardIndex.java
  class ShardIndex (line 18) | public class ShardIndex {
    method ShardIndex (line 20) | private ShardIndex() {
    type IndexLocation (line 24) | public enum IndexLocation {
    class NDArray (line 35) | public static class NDArray<T> {
      method NDArray (line 41) | NDArray(final int[] size, final IntFunction<T[]> createArray) {
      method NDArray (line 47) | NDArray(final int[] size, final T[] data) {
      method get (line 53) | T get(long... position) {
      method set (line 57) | void set(T value, long... position) {
      method index (line 61) | private int index(long... position) {
      method size (line 69) | public int[] size() {
      method numElements (line 73) | public int numElements() {
      method allElementsNull (line 77) | public boolean allElementsNull() {
    method getNumElements (line 87) | static int getNumElements(final int[] size) {
    method getStrides (line 95) | static int[] getStrides(final int[] size) {
    method fromDataBlock (line 116) | static NDArray<Range> fromDataBlock( final DataBlock<long[]> block ) {
    method toDataBlock (line 133) | static DataBlock<long[]> toDataBlock( final NDArray<Range> locations, ...
    method prepend (line 159) | private static int[] prepend(final int value, final int[] array) {
    method blockSizeFromIndexSize (line 170) | static int[] blockSizeFromIndexSize(final int[] indexSize) {
    method indexSizeFromBlockSize (line 177) | static int[] indexSizeFromBlockSize(final int[] blockSize) {
    method locations (line 187) | static NDArray<Range> locations(final NDArray<Segment> segments, final...
    type SegmentIndexAndData (line 200) | interface SegmentIndexAndData {
      method index (line 201) | NDArray<Segment> index();
      method data (line 202) | SegmentedReadData data();
    method segments (line 211) | static SegmentIndexAndData segments(final NDArray<Range> locations, fi...

FILE: src/main/java/org/janelia/saalfeldlab/n5/util/FloatValueParser.java
  class FloatValueParser (line 15) | public class FloatValueParser {
    method parseFloat (line 26) | public static float parseFloat(String hexString) throws N5Exception {
    method encodeFloat (line 40) | public static String encodeFloat(float value) {
    method validateFloat (line 45) | private static void validateFloat(String hexString) {
    method parseDouble (line 60) | public static double parseDouble(String hexString) throws N5Exception {
    method encodeDouble (line 74) | public static String encodeDouble(double value) {
    method validateDouble (line 79) | private static void validateDouble(String hexString) {
    method parseBytes (line 94) | public static byte[] parseBytes(String hexString) throws N5Exception {
    method validateBytes (line 104) | private static void validateBytes(String hexString) {

FILE: src/main/java/org/janelia/saalfeldlab/n5/util/MemCopy.java
  type MemCopy (line 12) | public interface MemCopy<T> {
    method forDataType (line 21) | static MemCopy<?> forDataType(final DataType dataType) {
    method copyStrided (line 55) | void copyStrided(T src, int srcPos, T dest, int destPos, int destStrid...
    class MemCopyByte (line 57) | class MemCopyByte implements MemCopy<byte[]> {
      method copyStrided (line 59) | @Override
    class MemCopyShort (line 69) | class MemCopyShort implements MemCopy<short[]> {
      method copyStrided (line 71) | @Override
    class MemCopyInt (line 81) | class MemCopyInt implements MemCopy<int[]> {
      method copyStrided (line 83) | @Override
    class MemCopyLong (line 93) | class MemCopyLong implements MemCopy<long[]> {
      method copyStrided (line 95) | @Override
    class MemCopyFloat (line 105) | class MemCopyFloat implements MemCopy<float[]> {
      method copyStrided (line 107) | @Override
    class MemCopyDouble (line 117) | class MemCopyDouble implements MemCopy<double[]> {
      method copyStrided (line 119) | @Override

FILE: src/main/java/org/janelia/saalfeldlab/n5/util/SubArrayCopy.java
  type SubArrayCopy (line 11) | public interface SubArrayCopy
    method copy (line 34) | static void copy( Object src, int[] srcSize, int[] srcPos, Object dest...
    method positionToIndex (line 55) | static int positionToIndex( final int[] position, final int[] dimensio...
    method createAllocationSteps (line 73) | static void createAllocationSteps( final int[] dimensions, final int[]...
    method createAllocationSteps (line 82) | static int[] createAllocationSteps( final int[] dimensions )
    method copyNDRangeRecursive (line 119) | static <T> void copyNDRangeRecursive(

