[
  {
    "path": ".coveragerc",
    "content": "[run]\nomit =\n    pysradb/filter_attrs.py\n    pysradb/geodb.py\n    pysradb/sradb.py\n    pysradb/taxid2name.py\n    pysradb/utils.py\n\n"
  },
  {
    "path": ".editorconfig",
    "content": "# http://editorconfig.org\n\nroot = true\n\n[*]\nindent_style = space\nindent_size = 4\ntrim_trailing_whitespace = true\ninsert_final_newline = true\ncharset = utf-8\nend_of_line = lf\n\n[*.bat]\nindent_style = tab\nend_of_line = crlf\n\n[LICENSE]\ninsert_final_newline = false\n\n[Makefile]\nindent_style = tab\n"
  },
  {
    "path": ".gitattributes",
    "content": "*.rst linguist-documentation\n*.html linguist-documentation\n*.ipynb linguist-language=python\n\n"
  },
  {
    "path": ".github/FUNDING.yml",
    "content": "# These are supported funding model platforms\n\ngithub: [saketkc]\n"
  },
  {
    "path": ".github/ISSUE_TEMPLATE/bug_report.md",
    "content": "---\nname: Bug report\nabout: Create a report to help us improve\ntitle: \"[BUG]\"\nlabels: bug\nassignees: ''\n\n---\n\n**Describe the bug**\nA clear and concise description of what the bug is.\n\n**To Reproduce**\nSteps to reproduce the behavior:\n`pysradb <command> SRPxxx`\n\n\n**Desktop (please complete the following information):**\n - OS: [e.g. Ubuntu 20.04]\n - Python version [e.g. 3.8]\n\n**Additional context**\nAdd any other context about the problem here.\n"
  },
  {
    "path": ".github/ISSUE_TEMPLATE/feature_request.md",
    "content": "---\nname: Feature request\nabout: Suggest an idea for this project\ntitle: \"[ENH]\"\nlabels: enhancement\nassignees: ''\n\n---\n\n**Is your feature request related to a problem? Please describe.**\nA clear and concise description of what the problem is. Ex. I'm always frustrated when [...]\n\n**Describe the solution you'd like**\nA clear and concise description of what you want to happen.\n"
  },
  {
    "path": ".github/ISSUE_TEMPLATE.md",
    "content": "* pysradb version:\n* Python version:\n* Operating System:\n\n### Description\n\nDescribe what you were trying to get done.\nTell us what happened, what went wrong, and what you expected to happen.\n\n### What I Did\n\n```\nPaste the command(s) you ran and the output.\nIf there was a crash, please include the traceback here.\n```\n"
  },
  {
    "path": ".github/dependabot.yml",
    "content": "# To get started with Dependabot version updates, you'll need to specify which\n# package ecosystems to update and where the package manifests are located.\n# Please see the documentation for all configuration options:\n# https://help.github.com/github/administering-a-repository/configuration-options-for-dependency-updates\n\nversion: 2\nupdates:\n  - package-ecosystem: \"pip\" # See documentation for possible values\n    directory: \"/\" # Location of package manifests\n    schedule:\n      interval: \"daily\"\n"
  },
  {
    "path": ".github/workflows/codeql-analysis.yml",
    "content": "# For most projects, this workflow file will not need changing; you simply need\n# to commit it to your repository.\n#\n# You may wish to alter this file to override the set of languages analyzed,\n# or to provide custom queries or build logic.\n#\n# ******** NOTE ********\n# We have attempted to detect the languages in your repository. Please check\n# the `language` matrix defined below to confirm you have the correct set of\n# supported CodeQL languages.\n#\nname: \"CodeQL\"\n\non:\n  push:\n    branches: [ master ]\n  pull_request:\n    # The branches below must be a subset of the branches above\n    branches: [ master ]\n  schedule:\n    - cron: '35 5 * * 1'\n\njobs:\n  analyze:\n    name: Analyze\n    runs-on: ubuntu-latest\n    permissions:\n      actions: read\n      contents: read\n      security-events: write\n\n    strategy:\n      fail-fast: false\n      matrix:\n        language: [ 'python' ]\n        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python' ]\n        # Learn more:\n        # https://docs.github.com/en/free-pro-team@latest/github/finding-security-vulnerabilities-and-errors-in-your-code/configuring-code-scanning#changing-the-languages-that-are-analyzed\n\n    steps:\n    - name: Checkout repository\n      uses: actions/checkout@v2\n\n    # Initializes the CodeQL tools for scanning.\n    - name: Initialize CodeQL\n      uses: github/codeql-action/init@v1\n      with:\n        languages: ${{ matrix.language }}\n        # If you wish to specify custom queries, you can do so here or in a config file.\n        # By default, queries listed here will override any specified in a config file.\n        # Prefix the list here with \"+\" to use these queries and those in the config file.\n        # queries: ./path/to/local/query, your-org/your-repo/queries@main\n\n    # Autobuild attempts to build any compiled languages  (C/C++, C#, or Java).\n    # If this step fails, then you should remove it and run the build manually (see below)\n    - name: Autobuild\n      uses: github/codeql-action/autobuild@v1\n\n    # ℹ️ Command-line programs to run using the OS shell.\n    # 📚 https://git.io/JvXDl\n\n    # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines\n    #    and modify them (or add more) to build your code if your project\n    #    uses a compiled language\n\n    #- run: |\n    #   make bootstrap\n    #   make release\n\n    - name: Perform CodeQL Analysis\n      uses: github/codeql-action/analyze@v1\n"
  },
  {
    "path": ".github/workflows/publish.yml",
    "content": "name: publish\n\non:\n  release:\n    types: [created]\n\njobs:\n  deploy:\n    runs-on: ubuntu-latest\n    steps:\n    - uses: actions/checkout@v2\n    - name: Set up Python\n      uses: actions/setup-python@v1\n      with:\n        python-version: '3.x'\n    - name: Install dependencies\n      run: |\n        python -m pip install --upgrade pip\n        pip install setuptools wheel twine\n    - name: Build and publish\n      env:\n        TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}\n        TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}\n      run: |\n        python setup.py sdist bdist_wheel\n        twine upload dist/*\n"
  },
  {
    "path": ".github/workflows/pull_request.yml",
    "content": "name: pull_request\n\non: [pull_request]\n\njobs:\n  test:\n    runs-on: ubuntu-latest\n    strategy:\n      matrix:\n        python-version: [3.9, '3.10', '3.11', '3.12', '3.13']\n\n    steps:\n    - uses: actions/checkout@v2\n    - name: Set up Python ${{ matrix.python-version }}\n      uses: actions/setup-python@v1\n      with:\n        python-version: ${{ matrix.python-version }}\n\n    - name: Install dependencies\n      run: |\n        python -m pip install --upgrade pip\n        pip install -U pip\n        pip install -r requirements.txt\n\n    - name: Install Ollama\n      run: |\n        curl -fsSL https://ollama.com/install.sh | sh\n        # Start Ollama service in background\n        ollama serve &\n        # Wait for Ollama to be ready\n        sleep 5\n        # Pull required models for testing\n        ollama pull phi3\n        ollama pull meditron\n        # Verify installation\n        ollama list\n\n    - name: Lint with flake8\n      run: |\n        pip install -U pytest coverage pytest-cov codecov black flake8\n        # stop the build if there are Python syntax errors or undefined names\n        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics\n        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide\n        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics\n        black --check .\n\n    - name: Test with pytest\n      continue-on-error: true\n      run: |\n        pip install --editable \".[enrichment]\"\n        pip install pytest\n        pytest\n        make coverage\n        codecov\n\n  docs:\n    runs-on: ubuntu-latest\n    steps:\n    - uses: actions/checkout@v2\n    - name: Set up Python 3.11\n      uses: actions/setup-python@v1\n      with:\n        python-version: '3.11'\n    - name: Install dependencies\n      run: |\n        python -m pip install --upgrade pip\n        pip install -r requirements.txt\n        pip install \".[enrichment]\"\n        pip install sphinx myst-parser sphinxcontrib-gtagjs ipython numpydoc sphinx-tabs furo nbsphinx sphinx-panels\n    - name: Install Pandoc\n      run: |\n        sudo apt-get update\n        sudo apt-get install -y pandoc\n    - name: Build documentation\n      run: |\n        make docs\n"
  },
  {
    "path": ".github/workflows/push.yml",
    "content": "name: push\n\non: [push]\n\njobs:\n  test:\n    runs-on: ubuntu-latest\n    strategy:\n      matrix:\n        python-version: [3.9, '3.10', '3.11', '3.12', '3.13']\n\n    steps:\n    - uses: actions/checkout@v2\n    - name: Set up Python ${{ matrix.python-version }}\n      uses: actions/setup-python@v1\n      with:\n        python-version: ${{ matrix.python-version }}\n\n    - name: Install dependencies\n      run: |\n        python -m pip install --upgrade pip\n        pip install -U pip\n        pip install -r requirements.txt\n    - name: Lint with flake8\n      run: |\n        pip install -U pytest coverage pytest-cov codecov black flake8\n        # stop the build if there are Python syntax errors or undefined names\n        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics\n        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide\n        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics\n        black --check .\n    - name: Test with pytest\n      continue-on-error: true\n      run: |\n        pip install --editable \".[enrichment]\"\n        pip install pytest\n        pytest\n        make coverage\n        codecov\n\n  docs:\n    runs-on: ubuntu-latest\n    steps:\n    - uses: actions/checkout@v2\n    - name: Set up Python 3.11\n      uses: actions/setup-python@v1\n      with:\n        python-version: '3.11'\n    - name: Install dependencies\n      run: |\n        python -m pip install --upgrade pip\n        pip install -r requirements.txt\n        pip install \".[enrichment]\"\n        pip install sphinx myst-parser sphinxcontrib-gtagjs ipython numpydoc sphinx-tabs furo nbsphinx sphinx-panels\n    - name: Install Pandoc\n      run: |\n        sudo apt-get update\n        sudo apt-get install -y pandoc\n    - name: Build documentation\n      run: |\n        make docs\n    - name: Deploy\n      uses: peaceiris/actions-gh-pages@v3\n      if: github.ref == 'refs/heads/develop'\n      with:\n        github_token: ${{ secrets.GITHUB_TOKEN }}\n        publish_dir: ./docs/_build/html/\n"
  },
  {
    "path": ".gitignore",
    "content": "# Byte-compiled / optimized / DLL files\n__pycache__/\n*.py[cod]\n*$py.class\n\n# C extensions\n*.so\n\n# Distribution / packaging\n.Python\nenv/\nbuild/\ndevelop-eggs/\ndist/\ndownloads/\neggs/\n.eggs/\nlib/\nlib64/\nparts/\nsdist/\nvar/\nwheels/\n*.egg-info/\n.installed.cfg\n*.egg\nMANIFEST\n\n# PyInstaller\n#  Usually these files are written by a python script from a template\n#  before PyInstaller builds the exe, so as to inject date/other infos into it.\n*.manifest\n*.spec\n\n# Installer logs\npip-log.txt\npip-delete-this-directory.txt\n\n# Unit test / coverage reports\nhtmlcov/\n.tox/\n.coverage\n.coverage.*\n.cache\nnosetests.xml\ncoverage.xml\n*.cover\n.hypothesis/\n.pytest_cache/\n\n# Translations\n*.mo\n*.pot\n\n# Django stuff:\n*.log\nlocal_settings.py\ndb.sqlite3\n\n# Flask stuff:\ninstance/\n.webassets-cache\n\n# Scrapy stuff:\n.scrapy\n\n# Sphinx documentation\ndocs/_build/\n\n# PyBuilder\ntarget/\n\n# Jupyter Notebook\n.ipynb_checkpoints\n\n# pyenv\n.python-version\n\n# celery beat schedule file\ncelerybeat-schedule\n\n# SageMath parsed files\n*.sage.py\n\n# dotenv\n.env\n\n# Environments\n.env\n.venv\nenv/\nvenv/\nENV/\nenv.bak/\nvenv.bak/\n\n# Spyder project settings\n.spyderproject\n.spyproject\n\n# Rope project settings\n.ropeproject\n\n# mkdocs documentation\n/site\n\n# mypy\n.mypy_cache/\n*.sqlite\n*.sqlite.gz\n\ngeoweb_downloads/\n"
  },
  {
    "path": "AUTHORS.md",
    "content": "# Credits\n\n## Contributors\n\n-   [Boshen Yan](https://github.com/bscrow)\n-   [Maarten van der Sande](https://github.com/Maarten-vd-Sande)\n-   [Dibya Gautam](https://github.com/dibyaaaaax)\n-   [Marius van den Beek](https://github.com/mvdbeek)\n-   [Devang Thakkar](https://github.com/DevangThakkar)\n\n## Maintainer\n\n-   Saket Choudhary \\<<saketkc@gmail.com>\\>\n"
  },
  {
    "path": "CITATION.cff",
    "content": "cff-version: 1.2.0\nmessage: \"If you use this software, please cite it as below.\"\nauthors:\n- family-names: \"Choudhary\"\n  given-names: \"Saket\"\n  orcid: \"https://orcid.org/0000-0001-5202-7633\"\ntitle: \"pysradb\"\nversion: 2.4.1\ndoi: 10.12688/f1000research.18676.1\ndate-released: 2025-09-28\nurl: \"https://github.com/saketkc/pysradb\"\n"
  },
  {
    "path": "CODE_OF_CONDUCT.md",
    "content": "# Contributor Covenant Code of Conduct\n\n## Our Pledge\n\nIn the interest of fostering an open and welcoming environment, we as\ncontributors and maintainers pledge to making participation in our project and\nour community a harassment-free experience for everyone, regardless of age, body\nsize, disability, ethnicity, sex characteristics, gender identity and expression,\nlevel of experience, education, socio-economic status, nationality, personal\nappearance, race, religion, or sexual identity and orientation.\n\n## Our Standards\n\nExamples of behavior that contributes to creating a positive environment\ninclude:\n\n* Using welcoming and inclusive language\n* Being respectful of differing viewpoints and experiences\n* Gracefully accepting constructive criticism\n* Focusing on what is best for the community\n* Showing empathy towards other community members\n\nExamples of unacceptable behavior by participants include:\n\n* The use of sexualized language or imagery and unwelcome sexual attention or\n advances\n* Trolling, insulting/derogatory comments, and personal or political attacks\n* Public or private harassment\n* Publishing others' private information, such as a physical or electronic\n address, without explicit permission\n* Other conduct which could reasonably be considered inappropriate in a\n professional setting\n\n## Our Responsibilities\n\nProject maintainers are responsible for clarifying the standards of acceptable\nbehavior and are expected to take appropriate and fair corrective action in\nresponse to any instances of unacceptable behavior.\n\nProject maintainers have the right and responsibility to remove, edit, or\nreject comments, commits, code, wiki edits, issues, and other contributions\nthat are not aligned to this Code of Conduct, or to ban temporarily or\npermanently any contributor for other behaviors that they deem inappropriate,\nthreatening, offensive, or harmful.\n\n## Scope\n\nThis Code of Conduct applies both within project spaces and in public spaces\nwhen an individual is representing the project or its community. Examples of\nrepresenting a project or community include using an official project e-mail\naddress, posting via an official social media account, or acting as an appointed\nrepresentative at an online or offline event. Representation of a project may be\nfurther defined and clarified by project maintainers.\n\n## Enforcement\n\nInstances of abusive, harassing, or otherwise unacceptable behavior may be\nreported by contacting the project team at saketkc@gmail.com. All\ncomplaints will be reviewed and investigated and will result in a response that\nis deemed necessary and appropriate to the circumstances. The project team is\nobligated to maintain confidentiality with regard to the reporter of an incident.\nFurther details of specific enforcement policies may be posted separately.\n\nProject maintainers who do not follow or enforce the Code of Conduct in good\nfaith may face temporary or permanent repercussions as determined by other\nmembers of the project's leadership.\n\n## Attribution\n\nThis Code of Conduct is adapted from the [Contributor Covenant][homepage], version 1.4,\navailable at https://www.contributor-covenant.org/version/1/4/code-of-conduct.html\n\n[homepage]: https://www.contributor-covenant.org\n\nFor answers to common questions about this code of conduct, see\nhttps://www.contributor-covenant.org/faq\n"
  },
  {
    "path": "CONTRIBUTING.md",
    "content": "# Contributing\n\nContributions are welcome, and they are greatly appreciated! Every\nlittle bit helps, and credit will always be given.\n\nYou can contribute in many ways:\n\n## Types of Contributions\n\n### Report Bugs\n\nReport bugs at <https://github.com/saketkc/pysradb/issues>.\n\nIf you are reporting a bug, please include:\n\n-   Your operating system name and version.\n-   Any details about your local setup that might be helpful in\n    troubleshooting.\n-   Detailed steps to reproduce the bug.\n\n### Fix Bugs\n\nLook through the GitHub issues for bugs. Anything tagged with \\\"bug\\\"\nand \\\"help wanted\\\" is open to whoever wants to implement it.\n\n### Implement Features\n\nLook through the GitHub issues for features. Anything tagged with\n\\\"enhancement\\\" and \\\"help wanted\\\" is open to whoever wants to\nimplement it.\n\n### Write Documentation\n\npysradb could always use more documentation, whether as part of the\nofficial pysradb docs, in docstrings, or even on the web in blog posts,\narticles, and such.\n\n### Submit Feedback\n\nThe best way to send feedback is to file an issue at\n<https://github.com/saketkc/pysradb/issues>.\n\nIf you are proposing a feature:\n\n-   Explain in detail how it would work.\n-   Keep the scope as narrow as possible, to make it easier to\n    implement.\n-   Remember that this is a volunteer-driven project, and that\n    contributions are welcome :)\n\n## Get Started!\n\nReady to contribute? Here\\'s how to set up [pysradb]{.title-ref} for\nlocal development.\n\n1.  Fork the [pysradb]{.title-ref} repo on GitHub.\n\n2.  Clone your fork locally:\n\n    ``` shell\n    $ git clone git@github.com:your_name_here/pysradb.git\n    ```\n\n3.  Install your local copy into a virtualenv. Assuming you have\n    virtualenvwrapper installed, this is how you set up your fork for\n    local development (If python \\--version is less than 3.0, run [\\$\n    mkvirtualenv pysradb \\--python=py3]{.title-ref} instead):\n\n    ``` shell\n    $ mkvirtualenv pysradb\n    $ cd pysradb/\n    $ python setup.py develop\n    ```\n\n4.  Create a branch for local development:\n\n    ``` shell\n    $ git checkout -b name-of-your-bugfix-or-feature\n    ```\n\n    Now you can make your changes locally.\n\n5.  When you\\'re done making changes, check that your changes pass\n    flake8 and the tests, including testing other Python versions with\n    tox:\n\n    ``` shell\n    $ flake8 pysradb tests\n    $ python setup.py test or py.test\n    $ tox\n    ```\n\n    To get flake8 and tox, just pip install them into your virtualenv.\n\n6.  Commit your changes and push your branch to GitHub:\n\n    ``` shell\n    $ git add .\n    $ git commit -m \"Your detailed description of your changes.\"\n    $ git push origin name-of-your-bugfix-or-feature\n    ```\n\n7.  Submit a pull request through the GitHub website.\n\n## Pull Request Guidelines\n\nBefore you submit a pull request, check that it meets these guidelines:\n\n1.  The pull request should include tests.\n2.  If the pull request adds functionality, the docs should be updated.\n    Put your new functionality into a function with a docstring, and add\n    the feature to the list in README.rst.\n3.  The pull request should work for Python 2.7, 3.4, 3.5 and 3.6, and\n    for PyPy. Make sure that the tests pass for all supported Python\n    versions.\n\n## Tips\n\nTo run a subset of tests:\n\n``` shell\n$ py.test tests.test_pysradb\n```\n\n## Deploying\n\nA reminder for the maintainers on how to deploy. Make sure all your\nchanges are committed (including an entry in HISTORY.rst). Then run:\n\n``` shell\n$ bumpversion patch # possible: major / minor / patch\n$ git push\n$ git push --tags\n```\n\nCI will then deploy to PyPI if tests pass.\n"
  },
  {
    "path": "HISTORY.md",