FILE: src/test/java/org/janelia/saalfeldlab/n5/AbstractN5Test.java
  class AbstractN5Test (line 58) | public abstract class AbstractN5Test {
    method createTempUri (line 78) | public static URI createTempUri(String prefix, String suffix, URI base) {
    method createTempN5Writer (line 88) | public N5Writer createTempN5Writer() {
    method createTempN5Writer (line 97) | public final N5Writer createTempN5Writer(String location) {
    method createTempN5Writer (line 102) | protected final N5Writer createTempN5Writer(String location, GsonBuild...
    method removeTempWriters (line 114) | @After
    method tempN5Location (line 128) | protected abstract String tempN5Location() throws URISyntaxException, ...
    method createN5Writer (line 130) | protected N5Writer createN5Writer() throws IOException, URISyntaxExcep...
    method createN5Writer (line 135) | protected N5Writer createN5Writer(final String location) throws IOExce...
    method createN5Writer (line 141) | protected abstract N5Writer createN5Writer(String location, GsonBuilde...
    method createN5Reader (line 143) | protected N5Reader createN5Reader(final String location) throws IOExce...
    method createN5Reader (line 148) | protected abstract N5Reader createN5Reader(String location, GsonBuilde...
    method getCompressions (line 150) | protected Compression[] getCompressions() {
    method setUpOnce (line 162) | @Before
    method testCreateGroup (line 182) | @Test
    method testSetAttributeDoesntCreateGroup (line 197) | @Test
    method testCreateDataset (line 208) | @Test
    method testBlocksLargerThanDimensions (line 225) | @Test
    method testUnalignedBlocksTruncatedAtEnd (line 254) | @Test
    method testWriteReadByteBlock (line 309) | @Test
    method testWriteReadStringBlock (line 329) | @Test
    method testWriteReadShortBlock (line 351) | @Test
    method testWriteReadIntBlock (line 373) | @Test
    method testWriteReadLongBlock (line 395) | @Test
    method testWriteReadFloatBlock (line 417) | @Test
    method testWriteReadDoubleBlock (line 434) | @Test
    method testReadChunkVsBlock (line 451) | @Test
    method testMode1WriteReadByteBlock (line 481) | @Test
    method testWriteReadSerializableBlock (line 505) | @Test
    method testWriteInvalidBlock (line 530) | @Test
    method testOverwriteBlock (line 581) | @Test
    method testAttributeParsingPrimitive (line 603) | @Test
    method testAttributes (line 679) | @Test
    method testDatasetAttributes (line 746) | @Test
    method testNullAttributes (line 761) | @Test
    method testRemoveAttributes (line 846) | @Test
    method testRemoveContainer (line 959) | @Test
    method testUri (line 973) | @Test
    method testRemoveGroup (line 983) | @Test
    method testList (line 994) | @Test
    method testDeepList (line 1028) | @Test
    method testExists (line 1145) | @Test
    method testListAttributes (line 1166) | @Test
    method testVersion (line 1215) | @Test
    method testReaderCreation (line 1237) | @Test
    method testDelete (line 1280) | @Test
    class TestData (line 1319) | public static class TestData<T> {
      method TestData (line 1326) | @SuppressWarnings("unchecked")
    method testAttributePathEquivalence (line 1336) | protected static void testAttributePathEquivalence(final N5Writer writ...
    method addAndTest (line 1358) | protected static void addAndTest(final N5Writer writer, final ArrayLis...
    method runTests (line 1379) | protected static void runTests(final N5Writer writer, final ArrayList<...
    method customObjectTest (line 1387) | @Test
    method testAttributePaths (line 1422) | @Test
    method testAttributePathEscaping (line 1534) | @Test
    method jsonKeyVal (line 1615) | private String jsonKeyVal(final String key, final String val) {
    method testRootLeaves (line 1620) | @Test
    method testWriterSeparation (line 1709) | @Test
    method illegalChars (line 1728) | protected String[] illegalChars() {
    method testPathsWithIllegalUriCharacters (line 1732) | @Test
    method assertBlockEquals (line 1764) | public static void assertBlockEquals(final DataBlock<?> expected, fina...
    method assertDatasetAttributesEquals (line 1792) | protected void assertDatasetAttributesEquals(final DatasetAttributes e...

FILE: src/test/java/org/janelia/saalfeldlab/n5/DatasetAttributesTest.java
  class DatasetAttributesTest (line 20) | public class DatasetAttributesTest {
    method testValidateBlockShardSizesValid (line 25) | @Test
    method shardDatasetAttributes (line 73) | private static DatasetAttributes shardDatasetAttributes(
    method builderTests (line 87) | @Test
    method testValidateBlockShardSizesInvalid (line 123) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/FileKeyLockManagerTest.java
  class FileKeyLockManagerTest (line 27) | public class FileKeyLockManagerTest {
    method setUp (line 31) | @Before
    method tearDown (line 37) | @After
    method testConcurrentReads (line 53) | @Test
    method testReadWriteExclusion (line 118) | @Test
    class CleanUpHelper (line 164) | private class CleanUpHelper implements Closeable {
      method CleanUpHelper (line 169) | CleanUpHelper() throws IOException, InterruptedException {
      method tryWaitForSize (line 176) | private void tryWaitForSize(final int expectedSize) throws IOExcepti...
      method tryWaitForSize (line 180) | private void tryWaitForSize(final int expectedSize, final int numIte...
      method close (line 201) | @Override
    method testLockCleanup (line 207) | @Test
    method testWriteLockCreatesFile (line 247) | @Test
    method testWriteLockCreatesParentDirectories (line 266) | @Test
    method testReadLockRequiresExistingFile (line 287) | @Test
    method testLocksMapEmptyAfterProperClose (line 293) | @Test
    method testLocksMapEmptyAfterLeakedChannelIsGCd (line 312) | @Test
    method acquireAndLeakLock (line 331) | private void acquireAndLeakLock(final Path path) throws IOException {