    "content": "# History\n\n# 3.0.0 (Unreleased) - BREAKING CHANGES\n\n## Removal of legacy SQLite support\n\n**All local SQLite database support has been removed.** This is a major breaking change and was long overdue.\n\n- **Removed**: `SRAdb`, `GEOdb`, and `BASEdb` classes\n- **Removed**: `download_sradb_file()` and `download_geodb_file()` functions\n- **Removed**: Files: `sradb.py`, `geodb.py`, `basedb.py`\n- **Why**: Legacy local SQLite databases are outdated and rarely used. SRAweb (API-based) provides better, real-time data with no maintenance overhead.\n\n\n# 2.5.1 (2025-10-29)\n\n- Add prjna support in doi-to-identifiers [#249](https://github.com/saketkc/pysradb/pull/249) \n\n# 2.5.0 (2025-10-19)\n\n- Add pmid/doi-to-gse/srp conversion [#246](https://github.com/saketkc/pysradb/pull/246).\n\n# 2.4.1 (2025-09-27)\n\n- Add gse-to-pmid conversion [#241](https://github.com/saketkc/pysradb/pull/244).\n\n# 2.4.0 (2025-09-27)\n\n- Add sra-to-pmid conversion [#241](https://github.com/saketkc/pysradb/pull/241). Thanks [@andrewdavidsmith](https://github.com/andrewdavidsmith) for the idea.\n\n# 2.3.0 (2025-08-24)\n\n- Download logic improvements: remoted requests-ftp as requirement\n- Fix for handling missing metadata keys [#223](https://github.com/saketkc/pysradb/pull/223). Thanks [@andrewdavidsmith](https://github.com/andrewdavidsmith)\n\n# 2.2.2 (2024-10-03)\n\n- Fix for handling ENA urls for paired end data\n\n# 2.2.1 (2024-08-21)\n\n- Fix for handling ENA urls\n- Migrated to pyproject.toml\n\n\n# 2.2.0 (2023-09-17)\n\n- Add support for Biosamples and bioproject [#199](https://github.com/saketkc/pysradb/pull/198)\n- Use retmode xml for Geo search [#200](https://github.com/saketkc/pysradb/pull/200)\n- Documentation fixes\n\n## 2.1.0 (2023-05-16)\n\n-   Fix for [gse-to-srp] returning unrequested GSEs [#186](https://github.com/saketkc/pysradb/issues/190)\n-   Fix for [download] using [public_urls]\n-   Fix for [gsm-to-srx] returning false positives [#165](https://github.com/saketkc/pysradb/issues/165)\n-   Fix for delimiter not being consistent when metadata is printed on\n    terminal [#147](https://github.com/saketkc/pysradb/issues/147)\n-   ENA search is currently broken because of an API change\n\n## 2.0.2 (2023-04-09)\n\n-   Fix for [gse-to-srp] to handle cases where a project is\n    missing but SRXs are returned [#186](https://github.com/saketkc/pysradb/issues/186)\n-   Fix gse-to-gsm [#187](https://github.com/saketkc/pysradb/issues/187)\n\n## 2.0.1 (2023-03-18)\n\n-   Fix for [pysradb download] - using [public_url]\n-   Fix for SRX -\\> SRR and related conversions [#183](https://github.com/saketkc/pysradb/pull/183)\n\n## 2.0.0 (2023-02-23)\n\n-   BREAKING change: Overhaul of how urls and associated metadata are\n    returned (not backward compatible); all column names are lower cased\n    by default\n-   Fix extra space in \\\"organism_taxid\\\" column\n-   Added support for Experiment attributes [#89](https://github.com/saketkc/pysradb/issues/89#issuecomment-1439319532)\n\n## 1.4.2 (06-17-2022)\n\n-   Fix ENA fastq fetching [#163](https://github.com/saketkc/pysradb/issues/163)\n\n## 1.4.1 (06-04-2022)\n\n-   Fix for fetching alternative URLs\n\n## 1.4.0 (06-04-2022)\n\n-   Added ability to fetch alternative URLs (GCP/AWS) for metadata\n    [#161](https://github.com/saketkc/pysradb/issues/161)\n-   Fix for xmldict 0.13.0 no longer defaulting to OrderedDict [#159](https://github.com/saketkc/pysradb/pull/159)\n-   Fix for missing experiment model and description in metadata [#160](https://github.com/saketkc/pysradb/issues/160)\n\n## 1.3.0 (02-18-2022)\n\n-   Add [study_title] to [\\--detailed] flag\n    ([#152](https://github.com/saketkc/pysradb/issues/152))\n-   Fix [KeyError] in [metadata] where some new\n    IDs do not have any metadata\n    ([#151](https://github.com/saketkc/pysradb/issues/151))\n\n## 1.2.0 (01-10-2022)\n\n-   Do not exit if a qeury returns no hits ([#149](https://github.com/saketkc/pysradb/pull/149))\n\n## 1.1.0 (12-12-2021)\n\n-   Fixed [gsm-to-gse] failure\n    ([#128](https://github.com/saketkc/pysradb/pull/128))\n-   Fixed case sensitivity bug for ENA search\n    ([#144](https://github.com/saketkc/pysradb/pull/144))\n-   Fixed publication date bug for search\n    ([#146](https://github.com/saketkc/pysradb/pull/146))\n-   Added support for downloading data from GEO [pysradb dowload -g\n    GSE]\n    ([#129](https://github.com/saketkc/pysradb/pull/129))\n\n## 1.0.1 (01-10-2021)\n\n-   Dropped Python 3.6 since pandas 1.2 is not supported\n\n## 1.0.0 (01-09-2021)\n\n-   Retired `metadb` and `SRAdb` based search through CLI - everything\n    defaults to `SRAweb`\n-   `SRAweb` now supports\n    [search](https://saket-choudhary.me/pysradb/quickstart.html#search)\n-   [N/A] is now replaced with [pd.NA]\n-   Two new fields in \\`\\--detailed\\`: [instrument_model]\n    and [instrument_model_desc]\n    [#75](https://github.com/saketkc/pysradb/issues/75)\n-   Updated documentation\n\n## 0.11.1 (09-18-2020)\n\n-   [library_layout] is now outputted in metadata #56\n-   [-detailed] unifies columns for ENA fastq links instead\n    of appending \\_x/\\_y #59\n-   bugfix for parsing namespace in xml outputs #65\n-   XML errors from NCBI are now handled more gracefully #69\n-   Documentation and dependency updates\n\n## 0.11.0 (09-04-2020)\n\n-   [pysradb download] now supports multiple threads for\n    paralle downloads\n-   [pysradb download] also supports ultra fast downloads of\n    FASTQs from ENA using aspera-client\n\n## 0.10.3 (03-26-2020)\n\n-   Added test cases for SRAweb\n-   API limit exceeding errors are automagically handled\n-   Bug fixes for GSE \\<=\\> SRR\n-   Bug fix for metadata - supports multiple SRPs\n\nContributors\n\n-   Dibya Gautam\n-   Marius van den Beek\n\n## 0.10.2 (02-05-2020)\n\n-   Bug fix: Handle API-rate limit exceeding =\\> Retries\n-   Enhancement: \\'Alternatives\\' URLs are now part of\n    [\\--detailed]\n\n## 0.10.1 (02-04-2020)\n\n-   Bug fix: Handle Python3.6 for capture_output in subprocess.run\n\n## 0.10.0 (01-31-2020)\n\n-   All the subcommands (srx-to-srr, srx-to-srs) will now print\n    additional columns where the first two columns represent the\n    relevant conversion\n-   Fixed a bug where for fetching entries with single efetch record\n\n## 0.9.9 (01-15-2020)\n\n-   Major fix: some SRRs would go missing as the experiment dict was\n    being created only once per SRR (See #15)\n-   Features: More detailed metadata by default in the SRAweb mode\n-   See notebook: <https://colab.research.google.com/drive/1C60V->\n\n## 0.9.7 (01-20-2020)\n\n-   Feature: instrument, run size and total spots are now printed in the\n    metadata by default (SRAweb mode only)\n-   Issue: Fixed an issue with srapath failing on SRP. srapath is now\n    run on individual SRRs.\n\n## 0.9.6 (07-20-2019)\n\n-   Introduced [SRAweb] to perform queries over the web if\n    the SQLite is missing or does not contain the relevant record.\n\n## 0.9.0 (02-27-2019)\n\n### Others\n\n-   This release completely changes the command line interface replacing\n    click with argparse ([#3](https://github.com/saketkc/pysradb/pull/3))\n-   Removed Python 2 comptaible stale code\n\n## 0.8.0 (02-26-2019)\n\n### New methods/functionality\n\n-   \\`srr-to-gsm\\`: convert SRR to GSM\n-   SRAmetadb.sqlite.gz file is deleted by default after extraction\n-   When SRAmetadb is not found a confirmation is seeked before\n    downloading\n-   Confirmation option before SRA downloads\n\n### Bugfix\n\n-   download() works with wget\n\n### Others\n\n-   [\\--out_dir] is now [out-dir]\n\n## 0.7.1 (02-18-2019)\n\nImportant: Python2 is no longer supported. Please consider moving to\nPython3.\n\n### Bugfix\n\n-   Included docs in the index whihch were missed out in the previous\n    release\n\n## 0.7.0 (02-08-2019)\n\n### New methods/functionality\n\n-   \\`gsm-to-srr\\`: convert GSM to SRR\n-   \\`gsm-to-srx\\`: convert GSM to SRX\n-   \\`gsm-to-gse\\`: convert GSM to GSE\n\n### Renamed methods\n\nThe following commad line options have been renamed and the changes are\nnot compatible with 0.6.0 release:\n\n-   [sra-metadata] -\\> [metadata].\n-   [sra-search] -\\> [search].\n-   [srametadb] -\\> [metadb].\n\n## 0.6.0 (12-25-2018)\n\n### Bugfix\n\n-   Fixed bugs introduced in 0.5.0 with API changes where multiple\n    redundant columns were output in [sra-metadata]\n\n### New methods/functionality\n\n-   [download] now allows piped inputs\n\n## 0.5.0 (12-24-2018)\n\n### New methods/functionality\n\n-   Support for filtering by SRX Id for SRA downloads.\n-   \\`srr_to_srx\\`: Convert SRR to SRX/SRP\n-   \\`srp_to_srx\\`: Convert SRP to SRX\n-   Stripped down [sra-metadata] to give minimal information\n-   Added [\\--assay], [\\--desc],\n    [\\--detailed] flag for [sra-metadata]\n-   Improved table printing on terminal\n\n## 0.4.2 (12-16-2018)\n\n### Bugfix\n\n-   Fixed unicode error in tests for Python2\n\n## 0.4.0 (12-12-2018)\n\n### New methods/functionality\n\n-   Added a new [BASEdb] class to handle common database\n    connections\n-   Initial support for GEOmetadb through GEOdb class\n-   Initial support or a command line interface:\n    -   download Download SRA project (SRPnnnn)\n    -   gse-metadata Fetch metadata for GEO ID (GSEnnnn)\n    -   gse-to-gsm Get GSM(s) for GSE\n    -   gsm-metadata Fetch metadata for GSM ID (GSMnnnn)\n    -   sra-metadata Fetch metadata for SRA project (SRPnnnn)\n-   Added three separate notebooks for SRAdb, GEOdb, CLI usage\n\n## 0.3.0 (12-05-2018)\n\n### New methods/functionality\n\n-   [sample_attribute] and\n    [experiment_attribute] are now included by default in\n    the df returned by [sra_metadata()]\n-   [expand_sample_attribute_columns: expand metadata dataframe based on\n    attributes in \\`sample_attribute] column\n-   New methods to guess cell/tissue/strain:\n    [guess_cell_type()]/[guess_tissue_type()]/[guess_strain_type()]\n-   Improved README and usage instructions\n\n## 0.2.2 (12-03-2018)\n\n### New methods/functionality\n\n-   [search_sra()] allows full text search on SRA metadata.\n\n## 0.2.0 (12-03-2018)\n\n### Renamed methods\n\nThe following methods have been renamed and the changes are not\ncompatible with 0.1.0 release:\n\n-   [get_query()] -\\> [query()].\n-   [sra_convert()] -\\> [sra_metadata()].\n-   [get_table_counts()] -\\> [all_row_counts()].\n\n### New methods/functionality\n\n-   [download_sradb_file()] makes fetching [SRAmetadb.sqlite] file easy; wget is no longer required.\n-   [ftp] protocol is now supported besides [fsp] and hence [aspera-client] is now optional. We however, strongly recommend [aspera-client] for faster downloads.\n\n### Bug fixes\n\n-   Silenced [SettingWithCopyWarning] by excplicitly doing\n    operations on a copy of the dataframe instead of the original.\n\nBesides these, all methods now follow a [numpydoc]\ncompatible documentation.\n\n## 0.1.0 (12-01-2018)\n\n-   First release on PyPI.\n"
  },
  {
    "path": "LICENSE",
    "content": "BSD 3-Clause License\n\nCopyright (c) 2020-2023, Saket Choudhary\nAll rights reserved.\n\nRedistribution and use in source and binary forms, with or without\nmodification, are permitted provided that the following conditions are met:\n\n* Redistributions of source code must retain the above copyright notice, this\n  list of conditions and the following disclaimer.\n\n* Redistributions in binary form must reproduce the above copyright notice,\n  this list of conditions and the following disclaimer in the documentation\n  and/or other materials provided with the distribution.\n\n* Neither the name of the copyright holder nor the names of its\n  contributors may be used to endorse or promote products derived from\n  this software without specific prior written permission.\n\nTHIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\nAND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\nIMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE\nDISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE\nFOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL\nDAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR\nSERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER\nCAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,\nOR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\nOF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n"
  },
  {
    "path": "MANIFEST.in",
    "content": "include AUTHORS.md\ninclude CONTRIBUTING.md\ninclude HISTORY.md\ninclude LICENSE\ninclude README.md\ninclude requirements.txt\n\nrecursive-include tests *\nrecursive-exclude * __pycache__\nrecursive-exclude * *.py[co]\nrecursive-exclude * *.sqlite\nrecursive-exclude * *.sqlite.gz\n\nrecursive-include docs *.md conf.py Makefile make.bat *.jpg *.png *.gif *.rst\n"
  },
  {
    "path": "Makefile",
    "content": ".PHONY: clean clean-test clean-pyc clean-build docs help\n.DEFAULT_GOAL := help\n\ndefine BROWSER_PYSCRIPT\nimport os, webbrowser, sys\n\ntry:\n\tfrom urllib import pathname2url\nexcept:\n\tfrom urllib.request import pathname2url\n\nwebbrowser.open(\"file://\" + pathname2url(os.path.abspath(sys.argv[1])))\nendef\nexport BROWSER_PYSCRIPT\n\ndefine PRINT_HELP_PYSCRIPT\nimport re, sys\n\nfor line in sys.stdin:\n\tmatch = re.match(r'^([a-zA-Z_-]+):.*?## (.*)$$', line)\n\tif match:\n\t\ttarget, help = match.groups()\n\t\tprint(\"%-20s %s\" % (target, help))\nendef\nexport PRINT_HELP_PYSCRIPT\n\nBROWSER := python -c \"$$BROWSER_PYSCRIPT\"\n\nhelp:\n\t@python -c \"$$PRINT_HELP_PYSCRIPT\" < $(MAKEFILE_LIST)\n\nclean: clean-build clean-pyc clean-test ## remove all build, test, coverage and Python artifacts\n\nclean-build: ## remove build artifacts\n\trm -fr build/\n\trm -fr dist/\n\trm -fr .eggs/\n\tfind . -name '*.egg-info' -exec rm -fr {} +\n\tfind . -name '*.egg' -exec rm -f {} +\n\nclean-pyc: ## remove Python file artifacts\n\tfind . -name '*.pyc' -exec rm -f {} +\n\tfind . -name '*.pyo' -exec rm -f {} +\n\tfind . -name '*~' -exec rm -f {} +\n\tfind . -name '__pycache__' -exec rm -fr {} +\n\nclean-test: ## remove test and coverage artifacts\n\trm -fr .tox/\n\trm -f .coverage\n\trm -fr htmlcov/\n\trm -fr .pytest_cache\n\nlint: ## check style with flake8\n\tflake8 pysradb tests\n\ntest: ## run tests quickly with the default Python\n\tpytest -s -v tests\n\ntest-all: ## run tests on every Python version with tox\n\ttox\n\ncoverage: ## check code coverage quickly with the default Python\n\tcoverage run --source pysradb -m pytest\n\tcoverage report -m\n\tcoverage html\n\ndocs: ## generate Sphinx HTML documentation, including API docs\n\trm -f docs/pysradb.rst\n\trm -f docs/modules.rst\n\tsphinx-apidoc -o docs/ pysradb\n\t$(MAKE) -C docs clean\n\t$(MAKE) -C docs html\n\nservedocs: docs ## compile the docs watching for changes\n\t#watchmedo shell-command -p '*.rst' -c '$(MAKE) -C docs html' -R -D .\n\twatchmedo shell-command -p '*.md|*.rst' -c '$(MAKE) -C docs html' -R -D .\n\nrelease: dist ## package and upload a release\n\tpython -m build\n\ttwine upload dist/*\n\ndist: clean ## builds source and wheel package\n\tpython -m build\n\tls -l dist\n\ninstall: clean ## install the package to the active Python's site-packages\n\tpip install -e .\n"
  },
  {
    "path": "README.md",
    "content": "# A Python package for retrieving metadata from SRA/ENA/GEO\n\n[![image](https://img.shields.io/pypi/v/pysradb.svg?style=flat-square)](https://pypi.python.org/pypi/pysradb)\n[![image](https://anaconda.org/bioconda/pysradb/badges/version.svg)](https://anaconda.org/bioconda/pysradb/badges/version.svg)\n[![image](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat-square)](http://bioconda.github.io/recipes/pysradb/README.html)\n[![image](https://static.pepy.tech/personalized-badge/pysradb?period=month&units=international_system&left_color=black&right_color=brightgreen&left_text=Downloads/month)](https://pepy.tech/project/pysradb)\n[![image](https://zenodo.org/badge/159590788.svg)](https://zenodo.org/badge/latestdoi/159590788)\n[![image](https://github.com/saketkc/pysradb/workflows/push/badge.svg)](https://github.com/saketkc/pysradb/actions)\n\n## Documentation\n\n<https://saketkc.github.io/pysradb>\n\n## CLI Usage\n\n`pysradb` supports command line usage. See\n[CLI](https://saket-choudhary.me/pysradb/cmdline.html) instructions or\n[quickstart\nguide](https://www.saket-choudhary.me/pysradb/quickstart.html).\n\n    $ pysradb\n    usage: pysradb [-h] [--version] [--citation]\n                   {metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs,geo-matrix,srp-to-pmid,gse-to-pmid,pmid-to-gse,pmid-to-srp,pmc-to-identifiers,pmid-to-identifiers,doi-to-gse,doi-to-srp,doi-to-identifiers}\n                   ...\n\n    pysradb: Query NGS metadata and data from NCBI Sequence Read Archive.\n    version: 3.0.0\n    Citation: 10.12688/f1000research.18676.1\n\n    options:\n      -h, --help            show this help message and exit\n      --version             show program's version number and exit\n      --citation            how to cite\n\n    subcommands:\n      {metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs,geo-matrix,srp-to-pmid,gse-to-pmid,pmid-to-gse,pmid-to-srp,pmc-to-identifiers,pmid-to-identifiers,doi-to-gse,doi-to-srp,doi-to-identifiers}\n        metadata            Fetch metadata for SRA project (SRPnnnn)\n        download            Download SRA project (SRPnnnn)\n        search              Search SRA/ENA for matching text\n        gse-to-gsm          Get GSM for a GSE\n        gse-to-srp          Get SRP for a GSE\n        gsm-to-gse          Get GSE for a GSM\n        gsm-to-srp          Get SRP for a GSM\n        gsm-to-srr          Get SRR for a GSM\n        gsm-to-srs          Get SRS for a GSM\n        gsm-to-srx          Get SRX for a GSM\n        srp-to-gse          Get GSE for a SRP\n        srp-to-srr          Get SRR for a SRP\n        srp-to-srs          Get SRS for a SRP\n        srp-to-srx          Get SRX for a SRP\n        srr-to-gsm          Get GSM for a SRR\n        srr-to-srp          Get SRP for a SRR\n        srr-to-srs          Get SRS for a SRR\n        srr-to-srx          Get SRX for a SRR\n        srs-to-gsm          Get GSM for a SRS\n        srs-to-srx          Get SRX for a SRS\n        srx-to-srp          Get SRP for a SRX\n        srx-to-srr          Get SRR for a SRX\n        srx-to-srs          Get SRS for a SRX\n        geo-matrix          Download and parse GEO Matrix files\n        srp-to-pmid         Get PMIDs for SRP accessions\n        gse-to-pmid         Get PMIDs for GSE accessions\n        pmid-to-gse         Get GSE accessions from PMIDs\n        pmid-to-srp         Get SRP accessions from PMIDs\n        pmc-to-identifiers  Extract database identifiers from PMC articles\n        pmid-to-identifiers\n                            Extract database identifiers from PubMed articles\n        doi-to-gse          Get GSE accessions from DOIs\n        doi-to-srp          Get SRP accessions from DOIs\n        doi-to-identifiers  Extract database identifiers from articles via DOI\n\n## Quickstart\n\nA Google Colaboratory version of most used commands are available in\nthis [Colab\nNotebook](https://colab.research.google.com/drive/1C60V-jkcNZiaCra_V5iEyFs318jgVoUR)\n. Note that this requires only an active internet connection (no\nadditional downloads are made).\n\nThe following notebooks document all the possible features of\n\\`pysradb\\`:\n\n1.  [Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/01.Python-API_demo.ipynb)\n2.  [Downloading datasets from SRA - command\n    line](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/02.Commandline_download.ipynb)\n3.  [Parallely download multiple datasets - Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/03.ParallelDownload.ipynb)\n4.  [Converting SRA-to-fastq - command line (requires\n    conda)](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/04.SRA_to_fastq_conda.ipynb)\n5.  [Downloading subsets of a project - Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/05.Downloading_subsets_of_a_project.ipynb)\n6.  [Metadata for multiple\n    SRPs](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/06.Multiple_SRPs.ipynb)\n7.  [Searching\n    SRA/GEO/ENA](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/07.Query_Search.ipynb)\n8. [Extracting identifiers from PMC/DOI](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/08.PMC_DOI_Identifiers.ipynb)\n9. [Metadata Enrichment with LLMs](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/09.Metadata_enrichment.ipynb)\n\n## Installation\n\nTo install stable version using \\`pip\\`:\n\n```bash\npip install pysradb\n```\n\nAlternatively, if you use conda:\n\n```bash\nconda install -c bioconda pysradb\n```\n\nThis step will install all the dependencies. If you have an existing\nenvironment with a lot of pre-installed packages, conda might be\n[slow](https://github.com/bioconda/bioconda-recipes/issues/13774).\nPlease consider creating a new enviroment for `pysradb`:\n\n```bash\nconda create -c bioconda -n pysradb PYTHON=3.13 pysradb\n```\n\n### Dependencies\n\n    pandas\n    requests\n    tqdm\n    xmltodict\n\n### Installing pysradb in development mode\n\n    git clone https://github.com/saketkc/pysradb.git\n    cd pysradb && pip install -r requirements.txt\n    pip install -e .\n\n## Using pysradb\n\n### Obtaining SRA metadata\n\n    $ pysradb metadata SRP000941 | head\n\n    study_accession experiment_accession experiment_title                                                                                                                 experiment_desc                                                                                                                  organism_taxid  organism_name library_strategy library_source  library_selection sample_accession sample_title instrument                    total_spots total_size    run_accession run_total_spots run_total_bases\n    SRP000941       SRX056722                                                                         Reference Epigenome: ChIP-Seq Analysis of H3K27ac in hESC H1 Cells                                                               Reference Epigenome: ChIP-Seq Analysis of H3K27ac in hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC    ChIP            SRS184466                              Illumina HiSeq 2000    26900401     531654480   SRR179707     26900401         807012030\n    SRP000941       SRX027889                                                                            Reference Epigenome: ChIP-Seq Analysis of H2AK5ac in hESC Cells                                                                  Reference Epigenome: ChIP-Seq Analysis of H2AK5ac in hESC Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC    ChIP            SRS116481                      Illumina Genome Analyzer II    37528590     779578968   SRR067978     37528590        1351029240\n    SRP000941       SRX027888                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS116483                      Illumina Genome Analyzer II    13603127    3232309537   SRR067977     13603127         489712572\n    SRP000941       SRX027887                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS116562                      Illumina Genome Analyzer II    22430523     506327844   SRR067976     22430523         807498828\n    SRP000941       SRX027886                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS116560                      Illumina Genome Analyzer II    15342951     301720436   SRR067975     15342951         552346236\n    SRP000941       SRX027885                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS116482                      Illumina Genome Analyzer II    39725232     851429082   SRR067974     39725232        1430108352\n    SRP000941       SRX027884                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS116481                      Illumina Genome Analyzer II    32633277     544478483   SRR067973     32633277        1174797972\n    SRP000941       SRX027883                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS004118                      Illumina Genome Analyzer II    22150965    3262293717   SRR067972      9357767         336879612\n    SRP000941       SRX027883                                                                                     Reference Epigenome: ChIP-Seq Input from hESC H1 Cells                                                                           Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606            Homo sapiens       ChIP-Seq           GENOMIC  RANDOM            SRS004118                      Illumina Genome Analyzer II    22150965    3262293717   SRR067971     12793198         460555128\n\n### Obtaining detailed SRA metadata\n\n    $ pysradb metadata SRP075720 --detailed | head\n\n    study_accession experiment_accession experiment_title                                  experiment_desc                                   organism_taxid  organism_name library_strategy library_source  library_selection sample_accession sample_title instrument           total_spots total_size run_accession run_total_spots run_total_bases\n    SRP075720       SRX1800476            GSM2177569: Kcng4_2la_H9; Mus musculus; RNA-Seq   GSM2177569: Kcng4_2la_H9; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467643                    Illumina HiSeq 2500  2547148      97658407  SRR3587912    2547148         127357400\n    SRP075720       SRX1800475            GSM2177568: Kcng4_2la_H8; Mus musculus; RNA-Seq   GSM2177568: Kcng4_2la_H8; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467642                    Illumina HiSeq 2500  2676053     101904264  SRR3587911    2676053         133802650\n    SRP075720       SRX1800474            GSM2177567: Kcng4_2la_H7; Mus musculus; RNA-Seq   GSM2177567: Kcng4_2la_H7; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467641                    Illumina HiSeq 2500  1603567      61729014  SRR3587910    1603567          80178350\n    SRP075720       SRX1800473            GSM2177566: Kcng4_2la_H6; Mus musculus; RNA-Seq   GSM2177566: Kcng4_2la_H6; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467640                    Illumina HiSeq 2500  2498920      94977329  SRR3587909    2498920         124946000\n    SRP075720       SRX1800472            GSM2177565: Kcng4_2la_H5; Mus musculus; RNA-Seq   GSM2177565: Kcng4_2la_H5; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467639                    Illumina HiSeq 2500  2226670      83473957  SRR3587908    2226670         111333500\n    SRP075720       SRX1800471            GSM2177564: Kcng4_2la_H4; Mus musculus; RNA-Seq   GSM2177564: Kcng4_2la_H4; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467638                    Illumina HiSeq 2500  2269546      87486278  SRR3587907    2269546         113477300\n    SRP075720       SRX1800470            GSM2177563: Kcng4_2la_H3; Mus musculus; RNA-Seq   GSM2177563: Kcng4_2la_H3; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467636                    Illumina HiSeq 2500  2333284      88669838  SRR3587906    2333284         116664200\n    SRP075720       SRX1800469            GSM2177562: Kcng4_2la_H2; Mus musculus; RNA-Seq   GSM2177562: Kcng4_2la_H2; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467637                    Illumina HiSeq 2500  2071159      79689296  SRR3587905    2071159         103557950\n    SRP075720       SRX1800468            GSM2177561: Kcng4_2la_H1; Mus musculus; RNA-Seq   GSM2177561: Kcng4_2la_H1; Mus musculus; RNA-Seq  10090           Mus musculus  RNA-Seq          TRANSCRIPTOMIC  cDNA              SRS1467635                    Illumina HiSeq 2500  2321657      89307894  SRR3587904    2321657         116082850\n\n### Enriching metadata via CLI\n\nEnrich metadata with standardized biological attributes using biomedical-specialized LLMs through the command line:\n\n```bash\n# Basic enrichment with default backend (Meditron)\n$ pysradb metadata GSE286254 --detailed --enrich\n\n# Using OpenBioLLM-8B (larger, trained on 500k+ biomedical entries)\n$ pysradb metadata GSE286254 --detailed --enrich --enrich-backend ollama/openbiollm-8b\n```\n\nAvailable biomedical backends:\n- `ollama/meditron` (default, 7B - optimized for medical text)\n- `ollama/openbiollm-8b` (8B - trained on 500k+ biomedical entries, superior biomedical performance)\n\nThis returns the original metadata plus 9 enriched columns:\n- `guessed_organ`\n- `guessed_tissue`\n- `guessed_anatomical_system`\n- `guessed_cell_type`\n- `guessed_disease`\n- `guessed_sex`\n- `guessed_development_stage`\n- `guessed_assay`\n- `guessed_organism`\n\nFor more details on enrichment features, prerequisites, and Python API usage, see the [Enriching metadata](#enriching-metadata) section below.