FILE: src/test/java/org/janelia/saalfeldlab/n5/FsLockTest.java
  class FsLockTest (line 16) | public class FsLockTest {
    method tempPathName (line 20) | private static String tempPathName() {
    method testReadLock (line 33) | @Test
    method testWriteLock (line 67) | @Test
    method testFSLockRelease (line 98) | @Test
    method testReadLockBehavior (line 131) | @Test
    method testWriteLockBehavior (line 175) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/N5Benchmark.java
  class N5Benchmark (line 40) | public class N5Benchmark {
    method setUpBeforeClass (line 70) | @BeforeClass
    method rampDownAfterClass (line 91) | @AfterClass
    method setUp (line 100) | @Before
    method testDocExample (line 107) | public void testDocExample() {
    method benchmarkWritingSpeed (line 124) | public void benchmarkWritingSpeed() {
    method benchmarkParallelWritingSpeed (line 200) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/N5CachedFSTest.java
  class N5CachedFSTest (line 26) | public class N5CachedFSTest extends N5FSTest {
    method createN5Writer (line 28) | @Override
    method createN5Reader (line 34) | @Override
    method createN5Writer (line 40) | protected N5Writer createN5Writer(final String location, final GsonBui...
    method createN5Writer (line 45) | protected N5Writer createN5Writer(final String location, final boolean...
    method createN5Reader (line 50) | protected N5Reader createN5Reader(final String location, final GsonBui...
    method createN5Writer (line 55) | @Override protected N5Writer createN5Writer() throws IOException, URIS...
    method cacheTest (line 66) | @Test
    method cacheGroupDatasetTest (line 101) | @Test
    method cacheBehaviorTest (line 141) | @Test
    method cacheBehaviorHelper (line 154) | public static void cacheBehaviorHelper(final TrackingStorage n5) throw...
    type TrackingStorage (line 455) | public static interface TrackingStorage extends CachedGsonKeyValueN5Wr...
      method getAttrCallCount (line 457) | public int getAttrCallCount();
      method getExistCallCount (line 458) | public int getExistCallCount();
      method getGroupCallCount (line 459) | public int getGroupCallCount();
      method getGroupAttrCallCount (line 460) | public int getGroupAttrCallCount();
      method getDatasetCallCount (line 461) | public int getDatasetCallCount();
      method getDatasetAttrCallCount (line 462) | public int getDatasetAttrCallCount();
      method getListCallCount (line 463) | public int getListCallCount();
      method getWriteAttrCallCount (line 464) | public int getWriteAttrCallCount();
    class N5TrackingStorage (line 467) | public static class N5TrackingStorage extends N5KeyValueWriter impleme...
      method N5TrackingStorage (line 478) | public N5TrackingStorage(final KeyValueAccess keyValueAccess, final ...
      method getAttributesFromContainer (line 484) | @Override
      method existsFromContainer (line 490) | @Override
      method isGroupFromContainer (line 496) | @Override
      method isGroupFromAttributes (line 502) | @Override
      method isDatasetFromContainer (line 508) | @Override
      method isDatasetFromAttributes (line 514) | @Override
      method listFromContainer (line 520) | @Override
      method writeAttributes (line 526) | @Override public void writeAttributes(String normalGroupPath, JsonEl...
      method getAttrCallCount (line 531) | @Override
      method getExistCallCount (line 536) | @Override
      method getGroupCallCount (line 541) | @Override
      method getGroupAttrCallCount (line 546) | @Override
      method getDatasetCallCount (line 551) | @Override
      method getDatasetAttrCallCount (line 556) | @Override
      method getListCallCount (line 561) | @Override
      method getWriteAttrCallCount (line 566) | @Override public int getWriteAttrCallCount() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/N5FSTest.java
  class N5FSTest (line 34) | public class N5FSTest extends AbstractN5Test {
    method tempN5PathName (line 36) | private static String tempN5PathName() {
    method tempN5Location (line 49) | @Override
    method createN5Writer (line 56) | @Override
    method createN5Writer (line 62) | @Override
    method createN5Reader (line 70) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/N5ReadBenchmark.java
  class N5ReadBenchmark (line 24) | @State( Scope.Thread )
    method tempN5PathName (line 30) | private static String tempN5PathName() {
    method createData (line 52) | private static void createData() {
    method createTempN5Writer (line 71) | private static N5Writer createTempN5Writer() {
    method setup (line 78) | @Setup(Level.Trial)
    method bench (line 100) | @Benchmark
    method main (line 107) | public static void main( final String... args ) throws RunnerException...

FILE: src/test/java/org/janelia/saalfeldlab/n5/N5URITest.java
  class N5URITest (line 11) | public class N5URITest {
    method testAttributePath (line 12) | @Test
    method testEscapedAttributePaths (line 68) | @Test
    method testIsAbsolute (line 81) | @Test
    method testGetRelative (line 96) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/TrackingN5Writer.java
  class TrackingN5Writer (line 10) | public class TrackingN5Writer extends N5KeyValueWriter {
    method TrackingN5Writer (line 14) | public TrackingN5Writer(String basePath, KeyValueAccess kva) {
    method resetNumMaterializeCalls (line 20) | public void resetNumMaterializeCalls() {
    method getNumMaterializeCalls (line 24) | public int getNumMaterializeCalls() {
    method resetNumIsFileCalls (line 28) | public void resetNumIsFileCalls() {
    method getNumIsFileCalls (line 32) | public int getNumIsFileCalls() {
    method resetTotalBytesRead (line 36) | public void resetTotalBytesRead() {
    method getTotalBytesRead (line 40) | public long getTotalBytesRead() {
    method resetAllTracking (line 44) | public void resetAllTracking() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/UriTest.java
  class UriTest (line 12) | public class UriTest {
    method before (line 24) | @Before
    method testUriParsing (line 31) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/WriteLockExp.java
  class WriteLockExp (line 11) | public class WriteLockExp {
    method WriteLockExp (line 21) | public WriteLockExp(String root, int shardIdx) {
    method main (line 27) | public static void main(String[] args) {
    method run (line 36) | public void run() {
    method getOrCreateDataset (line 63) | public DatasetAttributes getOrCreateDataset(N5Writer n5) {
    method blockSupplier (line 78) | DataBlockSupplier<int[]> blockSupplier(final int i, final int[] chunkS...
    method data (line 93) | static int[] data(final int chunkN, final int value) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/backward/CompatibilityTest.java
  class CompatibilityTest (line 20) | public class CompatibilityTest {
    method testBackwardReads (line 31) | @Test
    method backwardReadHelper (line 38) | public void backwardReadHelper(final String base, final String dsetPat...
    method testBlockData (line 82) | @Test
    method read (line 114) | private byte[] read(KeyValueAccess kva, String path) {
    method expectedData (line 125) | private static byte[] expectedData(int size, byte value ) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/backward/CreateSampleData.java
  class CreateSampleData (line 14) | public class CreateSampleData {
    method main (line 16) | public static void main(String[] args) throws IOException {
    method createSampleData (line 23) | public static N5FSWriter createSampleData(String baseDir, String datas...
    method createDataBlock (line 63) | public static ByteArrayDataBlock createDataBlock(int[] size, long[] gr...