\n\n### Converting SRP to GSE\n\n    $ pysradb srp-to-gse SRP075720\n\n    study_accession study_alias\n    SRP075720       GSE81903\n\n### Converting GSM to SRP\n\n    $ pysradb gsm-to-srp GSM2177186\n\n    experiment_alias study_accession\n    GSM2177186       SRP075720\n\n### Converting GSM to GSE\n\n    $ pysradb gsm-to-gse GSM2177186\n\n    experiment_alias study_alias\n    GSM2177186       GSE81903\n\n### Converting GSM to SRX\n\n    $ pysradb gsm-to-srx GSM2177186\n\n    experiment_alias experiment_accession\n    GSM2177186       SRX1800089\n\n### Converting GSM to SRR\n\n    $ pysradb gsm-to-srr GSM2177186\n\n    experiment_alias run_accession\n    GSM2177186       SRR3587529\n\n### Converting SRP to PMID\n\n    $ pysradb srp-to-pmid SRP045778\n\n    srp_accession bioproject pmid\n    SRP045778     PRJNA257197 27373336\n\n### Converting GSE to PMID\n\n    $ pysradb gse-to-pmid GSE253406\n\n    gse_accession pmid\n    GSE253406     39528918\n\n### Extracting identifiers from PMC/DOI\n\nExtract database identifiers (GSE, PRJNA, SRP, etc.) from PubMed Central articles or DOIs. This feature automatically converts between GSE and SRP identifiers even when papers only mention one type!\n\n#### Get all identifiers from a PMID\n\n    $ pysradb pmid-to-identifiers 39528918\n\n    pmid      pmc_id       gse_ids     prjna_ids    srp_ids\n    39528918  PMC10802650  GSE253406   PRJNA1058002 SRP484103\n\n#### Get only GSE or SRP from PMID\n\n    $ pysradb pmid-to-gse 39528918\n\n    pmid      pmc_id       gse_ids\n    39528918  PMC10802650  GSE253406\n\n    $ pysradb pmid-to-srp 39528918\n\n    pmid      pmc_id       srp_ids\n    39528918  PMC10802650  SRP484103\n\n\n#### Extract from DOI\n\n    $ pysradb doi-to-identifiers 10.12688/f1000research.18676.1\n\n    doi                                 pmid      pmc_id      gse_ids  srp_ids\n    10.12688/f1000research.18676.1      30873266  PMC6411813  GSE...   SRP...\n\n#### Extract from PMC ID\n\n    $ pysradb pmc-to-identifiers PMC10802650\n\n    pmc_id       gse_ids     prjna_ids    srp_ids\n    PMC10802650  GSE253406   PRJNA1058002 SRP484103\n\n\n### Enriching metadata\n\nExtract standardized biological metadata from SRA/GEO datasets using LLMs.\n\n#### Quickstart\n\n```python\nfrom pysradb import SRAweb\n\nclient = SRAweb()\n\ndf = client.metadata(\"GSE286254\", detailed=True, enrich=True)\n\n# Returns original + 9 enriched columns (might not always be complete):\n# guessed_organ, guessed_tissue, guessed_anatomical_system,\n# guessed_cell_type, guessed_disease, guessed_sex,\n# guessed_development_stage, guessed_assay, guessed_organism\n```\n\n\n#### Prerequisites\n\nInstall Ollama: https://ollama.ai\n\n```bash\n# Default backend (recommended)\nollama pull meditron\n\n# Or use OpenBioLLM-8B for better biomedical performance\nollama pull openbiollm-8b\n```\n\n#### Advanced Usage\n\n```python\n# Use OpenBioLLM-8B backend (trained on 500k+ biomedical entries)\nclient = SRAweb()\ndf = client.metadata(\"GSE286254\", detailed=True, enrich=True,\n                enrich_backend=\"ollama/openbiollm-8b\")\n\n# Manual enrichment with custom settings\nfrom pysradb.metadata_enrichment import create_metadata_extractor, load_ontology_reference\n\n# LLM-based extraction with default backend (meditron)\nextractor_llm = create_metadata_extractor(method=\"llm\")\ndf_enriched = extractor_llm.enrich_dataframe(df, prefix=\"guessed_\")\n\n# LLM-based extraction with specific biomedical backend\nextractor_bio = create_metadata_extractor(method=\"llm\", backend=\"ollama/openbiollm-8b\")\ndf_enriched = extractor_bio.enrich_dataframe(df, prefix=\"guessed_\")\n\n# Embedding-based extraction (faster, offline)\nontology_ref = load_ontology_reference()\nextractor_emb = create_metadata_extractor(\n    method=\"embedding\",\n    model=\"FremyCompany/BioLORD-2023\",\n    reference_categories=ontology_ref\n)\ndf_enriched = extractor_emb.enrich_dataframe(df, prefix=\"guessed_\")\n```\n\nSee [Notebook 09](notebooks/09.Metadata_Enrichment_with_LLMs.ipynb) for detailed examples.\n\n\n### Downloading supplementary files from GEO\n\n    $ pysradb download -g GSE161707\n\n### Downloading an entire SRA/ENA project (multithreaded)\n\n`pysradb` makes it super easy to download datasets from SRA in parallel:\nUsing 8 threads to download:\n\n    $ pysradb download -y -t 8 --out-dir ./pysradb_downloads -p SRP063852\n\nDownloads are organized by `SRP/SRX/SRR` mimicking the hierarchy of SRA\nprojects.\n\n## Publication\n\n> [pysradb: A Python package to query next-generation sequencing\n> metadata and data from NCBI Sequence Read\n> Archive](https://f1000research.com/articles/8-532/v1)\n>\n> Presentation slides from BOSC (ISMB-ECCB) 2019:\n> <https://f1000research.com/slides/8-1183>\n\n## Citation\n\nChoudhary, Saket. \\\"pysradb: A Python Package to Query next-Generation\nSequencing Metadata and Data from NCBI Sequence Read Archive.\\\"\nF1000Research, vol. 8, F1000 (Faculty of 1000 Ltd), Apr. 2019, p. 532\n(<https://f1000research.com/articles/8-532/v1>)\n\n    @article{Choudhary2019,\n    doi = {10.12688/f1000research.18676.1},\n    url = {https://doi.org/10.12688/f1000research.18676.1},\n    year = {2019},\n    month = apr,\n    publisher = {F1000 (Faculty of 1000 Ltd)},\n    volume = {8},\n    pages = {532},\n    author = {Saket Choudhary},\n    title = {pysradb: A {P}ython package to query next-generation sequencing metadata and data from {NCBI} {S}equence {R}ead {A}rchive},\n    journal = {F1000Research}\n    }\n\nZenodo archive: <https://zenodo.org/badge/latestdoi/159590788>\n\nZenodo DOI: 10.5281/zenodo.2306881\n\n## Questions?\n\nOpen an [issue](https://github.com/saketkc/pysradb/issues).\n"
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    "content": "# Minimal makefile for Sphinx documentation\n#\n\n# You can set these variables from the command line.\nSPHINXOPTS    =\nSPHINXBUILD   = python -msphinx\nSPHINXPROJ    = pysradb\nSOURCEDIR     = .\nBUILDDIR      = _build\n\n# Put it first so that \"make\" without argument is like \"make help\".\nhelp:\n\t@$(SPHINXBUILD) -M help \"$(SOURCEDIR)\" \"$(BUILDDIR)\" $(SPHINXOPTS) $(O)\n\n.PHONY: help Makefile\n\n# Catch-all target: route all unknown targets to Sphinx using the new\n# \"make mode\" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).\n%: Makefile\n\t@$(SPHINXBUILD) -M $@ \"$(SOURCEDIR)\" \"$(BUILDDIR)\" $(SPHINXOPTS) $(O)\n"
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    "content": "// Add copy button to code blocks\ndocument.addEventListener('DOMContentLoaded', function() {\n    // SVG icon for clipboard\n    const clipboardIcon = `<svg xmlns=\"http://www.w3.org/2000/svg\" width=\"16\" height=\"16\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"2\" stroke-linecap=\"round\" stroke-linejoin=\"round\"><path d=\"M16 4h2a2 2 0 0 1 2 2v14a2 2 0 0 1-2 2H6a2 2 0 0 1-2-2V6a2 2 0 0 1 2-2h2\"></path><rect x=\"8\" y=\"2\" width=\"8\" height=\"4\" rx=\"1\" ry=\"1\"></rect></svg>`;\n\n    // SVG icon for checkmark\n    const checkmarkIcon = `<svg xmlns=\"http://www.w3.org/2000/svg\" width=\"16\" height=\"16\" viewBox=\"0 0 24 24\" fill=\"none\" stroke=\"currentColor\" stroke-width=\"3\" stroke-linecap=\"round\" stroke-linejoin=\"round\"><polyline points=\"20 6 9 17 4 12\"></polyline></svg>`;\n\n    // Find all code input blocks (from notebooks and regular code blocks)\n    // Strategy:\n    // 1. For notebooks: explicitly target pre tags inside input_area\n    // 2. For regular docs: target all highlight divs, then filter with skip conditions\n    let codeBlocks = document.querySelectorAll('div.input_area > div.highlight > pre');\n\n    // Also get regular documentation code blocks\n    const docBlocks = document.querySelectorAll('div.highlight > pre');\n\n    // Combine and deduplicate\n    codeBlocks = Array.from(codeBlocks).concat(\n        Array.from(docBlocks).filter(block => {\n            // Skip if already in notebook input_area\n            if (block.closest('div.input_area')) return false;\n            // Skip if in prompt or output\n            if (block.closest('.prompt')) return false;\n            if (block.closest('.nboutput')) return false;\n            if (block.closest('.output_area')) return false;\n            return true;\n        })\n    );\n\n    codeBlocks.forEach(function(codeBlock) {\n        // Don't add button if already present\n        if (codeBlock.querySelector('.copy-button') || codeBlock.parentElement.querySelector('.copy-button')) {\n            return;\n        }\n\n        // Create copy button\n        const button = document.createElement('button');\n        button.className = 'copy-button';\n        button.innerHTML = clipboardIcon;\n        button.title = 'Copy code to clipboard';\n\n        // Style the button\n        button.style.cssText = `\n            position: absolute;\n            top: 0.5rem;\n            right: 0.5rem;\n            padding: 0.4rem;\n            background-color: rgba(0, 0, 0, 0.3);\n            color: white;\n            border: 1px solid rgba(255, 255, 255, 0.3);\n            border-radius: 0.25rem;\n            cursor: pointer;\n            display: flex;\n            align-items: center;\n            justify-content: center;\n            z-index: 1;\n            transition: all 0.2s ease;\n            width: 28px;\n            height: 28px;\n            padding: 0;\n        `;\n\n        // Add hover effect\n        button.onmouseover = function() {\n            this.style.backgroundColor = 'rgba(0, 0, 0, 0.5)';\n        };\n        button.onmouseout = function() {\n            this.style.backgroundColor = 'rgba(0, 0, 0, 0.3)';\n        };\n\n        // Make pre block relative positioned\n        codeBlock.style.position = 'relative';\n\n        // Add click event\n        button.addEventListener('click', function() {\n            const code = codeBlock.querySelector('code');\n            const text = code ? code.textContent : codeBlock.textContent;\n\n            // Copy to clipboard\n            navigator.clipboard.writeText(text).then(function() {\n                // Change button icon and color temporarily\n                const originalHTML = button.innerHTML;\n                button.innerHTML = checkmarkIcon;\n                button.style.backgroundColor = 'rgba(34, 197, 94, 0.7)';\n\n                setTimeout(function() {\n                    button.innerHTML = originalHTML;\n                    button.style.backgroundColor = 'rgba(0, 0, 0, 0.3)';\n                }, 2000);\n            }).catch(function(err) {\n                console.error('Failed to copy:', err);\n            });\n        });\n\n        // Append button to code block\n        codeBlock.appendChild(button);\n    });\n});\n"
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    "path": "docs/_static/custom.css",
    "content": "/* Override Pygments code block background color for light mode */\n.highlight {\n  background: #f5f5f5 !important;\n}\n\n/* Ensure code block background uses our color */\n.highlight pre {\n  background: #f5f5f5 !important;\n}\n\n/* Override inline code highlighting */\n.highlighttable {\n  background: #f5f5f5 !important;\n}\n\n.highlighttable td.linenos {\n  background: #f5f5f5 !important;\n}\n\n/* Dark mode overrides */\n[data-theme=\"dark\"] .highlight {\n  background: #1e293b !important;\n}\n\n[data-theme=\"dark\"] .highlight pre {\n  background: #1e293b !important;\n}\n\n[data-theme=\"dark\"] .highlighttable {\n  background: #1e293b !important;\n}\n\n[data-theme=\"dark\"] .highlighttable td.linenos {\n  background: #1e293b !important;\n}\n"
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  {
    "path": "docs/authors.md",
    "content": "# Credits\n\n## Contributors\n\n-   [Boshen Yan](https://github.com/bscrow)\n-   [Maarten van der Sande](https://github.com/Maarten-vd-Sande)\n-   [Dibya Gautam](https://github.com/dibyaaaaax)\n-   [Marius van den Beek](https://github.com/mvdbeek)\n-   [Devang Thakkar](https://github.com/DevangThakkar)\n\n## Maintainer\n\n-   Saket Choudhary \\<<saketkc@gmail.com>\\>\n"
  },
  {
    "path": "docs/case_studies.md",
    "content": "# Case Studies \n\n## Case Study 1\n\nConsider a scenario where somone is interested in searching for\nsingle-cell RNA-seq datasets. In particular, the interest is in studying\nretina:\n\n    $ pysradb search --query \"single-cell rna-seq retina\"\n\n     study_accession experiment_accession    experiment_title    sample_taxon_id sample_scientific_name  experiment_library_strategy experiment_library_source   experiment_library_selection    sample_accession    sample_alias    experiment_instrument_model pool_member_spots   run_1_size  run_1_accession run_1_total_spots   run_1_total_bases\n     SRP299803   SRX9756769  GSM4995565: scATAC_Retina_WT; Mus musculus; ATAC-seq    10090   Mus musculus    ATAC-seq    GENOMIC other   SRS7946094  GSM4995565  Illumina NovaSeq 6000   55435867    2637580797  SRR13329759 55435867    6874047508\n     SRP299803   SRX9756768  GSM4995564: scRNA_Retina_VSX2SEKO_Rep2; Mus musculus; RNA-Seq   10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7946093  GSM4995564  Illumina NovaSeq 6000   96123725    4107807391  SRR13329758 96123725    12688331700\n     SRP299803   SRX9756767  GSM4995563: scRNA_Retina_VSX2SEKO_Rep1; Mus musculus; RNA-Seq   10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7946092  GSM4995563  Illumina NovaSeq 6000   94345783    4056010488  SRR13329757 94345783    12453643356\n     SRP299803   SRX9756766  GSM4995562: scRNA_Retina_WT_Rep2; Mus musculus; RNA-Seq 10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7946091  GSM4995562  Illumina NovaSeq 6000   99487074    4240172698  SRR13329756 99487074    13132293768\n     SRP299803   SRX9756765  GSM4995561: scRNA_Retina_WT_Rep1; Mus musculus; RNA-Seq 10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7946090  GSM4995561  Illumina NovaSeq 6000   88048461    3817540828  SRR13329755 88048461    11622396852\n     SRP257758   SRX9537754  GSM4916438: Pou4f2-tdTomato/+ E17.5 scRNA-seq; Mus musculus; RNA-Seq    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7743995  GSM4916438  Illumina HiSeq 2500 364683840   8246658699  SRR13091939 364683840   32456861760\n     SRP257758   SRX9537753  GSM4916437: Atoh7-zsGreen/lacZ E17.5 scRNA-seq; Mus musculus; RNA-Seq   10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7743994  GSM4916437  Illumina HiSeq 2500 530456067   11895864680 SRR13091938 530456067   47210589963\n     SRP257758   SRX9537752  GSM4916436: Atoh7-zsGreen/+ E17.5 scRNA-seq; Mus musculus; RNA-Seq  10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7743993  GSM4916436  Illumina HiSeq 2500 389849416   8671923722  SRR13091937 389849416   34696598024\n     SRP257758   SRX9537751  GSM4916435: Atoh7-zsGreen/lacZ E14.5 scRNA-seq; Mus musculus; RNA-Seq   10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7743992  GSM4916435  Illumina HiSeq 2500 328878355   7875737709  SRR13091936 328878355   29270173595\n     SRP257758   SRX9537750  GSM4916434: Atoh7-zsGreen/+ E14.5 scRNA-seq; Mus musculus; RNA-Seq  10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS7743991  GSM4916434  Illumina HiSeq 2500 522040155   12760941656 SRR13091935 522040155   46461573795\n     ERP118072   ERX3614517  NextSeq 500 sequencing; 3' mRNA-seq of protrusions and cell bodies of BJ, PC-3M, RPE-1, U-87 and WM-266.4 cells 9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  Oligo-dT    ERS3920269  SAMEA6120013    NextSeq 500 5818488 43355751    ERR3619129  1457318 109897743\n     ERP118072   ERX3614516  NextSeq 500 sequencing; 3' mRNA-seq of protrusions and cell bodies of BJ, PC-3M, RPE-1, U-87 and WM-266.4 cells 9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  Oligo-dT    ERS3920268  SAMEA6120012    NextSeq 500 5422441 40645479    ERR3619125  1359663 102468758\n     SRP288715   SRX9369597  RPE1_SS119_p10  9606    Homo sapiens    OTHER   GENOMIC other   SRS7591452  RPE1_SS119_p10.bam  Illumina HiSeq 2000 5062938 88426773    SRR12904705 5062938 202517520\n     SRP288715   SRX9369596  RPE1_SS119_p0   9606    Homo sapiens    OTHER   GENOMIC other   SRS7591451  RPE1_SS119_p0.bam   Illumina HiSeq 2000 978835  19219630    SRR12904706 978835  39153400\n     SRP288715   SRX9369595  RPE1_SS111_p10  9606    Homo sapiens    OTHER   GENOMIC other   SRS7591450  RPE1_SS111_p10.bam  Illumina HiSeq 2000 6205827 108129733   SRR12904707 6205827 248233080\n     SRP288715   SRX9369594  RPE1_SS111_p0   9606    Homo sapiens    OTHER   GENOMIC other   SRS7591449  RPE1_SS111_p0.bam   Illumina HiSeq 2000 928703  18488436    SRR12904708 928703  37148120\n     SRP288715   SRX9369593  RPE1_SS51_p10   9606    Homo sapiens    OTHER   GENOMIC other   SRS7591448  RPE1_SS51_p10.bam   Illumina HiSeq 2000 6088168 106065537   SRR12904709 6088168 243526720\n     SRP288715   SRX9369592  RPE1_SS51_p0    9606    Homo sapiens    OTHER   GENOMIC other   SRS7591447  RPE1_SS51_p0.bam    Illumina HiSeq 2000 1624227 30610200    SRR12904710 1624227 64969080\n     SRP288715   SRX9369591  RPE1_SS48_p10   9606    Homo sapiens    OTHER   GENOMIC other   SRS7591446  RPE1_SS48_p10.bam   Illumina HiSeq 2000 8117881 139408135   SRR12904711 8117881 324715240\n     SRP288715   SRX9369590  RPE1_SS48_p0    9606    Homo sapiens    OTHER   GENOMIC other   SRS7591445  RPE1_SS48_p0.bam    Illumina HiSeq 2000 776140  15821200    SRR12904712 776140  31045600\n\nBy default search returns first 20 hits. `SRP299803` seems like a\nproject of interest. However the information outputted by the `search`\ncommand is pretty limited. We want to look up more detailed information\nabout this project:\n\n    $ pysradb metadata SRP299803 | head\n     study_accession experiment_accession    experiment_title    experiment_desc organism_taxid  organism_name   library_name    library_strategy    library_source  library_selection   library_layout  sample_accession    sample_title    instrument  instrument_model    instrument_model_desc   total_spots total_size  run_accession   run_total_spots run_total_bases\n     SRP299803   SRX9756769  GSM4995565: scATAC_Retina_WT; Mus musculus; ATAC-seq    GSM4995565: scATAC_Retina_WT; Mus musculus; ATAC-seq    10090   Mus musculus        ATAC-seq    GENOMIC other   PAIRED  SRS7946094      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    55435867    2637580797  SRR13329759 55435867    6874047508\n     SRP299803   SRX9756768  GSM4995564: scRNA_Retina_VSX2SEKO_Rep2; Mus musculus; RNA-Seq   GSM4995564: scRNA_Retina_VSX2SEKO_Rep2; Mus musculus; RNA-Seq   10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946093      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    96123725    4107807391  SRR13329758 96123725    12688331700\n     SRP299803   SRX9756767  GSM4995563: scRNA_Retina_VSX2SEKO_Rep1; Mus musculus; RNA-Seq   GSM4995563: scRNA_Retina_VSX2SEKO_Rep1; Mus musculus; RNA-Seq   10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946092      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    94345783    4056010488  SRR13329757 94345783    12453643356\n     SRP299803   SRX9756766  GSM4995562: scRNA_Retina_WT_Rep2; Mus musculus; RNA-Seq GSM4995562: scRNA_Retina_WT_Rep2; Mus musculus; RNA-Seq 10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946091      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    99487074    4240172698  SRR13329756 99487074    13132293768\n     SRP299803   SRX9756765  GSM4995561: scRNA_Retina_WT_Rep1; Mus musculus; RNA-Seq GSM4995561: scRNA_Retina_WT_Rep1; Mus musculus; RNA-Seq 10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946090      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    88048461    3817540828  SRR13329755 88048461    11622396852\n\nIt is also possible to get more detailed information using the\n`--detailed` flag:\n\n    $ pysradb metadata SRP075720 --detailed\n\n     run_accession   study_accession experiment_accession    experiment_title    experiment_desc organism_taxid  organism_name   library_name    library_strategy    library_source  library_selection   library_layout  sample_accession    sample_title    instrument  instrument_model    instrument_model_desc   total_spots total_size  run_total_spots run_total_bases run_alias   sra_url experiment_alias    source_name strain background   genotype    tissue/cell type    molecule subtype    ena_fastq_http  ena_fastq_http_1    ena_fastq_http_2    ena_fastq_ftp   ena_fastq_ftp_1 ena_fastq_ftp_2\n     SRR13329759 SRP299803   SRX9756769  GSM4995565: scATAC_Retina_WT; Mus musculus; ATAC-seq    GSM4995565: scATAC_Retina_WT; Mus musculus; ATAC-seq    10090   Mus musculus        ATAC-seq    GENOMIC other   PAIRED  SRS7946094      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    55435867    2637580797  55435867    6874047508  GSM4995565_r1   https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/013017/SRR13329759   GSM4995565  wild type_retina    C57BL/6 wild type   retina          http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/059/SRR13329759/SRR13329759_1.fastq.gz   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/059/SRR13329759/SRR13329759_2.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/059/SRR13329759/SRR13329759_1.fastq.gz    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/059/SRR13329759/SRR13329759_2.fastq.gz\n     SRR13329758 SRP299803   SRX9756768  GSM4995564: scRNA_Retina_VSX2SEKO_Rep2; Mus musculus; RNA-Seq   GSM4995564: scRNA_Retina_VSX2SEKO_Rep2; Mus musculus; RNA-Seq   10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946093      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    96123725    4107807391  96123725    12688331700 GSM4995564_r1   https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/013017/SRR13329758   GSM4995564  Vsx2SE Δ/Δ_retina   C57BL/6 Vsx2SE {delta}/{delta}  retina  3' RNA      http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/058/SRR13329758/SRR13329758_1.fastq.gz   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/058/SRR13329758/SRR13329758_2.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/058/SRR13329758/SRR13329758_1.fastq.gz    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/058/SRR13329758/SRR13329758_2.fastq.gz\n     SRR13329757 SRP299803   SRX9756767  GSM4995563: scRNA_Retina_VSX2SEKO_Rep1; Mus musculus; RNA-Seq   GSM4995563: scRNA_Retina_VSX2SEKO_Rep1; Mus musculus; RNA-Seq   10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946092      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    94345783    4056010488  94345783    12453643356 GSM4995563_r1   https://sra-download.ncbi.nlm.nih.gov/traces/sra79/SRR/013017/SRR13329757   GSM4995563  Vsx2SE Δ/Δ_retina   C57BL/6 Vsx2SE {delta}/{delta}  retina  3' RNA      http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/057/SRR13329757/SRR13329757_1.fastq.gz   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/057/SRR13329757/SRR13329757_2.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/057/SRR13329757/SRR13329757_1.fastq.gz    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/057/SRR13329757/SRR13329757_2.fastq.gz\n     SRR13329756 SRP299803   SRX9756766  GSM4995562: scRNA_Retina_WT_Rep2; Mus musculus; RNA-Seq GSM4995562: scRNA_Retina_WT_Rep2; Mus musculus; RNA-Seq 10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946091      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    99487074    4240172698  99487074    13132293768 GSM4995562_r1   https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/013017/SRR13329756   GSM4995562  wild type_retina    C57BL/6 wild type   retina  3' RNA      http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/056/SRR13329756/SRR13329756_1.fastq.gz   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/056/SRR13329756/SRR13329756_2.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/056/SRR13329756/SRR13329756_1.fastq.gz    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/056/SRR13329756/SRR13329756_2.fastq.gz\n     SRR13329755 SRP299803   SRX9756765  GSM4995561: scRNA_Retina_WT_Rep1; Mus musculus; RNA-Seq GSM4995561: scRNA_Retina_WT_Rep1; Mus musculus; RNA-Seq 10090   Mus musculus        RNA-Seq TRANSCRIPTOMIC  cDNA    PAIRED  SRS7946090      Illumina NovaSeq 6000   Illumina NovaSeq 6000   ILLUMINA    88048461    3817540828  88048461    11622396852 GSM4995561_r1   https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/013017/SRR13329755   GSM4995561  wild type_retina    C57BL/6 wild type   retina  3' RNA      http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/055/SRR13329755/SRR13329755_1.fastq.gz   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR133/055/SRR13329755/SRR13329755_2.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/055/SRR13329755/SRR13329755_1.fastq.gz    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR133/055/SRR13329755/SRR13329755_2.fastq.gz\n\nHaving made sure this dataset is indeed of interest, we want to save\nsome work and see if the processed dataset has been made available on\nGEO by the authors:\n\n    $ pysradb srp-to-gse SRP299803\n\n    study_accession  study_alias\n    SRP299803        GSE164044\n\nSo indeed a GEO project exists for this SRA dataset.\n\nNotice, that the GEO information was also visible in the\n`metadata --detailed` operation. Assume we were in posession of the GSM\nid of one of the experiments to start off with, say `GSE4995565`.\nStarting from this GSM id, we want to get the following information:\n\n-   SRP id of the project\n-   GSE id of the project\n-   SRX id of the experiment\n-   SRR id(s) corresponding to the experiment\n\nGet SRP id:\n\n    $ pysradb gsm-to-srp GSM4995565\n\n    experiment_alias study_accession\n    GSM4995565       SRP299803\n\nGet GSE id:\n\n    $ pysradb gsm-to-gse GSM4995565\n\n    experiment_alias study_alias\n    GSM4995565       GSE164044\n\nGet SRX id:\n\n    $ pysradb gsm-to-srx GSM4995565\n\n    experiment_alias experiment_accession\n    GSM4995565       SRX9756769\n\nGetting SRR id(s):\n\n    $ pysradb gsm-to-srr GSM4995565\n\n    experiment_alias run_accession\n    GSM4995565       SRR13329759\n\n## Case Study 2\n\nOur first case study included metadata search. Next, we explore\ndownloading datasets.\n\nWe have a SRP id to start off with: `SRP000941`. We want to quickly\ncheckout its contents:\n\n    $ pysradb metadata SRP000941 --detailed| head\n\n    study_accession experiment_accession    experiment_title    experiment_desc organism_taxid  organism_name   library_name    library_strategy    library_source  library_selection   library_layout  sample_accession    sample_title    instrument  instrument_model    instrument_model_desc   total_spots total_size  run_accession   run_total_spots run_total_bases\n    SRP000941   SRX056722   Reference Epigenome: ChIP-Seq Analysis of H3K27ac in hESC H1 Cells  Reference Epigenome: ChIP-Seq Analysis of H3K27ac in hESC H1 Cells  9606    Homo sapiens    SAK270  ChIP-Seq    GENOMIC ChIP    SINGLE  SRS184466       Illumina HiSeq 2000 Illumina HiSeq 2000 ILLUMINA    26900401    531654480   SRR179707   26900401    807012030\n    SRP000941   SRX027889   Reference Epigenome: ChIP-Seq Analysis of H2AK5ac in hESC Cells Reference Epigenome: ChIP-Seq Analysis of H2AK5ac in hESC Cells 9606    Homo sapiens    SAK201  ChIP-Seq    GENOMIC ChIP    SINGLE  SRS116481       Illumina Genome Analyzer II Illumina Genome Analyzer II ILLUMINA    37528590    779578968   SRR067978   37528590    1351029240\n    SRP000941   SRX027888   Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606    Homo sapiens    LLH1U   ChIP-Seq    GENOMIC RANDOM  SINGLE  SRS116483       Illumina Genome Analyzer II Illumina Genome Analyzer II ILLUMINA    13603127    3232309537  SRR067977   13603127    489712572\n    SRP000941   SRX027887   Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  Reference Epigenome: ChIP-Seq Input from hESC H1 Cells  9606    Homo sapiens    DM219   ChIP-Seq    GENOMIC RANDOM  SINGLE  SRS116562       Illumina Genome Analyzer II Illumina Genome Analyzer II ILLUMINA    22430523    506327844   SRR067976   22430523    807498828\n\nThis project is a collection of multiple assays.\n\n    $ pysradb metadata SRP000941 --detailed  | tr -s '  ' | cut -f5 -d ' ' | sort | uniq -c\n\n    999 Bisulfite-Seq\n    768 ChIP-Seq\n      1 library_strategy\n    121 OTHER\n    353 RNA-Seq\n     28 WGS\n\nWe want to however only download `RNA-seq` samples:\n\n    $ pysradb metadata SRP000941 --detailed | grep 'study\\|RNA-Seq' | pysradb download\n\nThis will download all `RNA-seq` samples coming from this project using\n`aspera-client`, if available. Alternatively, it can also use `wget`.\n\nDownloading an entire project is easy:\n\n    $ pysradb download -p SRP000941\n\nDownloads are organized by `SRP/SRX/SRR` mimicking the hiererachy of SRA\nprojects.\n"
  },
  {
    "path": "docs/cmdline.md",
    "content": "# CLI\n\n    $ pysradb\n    usage: pysradb [-h] [--version] [--citation]\n                   {metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs,geo-matrix,srp-to-pmid,gse-to-pmid,pmid-to-gse,pmid-to-srp,pmc-to-identifiers,pmid-to-identifiers,doi-to-gse,doi-to-srp,doi-to-identifiers}\n                   ...\n\n    pysradb: Query NGS metadata and data from NCBI Sequence Read Archive.\n    Citation: 10.12688/f1000research.18676.1\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      --version             show program's version number and exit\n      --citation            how to cite\n\n    subcommands:\n      {metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs,geo-matrix,srp-to-pmid,gse-to-pmid,pmid-to-gse,pmid-to-srp,pmc-to-identifiers,pmid-to-identifiers,doi-to-gse,doi-to-srp,doi-to-identifiers}\n        metadata            Fetch metadata for SRA project (SRPnnnn)\n        download            Download SRA project (SRPnnnn)\n        search              Search SRA/ENA for matching text\n        gse-to-gsm          Get GSM for a GSE\n        gse-to-srp          Get SRP for a GSE\n        gsm-to-gse          Get GSE for a GSM\n        gsm-to-srp          Get SRP for a GSM\n        gsm-to-srr          Get SRR for a GSM\n        gsm-to-srs          Get SRS for a GSM\n        gsm-to-srx          Get SRX for a GSM\n        srp-to-gse          Get GSE for a SRP\n        srp-to-srr          Get SRR for a SRP\n        srp-to-srs          Get SRS for a SRP\n        srp-to-srx          Get SRX for a SRP\n        srr-to-gsm          Get GSM for a SRR\n        srr-to-srp          Get SRP for a SRR\n        srr-to-srs          Get SRS for a SRR\n        srr-to-srx          Get SRX for a SRR\n        srs-to-gsm          Get GSM for a SRS\n        srs-to-srx          Get SRX for a SRS\n        srx-to-srp          Get SRP for a SRX\n        srx-to-srr          Get SRR for a SRX\n        srx-to-srs          Get SRS for a SRX\n        geo-matrix          Download and parse GEO Matrix files\n        srp-to-pmid         Get PMIDs for SRP accessions\n        gse-to-pmid         Get PMIDs for GSE accessions\n        pmid-to-gse         Get GSE accessions from PMIDs\n        pmid-to-srp         Get SRP accessions from PMIDs\n        pmc-to-identifiers  Extract database identifiers from PMC articles\n        pmid-to-identifiers Extract database identifiers from PubMed articles\n        doi-to-gse          Get GSE accessions from DOIs\n        doi-to-srp          Get SRP accessions from DOIs\n        doi-to-identifiers  Extract database identifiers from articles via DOI\n\n## Enriching metadata\n\nExtract standardized biological metadata from SRA/GEO datasets using LLMs.\n\n### Quickstart\n\n```bash\nfrom pysradb import SRAweb\n\nclient = SRAweb()\n\ndf = client.metadata(\"GSE286254\", detailed=True, enrich=True)\n\n# Returns original + 9 enriched columns (might not always be complete):\n# guessed_organ, guessed_tissue, guessed_anatomical_system,\n# guessed_cell_type, guessed_disease, guessed_sex,\n# guessed_development_stage, guessed_assay, guessed_organism\n```\n\n### Prerequisites\n\nInstall Ollama: <https://ollama.ai>\n\n```bash\nollama pull phi3\n```\n\n### Advanced Usage\n\n```bash\n# Use different model\ndf = client.metadata(\"GSE286254\", detailed=True, enrich=True,\n                enrich_backend=\"ollama/llama3.2\")\n\n# Manual enrichment with custom settings\nfrom pysradb.metadata_enrichment import create_metadata_extractor, load_ontology_reference\n\n# LLM-based extraction\nextractor_llm = create_metadata_extractor(method=\"llm\", backend=\"ollama/phi3\")\ndf_enriched = extractor_llm.enrich_dataframe(df, prefix=\"guessed_\")\n\n# Embedding-based extraction (faster, offline)\nontology_ref = load_ontology_reference()\nextractor_emb = create_metadata_extractor(\n    method=\"embedding\",\n    model=\"FremyCompany/BioLORD-2023\",\n    reference_categories=ontology_ref\n)\ndf_enriched = extractor_emb.enrich_dataframe(df, prefix=\"guessed_\")\n```\n\nSee [Notebook 09](https://github.com/saketkc/pysradb/blob/develop/notebooks/09.Metadata_Enrichment_with_LLMs.ipynb) for detailed examples.\n\n## Getting metadata for a SRA project (SRP)\n\nThe most basic information associated with any SRA project is its list\nof experiments and run accessions.\n\n    $ pysradb metadata SRP098789\n\n     study_accession experiment_accession sample_accession run_accession\n     SRP098789       SRX2536403           SRS1956353       SRR5227288\n     SRP098789       SRX2536404           SRS1956354       SRR5227289\n     SRP098789       SRX2536405           SRS1956355       SRR5227290\n     SRP098789       SRX2536406           SRS1956356       SRR5227291\n     SRP098789       SRX2536407           SRS1956357       SRR5227292\n     SRP098789       SRX2536408           SRS1956358       SRR5227293\n     SRP098789       SRX2536409           SRS1956359       SRR5227294\n\nListing SRX and SRRs for a SRP is often not useful. We might want to\ntake a quick look at the metadata associated with the samples:\n\n    $ pysradb metadata SRP098789\n\n     study_accession experiment_accession sample_accession run_accession sample_attribute\n     SRP098789       SRX2536403           SRS1956353       SRR5227288    source_name: Huh7_1.5 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n     SRP098789       SRX2536404           SRS1956354       SRR5227289    source_name: Huh7_1.5 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n     SRP098789       SRX2536405           SRS1956355       SRR5227290    source_name: Huh7_1.5 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n     SRP098789       SRX2536406           SRS1956356       SRR5227291    source_name: Huh7_0.3 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n     SRP098789       SRX2536407           SRS1956357       SRR5227292    source_name: Huh7_0.3 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n     SRP098789       SRX2536408           SRS1956358       SRR5227293    source_name: Huh7_0.3 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n\nThe example here came from a Ribosome profiling study and consists of a\ncollection of both Ribo-seq and RNA-seq samples. We can filter out only\nthe RNA-seq samples:\n\n    $ pysradb metadata SRP098789 --detailed | grep 'study|RNA-Seq'\n\n    SRP098789       SRX2536422           SRR5227307    RNA-Seq          SINGLE -\n    SRP098789       SRX2536424           SRR5227309    RNA-Seq          SINGLE -\n    SRP098789       SRX2536426           SRR5227311    RNA-Seq          SINGLE -\n    SRP098789       SRX2536428           SRR5227313    RNA-Seq          SINGLE -\n\nA more complicated example will consist of multiple assays. For example\n\\`SRP000941\\`:\n\n    $ pysradb metadata SRP000941 --detailed  | tr -s '  ' | cut -f5 -d ' ' | sort | uniq -c\n    999 Bisulfite-Seq\n    768 ChIP-Seq\n      1 library_strategy\n    121 OTHER\n    353 RNA-Seq\n     28 WGS\n\n## Enriching metadata\n\nYou can enrich metadata with standardized biological attributes using biomedical-specialized LLMs through the `--enrich` flag:\n\n### Basic enrichment (using default backend)\n\n    $ pysradb metadata GSE286254 --detailed --enrich\n\nThe default uses **Meditron** (7B parameters, trained on medical literature and guidelines), which is optimized for biomedical text understanding.\n\nThis returns the original metadata plus 9 enriched columns:\n- `guessed_organ`\n- `guessed_tissue`\n- `guessed_anatomical_system`\n- `guessed_cell_type`\n- `guessed_disease`\n- `guessed_sex`\n- `guessed_development_stage`\n- `guessed_assay`\n- `guessed_organism`\n\n### Using alternative biomedical backends\n\n    $ pysradb metadata GSE286254 --detailed --enrich --enrich-backend ollama/openbiollm-8b\n\nAvailable biomedical backends:\n- `ollama/meditron` (default, 7B - optimized for medical text)\n- `ollama/openbiollm-8b` (8B - trained on 500k+ biomedical entries, superior biomedical performance)\n\nBoth models are specialized for biomedical and clinical text understanding, making them ideal for SRA metadata enrichment.\n\nFor more details on enrichment features and prerequisites, see the [Enriching metadata](#enriching-metadata) section above.\n\n## Experiment accessions for a project (SRP =\\> SRX)\n\nA frequently encountered task involves getting all the experiments (SRX)\nfor a particular study accession (SRP). Consider project \\`SRP048759\\`:\n\n    $ pysradb srp-to-srx SRP048759\n\n## Sample accessions for a project (SRP =\\> SRS)\n\nEach experiment involves one or multiple biological samples (SRS), that\nare put through different experiments (SRX).\n\n    $ pysradb srp-to-srs --detailed SRP048759\n\n    study_accession sample_accession\n    SRP048759       SRS718878\n    SRP048759       SRS718879\n    SRP048759       SRS718880\n    SRP048759       SRS718881\n    SRP048759       SRS718882\n    SRP048759       SRS718883\n    SRP048759       SRS718884\n    SRP048759       SRS718885\n    SRP048759       SRS718886\n\nThis is very limited information. It can again be detailed out using the\n[\\--detailed]{.title-ref} flag:\n\n    $ pysradb srp-to-srs --detailed SRP048759\n\n    study_accession sample_accession        experiment_accession    run_accession   study_alias     sample_alias    experiment_alias        run_alias\n    SRP048759       SRS718878       SRX729552       SRR1608490      GSE62190        GSM1521543      GSM1521543      GSM1521543_r1\n    SRP048759       SRS718878       SRX729552       SRR1608491      GSE62190        GSM1521543      GSM1521543      GSM1521543_r2\n    SRP048759       SRS718878       SRX729552       SRR1608492      GSE62190        GSM1521543      GSM1521543      GSM1521543_r3\n    SRP048759       SRS718878       SRX729552       SRR1608493      GSE62190        GSM1521543      GSM1521543      GSM1521543_r4\n    SRP048759       SRS718879       SRX729553       SRR1608494      GSE62190        GSM1521544      GSM1521544      GSM1521544_r1\n    SRP048759       SRS718879       SRX729553       SRR1608495      GSE62190        GSM1521544      GSM1521544      GSM1521544_r2\n\n## Run accessions for experiments (SRX =\\> SRR)\n\nAnother frequently encountered task involves fetching the run accessions\n(SRR) for a particular experiment (SRX). Consider experiments\n[SRX217956]{.title-ref} and [SRX2536403]{.title-ref}. We want to be able\nto resolve the run accessions for these experiments:\n\n    $ pysradb srx-to-srr SRX217956  SRX2536403 --detailed\n\n    experiment_accession run_accession study_accession sample_attribute\n    SRX217956            SRR649752     SRP017942       source_name: 3T3 cells || treatment: control || cell line: 3T3 cells || assay type: Riboseq\n    SRX2536403           SRR5227288    SRP098789       source_name: Huh7_1.5 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n\n## Experiment accessions for runs (SRR =\\> SRX)\n\nFor fetching experiment accessions (SRX) for one or multiple run\naccessions (SRR):\n\n    $ pysradb srr-to-srx SRR5227288 SRR649752 --detailed\n    run_accession study_accession experiment_accession sample_attribute\n    SRR649752     SRP017942       SRX217956            source_name: 3T3 cells || treatment: control || cell line: 3T3 cells || assay type: Riboseq\n    SRR5227288    SRP098789       SRX2536403           source_name: Huh7_1.5 µM PF-067446846_10 min_ribo-seq || cell line: Huh7 || treatment time: 10 min || library type: ribo-seq\n\n## Downaloading entire project\n\n    $ pysradb metadata --detailed SRP098789 | pysradb download\n\n## GEO accessions for studies (SRP =\\> GSE)\n\n    $ pysradb srp-to-gse SRP090415\n\n    study_accession study_alias\n    SRP090415       GSE87328\n\nBut not all SRPs will have an associated GEO id (GSE):\n\n    $ pysradb srp-to-gse SRP029589\n\n    study_accession study_alias\n    SRP029589       PRJNA218051\n\n## Converting GSM to SRP\n\n    $ pysradb gsm-to-srp GSM2177186\n\n    experiment_alias study_accession\n    GSM2177186       SRP075720\n\n## Converting GSM to GSE\n\n    $ pysradb gsm-to-gse GSM2177186\n\n    experiment_alias study_alias\n    GSM2177186       GSE81903\n\n## Converting GSM to SRX\n\n    $ pysradb gsm-to-srx GSM2177186\n\n    experiment_alias experiment_accession\n    GSM2177186       SRX1800089\n\n## Converting GSM to SRR\n\n    $ pysradb gsm-to-srr GSM2177186\n\n    experiment_alias run_accession\n    GSM2177186       SRR3587529\n\n## SRA accessions for GEO studies (GSE =\\> SRP)\n\n    $ pysradb gse-to-srp GSE87328i\n\n    study_alias study_accession\n    GSE87328    SRP090415\n\n## Converting SRP to PMID\n\n    $ pysradb srp-to-pmid SRP045778\n\n    srp_accession bioproject pmid\n    SRP045778     PRJNA257197 27373336\n\n## Converting GSE to PMID\n\n    $ pysradb gse-to-pmid GSE253406\n\n    gse_accession pmid\n    GSE253406     39528918\n\n## Extracting identifiers from PMC/DOI\n\nExtract database identifiers (GSE, PRJNA, SRP, etc.) from PubMed Central articles or DOIs.\n\n### Get all identifiers from a PMID\n\n    $ pysradb pmid-to-identifiers 39528918\n\n    pmid      pmc_id       gse_ids     prjna_ids    srp_ids\n    39528918  PMC10802650  GSE253406   PRJNA1058002 SRP484103\n\n### Get only GSE or SRP from PMID\n\n    $ pysradb pmid-to-gse 39528918\n\n    pmid      pmc_id       gse_ids\n    39528918  PMC10802650  GSE253406\n\n    $ pysradb pmid-to-srp 39528918\n\n    pmid      pmc_id       srp_ids\n    39528918  PMC10802650  SRP484103\n\n### Extract from DOI\n\n    $ pysradb doi-to-identifiers 10.12688/f1000research.18676.1\n\n    doi                                 pmid      pmc_id      gse_ids  srp_ids\n    10.12688/f1000research.18676.1      30873266  PMC6411813  GSE...   SRP...\n\n### Extract from PMC ID\n\n    $ pysradb pmc-to-identifiers PMC10802650\n\n    pmc_id       gse_ids     prjna_ids    srp_ids\n    PMC10802650  GSE253406   PRJNA1058002 SRP484103\n\n## Downloading supplementary files from GEO\n\n    $ pysradb download -g GSE161707\n\n## Downloading an entire SRA/ENA project (multithreaded)\n\n`pysradb` makes it super easy to download datasets from SRA in parallel:\nUsing 8 threads to download:\n\n    $ pysradb download -y -t 8 --out-dir ./pysradb_downloads -p SRP063852\n\nDownloads are organized by `SRP/SRX/SRR` mimicking the hierarchy of SRA\nprojects.\n"
  },
  {
    "path": "docs/commands.rst",
    "content": "API Documentation\n=================\n\nSee :doc:`pysradb` for the Python API reference documentation.\n"
  },
  {
    "path": "docs/conf.py",