FILE: src/test/java/org/janelia/saalfeldlab/n5/benchmarks/N5BlockWriteBenchmarks.java
  class N5BlockWriteBenchmarks (line 39) | @State(Scope.Benchmark)
    method main (line 68) | public static void main( String[] args ) throws RunnerException {
    method teardown (line 74) | @TearDown(Level.Trial)
    method setup (line 81) | @Setup(Level.Trial)
    method writeBenchmark (line 121) | @Benchmark
    method readBenchmark (line 129) | @Benchmark
    method fillBlock (line 139) | private void fillBlock(DataType dtype, DataBlock<?> blk) {
    method fill (line 181) | private void fill(short[] arr) {
    method fill (line 186) | private void fill(int[] arr) {
    method fill (line 191) | private void fill(long[] arr) {
    method fill (line 196) | private void fill(float[] arr) {
    method fill (line 201) | private void fill(double[] arr) {
    method fill (line 206) | private void fill(byte[] arr) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/benchmarks/ReadDataBenchmarks.java
  class ReadDataBenchmarks (line 35) | @State(Scope.Benchmark)
    method ReadDataBenchmarks (line 51) | public ReadDataBenchmarks() {}
    method main (line 53) | public static void main(String... args) throws RunnerException {
    method run (line 61) | @Benchmark
    method read (line 69) | public VolatileReadData read() throws IOException {
    method getPath (line 74) | protected Path getPath() {
    method setup (line 79) | @Setup(Level.Trial)
    method write (line 94) | protected void write(Path path, int numBytes) {
    method teardown (line 113) | @TearDown(Level.Trial)
    method sizes (line 122) | public int[] sizes() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/cache/N5CacheTest.java
  class N5CacheTest (line 19) | public class N5CacheTest {
    method cacheBackingTest (line 22) | @Test
    method testCopyOnReadPreventsExternalModification (line 110) | @Test
    method testCacheManipulationMethods (line 128) | @Test
    method testChildManagement (line 158) | @Test
    method testRemoveCacheHierarchy (line 190) | @Test
    method testListNonExistentGroupThrows (line 222) | @Test(expected = N5Exception.N5IOException.class)
    method testEmptyCacheInfoBehavior (line 230) | @Test
    method testEmptyJsonDeepCopyThrows (line 242) | @Test(expected = N5Exception.class)
    method testCacheStateTransitions (line 247) | @Test
    class DummyBackingStorage (line 269) | protected static class DummyBackingStorage implements N5JsonCacheableC...
      method DummyBackingStorage (line 279) | public DummyBackingStorage() {
      method getAttributesFromContainer (line 282) | public JsonElement getAttributesFromContainer(final String path, fin...
      method existsFromContainer (line 289) | public boolean existsFromContainer(final String path, final String c...
      method isGroupFromContainer (line 294) | public boolean isGroupFromContainer(final String path) {
      method isDatasetFromContainer (line 299) | public boolean isDatasetFromContainer(final String path) {
      method listFromContainer (line 304) | public String[] listFromContainer(final String path) {
      method isGroupFromAttributes (line 309) | @Override
      method isDatasetFromAttributes (line 315) | @Override
    class DummyNonExistentBackingStorage (line 323) | protected static class DummyNonExistentBackingStorage extends DummyBac...
      method getAttributesFromContainer (line 325) | @Override
      method existsFromContainer (line 331) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/codec/BlockCodecTests.java
  class BlockCodecTests (line 28) | public class BlockCodecTests {
    method testN5BlockCodec (line 50) | @Test
    method testRawBytesBlockCodec (line 67) | @Test
    method testBlockCodecHelper (line 89) | private <T> void testBlockCodecHelper(DatasetAttributes attributes) th...
    method testEmptyBlock (line 113) | @SuppressWarnings("unchecked")
    method testEncodedSizeCalculation (line 139) | @Test
    method createRandomDataBlock (line 181) | private static DataBlock<?> createRandomDataBlock(DataType dataType, i...
    method verifyCompatibleDataType (line 236) | private static void verifyCompatibleDataType(DataType expectedType, Da...
    method assertDataEquals (line 267) | private static void assertDataEquals(DataBlock<?> expected, DataBlock<...
    class TestDatasetAttributes (line 289) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 291) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 297) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/codec/BytesCodecTests.java
  class BytesCodecTests (line 19) | public class BytesCodecTests {
    method setup (line 23) | @BeforeClass
    method testEncodeDecodeBytes (line 28) | @Test
    method concatenatedBytesCodecTest (line 47) | @Test
    class ByteFunctionCodec (line 75) | public static class ByteFunctionCodec implements DataCodec, DataCodecI...
      method ByteFunctionCodec (line 80) | public ByteFunctionCodec( IntUnaryOperator encoder, IntUnaryOperator...
      method getType (line 85) | @Override
      method decode (line 90) | public ReadData decode(ReadData data) {
      method encode (line 94) | public ReadData encode(ReadData data) {
      method create (line 98) | @Override public DataCodec create() {
    class ByteFun (line 104) | private static class ByteFun implements OutputStreamOperator {
      method ByteFun (line 107) | public ByteFun(IntUnaryOperator fun) {
      method apply (line 111) | @Override
    class BitShiftBytesCodec (line 122) | @NameConfig.Name(BitShiftBytesCodec.TYPE)
      method create (line 124) | @Override public DataCodec create() {
      method BitShiftBytesCodec (line 134) | public BitShiftBytesCodec() {
      method BitShiftBytesCodec (line 139) | public BitShiftBytesCodec(int shift) {
      method getType (line 144) | @Override
      method decode (line 150) | @Override
      method encode (line 169) | @Override
      method equals (line 187) | @Override
      method hashCode (line 200) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/codec/ChecksumCodecTests.java
  class ChecksumCodecTests (line 12) | public class ChecksumCodecTests {
    method testCrc32cChecksumCodec (line 14) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/codec/DatasetCodecTests.java
  class DatasetCodecTests (line 9) | public class DatasetCodecTests {
    method testTransposeCodecSimplification (line 11) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/compression/CompressionTypesTest.java
  class CompressionTypesTest (line 18) | public class CompressionTypesTest {
    method setUpBeforeClass (line 23) | @BeforeClass
    method tearDownAfterClass (line 30) | @AfterClass
    method setUp (line 37) | @Before
    method tearDown (line 44) | @After
    method test (line 48) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/demo/AttributePathDemo.java
  class AttributePathDemo (line 18) | public class AttributePathDemo {
    method AttributePathDemo (line 22) | public AttributePathDemo() {
    method main (line 26) | public static void main(String[] args) throws IOException {
    method demo (line 31) | public void demo() throws IOException {
    method simple (line 59) | public void simple(final N5FSWriter n5, final String group) throws IOE...
    method arrays (line 89) | public void arrays(final N5FSWriter n5, final String group) throws IOE...
    method objects (line 109) | @SuppressWarnings("rawtypes")
    method specialChars (line 146) | public void specialChars(final N5FSWriter n5, final String group) thro...
    method removingAttributesAndNulls (line 157) | public void removingAttributesAndNulls(final N5FSWriter n5, final Stri...
    method getRawJson (line 188) | public String getRawJson(final N5Reader n5, final String group) throws...
    method printAsJson (line 195) | public void printAsJson(final Object obj) {
    class Pet (line 199) | class Pet {
      method Pet (line 203) | public Pet(String name, int age) {
      method toString (line 208) | public String toString() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/http/HttpKeyValueAccessTest.java
  class HttpKeyValueAccessTest (line 18) | public class HttpKeyValueAccessTest {
    method testExistsRead (line 24) | @Test
    method testUnsupportedOperations (line 41) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/http/HttpReaderFsWriter.java
  class HttpReaderFsWriter (line 25) | public class HttpReaderFsWriter implements GsonKeyValueN5Writer {
    method HttpReaderFsWriter (line 30) | public <W extends GsonKeyValueN5Writer, R extends GsonKeyValueN5Reader...
    method getAttributesKey (line 61) | @Override public String getAttributesKey() {
    method getVersion (line 66) | @Override public Version getVersion() throws N5Exception {
    method getURI (line 71) | @Override public URI getURI() {
    method getAttribute (line 76) | @Override public <T> T getAttribute(String pathName, String key, Class...
    method getAttribute (line 81) | @Override public <T> T getAttribute(String pathName, String key, Type ...
    method getDatasetAttributes (line 86) | @Override public DatasetAttributes getDatasetAttributes(String pathNam...
    method readChunk (line 91) | @Override public DataBlock<?> readChunk(String pathName, DatasetAttrib...
    method readSerializedBlock (line 96) | @Override public <T> T readSerializedBlock(String dataset, DatasetAttr...
    method getKeyValueAccess (line 101) | @Override public KeyValueAccess getKeyValueAccess() {
    method exists (line 106) | @Override public boolean exists(String pathName) {
    method datasetExists (line 111) | @Override public boolean datasetExists(String pathName) throws N5Excep...
    method list (line 116) | @Override public String[] list(String pathName) throws N5Exception {
    method deepList (line 121) | @Override public String[] deepList(String pathName, Predicate<String> ...
    method deepList (line 126) | @Override public String[] deepList(String pathName) throws N5Exception {
    method deepListDatasets (line 131) | @Override public String[] deepListDatasets(String pathName, Predicate<...
    method deepListDatasets (line 136) | @Override public String[] deepListDatasets(String pathName) throws N5E...
    method deepList (line 141) | @Override public String[] deepList(String pathName, Predicate<String> ...
    method deepList (line 146) | @Override public String[] deepList(String pathName, ExecutorService ex...
    method deepListDatasets (line 151) | @Override public String[] deepListDatasets(String pathName, Predicate<...
    method deepListDatasets (line 156) | @Override public String[] deepListDatasets(String pathName, ExecutorSe...
    method getGson (line 161) | @Override public Gson getGson() {
    method listAttributes (line 166) | @Override public Map<String, Class<?>> listAttributes(String pathName)...
    method getGroupSeparator (line 171) | @Override public String getGroupSeparator() {
    method groupPath (line 176) | @Override public String groupPath(String... nodes) {
    method close (line 181) | @Override public void close() {
    method setAttribute (line 187) | @Override public <T> void setAttribute(String groupPath, String attrib...
    method setAttributes (line 192) | @Override public void setAttributes(String groupPath, Map<String, ?> a...
    method removeAttribute (line 196) | @Override public boolean removeAttribute(String groupPath, String attr...
    method removeAttribute (line 201) | @Override public <T> T removeAttribute(String groupPath, String attrib...
    method removeAttributes (line 206) | @Override public boolean removeAttributes(String groupPath, List<Strin...
    method setDatasetAttributes (line 211) | @Override public void setDatasetAttributes(String datasetPath, Dataset...
    method getConvertedDatasetAttributes (line 216) | @Override public DatasetAttributes getConvertedDatasetAttributes(Datas...
    method setVersion (line 221) | @Override public void setVersion() throws N5Exception {
    method createGroup (line 226) | @Override public void createGroup(String groupPath) throws N5Exception {
    method remove (line 230) | @Override public boolean remove(String groupPath) throws N5Exception {
    method remove (line 235) | @Override public boolean remove() throws N5Exception {
    method createDataset (line 240) | @Override public DatasetAttributes createDataset(String datasetPath, D...
    method writeChunk (line 247) | @Override public <T> void writeChunk(String datasetPath, DatasetAttrib...
    method writeBlock (line 251) | @Override public <T> void writeBlock(String datasetPath, DatasetAttrib...
    method deleteChunk (line 255) | @Override public boolean deleteChunk(String datasetPath, long... gridP...
    method deleteChunks (line 260) | @Override public boolean deleteChunks(String datasetPath, DatasetAttri...
    method writeSerializedBlock (line 265) | @Override public void writeSerializedBlock(Serializable object, String...
    method setVersion (line 270) | @Override public void setVersion(String path) {
    method writeAttributes (line 275) | @Override public void writeAttributes(String normalGroupPath, JsonElem...
    method setAttributes (line 280) | @Override public void setAttributes(String path, JsonElement attribute...
    method writeAttributes (line 285) | @Override public void writeAttributes(String normalGroupPath, Map<Stri...
    method writeChunks (line 290) | @Override public <T> void writeChunks(String datasetPath, DatasetAttri...