    "content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n#\n# pysradb documentation build configuration file, created by\n# sphinx-quickstart on Fri Jun  9 13:47:02 2017.\n#\n# This file is execfile()d with the current directory set to its\n# containing dir.\n#\n# Note that not all possible configuration values are present in this\n# autogenerated file.\n#\n# All configuration values have a default; values that are commented out\n# serve to show the default.\n\n# If extensions (or modules to document with autodoc) are in another\n# directory, add these directories to sys.path here. If the directory is\n# relative to the documentation root, use os.path.abspath to make it\n# absolute, like shown here.\n#\nimport os\nimport sys\n\n# import guzzle_sphinx_theme\nimport pysradb\n\nautodoc_mock_imports = [\"xmltodict\", \"numpy\", \"pandas\", \"requests\", \"tqdm\"]\n\nsys.path.insert(0, os.path.abspath(\"..\"))\n\n\n# -- General configuration ---------------------------------------------\n\n# If your documentation needs a minimal Sphinx version, state it here.\n#\n# needs_sphinx = '1.0'\n\n# Add any Sphinx extension module names here, as strings. They can be\n# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.\nextensions = [\n    \"IPython.sphinxext.ipython_directive\",\n    \"IPython.sphinxext.ipython_console_highlighting\",\n    \"sphinx.ext.mathjax\",\n    \"sphinx.ext.autodoc\",\n    \"sphinx.ext.autosummary\",\n    \"sphinx.ext.doctest\",\n    \"sphinx.ext.viewcode\",\n    \"sphinx.ext.inheritance_diagram\",\n    \"numpydoc\",\n    \"sphinx_tabs.tabs\",\n    \"sphinx_panels\",\n    \"sphinxcontrib.gtagjs\",\n    \"myst_parser\",\n    \"nbsphinx\",\n]\ngtagjs_ids = [\n    \"G-CKQZFCEENZ\",\n]\n\npanels_add_bootstrap_css = False\n\n# Add any paths that contain templates here, relative to this directory.\ntemplates_path = [\"_templates\"]\n\n# The suffix(es) of source filenames.\n# You can specify multiple suffix as a list of string:\n#\nsource_suffix = [\".rst\", \".md\"]\n# source_suffix = \".md\"\n\n# The master toctree document.\nmaster_doc = \"index\"\n\n# General information about the project.\nproject = \"pysradb\"\ncopyright = \"2023, Saket Choudhary\"\nauthor = \"Saket Choudhary\"\n# The version info for the project you're documenting, acts as replacement\n# for |version| and |release|, also used in various other places throughout\n# the built documents.\n#\n# The short X.Y version.\nversion = pysradb.__version__\n# The full version, including alpha/beta/rc tags.\nrelease = pysradb.__version__\n\n# The language for content autogenerated by Sphinx. Refer to documentation\n# for a list of supported languages.\n#\n# This is also used if you do content translation via gettext catalogs.\n# Usually you set \"language\" from the command line for these cases.\nlanguage = \"en\"\n\n# List of patterns, relative to source directory, that match files and\n# directories to ignore when looking for source files.\n# This patterns also effect to html_static_path and html_extra_path\nexclude_patterns = [\"_build\", \"Thumbs.db\", \".DS_Store\"]\n\n# The name of the Pygments (syntax highlighting) style to use.\npygments_style = \"sphinx\"\n\n# If true, `todo` and `todoList` produce output, else they produce nothing.\ntodo_include_todos = False\n\n\n# -- Options for HTML output -------------------------------------------\n\n# The theme to use for HTML and HTML Help pages.  See the documentation for\n# a list of builtin themes.\n#\nhtml_theme = \"furo\"\n\n# Theme options are theme-specific and customize the look and feel of a\n# theme further.  For a list of options available for each theme, see the\n# documentation.\n#\nhtml_theme_options = {\n    \"light_css_variables\": {\n        \"color-brand-primary\": \"#0066cc\",\n        \"color-brand-content\": \"#0066cc\",\n        \"color-code-background\": \"#f5f5f5\",\n        \"color-inline-code-background\": \"#f0f0f0\",\n    },\n    \"dark_css_variables\": {\n        \"color-brand-primary\": \"#3b82f6\",\n        \"color-brand-content\": \"#3b82f6\",\n        \"color-code-background\": \"#1e293b\",\n        \"color-inline-code-background\": \"#334155\",\n    },\n}\n\n# Add any paths that contain custom static files (such as style sheets) here,\n# relative to this directory. They are copied after the builtin static files,\n# so a file named \"default.css\" will overwrite the builtin \"default.css\".\nhtml_static_path = [\"_static\"]\n\n\n# -- Options for HTMLHelp output ---------------------------------------\n\n# Output file base name for HTML help builder.\nhtmlhelp_basename = \"pysradbdoc\"\n\n\n# -- Options for LaTeX output ------------------------------------------\n\nlatex_elements = {\n    # The paper size ('letterpaper' or 'a4paper').\n    #\n    # 'papersize': 'letterpaper',\n    # The font size ('10pt', '11pt' or '12pt').\n    #\n    # 'pointsize': '10pt',\n    # Additional stuff for the LaTeX preamble.\n    #\n    # 'preamble': '',\n    # Latex figure (float) alignment\n    #\n    # 'figure_align': 'htbp',\n}\n\n# Grouping the document tree into LaTeX files. List of tuples\n# (source start file, target name, title, author, documentclass\n# [howto, manual, or own class]).\nlatex_documents = [\n    (master_doc, \"pysradb.tex\", \"pysradb Documentation\", \"Saket Choudhary\", \"manual\")\n]\n\n\n# -- Options for manual page output ------------------------------------\n\n# One entry per manual page. List of tuples\n# (source start file, name, description, authors, manual section).\nman_pages = [(master_doc, \"pysradb\", \"pysradb Documentation\", [author], 1)]\n\n\n# -- Options for Texinfo output ----------------------------------------\n\n# Grouping the document tree into Texinfo files. List of tuples\n# (source start file, target name, title, author,\n#  dir menu entry, description, category)\ntexinfo_documents = [\n    (\n        master_doc,\n        \"pysradb\",\n        \"pysradb Documentation\",\n        author,\n        \"pysradb\",\n        \"One line description of project.\",\n        \"Miscellaneous\",\n    )\n]\n\n\nnumpydoc_show_class_members = False\n\n\n##html_theme_path = guzzle_sphinx_theme.html_theme_path()\n##html_theme = \"guzzle_sphinx_theme\"\n##\n### Register the theme as an extension to generate a sitemap.xml\n##extensions.append(\"guzzle_sphinx_theme\")\n##\n### Guzzle theme options (see theme.conf for more information)\n##html_theme_options = {\n##    # Set the name of the project to appear in the sidebar\n##    \"project_nav_name\": \"pysradb\"\n##}\n\nscv_greatest_tag = True\nscv_show_banner = True\n\nhtml_logo = \"_static/pysradb_v3.png\"\n\n# Load custom JavaScript for copy-to-clipboard functionality\nhtml_js_files = [\n    \"copy-button.js\",\n]\n\n# Load custom CSS to override Pygments background colors\nhtml_css_files = [\n    \"custom.css\",\n]\n\n# NBSphinx configuration\nnbsphinx_execute = \"never\"\nexclude_patterns.append(\"**/.ipynb_checkpoints\")\nexclude_patterns.append(\"notebooks/.ipynb_checkpoints\")\n"
  },
  {
    "path": "docs/contributing.md",
    "content": "# Contributing\n\nContributions are welcome, and they are greatly appreciated! Every\nlittle bit helps, and credit will always be given.\n\nYou can contribute in many ways:\n\n## Types of Contributions\n\n### Report Bugs\n\nReport bugs at <https://github.com/saketkc/pysradb/issues>.\n\nIf you are reporting a bug, please include:\n\n-   Your operating system name and version.\n-   Any details about your local setup that might be helpful in\n    troubleshooting.\n-   Detailed steps to reproduce the bug.\n\n### Fix Bugs\n\nLook through the GitHub issues for bugs. Anything tagged with \\\"bug\\\"\nand \\\"help wanted\\\" is open to whoever wants to implement it.\n\n### Implement Features\n\nLook through the GitHub issues for features. Anything tagged with\n\\\"enhancement\\\" and \\\"help wanted\\\" is open to whoever wants to\nimplement it.\n\n### Write Documentation\n\npysradb could always use more documentation, whether as part of the\nofficial pysradb docs, in docstrings, or even on the web in blog posts,\narticles, and such.\n\n### Submit Feedback\n\nThe best way to send feedback is to file an issue at\n<https://github.com/saketkc/pysradb/issues>.\n\nIf you are proposing a feature:\n\n-   Explain in detail how it would work.\n-   Keep the scope as narrow as possible, to make it easier to\n    implement.\n-   Remember that this is a volunteer-driven project, and that\n    contributions are welcome :)\n\n## Get Started!\n\nReady to contribute? Here\\'s how to set up [pysradb]{.title-ref} for\nlocal development.\n\n1.  Fork the [pysradb]{.title-ref} repo on GitHub.\n\n2.  Clone your fork locally:\n\n    ``` shell\n    $ git clone git@github.com:your_name_here/pysradb.git\n    ```\n\n3.  Install your local copy into a virtualenv. Assuming you have\n    virtualenvwrapper installed, this is how you set up your fork for\n    local development (If python \\--version is less than 3.0, run [\\$\n    mkvirtualenv pysradb \\--python=py3]{.title-ref} instead):\n\n    ``` shell\n    $ mkvirtualenv pysradb\n    $ cd pysradb/\n    $ python setup.py develop\n    ```\n\n4.  Create a branch for local development:\n\n    ``` shell\n    $ git checkout -b name-of-your-bugfix-or-feature\n    ```\n\n    Now you can make your changes locally.\n\n5.  When you\\'re done making changes, check that your changes pass\n    flake8 and the tests, including testing other Python versions with\n    tox:\n\n    ``` shell\n    $ flake8 pysradb tests\n    $ python setup.py test or py.test\n    $ tox\n    ```\n\n    To get flake8 and tox, just pip install them into your virtualenv.\n\n6.  Commit your changes and push your branch to GitHub:\n\n    ``` shell\n    $ git add .\n    $ git commit -m \"Your detailed description of your changes.\"\n    $ git push origin name-of-your-bugfix-or-feature\n    ```\n\n7.  Submit a pull request through the GitHub website.\n\n## Pull Request Guidelines\n\nBefore you submit a pull request, check that it meets these guidelines:\n\n1.  The pull request should include tests.\n2.  If the pull request adds functionality, the docs should be updated.\n    Put your new functionality into a function with a docstring, and add\n    the feature to the list in README.rst.\n3.  The pull request should work for Python 2.7, 3.4, 3.5 and 3.6, and\n    for PyPy. Make sure that the tests pass for all supported Python\n    versions.\n\n## Tips\n\nTo run a subset of tests:\n\n``` shell\n$ py.test tests.test_pysradb\n```\n\n## Deploying\n\nA reminder for the maintainers on how to deploy. Make sure all your\nchanges are committed (including an entry in HISTORY.rst). Then run:\n\n``` shell\n$ bumpversion patch # possible: major / minor / patch\n$ git push\n$ git push --tags\n```\n\nCI will then deploy to PyPI if tests pass.\n"
  },
  {
    "path": "docs/history.md",
    "content": "# History\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.5.1 (2025-10-29)\n</summary>\n\n\n- Add prjna support in doi-to-identifiers [#249](https://github.com/saketkc/pysradb/pull/249) \n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.5.0 (2025-10-19)\n</summary>\n\n\n- Add pmid/doi-to-gse/srp conversion [#246](https://github.com/saketkc/pysradb/pull/246).\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.4.1 (2025-09-27)\n</summary>\n\n\n- Add gse-to-pmid conversion [#241](https://github.com/saketkc/pysradb/pull/244).\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.4.0 (2025-09-27)\n</summary>\n\n\n- Add sra-to-pmid conversion [#241](https://github.com/saketkc/pysradb/pull/241). Thanks [@andrewdavidsmith](https://github.com/andrewdavidsmith) for the idea.\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.3.0 (2025-08-24)\n</summary>\n\n\n- Download logic improvements: remoted requests-ftp as requirement\n- Fix for handling missing metadata keys [#223](https://github.com/saketkc/pysradb/pull/223). Thanks [@andrewdavidsmith](https://github.com/andrewdavidsmith)\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.2.2 (2024-10-03)\n</summary>\n\n\n- Fix for handling ENA urls for paired end data\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.2.1 (2024-08-21)\n</summary>\n\n\n- Fix for handling ENA urls\n- Migrated to pyproject.toml\n\n\n\n</details>\n\n<details open>\n<summary style=\"cursor: pointer; font-weight: bold; font-size: 1.1em; margin-top: 0.5em;\">\n2.2.0 (2023-09-17)\n</summary>\n\n\n- Add support for Biosamples and bioproject [#199](https://github.com/saketkc/pysradb/pull/198)\n- Use retmode xml for Geo search [#200](https://github.com/saketkc/pysradb/pull/200)\n- Documentation fixes\n\n## 2.1.0 (2023-05-16)\n\n-   Fix for [gse-to-srp] returning unrequested GSEs [#186](https://github.com/saketkc/pysradb/issues/190)\n-   Fix for [download] using [public_urls]\n-   Fix for [gsm-to-srx] returning false positives [#165](https://github.com/saketkc/pysradb/issues/165)\n-   Fix for delimiter not being consistent when metadata is printed on\n    terminal [#147](https://github.com/saketkc/pysradb/issues/147)\n-   ENA search is currently broken because of an API change\n\n## 2.0.2 (2023-04-09)\n\n-   Fix for [gse-to-srp] to handle cases where a project is\n    missing but SRXs are returned [#186](https://github.com/saketkc/pysradb/issues/186)\n-   Fix gse-to-gsm [#187](https://github.com/saketkc/pysradb/issues/187)\n\n## 2.0.1 (2023-03-18)\n\n-   Fix for [pysradb download] - using [public_url]\n-   Fix for SRX -\\> SRR and related conversions [#183](https://github.com/saketkc/pysradb/pull/183)\n\n## 2.0.0 (2023-02-23)\n\n-   BREAKING change: Overhaul of how urls and associated metadata are\n    returned (not backward compatible); all column names are lower cased\n    by default\n-   Fix extra space in \\\"organism_taxid\\\" column\n-   Added support for Experiment attributes [#89](https://github.com/saketkc/pysradb/issues/89#issuecomment-1439319532)\n\n## 1.4.2 (06-17-2022)\n\n-   Fix ENA fastq fetching [#163](https://github.com/saketkc/pysradb/issues/163)\n\n## 1.4.1 (06-04-2022)\n\n-   Fix for fetching alternative URLs\n\n## 1.4.0 (06-04-2022)\n\n-   Added ability to fetch alternative URLs (GCP/AWS) for metadata\n    [#161](https://github.com/saketkc/pysradb/issues/161)\n-   Fix for xmldict 0.13.0 no longer defaulting to OrderedDict [#159](https://github.com/saketkc/pysradb/pull/159)\n-   Fix for missing experiment model and description in metadata [#160](https://github.com/saketkc/pysradb/issues/160)\n\n## 1.3.0 (02-18-2022)\n\n-   Add [study_title] to [\\--detailed] flag\n    ([#152](https://github.com/saketkc/pysradb/issues/152))\n-   Fix [KeyError] in [metadata] where some new\n    IDs do not have any metadata\n    ([#151](https://github.com/saketkc/pysradb/issues/151))\n\n## 1.2.0 (01-10-2022)\n\n-   Do not exit if a qeury returns no hits ([#149](https://github.com/saketkc/pysradb/pull/149))\n\n## 1.1.0 (12-12-2021)\n\n-   Fixed [gsm-to-gse] failure\n    ([#128](https://github.com/saketkc/pysradb/pull/128))\n-   Fixed case sensitivity bug for ENA search\n    ([#144](https://github.com/saketkc/pysradb/pull/144))\n-   Fixed publication date bug for search\n    ([#146](https://github.com/saketkc/pysradb/pull/146))\n-   Added support for downloading data from GEO [pysradb dowload -g\n    GSE]\n    ([#129](https://github.com/saketkc/pysradb/pull/129))\n\n## 1.0.1 (01-10-2021)\n\n-   Dropped Python 3.6 since pandas 1.2 is not supported\n\n## 1.0.0 (01-09-2021)\n\n-   Retired `metadb` and `SRAdb` based search through CLI - everything\n    defaults to `SRAweb`\n-   `SRAweb` now supports\n    [search](https://saket-choudhary.me/pysradb/quickstart.html#search)\n-   [N/A] is now replaced with [pd.NA]\n-   Two new fields in \\`\\--detailed\\`: [instrument_model]\n    and [instrument_model_desc]\n    [#75](https://github.com/saketkc/pysradb/issues/75)\n-   Updated documentation\n\n## 0.11.1 (09-18-2020)\n\n-   [library_layout] is now outputted in metadata #56\n-   [-detailed] unifies columns for ENA fastq links instead\n    of appending \\_x/\\_y #59\n-   bugfix for parsing namespace in xml outputs #65\n-   XML errors from NCBI are now handled more gracefully #69\n-   Documentation and dependency updates\n\n## 0.11.0 (09-04-2020)\n\n-   [pysradb download] now supports multiple threads for\n    paralle downloads\n-   [pysradb download] also supports ultra fast downloads of\n    FASTQs from ENA using aspera-client\n\n## 0.10.3 (03-26-2020)\n\n-   Added test cases for SRAweb\n-   API limit exceeding errors are automagically handled\n-   Bug fixes for GSE \\<=\\> SRR\n-   Bug fix for metadata - supports multiple SRPs\n\nContributors\n\n-   Dibya Gautam\n-   Marius van den Beek\n\n## 0.10.2 (02-05-2020)\n\n-   Bug fix: Handle API-rate limit exceeding =\\> Retries\n-   Enhancement: \\'Alternatives\\' URLs are now part of\n    [\\--detailed]\n\n## 0.10.1 (02-04-2020)\n\n-   Bug fix: Handle Python3.6 for capture_output in subprocess.run\n\n## 0.10.0 (01-31-2020)\n\n-   All the subcommands (srx-to-srr, srx-to-srs) will now print\n    additional columns where the first two columns represent the\n    relevant conversion\n-   Fixed a bug where for fetching entries with single efetch record\n\n## 0.9.9 (01-15-2020)\n\n-   Major fix: some SRRs would go missing as the experiment dict was\n    being created only once per SRR (See #15)\n-   Features: More detailed metadata by default in the SRAweb mode\n-   See notebook: <https://colab.research.google.com/drive/1C60V->\n\n## 0.9.7 (01-20-2020)\n\n-   Feature: instrument, run size and total spots are now printed in the\n    metadata by default (SRAweb mode only)\n-   Issue: Fixed an issue with srapath failing on SRP. srapath is now\n    run on individual SRRs.\n\n## 0.9.6 (07-20-2019)\n\n-   Introduced [SRAweb] to perform queries over the web if\n    the SQLite is missing or does not contain the relevant record.\n\n## 0.9.0 (02-27-2019)\n\n### Others\n\n-   This release completely changes the command line interface replacing\n    click with argparse ([#3](https://github.com/saketkc/pysradb/pull/3))\n-   Removed Python 2 comptaible stale code\n\n## 0.8.0 (02-26-2019)\n\n### New methods/functionality\n\n-   \\`srr-to-gsm\\`: convert SRR to GSM\n-   SRAmetadb.sqlite.gz file is deleted by default after extraction\n-   When SRAmetadb is not found a confirmation is seeked before\n    downloading\n-   Confirmation option before SRA downloads\n\n### Bugfix\n\n-   download() works with wget\n\n### Others\n\n-   [\\--out_dir] is now [out-dir]\n\n## 0.7.1 (02-18-2019)\n\nImportant: Python2 is no longer supported. Please consider moving to\nPython3.\n\n### Bugfix\n\n-   Included docs in the index whihch were missed out in the previous\n    release\n\n## 0.7.0 (02-08-2019)\n\n### New methods/functionality\n\n-   \\`gsm-to-srr\\`: convert GSM to SRR\n-   \\`gsm-to-srx\\`: convert GSM to SRX\n-   \\`gsm-to-gse\\`: convert GSM to GSE\n\n### Renamed methods\n\nThe following commad line options have been renamed and the changes are\nnot compatible with 0.6.0 release:\n\n-   [sra-metadata] -\\> [metadata].\n-   [sra-search] -\\> [search].\n-   [srametadb] -\\> [metadb].\n\n## 0.6.0 (12-25-2018)\n\n### Bugfix\n\n-   Fixed bugs introduced in 0.5.0 with API changes where multiple\n    redundant columns were output in [sra-metadata]\n\n### New methods/functionality\n\n-   [download] now allows piped inputs\n\n## 0.5.0 (12-24-2018)\n\n### New methods/functionality\n\n-   Support for filtering by SRX Id for SRA downloads.\n-   \\`srr_to_srx\\`: Convert SRR to SRX/SRP\n-   \\`srp_to_srx\\`: Convert SRP to SRX\n-   Stripped down [sra-metadata] to give minimal information\n-   Added [\\--assay], [\\--desc],\n    [\\--detailed] flag for [sra-metadata]\n-   Improved table printing on terminal\n\n## 0.4.2 (12-16-2018)\n\n### Bugfix\n\n-   Fixed unicode error in tests for Python2\n\n## 0.4.0 (12-12-2018)\n\n### New methods/functionality\n\n-   Added a new [BASEdb] class to handle common database\n    connections\n-   Initial support for GEOmetadb through GEOdb class\n-   Initial support or a command line interface:\n    -   download Download SRA project (SRPnnnn)\n    -   gse-metadata Fetch metadata for GEO ID (GSEnnnn)\n    -   gse-to-gsm Get GSM(s) for GSE\n    -   gsm-metadata Fetch metadata for GSM ID (GSMnnnn)\n    -   sra-metadata Fetch metadata for SRA project (SRPnnnn)\n-   Added three separate notebooks for SRAdb, GEOdb, CLI usage\n\n## 0.3.0 (12-05-2018)\n\n### New methods/functionality\n\n-   [sample_attribute] and\n    [experiment_attribute] are now included by default in\n    the df returned by [sra_metadata()]\n-   [expand_sample_attribute_columns: expand metadata dataframe based on\n    attributes in \\`sample_attribute] column\n-   New methods to guess cell/tissue/strain:\n    [guess_cell_type()]/[guess_tissue_type()]/[guess_strain_type()]\n-   Improved README and usage instructions\n\n## 0.2.2 (12-03-2018)\n\n### New methods/functionality\n\n-   [search_sra()] allows full text search on SRA metadata.\n\n## 0.2.0 (12-03-2018)\n\n### Renamed methods\n\nThe following methods have been renamed and the changes are not\ncompatible with 0.1.0 release:\n\n-   [get_query()] -\\> [query()].\n-   [sra_convert()] -\\> [sra_metadata()].\n-   [get_table_counts()] -\\> [all_row_counts()].\n\n### New methods/functionality\n\n-   [download_sradb_file()] makes fetching [SRAmetadb.sqlite] file easy; wget is no longer required.\n-   [ftp] protocol is now supported besides [fsp] and hence [aspera-client] is now optional. We however, strongly recommend [aspera-client] for faster downloads.\n\n### Bug fixes\n\n-   Silenced [SettingWithCopyWarning] by excplicitly doing\n    operations on a copy of the dataframe instead of the original.\n\nBesides these, all methods now follow a [numpydoc]\ncompatible documentation.\n\n## 0.1.0 (12-01-2018)\n\n-   First release on PyPI.\n\n</details>\n\n"
  },
  {
    "path": "docs/index.rst",
    "content": "============\nIntroduction\n============\n\n\n``pysradb`` provides a simple method to programmatically access metadata\nand download sequencing data from NCBI's Sequence Read Archive (SRA) and European Bioinformatics\nInstitute's European Nucleotide Archive (ENA).\n\n\n\n=============\nQuick Example\n=============\n\nTo fetch metadata associated with project accession ``SRP265425``\n\n.. code-block:: console\n\n    $ pysradb metadata SRP265425\n\n    study_accession\texperiment_accession\texperiment_title\texperiment_desc\torganism_taxid \torganism_name\tlibrary_name\tlibrary_strategy\tlibrary_source\tlibrary_selection\tlibrary_layout\tsample_accession\tsample_title\tinstrument\tinstrument_model\tinstrument_model_desc\ttotal_spots\ttotal_size\trun_accession\trun_total_spots\trun_total_bases\n    SRP265425\tSRX8434255\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t63-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745319\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1311358\t83306910\tSRR11886735\t1311358\t109594216\n    SRP265425\tSRX8434254\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t62-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745320\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2614109\t204278682\tSRR11886736\t2614109\t262305651\n    SRP265425\tSRX8434253\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t61-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745318\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2286312\t183516004\tSRR11886737\t2286312\t263304134\n    SRP265425\tSRX8434252\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t60-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745317\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5202567\t507524965\tSRR11886738\t5202567\t781291588\n    SRP265425\tSRX8434251\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t38-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745315\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t3313960\t356104406\tSRR11886739\t3313960\t612430817\n    SRP265425\tSRX8434250\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t37-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745316\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5155733\t565882351\tSRR11886740\t5155733\t954342917\n    SRP265425\tSRX8434249\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t36-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745313\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1324589\t175619046\tSRR11886741\t1324589\t216531400\n    SRP265425\tSRX8434248\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t35-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745314\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1639851\t198973268\tSRR11886742\t1639851\t245466005\n    SRP265425\tSRX8434247\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t68-2020-05-07\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745312\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t3921389\t210198580\tSRR11886743\t3921389\t332935558\n    SRP265425\tSRX8434246\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t66-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745311\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t14295475\t2150005008\tSRR11886744\t14295475\t2967829315\n    SRP265425\tSRX8434245\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t65-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745310\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5124692\t294846140\tSRR11886745\t5124692\t431819462\n    SRP265425\tSRX8434244\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t64-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745309\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2986306\t205666872\tSRR11886746\t2986306\t275400959\n    SRP265425\tSRX8434243\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t34-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745308\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1182690\t59471336\tSRR11886747\t1182690\t86350631\n    SRP265425\tSRX8434242\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t33-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745307\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t6031816\t749323230\tSRR11886748\t6031816\t928054297\n\n\nTo fetch detailed metadata which includes link to raw sequencing files, specify ``--detailed``:\n\n.. code-block:: console\n\n    $ pysradb metadata SRP265425 --detailed\n\n    run_accession\tstudy_accession\texperiment_accession\texperiment_title\texperiment_desc\torganism_taxid \torganism_name\tlibrary_name\tlibrary_strategy\tlibrary_source\tlibrary_selection\tlibrary_layout\tsample_accession\tsample_title\tinstrument\tinstrument_model\tinstrument_model_desc\ttotal_spots\ttotal_size\trun_total_spots\trun_total_bases\trun_alias\tsra_url_alt1\tsra_url_alt2\tsra_url\texperiment_alias\tisolate\tcollected_by\tcollection_date\tgeo_loc_name\thost\thost_disease\tisolation_source\tlat_lon\tBioSampleModel\tsra_url_alt3\tena_fastq_http\tena_fastq_http_1\tena_fastq_http_2\tena_fastq_ftp\tena_fastq_ftp_1\tena_fastq_ftp_2\n    SRR11886735\tSRP265425\tSRX8434255\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t63-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745319\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1311358\t83306910\t1311358\t109594216\tIonXpress_063_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam\tgs://sra-pub-src-9/SRR11886735/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886735/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/011608/SRR11886735\t\tGC-20\tNA\t02-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/035/SRR11886735/SRR11886735.