FILE: src/test/java/org/janelia/saalfeldlab/n5/http/N5HttpTest.java
  class N5HttpTest (line 28) | @RunWith(RunnerWithHttpServer.class)
    method tempN5Location (line 37) | @Override
    method removeTempWriters (line 51) | @After
    method removeClassTempWriters (line 61) | @AfterClass
    method createN5Writer (line 75) | @Override
    method createN5Reader (line 86) | @Override
    method testVersion (line 95) | @Test
    method testRemoveGroup (line 115) | @Ignore("N5Writer not supported for HTTP")
    method testRemoveAttributes (line 120) | @Ignore("N5Writer not supported for HTTP")
    method testRemoveContainer (line 125) | @Ignore("N5Writer not supported for HTTP")
    method testDelete (line 130) | @Ignore("N5Writer not supported for HTTP")
    method testWriterSeparation (line 135) | @Ignore("N5Writer not supported for HTTP")

FILE: src/test/java/org/janelia/saalfeldlab/n5/http/RunnerWithHttpServer.java
  class RunnerWithHttpServer (line 25) | public class RunnerWithHttpServer extends BlockJUnit4ClassRunner {
    method RunnerWithHttpServer (line 35) | public RunnerWithHttpServer(Class<?> klass) throws Exception {
    method createTmpServerDirectory (line 40) | private static Path createTmpServerDirectory() throws IOException {
    method createTest (line 50) | @Override protected Object createTest() throws Exception {
    method runChild (line 63) | @Override protected void runChild(FrameworkMethod method, RunNotifier ...
    method logHttpOutput (line 95) | private void logHttpOutput() {
    method startHttpServer (line 104) | @Before
    method waitForHttpReady (line 130) | private void waitForHttpReady() throws IOException, InterruptedExcepti...
    method stopHttpServer (line 147) | @After
    method withBeforeClasses (line 158) | @Override protected Statement withBeforeClasses(Statement statement) {
    method withAfterClasses (line 165) | @Override protected Statement withAfterClasses(Statement statement) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/AbstractKeyValueAccessTest.java
  class AbstractKeyValueAccessTest (line 17) | public abstract class AbstractKeyValueAccessTest {
    method newKeyValueAccess (line 19) | protected abstract KeyValueAccess newKeyValueAccess(URI root);
    method newKeyValueAccess (line 21) | protected KeyValueAccess newKeyValueAccess() {
    method tempUri (line 26) | protected abstract URI tempUri();
    method testURIs (line 28) | protected URI[] testURIs(final URI base) {
    method testPathComponents (line 59) | protected String[][] testPathComponents(final URI base) {
    method testComponentsAtLocation (line 84) | protected void testComponentsAtLocation(URI testRoot) {
    method testComposeAtLocation (line 99) | protected void testComposeAtLocation(URI uri) {
    method testComponents (line 119) | @Test
    method testComponentsWithPathSlash (line 125) | @Test
    method testComponentsWithPathEmpty (line 132) | @Test
    method testCompose (line 139) | @Test
    method testComposeWithPathSlash (line 157) | @Test
    method testComposeWithPathEmpty (line 174) | @Test
    method assertComposeEquals (line 191) | public void assertComposeEquals(String reason, KeyValueAccess kva, URI...
    method setUriPath (line 197) | public URI setUriPath(final URI uri, final String path) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/DelegateKeyValueAccess.java
  class DelegateKeyValueAccess (line 11) | public class DelegateKeyValueAccess implements KeyValueAccess {
    method DelegateKeyValueAccess (line 15) | public DelegateKeyValueAccess(KeyValueAccess kva) { this.kva = kva; }
    method components (line 17) | @Override
    method compose (line 22) | @Override
    method compose (line 27) | @Override
    method parent (line 32) | @Override
    method relativize (line 37) | @Override
    method normalize (line 42) | @Override
    method uri (line 47) | @Override
    method exists (line 52) | @Override
    method size (line 57) | @Override
    method isDirectory (line 62) | @Override
    method isFile (line 67) | @Override
    method createReadData (line 72) | @Override
    method write (line 77) | @Override
    method listDirectories (line 82) | @Override
    method list (line 87) | @Override
    method createDirectories (line 92) | @Override
    method delete (line 98) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/FileSystemKeyValueAccessTest.java
  class FileSystemKeyValueAccessTest (line 25) | public class FileSystemKeyValueAccessTest extends AbstractKeyValueAccess...
    method newKeyValueAccess (line 33) | @Override
    method newKeyValueAccess (line 39) | @Override
    method testURIs (line 45) | @Override
    method testComponentsAtLocation (line 62) | @Override
    method getPathFromFileURI (line 86) | private Path getPathFromFileURI(URI fileUri) {
    method testPathComponents (line 101) | @Override
    method tempUri (line 132) | @Override
    method testComposeAtLocation (line 147) | protected void testComposeAtLocation(URI uri) {
    method testComponentsWithPathEmpty (line 166) | @Override
    method testComposeWithPathEmpty (line 175) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/FsLockingValidation.java
  class FsLockingValidation (line 15) | @Command(
    method main (line 44) | public static void main(String[] args) {
    method call (line 48) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/HttpKeyValueAccessTest.java
  class HttpKeyValueAccessTest (line 17) | @RunWith(RunnerWithHttpServer.class)
    method newKeyValueAccess (line 27) | @Override protected KeyValueAccess newKeyValueAccess(URI root) {
    method newKeyValueAccess (line 32) | @Override protected KeyValueAccess newKeyValueAccess() {
    method tempUri (line 37) | @Override protected URI tempUri() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/kva/TrackingKeyValueAccess.java
  class TrackingKeyValueAccess (line 10) | public class TrackingKeyValueAccess extends DelegateKeyValueAccess {
    method TrackingKeyValueAccess (line 17) | public TrackingKeyValueAccess(final KeyValueAccess kva) {
    method isFile (line 21) | @Override
    method createReadData (line 27) | @Override
    class TrackingLazyRead (line 38) | private class TrackingLazyRead implements LazyRead {
      method TrackingLazyRead (line 42) | TrackingLazyRead(final VolatileReadData readData) {
      method size (line 46) | @Override
      method materialize (line 52) | @Override
      method close (line 59) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/locking/JustFileChannels.java
  class JustFileChannels (line 16) | public class JustFileChannels {
    method write (line 47) | static void write(String path, boolean doLock, final Random random) {
    method tryLockWait (line 89) | static FileLock tryLockWait(FileChannel channel, boolean shared) throw...
    method verify (line 109) | static void verify(String path, boolean doLock) {
    method main (line 147) | public static void main(String[] args) throws InterruptedException {