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/035/SRR11886735/SRR11886735.fastq.gz\n    SRR11886736\tSRP265425\tSRX8434254\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t62-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745320\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2614109\t204278682\t2614109\t262305651\tIonXpress_062_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam\tgs://sra-pub-src-16/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRZ/011886/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/011608/SRR11886736\t\tGC-51\tNA\t14-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/036/SRR11886736/SRR11886736.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/036/SRR11886736/SRR11886736.fastq.gz\n    SRR11886737\tSRP265425\tSRX8434253\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t61-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745318\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2286312\t183516004\t2286312\t263304134\tIonXpress_061_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam\tgs://sra-pub-src-16/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRZ/011886/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/011608/SRR11886737\t\tGC-24\tNA\t07-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/037/SRR11886737/SRR11886737.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/037/SRR11886737/SRR11886737.fastq.gz\n    SRR11886738\tSRP265425\tSRX8434252\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t60-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745317\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5202567\t507524965\t5202567\t781291588\tIonXpress_060_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam\tgs://sra-pub-src-15/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRZ/011886/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011608/SRR11886738\t\tGC-23\tNA\t08-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/038/SRR11886738/SRR11886738.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/038/SRR11886738/SRR11886738.fastq.gz\n    SRR11886739\tSRP265425\tSRX8434251\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t38-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745315\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t3313960\t356104406\t3313960\t612430817\tIonXpress_038_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-13/SRR11886739/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886739/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/011608/SRR11886739\t\tGC-11b\tNA\t24-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/039/SRR11886739/SRR11886739.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/039/SRR11886739/SRR11886739.fastq.gz\n    SRR11886740\tSRP265425\tSRX8434250\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t37-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745316\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5155733\t565882351\t5155733\t954342917\tIonXpress_037_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-5/SRR11886740/IonXpress_037_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886740/IonXpress_037_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011608/SRR11886740\t\tGC-14b\tNA\t28-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/040/SRR11886740/SRR11886740.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/040/SRR11886740/SRR11886740.fastq.gz\n    SRR11886741\tSRP265425\tSRX8434249\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t36-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745313\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1324589\t175619046\t1324589\t216531400\tIonXpress_036_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-11/SRR11886741/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886741/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/011608/SRR11886741\t\tGC-12\tNA\t24-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/041/SRR11886741/SRR11886741.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/041/SRR11886741/SRR11886741.fastq.gz\n    SRR11886742\tSRP265425\tSRX8434248\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t35-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745314\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1639851\t198973268\t1639851\t245466005\tIonXpress_035_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-11/SRR11886742/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886742/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011608/SRR11886742\t\tGC-13\tNA\t23-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/042/SRR11886742/SRR11886742.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/042/SRR11886742/SRR11886742.fastq.gz\n    SRR11886743\tSRP265425\tSRX8434247\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t68-2020-05-07\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745312\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t3921389\t210198580\t3921389\t332935558\tIonXpress_068_R_2020_05_07_11_47_51_user_GCEID-S5-60-SARS_CoV2_SA4.bam\tgs://sra-pub-src-17/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRZ/011886/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/011608/SRR11886743\t\tGC-55\tNA\t24-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/043/SRR11886743/SRR11886743.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/043/SRR11886743/SRR11886743.fastq.gz\n    SRR11886744\tSRP265425\tSRX8434246\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t66-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745311\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t14295475\t2150005008\t14295475\t2967829315\tIonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq\tgs://sra-pub-src-11/SRR11886744/IonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq.1\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886744/IonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/011608/SRR11886744\t\tGC-26\tNA\t07-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\t\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/044/SRR11886744/SRR11886744.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/044/SRR11886744/SRR11886744.fastq.gz\n    SRR11886745\tSRP265425\tSRX8434245\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t65-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745310\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t5124692\t294846140\t5124692\t431819462\tIonXpress_065_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.bam\tgs://sra-pub-src-16/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRZ/011886/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/011608/SRR11886745\t\tGC-25\tNA\t10-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/045/SRR11886745/SRR11886745.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/045/SRR11886745/SRR11886745.fastq.gz\n    SRR11886746\tSRP265425\tSRX8434244\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t64-2020-04-22\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745309\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t2986306\t205666872\t2986306\t275400959\tIonXpress_064_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam\tgs://sra-pub-src-17/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRZ/011886/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/011608/SRR11886746\t\tGC-21\tNA\t03-Apr-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/046/SRR11886746/SRR11886746.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/046/SRR11886746/SRR11886746.fastq.gz\n    SRR11886747\tSRP265425\tSRX8434243\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t34-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745308\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t1182690\t59471336\t1182690\t86350631\tIonXpress_034_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-16/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRZ/011886/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011608/SRR11886747\t\tGC-11a\tNA\t24-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/047/SRR11886747/SRR11886747.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/047/SRR11886747/SRR11886747.fastq.gz\n    SRR11886748\tSRP265425\tSRX8434242\tAmpliseq of SARS-CoV-2\tAmpliseq of SARS-CoV-2\t2697049\tSevere acute respiratory syndrome coronavirus 2\t33-2020-04-03\tAMPLICON\tVIRAL RNA\tRT-PCR\tSINGLE\tSRS6745307\t\tIon Torrent S5 XL\tIon Torrent S5 XL\tION_TORRENT\t6031816\t749323230\t6031816\t928054297\tIonXpress_033_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam\tgs://sra-pub-src-15/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRZ/011886/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam\thttps://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/011608/SRR11886748\t\tGC-14a\tNA\t28-Mar-2020\tAustralia: Victoria\tHomo sapiens\tCOVID-19\tswab\tNA\tPathogen.cl\thttps://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/048/SRR11886748/SRR11886748.fastq.gz\t\t\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/048/SRR11886748/SRR11886748.fastq.gz\n\nSee :doc:`quickstart` for other examples.\n\n.. toctree::\n   :hidden:\n   :maxdepth: 1\n\n   installation\n   quickstart\n   cmdline\n   python-api-usage\n   case_studies\n   notebooks\n   commands\n   contributing\n   authors\n   history\n   modules\n\n\n===========\nPublication\n===========\n\n `pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive <https://f1000research.com/articles/8-532/v1>`_\n\n\n Presentation slides from BOSC (ISMB-ECCB) 2019: https://f1000research.com/slides/8-1183\n\n===========================================================================\n\n========\nCitation\n========\n\nChoudhary, Saket. \"pysradb: A Python Package to Query next-Generation Sequencing Metadata and Data from NCBI Sequence Read Archive.\" F1000Research, vol. 8, F1000 (Faculty of 1000 Ltd), Apr. 2019, p. 532 (https://f1000research.com/articles/8-532/v1)\n\n::\n\n    @article{Choudhary2019,\n    doi = {10.12688/f1000research.18676.1},\n    url = {https://doi.org/10.12688/f1000research.18676.1},\n    year = {2019},\n    month = apr,\n    publisher = {F1000 (Faculty of 1000 Ltd)},\n    volume = {8},\n    pages = {532},\n    author = {Saket Choudhary},\n    title = {pysradb: A {P}ython package to query next-generation sequencing metadata and data from {NCBI} {S}equence {R}ead {A}rchive},\n    journal = {F1000Research}\n    }\n\n\nZenodo archive: https://zenodo.org/badge/latestdoi/159590788\n\nZenodo DOI: 10.5281/zenodo.2306881\n"
  },
  {
    "path": "docs/installation.md",
    "content": "# Installation\n\n## Stable release\n\nTo install pysradb, run this command in your terminal:\n\n``` console\n$ pip install pysradb\n```\n\nThis is the preferred method to install pysradb, as it will always\ninstall the most recent stable release.\n\nIf you don\\'t have [pip](https://pip.pypa.io) installed, this [Python\ninstallation\nguide](http://docs.python-guide.org/en/latest/starting/installation/)\ncan guide you through the process.\n\nAlternatively, you may use conda:\n\n``` bash\nconda install -c bioconda pysradb\n```\n\nThis step will install all the dependencies except aspera-client (which\nis not required, but highly recommended). If you have an existing\nenvironment with a lot of pre-installed packages, conda might be\n[slow](https://github.com/bioconda/bioconda-recipes/issues/13774).\nPlease consider creating a new enviroment for `pysradb`:\n\n``` bash\nconda create -c bioconda -n pysradb PYTHON=3 pysradb\n```\n\n## From sources\n\nThe source files for pysradb can be downloaded from the [Github\nrepo](https://github.com/saketkc/pysradb).\n\nYou can either clone the public repository:\n\n``` console\n$ git clone git://github.com/saketkc/pysradb\n```\n\nOr download the\n[tarball](https://github.com/saketkc/pysradb/tarball/master):\n\n``` console\n$ curl  -OL https://github.com/saketkc/pysradb/tarball/master\n```\n\nOnce you have a copy of the source, you can install it with:\n\n``` console\n$ python setup.py install\n```\n"
  },
  {
    "path": "docs/make.bat",
    "content": "@ECHO OFF\n\npushd %~dp0\n\nREM Command file for Sphinx documentation\n\nif \"%SPHINXBUILD%\" == \"\" (\n\tset SPHINXBUILD=python -msphinx\n)\nset SOURCEDIR=.\nset BUILDDIR=_build\nset SPHINXPROJ=pysradb\n\nif \"%1\" == \"\" goto help\n\n%SPHINXBUILD% >NUL 2>NUL\nif errorlevel 9009 (\n\techo.\n\techo.The Sphinx module was not found. Make sure you have Sphinx installed,\n\techo.then set the SPHINXBUILD environment variable to point to the full\n\techo.path of the 'sphinx-build' executable. Alternatively you may add the\n\techo.Sphinx directory to PATH.\n\techo.\n\techo.If you don't have Sphinx installed, grab it from\n\techo.http://sphinx-doc.org/\n\texit /b 1\n)\n\n%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%\ngoto end\n\n:help\n%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%\n\n:end\npopd\n"
  },
  {
    "path": "docs/modules.rst",
    "content": "pysradb\n=======\n\n.. toctree::\n   :maxdepth: 4\n\n   pysradb\n"
  },
  {
    "path": "docs/notebooks.rst",
    "content": "Tutorials & Notebooks\n=====================\n\nThe following Jupyter notebooks demonstrate various features of pysradb:\n\n.. toctree::\n   :maxdepth: 1\n   :caption:\n\n   notebooks/README\n   notebooks/01.Python-API_demo.ipynb\n   notebooks/02.Commandline_download.ipynb\n   notebooks/03.ParallelDownload.ipynb\n   notebooks/04.SRA_to_fastq_conda.ipynb\n   notebooks/05.Downloading_subsets_of_a_project.ipynb\n   notebooks/06.Multiple_SRPs.ipynb\n   notebooks/07.Query_Search.ipynb\n   notebooks/08.PMC_DOI_Identifiers.ipynb\n   notebooks/09.Metadata_enrichment.ipynb\n\nYou can also view the complete `notebooks directory on GitHub <https://github.com/saketkc/pysradb/tree/develop/notebooks>`_ for additional tutorials and examples.\n"
  },
  {
    "path": "docs/pysradb.rst",
    "content": "pysradb package\n===============\n\nSubmodules\n----------\n\npysradb.basedb module\n---------------------\n\n.. automodule:: pysradb.basedb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.cli module\n------------------\n\n.. automodule:: pysradb.cli\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.download module\n-----------------------\n\n.. automodule:: pysradb.download\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.exceptions module\n-------------------------\n\n.. automodule:: pysradb.exceptions\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.filter\\_attrs module\n----------------------------\n\n.. automodule:: pysradb.filter_attrs\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.geodb module\n--------------------\n\n.. automodule:: pysradb.geodb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.geoweb module\n---------------------\n\n.. automodule:: pysradb.geoweb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.metadata\\_enrichment module\n-----------------------------------\n\n.. automodule:: pysradb.metadata_enrichment\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.search module\n---------------------\n\n.. automodule:: pysradb.search\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.sradb module\n--------------------\n\n.. automodule:: pysradb.sradb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.sraweb module\n---------------------\n\n.. automodule:: pysradb.sraweb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.taxid2name module\n-------------------------\n\n.. automodule:: pysradb.taxid2name\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\npysradb.utils module\n--------------------\n\n.. automodule:: pysradb.utils\n   :members:\n   :undoc-members:\n   :show-inheritance:\n\nModule contents\n---------------\n\n.. automodule:: pysradb\n   :members:\n   :undoc-members:\n   :show-inheritance:\n"
  },
  {
    "path": "docs/python-api-usage.md",
    "content": "# Python API \n\n## Use Case 1: Fetch the metadata table (SRA-runtable)\n\nThe simplest use case of [pysradb]{.title-ref} is when you know the SRA\nproject ID (SRP) and would simply want to fetch the metadata associated\nwith it. This is generally reflected in the\n[SraRunTable.txt]{.title-ref} that you get from NCBI\\'s website. See an\n[example](https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRP098789) of a\nSraRunTable.\n\n``` python\nfrom pysradb import SRAweb\nclient = SRAweb()\ndf = client.sra_metadata('SRP098789')\ndf.head()\n```\n\n    ===============  ====================  ======================================================================  =============  ========  =================  ==============  ================  ==============  ============  ==========  ========  ============  ===============\n    study_accession  experiment_accession                             experiment_title                             run_accession  taxon_id  library_selection  library_layout  library_strategy  library_source  library_name    bases      spots    adapter_spec  avg_read_length\n    ===============  ====================  ======================================================================  =============  ========  =================  ==============  ================  ==============  ============  ==========  ========  ============  ===============\n    SRP098789        SRX2536403            GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1; Homo sapiens; OTHER  SRR5227288         9606  other              SINGLE -        OTHER             TRANSCRIPTOMIC                2104142750  42082855                             50\n    SRP098789        SRX2536404            GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2; Homo sapiens; OTHER  SRR5227289         9606  other              SINGLE -        OTHER             TRANSCRIPTOMIC                2082873050  41657461                             50\n    SRP098789        SRX2536405            GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3; Homo sapiens; OTHER  SRR5227290         9606  other              SINGLE -        OTHER             TRANSCRIPTOMIC                2023148650  40462973                             50\n    SRP098789        SRX2536406            GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1; Homo sapiens; OTHER  SRR5227291         9606  other              SINGLE -        OTHER             TRANSCRIPTOMIC                2057165950  41143319                             50\n    SRP098789        SRX2536407            GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2; Homo sapiens; OTHER  SRR5227292         9606  other              SINGLE -        OTHER             TRANSCRIPTOMIC                3027621850  60552437                             50\n    ===============  ====================  ======================================================================  =============  ========  =================  ==============  ================  ==============  ============  ==========  ========  ============  ===============\n\nThe metadata is returned as a [pandas]{.title-ref} dataframe and hence\nallows you to perform all regular select/query operations available\nthrough [pandas]{.title-ref}.\n\n## Use Case 2: Downloading an entire project arranged experiment wise\n\nOnce you have fetched the metadata and made sure, this is the project\nyou were looking for, you would want to download everything at once.\nNCBI follows this hiererachy: [SRP =\\> SRX =\\> SRR]{.title-ref}. Each\n[SRP]{.title-ref} (project) has multiple [SRX]{.title-ref} (experiments)\nand each [SRX]{.title-ref} in turn has multiple [SRR]{.title-ref} (runs)\ninside it. We want to mimick this hiereachy in our downloads. The reason\nto do that is simple: in most cases you care about [SRX]{.title-ref} the\nmost, and would want to \\\"merge\\\" your SRRs in one way or the other.\nHaving this hierearchy ensures your downstream code can handle such\ncases easily, without worrying about which runs (SRR) need to be merged.\n\nWe strongly recommend installing [aspera-client]{.title-ref} which uses\nUDP and is [designed to be faster](http://www.skullbox.net/tcpudp.php).\n\n``` python\nfrom pysradb import SRAweb\nclient = SRAweb()\ndf = client.sra_metadata('SRP017942')\nclient.download(df)\n```\n\n## Use Case 3: Downloading a subset of experiments\n\nOften, you need to process only a smaller set of samples from a project\n(SRP). Consider this project which has data spanning four assays.\n\n``` python\ndf = client.sra_metadata('SRP000941')\nprint(df.library_strategy.unique())\n['ChIP-Seq' 'Bisulfite-Seq' 'RNA-Seq' 'WGS' 'OTHER']\n```\n\nBut, you might be only interested in analyzing the [RNA-seq]{.title-ref}\nsamples and would just want to download that subset. This is simple\nusing [pysradb]{.title-ref} since the metadata can be subset just as you\nwould subset a dataframe in pandas.