FILE: src/test/java/org/janelia/saalfeldlab/n5/locking/JustFileChannelsThreaded.java
  class JustFileChannelsThreaded (line 7) | public class JustFileChannelsThreaded {
    method main (line 9) | public static void main(String[] args) throws InterruptedException {

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/RangeTests.java
  class RangeTests (line 13) | public class RangeTests {
    method testAggregate (line 15) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/ReadDataTests.java
  class ReadDataTests (line 21) | public class ReadDataTests {
    method testLazyReadData (line 23) | @Test
    method testByteArrayReadData (line 40) | @Test
    method testInputStreamReadData (line 56) | @Test
    method testFileKvaReadData (line 73) | @Test
    method readDataTestHelper (line 96) | private void readDataTestHelper( ReadData readData, int N, int materia...
    method readDataTestEncodeHelper (line 102) | private void readDataTestEncodeHelper( ReadData readData, int N ) thro...
    method sliceTestHelper (line 118) | private void sliceTestHelper( ReadData readData, int N ) throws IOExce...
    class ByteFun (line 140) | private static class ByteFun implements OutputStreamOperator {
      method ByteFun (line 143) | public ByteFun(IntUnaryOperator fun) {
      method apply (line 147) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/prefetch/SliceTrackingLazyReadTests.java
  class SliceTrackingLazyReadTests (line 15) | public class SliceTrackingLazyReadTests {
    method testDefaultSliceTracking (line 17) | @Test
    method testAggregatingSliceTracking (line 57) | @Test
    method createDummyLazyRead (line 132) | private static DummyLazyRead createDummyLazyRead(int size) {
    method assertStoredSlices (line 146) | private static void assertStoredSlices(TestableSliceTracker sliceTrack...
    class TestableDefaultSliceTracker (line 163) | static class TestableDefaultSliceTracker extends EnclosingPrefetchLazy...
      method TestableDefaultSliceTracker (line 164) | public TestableDefaultSliceTracker(LazyRead delegate) {
      method getSlices (line 168) | @Override
    class TestableAggregatingSliceTracker (line 177) | static class TestableAggregatingSliceTracker extends AggregatingPrefet...
      method TestableAggregatingSliceTracker (line 178) | public TestableAggregatingSliceTracker(LazyRead delegate) {
      method getSlices (line 182) | @Override
    type TestableSliceTracker (line 191) | interface TestableSliceTracker {
      method getSlices (line 192) | List<Range> getSlices();
    class DummyLazyRead (line 195) | static class DummyLazyRead implements LazyRead {
      method DummyLazyRead (line 200) | public DummyLazyRead( ReadData data ) {
      method close (line 204) | @Override
      method materialize (line 209) | @Override
      method size (line 216) | @Override
      method getNumMaterializeCalls (line 222) | public int getNumMaterializeCalls() {
      method resetNumMaterializeCalls (line 227) | public void resetNumMaterializeCalls() {

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/prefetch/SlicesTest.java
  class SlicesTest (line 11) | public class SlicesTest {
    method createSlices (line 13) | private List<Range> createSlices(final long[] offsets, final long[] le...
    method testFindContaining (line 21) | @Test
    method testAddSlice (line 81) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/segment/ConcatenatedReadDataTest.java
  class ConcatenatedReadDataTest (line 16) | public class ConcatenatedReadDataTest {
    method fillData (line 20) | @Before
    method createKnownLength (line 37) | private SegmentsAndData createKnownLength() {
    method createUnknownLength (line 55) | private SegmentsAndData createUnknownLength() {
    method createConcatenate (line 102) | private SegmentsAndData createConcatenate() {
    method checkSegmentLocations (line 146) | private static void checkSegmentLocations(final SegmentsAndData segmen...
    method checkSegmentRange (line 153) | private static void checkSegmentRange(final SegmentsAndData data, fina...
    method testConcatenateUnmaterialized (line 165) | @Test(expected = IllegalStateException.class)
    method testConcatenateMaterialize (line 177) | @Test
    method testConcatenateWriteTo (line 188) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/readdata/segment/SegmentTest.java
  class SegmentTest (line 12) | public class SegmentTest {
    method createReadData (line 18) | @Before
    method testWrap (line 29) | @Test
    method testWrapOrder (line 52) | @Test
    method testSlice (line 78) | @Test
    method testSliceSegment (line 100) | @Test
    method testPartialSliceSegment (line 118) | @Test
    method testWrapFully (line 137) | @Test
    method testSliceFullyWrapped (line 156) | @Test
    method testSliceSegmentFullyWrapped (line 177) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/serialization/CodecSerializationTest.java
  class CodecSerializationTest (line 23) | public class CodecSerializationTest {
    method before (line 27) | @Before
    method testCodecSerialization (line 38) | @Test
    method testSerializeCodecArray (line 58) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/DatasetAccessTest.java
  class DatasetAccessTest (line 28) | public class DatasetAccessTest {
    method setup (line 40) | @Before
    method testWriteReadIndividual (line 72) | @Test
    method testWriteReadBulk (line 94) | @Test
    method testDeleteBlock (line 122) | @Test
    method keyExists (line 151) | private boolean keyExists(final PositionValueAccess store, final long[...
    method testDeleteBlocks (line 162) | @Test
    method checkBlock (line 191) | private static void checkBlock(final DataBlock<byte[]> dataBlock, fina...
    method createDataBlock (line 203) | private static DataBlock<byte[]> createDataBlock(int[] size, long[] gr...
    class TestDatasetAttributes (line 210) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 212) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 218) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/NestedGridTest.java
  class NestedGridTest (line 14) | public class NestedGridTest {
    method absPosition1D (line 16) | private static long absPosition1D(final NestedGrid grid, final int sou...
    method testValidateInput (line 20) | @Test
    method testAbsolutePosition (line 26) | @Test
    method testAbsolutePositionChunkSize (line 41) | @Test
    method relPosition1D (line 52) | private static long relPosition1D(final NestedGrid grid, final int sou...
    method testRelativePosition (line 56) | @Test
    method testRelativePositionChunkSize (line 68) | @Test
    method testNd (line 79) | @Test
    method testNestedPositionOrder (line 93) | @Test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/ShardTest.java
  class ShardTest (line 38) | @RunWith(Parameterized.class)
    method createTempN5Writer (line 45) | @Override public N5Writer createTempN5Writer() {
    method tempN5PathName (line 63) | private String tempN5PathName() {
    method data (line 77) | @Parameterized.Parameters(name = "IndexLocation({0}), Index ByteOrder(...
    method removeTempWriters (line 98) | @After
    method getTestAttributes (line 104) | private DatasetAttributes getTestAttributes(long[] dimensions, int[] s...
    method getTestAttributes (line 109) | private DatasetAttributes getTestAttributes(DataType dataType, long[] ...
    method getTestAttributes (line 126) | protected DatasetAttributes getTestAttributes() {
    method writeReadChunksTest (line 131) | @Test
    method ensureKeysExist (line 248) | private void ensureKeysExist(KeyValueAccess kva, URI uri, String dataset,
    method ensureKeysDoNotExist (line 257) | private void ensureKeysDoNotExist(KeyValueAccess kva, URI uri, String ...
    method writeShardDataSizeTest (line 266) | @Test
    method writeReadChunkTest (line 353) | @Test
    method writeReadShardTest (line 394) | @Test
    method numReadsTest (line 473) | public void numReadsTest() {
    method shardExistsTest (line 525) | @Test
    method testPartialReadAggregationBehavior (line 585) | @Test
    method range (line 654) | private int[] range(int N) {