\n\n``` python\ndf_rna = df[df.library_strategy == 'RNA-Seq']\nclient.download(df=df_rna, out_dir='/pysradb_downloads')()\n```\n\n## Use Case 4: Getting cell-type/treatment information from sample_attributes\n\nCell type/tissue informations is usually hidden in the\n[sample_attributes]{.title-ref} column, which can be expanded:\n\n``` python\nfrom pysradb.filter_attrs import expand_sample_attribute_columns\ndf = client.sra_metadata('SRP017942')\nexpand_sample_attribute_columns(df).head()\n```\n\n<table>\n<thead>\n<tr class=\"header\">\n<th>study_accession</th>\n<th>experiment_accession</th>\n<th>experiment_title</th>\n<th>experiment_attribute</th>\n<th>sample_attribute</th>\n<th>run_accession</th>\n<th>taxon_id</th>\n<th>library_selection</th>\n<th>library_layout</th>\n<th>library_strategy</th>\n<th>library_source</th>\n<th>library_name</th>\n<th>bases</th>\n<th>spots</th>\n<th>adapter_spec</th>\n<th>avg_read_length</th>\n<th>assay_type</th>\n<th>cell_line</th>\n<th>source_name</th>\n<th>transfected_with</th>\n<th>treatment</th>\n</tr>\n</thead>\n<tbody>\n<tr class=\"odd\">\n<td><p>SRP017942 SRP017942 SRP017942 SRP017942 SRP017942</p></td>\n<td><p>SRX217028 SRX217029 SRX217030 SRX217031 SRX217956</p></td>\n<td><p>GSM1063575: 293T_GFP; Homo sapiens; RNA-Seq GSM1063576:\n293T_GFP_2hrs_severe_Heat_Shock; Homo sapiens; RNA-Seq GSM1063577:\n293T_Hspa1a; Homo sapiens; RNA-Seq GSM1063578:\n293T_Hspa1a_2hrs_severe_Heat_Shock; Homo sapiens; RNA-Seq GSM794854:\n3T3-Control-Riboseq; Mus musculus; RNA-Seq</p></td>\n<td><p>GEO Accession: GSM1063575 GEO Accession: GSM1063576 GEO\nAccession: GSM1063577 GEO Accession: GSM1063578 GEO Accession:\nGSM794854</p></td>\n<td><p>source_name: 293T cells || cell line: 293T cells || transfected\nwith: 3XFLAG-GFP || assay type: Riboseq source_name: 293T cells || cell\nline: 293T cells || transfected with: 3XFLAG-GFP || treatment: severe\nheat shock (44C 2 hours) || assay type: Riboseq source_name: 293T cells\n|| cell line: 293T cells || transfected with: 3XFLAG-Hspa1a || assay\ntype: Riboseq source_name: 293T cells || cell line: 293T cells ||\ntransfected with: 3XFLAG-Hspa1a || treatment: severe heat shock (44C 2\nhours) || assay type: Riboseq source_name: 3T3 cells || treatment:\ncontrol || cell line: 3T3 cells || assay type: Riboseq</p></td>\n<td><p>SRR648667 SRR648668 SRR648669 SRR648670 SRR649752</p></td>\n<td><blockquote>\n<p>9606 9606 9606 9606 10090</p>\n</blockquote></td>\n<td><p>other other other other cDNA</p></td>\n<td><p>SINGLE -SINGLE -SINGLE -SINGLE -SINGLE -</p></td>\n<td><p>RNA-Seq RNA-Seq RNA-Seq RNA-Seq RNA-Seq</p></td>\n<td><p>TRANSCRIPTOMIC TRANSCRIPTOMIC TRANSCRIPTOMIC TRANSCRIPTOMIC\nTRANSCRIPTOMIC</p></td>\n<td></td>\n<td><p>1806641316 3436984836 3330909216 3622123512 594945396</p></td>\n<td><blockquote>\n<p>50184481 95471801 92525256</p>\n</blockquote>\n<dl>\n<dt>100614542</dt>\n<dd>\n<p>16526261</p>\n</dd>\n</dl></td>\n<td></td>\n<td><blockquote>\n<p>36 36 36 36 36</p>\n</blockquote></td>\n<td><p>riboseq riboseq riboseq riboseq riboseq</p></td>\n<td><p>293t cells 293t cells 293t cells 293t cells 3t3 cells</p></td>\n<td><p>293t cells 293t cells 293t cells 293t cells 3t3 cells</p></td>\n<td><p>3xflag-gfp 3xflag-gfp 3xflag-hspa1a 3xflag-hspa1a NaN</p></td>\n<td><p>NaN severe heat shock (44c 2 hours) NaN severe heat shock (44c 2\nhours) control</p></td>\n</tr>\n</tbody>\n</table>\n\n## Use Case 5: Searching for datasets\n\nAnother common operation that we do on SRA is seach, plain text search.\n\nIf you want to look up for all projects where [ribosome\nprofiling]{.title-ref} appears somewhere in the description:\n\n``` python\ndf = client.search_sra(search_str='\"ribosome profiling\"')\ndf.head()\n```\n\n<table>\n<thead>\n<tr class=\"header\">\n<th>study_accession</th>\n<th>experiment_accession</th>\n<th>experiment_title</th>\n<th>run_accession</th>\n<th>taxon_id</th>\n<th>library_selection</th>\n<th>library_layout</th>\n<th>library_strategy</th>\n<th>library_source</th>\n<th>library_name</th>\n<th>bases</th>\n<th>spots</th>\n</tr>\n</thead>\n<tbody>\n<tr class=\"odd\">\n<td>DRP003075</td>\n<td>DRX019536</td>\n<td>Illumina Genome Analyzer IIx sequencing of SAMD00018584</td>\n<td>DRR021383</td>\n<td><blockquote>\n<p>83333</p>\n</blockquote></td>\n<td>other</td>\n<td>SINGLE -</td>\n<td>OTHER</td>\n<td>TRANSCRIPTOMIC</td>\n<td>GAII05_3</td>\n<td><blockquote>\n<p>978776480</p>\n</blockquote></td>\n<td>12234706</td>\n</tr>\n<tr class=\"even\">\n<td>DRP003075</td>\n<td>DRX019537</td>\n<td>Illumina Genome Analyzer IIx sequencing of SAMD00018585</td>\n<td>DRR021384</td>\n<td><blockquote>\n<p>83333</p>\n</blockquote></td>\n<td>other</td>\n<td>SINGLE -</td>\n<td>OTHER</td>\n<td>TRANSCRIPTOMIC</td>\n<td>GAII05_4</td>\n<td><blockquote>\n<p>894201680</p>\n</blockquote></td>\n<td>11177521</td>\n</tr>\n<tr class=\"odd\">\n<td>DRP003075</td>\n<td>DRX019538</td>\n<td>Illumina Genome Analyzer IIx sequencing of SAMD00018586</td>\n<td>DRR021385</td>\n<td><blockquote>\n<p>83333</p>\n</blockquote></td>\n<td>other</td>\n<td>SINGLE -</td>\n<td>OTHER</td>\n<td>TRANSCRIPTOMIC</td>\n<td>GAII05_5</td>\n<td><blockquote>\n<p>931536720</p>\n</blockquote></td>\n<td>11644209</td>\n</tr>\n<tr class=\"even\">\n<td>DRP003075</td>\n<td>DRX019540</td>\n<td>Illumina Genome Analyzer IIx sequencing of SAMD00018588</td>\n<td>DRR021387</td>\n<td><blockquote>\n<p>83333</p>\n</blockquote></td>\n<td>other</td>\n<td>SINGLE -</td>\n<td>OTHER</td>\n<td>TRANSCRIPTOMIC</td>\n<td>GAII07_4</td>\n<td>2759398700</td>\n<td>27593987</td>\n</tr>\n<tr class=\"odd\">\n<td>DRP003075</td>\n<td>DRX019541</td>\n<td>Illumina Genome Analyzer IIx sequencing of SAMD00018589</td>\n<td>DRR021388</td>\n<td><blockquote>\n<p>83333</p>\n</blockquote></td>\n<td>other</td>\n<td>SINGLE -</td>\n<td>OTHER</td>\n<td>TRANSCRIPTOMIC</td>\n<td>GAII07_5</td>\n<td>2386196500</td>\n<td>23861965</td>\n</tr>\n</tbody>\n</table>\n\nAgain, the results are available as a [pandas]{.title-ref} dataframe and\nhence you can perform all subset operations post your query. Your query\ndoesn\\'t need to be exact.\n\n## Use Case 8: Finding publications (PMIDs) associated with SRA data\n\nSometimes you have SRA accessions and want to find the publications that describe the data generation.\n\n``` python\nfrom pysradb import SRAweb\nclient = SRAweb()\n\n# Get PMIDs for a study accession (SRP)\npmids_df = client.srp_to_pmid('SRP002605')\npmids_df.head()\n```\n\n    sra_accession   bioproject      pmid\n    SRP002605      PRJNA129385   20703300\n\nYou can also get PMIDs for other SRA accession types:\n\n``` python\n# Get PMIDs for run accessions (SRR)\nsrr_pmids = client.srr_to_pmid('SRR057511')\n\n# Get PMIDs for experiment accessions (SRX) \nsrx_pmids = client.srx_to_pmid('SRX021967')\n\n# Get PMIDs for sample accessions (SRS)\nsrs_pmids = client.srs_to_pmid('SRS079386')\n\n# Get PMIDs for multiple accessions at once\nmulti_pmids = client.sra_to_pmid(['SRP002605', 'SRP016501'])\n```\n\nYou can also directly query BioProject accessions for their associated publications:\n\n``` python  \n# Get PMIDs directly from BioProject accessions\nbioproject_pmids = client.fetch_bioproject_pmids(['PRJNA257197', 'PRJNA129385'])\nprint(bioproject_pmids)\n# Output: {'PRJNA257197': ['25214632'], 'PRJNA129385': ['20703300']}\n```\n\n**Note**: This functionality relies on the cross-references maintained between BioProjects and PubMed. Not all SRA datasets have associated publications, and some publications may not be properly cross-referenced in the NCBI databases. The success rate depends on:\n\n- Whether the authors included SRA/BioProject accessions in their manuscript\n- Whether NCBI has established the cross-references \n- The publication date relative to data submission\n\n"
  },
  {
    "path": "docs/quickstart.md",
    "content": "# Quickstart\n\nMost features in `pysradb` are accessible both from the command-line and\nas a python package. `pysradb` usage on the two platforms will be\ndisplayed by selecting the corresponding tab below.\n\n```{note}\nIf you have any questions along the way, please head over to the\n[Python API Usage](python-api-usage.md) or the\n[Command Line](cmdline.md) for more information. You may\nalso wish to refer to the [API Documentation](commands.rst).\n```\n\n------------------------------------------------------------------------\n\n## Notebooks\n\nA Google Colaboratory version of most used commands are available in\nthis [Colab\nNotebook](https://colab.research.google.com/drive/1C60V-jkcNZiaCra_V5iEyFs318jgVoUR)\n. Colab runs Python 3.6 while `pysradb` requires Python 3.7+ and hence\nthe notebooks no longer run on Colab, but can be downloaded and run\nlocally.\n\nThe following notebooks document all the possible features of `pysradb`:\n\n1.  [Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/01.Python-API_demo.ipynb)\n2.  [Downloading datasets from SRA - command\n    line](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/02.Commandline_download.ipynb)\n3.  [Parallely download multiple datasets - Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/03.ParallelDownload.ipynb)\n4.  [Converting SRA-to-fastq - command line (requires\n    conda)](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/04.SRA_to_fastq_conda.ipynb)\n5.  [Downloading subsets of a project - Python\n    API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/05.Downloading_subsets_of_a_project.ipynb)\n6.  [Download\n    BAMs](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/06.Download_BAMs.ipynb)\n7.  [Metadata for multiple\n    SRPs](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/07.Multiple_SRPs.ipynb)\n8.  [Multithreaded fastq downloads using Aspera\n    Client](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/08.pysradb_ascp_multithreaded.ipynb)\n9.  [Searching\n    SRA/GEO/ENA](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/09.Query_Search.ipynb)\n\n## Metadata\n\n`pysradb` makes it very easy to obtain metadata from SRA/EBI:\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb metadata SRP265425\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.metadata(\"SRP265425\")\ndf\n```\n````\n`````\n\nOutput:\n\n    study_accession experiment_accession    experiment_title    experiment_desc organism_taxid  organism_name   library_name    library_strategy    library_source  library_selection   library_layout  sample_accession    sample_title    instrument  instrument_model    instrument_model_desc   total_spots total_size  run_accession   run_total_spots run_total_bases\n    SRP265425   SRX8434255  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 63-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745319      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1311358 83306910    SRR11886735 1311358 109594216\n    SRP265425   SRX8434254  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 62-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745320      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2614109 204278682   SRR11886736 2614109 262305651\n    SRP265425   SRX8434253  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 61-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745318      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2286312 183516004   SRR11886737 2286312 263304134\n    SRP265425   SRX8434252  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 60-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745317      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5202567 507524965   SRR11886738 5202567 781291588\n    SRP265425   SRX8434251  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 38-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745315      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 3313960 356104406   SRR11886739 3313960 612430817\n    SRP265425   SRX8434250  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 37-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745316      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5155733 565882351   SRR11886740 5155733 954342917\n    SRP265425   SRX8434249  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 36-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745313      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1324589 175619046   SRR11886741 1324589 216531400\n    SRP265425   SRX8434248  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 35-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745314      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1639851 198973268   SRR11886742 1639851 245466005\n    SRP265425   SRX8434247  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 68-2020-05-07   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745312      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 3921389 210198580   SRR11886743 3921389 332935558\n    SRP265425   SRX8434246  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 66-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745311      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 14295475    2150005008  SRR11886744 14295475    2967829315\n    SRP265425   SRX8434245  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 65-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745310      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5124692 294846140   SRR11886745 5124692 431819462\n    SRP265425   SRX8434244  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 64-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745309      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2986306 205666872   SRR11886746 2986306 275400959\n    SRP265425   SRX8434243  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 34-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745308      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1182690 59471336    SRR11886747 1182690 86350631\n    SRP265425   SRX8434242  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 33-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745307      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 6031816 749323230   SRR11886748 6031816 928054297\n\nAdditionally to obtain locations of `.fastq/.sra` files and other\nmetadata:\n\n`pysradb` makes it very easy to obtain metadata from SRA/EBI:\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb metadata SRP265425 --detailed\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.metadata(\"SRP265425\", detailed=True)\ndf\n```\n````\n`````\n\nOutput:\n\n    run_accession   study_accession experiment_accession    experiment_title    experiment_desc organism_taxid  organism_name   library_name    library_strategy    library_source  library_selection   library_layout  sample_accession    sample_title    instrument  instrument_model    instrument_model_desc   total_spots total_size  run_total_spots run_total_bases run_alias   sra_url_alt1    sra_url_alt2    sra_url experiment_alias    isolate collected_by    collection_date geo_loc_name    host    host_disease    isolation_source    lat_lon BioSampleModel  sra_url_alt3    ena_fastq_http  ena_fastq_http_1    ena_fastq_http_2    ena_fastq_ftp   ena_fastq_ftp_1 ena_fastq_ftp_2\n    SRR11886735 SRP265425   SRX8434255  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 63-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745319      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1311358 83306910    1311358 109594216   IonXpress_063_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam  gs://sra-pub-src-9/SRR11886735/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886735/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   https://sra-download.ncbi.nlm.nih.gov/traces/sra0/SRR/011608/SRR11886735        GC-20   NA  02-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/035/SRR11886735/SRR11886735.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/035/SRR11886735/SRR11886735.fastq.gz\n    SRR11886736 SRP265425   SRX8434254  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 62-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745320      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2614109 204278682   2614109 262305651   IonXpress_062_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam  gs://sra-pub-src-16/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra46/SRZ/011886/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra50/SRR/011608/SRR11886736       GC-51   NA  14-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886736/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/036/SRR11886736/SRR11886736.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/036/SRR11886736/SRR11886736.fastq.gz\n    SRR11886737 SRP265425   SRX8434253  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 61-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745318      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2286312 183516004   2286312 263304134   IonXpress_061_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam  gs://sra-pub-src-16/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra29/SRZ/011886/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra17/SRR/011608/SRR11886737       GC-24   NA  07-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886737/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/037/SRR11886737/SRR11886737.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/037/SRR11886737/SRR11886737.fastq.gz\n    SRR11886738 SRP265425   SRX8434252  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 60-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745317      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5202567 507524965   5202567 781291588   IonXpress_060_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam  gs://sra-pub-src-15/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam.1    https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRZ/011886/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam    https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/011608/SRR11886738       GC-23   NA  08-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886738/IonXpress_060_R_2020_04_22_15_56_22_user_GCEID_S5_58_SARS_CoV2_SA4.bam.1 http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/038/SRR11886738/SRR11886738.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/038/SRR11886738/SRR11886738.fastq.gz\n    SRR11886739 SRP265425   SRX8434251  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 38-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745315      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 3313960 356104406   3313960 612430817   IonXpress_038_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-13/SRR11886739/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886739/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   https://sra-download.ncbi.nlm.nih.gov/traces/sra24/SRR/011608/SRR11886739       GC-11b  NA  24-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/039/SRR11886739/SRR11886739.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/039/SRR11886739/SRR11886739.fastq.gz\n    SRR11886740 SRP265425   SRX8434250  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 37-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745316      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5155733 565882351   5155733 954342917   IonXpress_037_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-5/SRR11886740/IonXpress_037_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1 https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886740/IonXpress_037_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1 https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011608/SRR11886740       GC-14b  NA  28-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/040/SRR11886740/SRR11886740.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/040/SRR11886740/SRR11886740.fastq.gz\n    SRR11886741 SRP265425   SRX8434249  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 36-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745313      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1324589 175619046   1324589 216531400   IonXpress_036_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-11/SRR11886741/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886741/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   https://sra-download.ncbi.nlm.nih.gov/traces/sra57/SRR/011608/SRR11886741       GC-12   NA  24-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/041/SRR11886741/SRR11886741.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/041/SRR11886741/SRR11886741.fastq.gz\n    SRR11886742 SRP265425   SRX8434248  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 35-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745314      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1639851 198973268   1639851 245466005   IonXpress_035_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-11/SRR11886742/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886742/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRR/011608/SRR11886742       GC-13   NA  23-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/042/SRR11886742/SRR11886742.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/042/SRR11886742/SRR11886742.fastq.gz\n    SRR11886743 SRP265425   SRX8434247  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 68-2020-05-07   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745312      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 3921389 210198580   3921389 332935558   IonXpress_068_R_2020_05_07_11_47_51_user_GCEID-S5-60-SARS_CoV2_SA4.bam  gs://sra-pub-src-17/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra64/SRZ/011886/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra54/SRR/011608/SRR11886743       GC-55   NA  24-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886743/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/043/SRR11886743/SRR11886743.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/043/SRR11886743/SRR11886743.fastq.gz\n    SRR11886744 SRP265425   SRX8434246  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 66-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745311      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 14295475    2150005008  14295475    2967829315  IonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq    gs://sra-pub-src-11/SRR11886744/IonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq.1  https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886744/IonXpress_066_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.fastq.1   https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/011608/SRR11886744       GC-26   NA  07-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/044/SRR11886744/SRR11886744.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/044/SRR11886744/SRR11886744.fastq.gz\n    SRR11886745 SRP265425   SRX8434245  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 65-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745310      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 5124692 294846140   5124692 431819462   IonXpress_065_R_2020_04_22_11_10_56_user_GCEID-S5-57-SARS_CoV2_SA4.bam  gs://sra-pub-src-16/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra69/SRZ/011886/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/011608/SRR11886745       GC-25   NA  10-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886745/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/045/SRR11886745/SRR11886745.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/045/SRR11886745/SRR11886745.fastq.gz\n    SRR11886746 SRP265425   SRX8434244  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 64-2020-04-22   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745309      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 2986306 205666872   2986306 275400959   IonXpress_064_R_2020_04_22_15_56_22_user_GCEID-S5-58-SARS_CoV2_SA4.bam  gs://sra-pub-src-17/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra59/SRZ/011886/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra47/SRR/011608/SRR11886746       GC-21   NA  03-Apr-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886746/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/046/SRR11886746/SRR11886746.