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/TestPositionValueAccess.java
  class TestPositionValueAccess (line 22) | public class TestPositionValueAccess implements PositionValueAccess {
    method get (line 26) | @Override
    method set (line 32) | public void set(final long[] key, final ReadData data) {
    method exists (line 43) | @Override
    method remove (line 48) | @Override
    class Key (line 53) | private static class Key {
      method Key (line 57) | Key(long[] data) {
      method equals (line 62) | @Override
      method hashCode (line 72) | @Override
    class ClosableWrapper (line 79) | private static class ClosableWrapper implements VolatileReadData {
      method ClosableWrapper (line 83) | ClosableWrapper(final ReadData delegate) {
      method length (line 87) | @Override
      method requireLength (line 92) | @Override
      method limit (line 97) | @Override
      method slice (line 102) | @Override
      method slice (line 107) | @Override
      method inputStream (line 112) | @Override
      method allBytes (line 117) | @Override
      method toByteBuffer (line 122) | @Override
      method materialize (line 127) | @Override
      method writeTo (line 133) | @Override
      method prefetch (line 138) | @Override
      method encode (line 143) | @Override
      method close (line 148) | @Override

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/WriteRegionTest.java
  class WriteRegionTest (line 18) | public class WriteRegionTest {
    method testWriteRegion (line 21) | @Test
    method testWriteRegionSharded (line 91) | @Test
    method checkChunk (line 233) | private static void checkChunk(final DataBlock<byte[]> chunk, final bo...
    method checkKey (line 252) | private static void checkKey(PositionValueAccess pva, long[] position,...
    method createDataBlock (line 263) | private static DataBlock<byte[]> createDataBlock(int[] size, long[] gr...
    class TestDatasetAttributes (line 269) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 271) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 277) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/WriteShardTest.java
  class WriteShardTest (line 23) | public class WriteShardTest {
    method main (line 31) | public static void main(String[] args) {
    method testShardDatasetAccess (line 95) | @Test
    method testWriteNullBlockRemovesShard (line 135) | @Test
    method createDataBlock (line 263) | private static DataBlock<int[]> createDataBlock(int[] size, long[] gri...
    class TestDatasetAttributes (line 269) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 271) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 277) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/WriteShardTest2.java
  class WriteShardTest2 (line 15) | public class WriteShardTest2 {
    method main (line 23) | public static void main(String[] args) {
    method createDataBlock (line 90) | private static DataBlock<int[]> createDataBlock(int[] size, long[] gri...
    class TestDatasetAttributes (line 96) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 98) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 104) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/shard/WriteShardTestTruncate.java
  class WriteShardTestTruncate (line 15) | public class WriteShardTestTruncate {
    method main (line 23) | public static void main(String[] args) {
    method createDataBlock (line 98) | private static DataBlock<int[]> createDataBlock(int[] size, long[] gri...
    class TestDatasetAttributes (line 104) | public static class TestDatasetAttributes extends DatasetAttributes {
      method TestDatasetAttributes (line 106) | public TestDatasetAttributes(long[] dimensions, int[] outerBlockSize...
      method getDatasetAccess (line 112) | @Override // to make this accessible for the test

FILE: src/test/java/org/janelia/saalfeldlab/n5/url/UriAttributeTest.java
  class UriAttributeTest (line 25) | public class UriAttributeTest {
    method before (line 41) | @Before
    method testRootAttributes (line 58) | @SuppressWarnings("unchecked")
    method testPathAttributes (line 107) | @Test
    method getAttribute (line 157) | private <T> T getAttribute(
    method getAttribute (line 165) | private <T> T getAttribute(
    method getAttribute (line 175) | private <T> T getAttribute(
    method getAttribute (line 183) | private <T> T getAttribute(
    method testPathObject (line 193) | @Test
    method mapsEqual (line 225) | private <K, V> boolean mapsEqual(final Map<K, V> a, final Map<K, V> b) {
    class TestObject (line 238) | private static class TestObject<T> {
      method TestObject (line 246) | public TestObject(final String type, final String name, final T t) {
      method t (line 253) | public T t() {
      method equals (line 258) | @Override
    class TestDoubles (line 271) | public static class TestDoubles extends TestObject<double[]> {
      method TestDoubles (line 273) | public TestDoubles(final String type, final String name, final doubl...
      method equals (line 278) | @Override
    class TestInts (line 291) | private static class TestInts extends TestObject<int[]> {
      method TestInts (line 293) | public TestInts(final String type, final String name, final int[] t) {
      method equals (line 298) | @Override