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/046/SRR11886746/SRR11886746.fastq.gz\n    SRR11886747 SRP265425   SRX8434243  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 34-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745308      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 1182690 59471336    1182690 86350631    IonXpress_034_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-16/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1  https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRZ/011886/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta  https://sra-download.ncbi.nlm.nih.gov/traces/sra13/SRR/011608/SRR11886747       GC-11a  NA  24-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886747/Wuhan_Hu_1_NC_045512_21500_and_subgenomics_SA4.fasta.1   http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/047/SRR11886747/SRR11886747.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/047/SRR11886747/SRR11886747.fastq.gz\n    SRR11886748 SRP265425   SRX8434242  Ampliseq of SARS-CoV-2  Ampliseq of SARS-CoV-2  2697049 Severe acute respiratory syndrome coronavirus 2 33-2020-04-03   AMPLICON    VIRAL RNA   RT-PCR  SINGLE  SRS6745307      Ion Torrent S5 XL   Ion Torrent S5 XL   ION_TORRENT 6031816 749323230   6031816 928054297   IonXpress_033_R_2020_04_03_10_09_05_user_GCEID-S5-55-SARS_CoV2_SA4.bam  gs://sra-pub-src-15/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1    https://sra-download.ncbi.nlm.nih.gov/traces/sra43/SRZ/011886/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam    https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/011608/SRR11886748       GC-14a  NA  28-Mar-2020 Australia: Victoria Homo sapiens    COVID-19    swab    NA  Pathogen.cl https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR11886748/IonXpress_033_R_2020_04_03_10_09_05_user_GCEID_S5_55_SARS_CoV2_SA4.bam.1 http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/048/SRR11886748/SRR11886748.fastq.gz         era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR118/048/SRR11886748/SRR11886748.fastq.gz\n\n## Converting between accession numbers\n\n`pysradb` provides a suite of commands for interoperability between\nconversion numbers.\n\n### Convert SRP to SRX\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb srp-to-srx SRP098789\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.srp-to-srx(\"SRP098789\")\ndf\n```\n````\n`````\n\nOutput:\n\n    study_accession experiment_accession    experiment_title        experiment_desc organism_taxid  organism_name   library_strategy        library_source  library_selection       sample_accession        sample_title    instrument      total_spots     total_size      run_accession   run_total_spots run_total_bases study_accesssion\n    SRP098789       SRX2536428      GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Homo sapiens; RNA-Seq       GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Homo sapiens; RNA-Seq       9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956378      Illumina HiSeq 2500     69422931        1545681856      SRR5227313      69422931        3540569481      SRP098789\n    SRP098789       SRX2536427      GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-seq; Homo sapiens; OTHER   GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-seq; Homo sapiens; OTHER   9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956377      Illumina HiSeq 2500     58065134        1302369810      SRR5227312      58065134        2961321834      SRP098789\n    SRP098789       SRX2536426      GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Homo sapiens; RNA-Seq       GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Homo sapiens; RNA-Seq       9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956376      Illumina HiSeq 2500     63720205        1416818619      SRR5227311      63720205        3249730455      SRP098789\n    SRP098789       SRX2536425      GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-seq; Homo sapiens; OTHER   GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-seq; Homo sapiens; OTHER   9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956375      Illumina HiSeq 2500     66363585        1482728577      SRR5227310      66363585        3384542835      SRP098789\n    SRP098789       SRX2536424      GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; Homo sapiens; RNA-Seq      GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; Homo sapiens; RNA-Seq      9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956374      Illumina HiSeq 2500     40062613        904488287       SRR5227309      40062613        2043193263      SRP098789\n    SRP098789       SRX2536423      GSM2476017: 1.5 ?M PF-067446846, 60 min, rep 5 -riboseq; Homo sapiens; OTHER    GSM2476017: 1.5 ?M PF-067446846, 60 min, rep 5 -riboseq; Homo sapiens; OTHER    9606    Homo sapiens    OTHER   TRANSCRIPTOMIC other    SRS1956373      Illumina HiSeq 2500     65591217        1499668100      SRR5227308      65591217        3345152067      SRP098789\n    SRP098789       SRX2536422      GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; Homo sapiens; RNA-Seq      GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; Homo sapiens; RNA-Seq      9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956372      Illumina HiSeq 2500     66480991        1564636133      SRR5227307      66480991        3390530541      SRP098789\n    SRP098789       SRX2536421      GSM2476015: 1.5 ?M PF-067446846, 60 min, rep 4 -riboseq; Homo sapiens; OTHER    GSM2476015: 1.5 ?M PF-067446846, 60 min, rep 4 -riboseq; Homo sapiens; OTHER    9606    Homo sapiens    OTHER   TRANSCRIPTOMIC other    SRS1956371      Illumina HiSeq 2500     57588015        1357395400      SRR5227306      57588015        2936988765      SRP098789\n    SRP098789       SRX2536420      GSM2476014: vehicle, 60 min rep 3; Homo sapiens; OTHER  GSM2476014: vehicle, 60 min rep 3; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956370      Illumina HiSeq 2000    48405034 1530784033      SRR5227305      48405034        2420251700      SRP098789\n    SRP098789       SRX2536419      GSM2476013: vehicle, 60 min rep 2; Homo sapiens; OTHER  GSM2476013: vehicle, 60 min rep 2; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956369      Illumina HiSeq 2000    47139057 1489018603      SRR5227304      47139057        2356952850      SRP098789\n    SRP098789       SRX2536418      GSM2476012: vehicle, 60 min rep 1; Homo sapiens; OTHER  GSM2476012: vehicle, 60 min rep 1; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956368      Illumina HiSeq 2000    50956178 1495757884      SRR5227303      50956178        2547808900      SRP098789\n    SRP098789       SRX2536417      GSM2476011: 0.3 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     GSM2476011: 0.3 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956367      Illumina HiSeq 2000     44258180        1404548468      SRR5227302      44258180        2212909000      SRP098789\n    SRP098789       SRX2536416      GSM2476010: 0.3 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     GSM2476010: 0.3 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956366      Illumina HiSeq 2000     49129512        1536091510      SRR5227301      49129512        2456475600      SRP098789\n    SRP098789       SRX2536415      GSM2476009: 0.3 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     GSM2476009: 0.3 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956365      Illumina HiSeq 2000     30043362        903983724       SRR5227300      30043362        1502168100      SRP098789\n    SRP098789       SRX2536414      GSM2476008: 1.5 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     GSM2476008: 1.5 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956364      Illumina HiSeq 2000     48766213        1530350854      SRR5227299      48766213        2438310650      SRP098789\n    SRP098789       SRX2536413      GSM2476007: 1.5 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     GSM2476007: 1.5 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956363      Illumina HiSeq 2000     49334392        1475414353      SRR5227298      49334392        2466719600      SRP098789\n    SRP098789       SRX2536412      GSM2476006: 1.5 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     GSM2476006: 1.5 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956362      Illumina HiSeq 2000     60381365        1801283052      SRR5227297      60381365        3019068250      SRP098789\n    SRP098789       SRX2536411      GSM2476005: vehicle, 10 min rep 3; Homo sapiens; OTHER  GSM2476005: vehicle, 10 min rep 3; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956361      Illumina HiSeq 2000    52737784 1644829192      SRR5227296      52737784        2636889200      SRP098789\n    SRP098789       SRX2536410      GSM2476004: vehicle, 10 min rep 2; Homo sapiens; OTHER  GSM2476004: vehicle, 10 min rep 2; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956360      Illumina HiSeq 2000    46137148 1455541408      SRR5227295      46137148        2306857400      SRP098789\n    SRP098789       SRX2536409      GSM2476003: vehicle, 10 min rep 1; Homo sapiens; OTHER  GSM2476003: vehicle, 10 min rep 1; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956359      Illumina HiSeq 2000    76002122 1552821132      SRR5227294      76002122        3800106100      SRP098789\n    SRP098789       SRX2536408      GSM2476002: 0.3 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     GSM2476002: 0.3 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956358      Illumina HiSeq 2000     42709138        1338829352      SRR5227293      42709138        2135456900      SRP098789\n    SRP098789       SRX2536407      GSM2476001: 0.3 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     GSM2476001: 0.3 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956357      Illumina HiSeq 2000     60552437        1875910244      SRR5227292      60552437        3027621850      SRP098789\n    SRP098789       SRX2536406      GSM2476000: 0.3 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     GSM2476000: 0.3 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956356      Illumina HiSeq 2000     41143319        843881081       SRR5227291      41143319        2057165950      SRP098789\n    SRP098789       SRX2536405      GSM2475999: 1.5 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     GSM2475999: 1.5 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956355      Illumina HiSeq 2000     40462973        1287284933      SRR5227290      40462973        2023148650      SRP098789\n    SRP098789       SRX2536404      GSM2475998: 1.5 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     GSM2475998: 1.5 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956354      Illumina HiSeq 2000     41657461        1360366732      SRR5227289      41657461        2082873050      SRP098789\n    SRP098789       SRX2536403      GSM2475997: 1.5 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     GSM2475997: 1.5 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956353      Illumina HiSeq 2000     42082855        916745706       SRR5227288      42082855        2104142750      SRP098789\n\n### Convert GSE to SRP\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb srp-to-srx SRP098789\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.srp-to-srx(\"SRP098789\")\ndf\n```\n````\n`````\n\nOutput:\n\n    study_accession experiment_accession    experiment_title        experiment_desc organism_taxid  organism_name   library_strategy        library_source  library_selection       sample_accession        sample_title    instrument      total_spots     total_size      run_accession   run_total_spots run_total_bases study_accesssion\n    SRP098789       SRX2536428      GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Homo sapiens; RNA-Seq       GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Homo sapiens; RNA-Seq       9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956378      Illumina HiSeq 2500     69422931        1545681856      SRR5227313      69422931        3540569481      SRP098789\n    SRP098789       SRX2536427      GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-seq; Homo sapiens; OTHER   GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-seq; Homo sapiens; OTHER   9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956377      Illumina HiSeq 2500     58065134        1302369810      SRR5227312      58065134        2961321834      SRP098789\n    SRP098789       SRX2536426      GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Homo sapiens; RNA-Seq       GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Homo sapiens; RNA-Seq       9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956376      Illumina HiSeq 2500     63720205        1416818619      SRR5227311      63720205        3249730455      SRP098789\n    SRP098789       SRX2536425      GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-seq; Homo sapiens; OTHER   GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-seq; Homo sapiens; OTHER   9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956375      Illumina HiSeq 2500     66363585        1482728577      SRR5227310      66363585        3384542835      SRP098789\n    SRP098789       SRX2536424      GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; Homo sapiens; RNA-Seq      GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; Homo sapiens; RNA-Seq      9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956374      Illumina HiSeq 2500     40062613        904488287       SRR5227309      40062613        2043193263      SRP098789\n    SRP098789       SRX2536423      GSM2476017: 1.5 ?M PF-067446846, 60 min, rep 5 -riboseq; Homo sapiens; OTHER    GSM2476017: 1.5 ?M PF-067446846, 60 min, rep 5 -riboseq; Homo sapiens; OTHER    9606    Homo sapiens    OTHER   TRANSCRIPTOMIC other    SRS1956373      Illumina HiSeq 2500     65591217        1499668100      SRR5227308      65591217        3345152067      SRP098789\n    SRP098789       SRX2536422      GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; Homo sapiens; RNA-Seq      GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; Homo sapiens; RNA-Seq      9606    Homo sapiens    RNA-Seq TRANSCRIPTOMIC  cDNA    SRS1956372      Illumina HiSeq 2500     66480991        1564636133      SRR5227307      66480991        3390530541      SRP098789\n    SRP098789       SRX2536421      GSM2476015: 1.5 ?M PF-067446846, 60 min, rep 4 -riboseq; Homo sapiens; OTHER    GSM2476015: 1.5 ?M PF-067446846, 60 min, rep 4 -riboseq; Homo sapiens; OTHER    9606    Homo sapiens    OTHER   TRANSCRIPTOMIC other    SRS1956371      Illumina HiSeq 2500     57588015        1357395400      SRR5227306      57588015        2936988765      SRP098789\n    SRP098789       SRX2536420      GSM2476014: vehicle, 60 min rep 3; Homo sapiens; OTHER  GSM2476014: vehicle, 60 min rep 3; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956370      Illumina HiSeq 2000    48405034 1530784033      SRR5227305      48405034        2420251700      SRP098789\n    SRP098789       SRX2536419      GSM2476013: vehicle, 60 min rep 2; Homo sapiens; OTHER  GSM2476013: vehicle, 60 min rep 2; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956369      Illumina HiSeq 2000    47139057 1489018603      SRR5227304      47139057        2356952850      SRP098789\n    SRP098789       SRX2536418      GSM2476012: vehicle, 60 min rep 1; Homo sapiens; OTHER  GSM2476012: vehicle, 60 min rep 1; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956368      Illumina HiSeq 2000    50956178 1495757884      SRR5227303      50956178        2547808900      SRP098789\n    SRP098789       SRX2536417      GSM2476011: 0.3 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     GSM2476011: 0.3 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956367      Illumina HiSeq 2000     44258180        1404548468      SRR5227302      44258180        2212909000      SRP098789\n    SRP098789       SRX2536416      GSM2476010: 0.3 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     GSM2476010: 0.3 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956366      Illumina HiSeq 2000     49129512        1536091510      SRR5227301      49129512        2456475600      SRP098789\n    SRP098789       SRX2536415      GSM2476009: 0.3 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     GSM2476009: 0.3 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956365      Illumina HiSeq 2000     30043362        903983724       SRR5227300      30043362        1502168100      SRP098789\n    SRP098789       SRX2536414      GSM2476008: 1.5 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     GSM2476008: 1.5 ?M PF-067446846, 60 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956364      Illumina HiSeq 2000     48766213        1530350854      SRR5227299      48766213        2438310650      SRP098789\n    SRP098789       SRX2536413      GSM2476007: 1.5 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     GSM2476007: 1.5 ?M PF-067446846, 60 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956363      Illumina HiSeq 2000     49334392        1475414353      SRR5227298      49334392        2466719600      SRP098789\n    SRP098789       SRX2536412      GSM2476006: 1.5 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     GSM2476006: 1.5 ?M PF-067446846, 60 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956362      Illumina HiSeq 2000     60381365        1801283052      SRR5227297      60381365        3019068250      SRP098789\n    SRP098789       SRX2536411      GSM2476005: vehicle, 10 min rep 3; Homo sapiens; OTHER  GSM2476005: vehicle, 10 min rep 3; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956361      Illumina HiSeq 2000    52737784 1644829192      SRR5227296      52737784        2636889200      SRP098789\n    SRP098789       SRX2536410      GSM2476004: vehicle, 10 min rep 2; Homo sapiens; OTHER  GSM2476004: vehicle, 10 min rep 2; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956360      Illumina HiSeq 2000    46137148 1455541408      SRR5227295      46137148        2306857400      SRP098789\n    SRP098789       SRX2536409      GSM2476003: vehicle, 10 min rep 1; Homo sapiens; OTHER  GSM2476003: vehicle, 10 min rep 1; Homo sapiens; OTHER  9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956359      Illumina HiSeq 2000    76002122 1552821132      SRR5227294      76002122        3800106100      SRP098789\n    SRP098789       SRX2536408      GSM2476002: 0.3 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     GSM2476002: 0.3 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956358      Illumina HiSeq 2000     42709138        1338829352      SRR5227293      42709138        2135456900      SRP098789\n    SRP098789       SRX2536407      GSM2476001: 0.3 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     GSM2476001: 0.3 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956357      Illumina HiSeq 2000     60552437        1875910244      SRR5227292      60552437        3027621850      SRP098789\n    SRP098789       SRX2536406      GSM2476000: 0.3 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     GSM2476000: 0.3 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956356      Illumina HiSeq 2000     41143319        843881081       SRR5227291      41143319        2057165950      SRP098789\n    SRP098789       SRX2536405      GSM2475999: 1.5 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     GSM2475999: 1.5 ?M PF-067446846, 10 min, rep 3; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956355      Illumina HiSeq 2000     40462973        1287284933      SRR5227290      40462973        2023148650      SRP098789\n    SRP098789       SRX2536404      GSM2475998: 1.5 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     GSM2475998: 1.5 ?M PF-067446846, 10 min, rep 2; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956354      Illumina HiSeq 2000     41657461        1360366732      SRR5227289      41657461        2082873050      SRP098789\n    SRP098789       SRX2536403      GSM2475997: 1.5 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     GSM2475997: 1.5 ?M PF-067446846, 10 min, rep 1; Homo sapiens; OTHER     9606    Homo sapiens    OTHER   TRANSCRIPTOMIC  other   SRS1956353      Illumina HiSeq 2000     42082855        916745706       SRR5227288      42082855        2104142750      SRP098789\n\n------------------------------------------------------------------------\n\n## Downloading sequencing data\n\n`pysradb` can alse be used to download either `.fastq` or `.sra`\nfilesboth from ENA and SRA.\n\n### Downloading via accession number\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb download SRP098789\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\nclient.download(\"SRP098789\")\n```\n````\n`````\n\nIt is also possible to pipe the dataframe from [metadata]{.title-ref} or\n[search]{.title-ref} to download, after filtering the dataframe entries:\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb metadata SRP276671 --detailed | pysradb download\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\nclient = SRAweb()\ndf = client.sra_metadata('SRP016501', detailed=True)\nclient.download(df=df)\n```\n````\n`````\n\n### Ultrafast fastq downloads\n\nWith\n[aspera-client](https://downloads.asperasoft.com/en/downloads/8?list)\ninstalled, `pysradb` canan perform ultra fast downloads:\n\nTo download all original fastqs with [aspera-client]{.title-ref}\ninstalled utilizing 8 threads:\n\n`````{tabs}\n````{tab} Console\n``` console\n$ pysradb download -t 8 --use_ascp -p SRP002605\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\nclient.download(\"SRP098789\", use_ascp=True, threads=8)\n```\n````\n`````\n\nRefer to the notebook for [(shallow) time\nbenchmarks](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/08.pysradb_ascp_multithreaded.ipynb).\n\n------------------------------------------------------------------------\n\n## Search\n\n### Retrieving metadata by accession number\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb metadata SRP276671\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.sra_metadata('SRP016501')\ndf\n```\n````\n`````\n\nOutput:\n\n    study_accession experiment_accession    experiment_title        experiment_desc organism_taxid  organism_name   library_strategy        library_source  library_selection       sample_accession        sample_title    instrument      total_spots     total_size      run_accession   run_total_spots run_total_bases\n    SRP276671       SRX8978626      hCov-19/Canada/ON/VIDO01/2020 (EPI ISL 413015)  hCov-19/Canada/ON/VIDO01/2020 (EPI ISL 413015)  2697049 Severe acute respiratory syndrome coronavirus 2 WGS     GENOMIC RT-PCR  SRS7233795      MinION  96202  79690689 SRR12486810     96202   86575096\n    SRP276671       SRX8909137      hCoV-19/Canada/ON-VIDO-01/2020 (EPI_ISL_425177) hCoV-19/Canada/ON-VIDO-01/2020 (EPI_ISL_425177) 2697049 Severe acute respiratory syndrome coronavirus 2 WGS     GENOMIC RT-PCR  SRS7166526      Illumina MiSeq 866225   173474986       SRR12412952     866225  338457239\n\n::: note\n::: title\nNote\n:::\n\n[pysradb]{.title-ref}, when used in python, returns the retrieved\nmetadata as a [pandas]{.title-ref} DataFrame, with all regular\nselect/query operations available through [pandas]{.title-ref}.\n:::\n\nFor more detailed metadata (including download URLs), we can include the\n[detailed]{.title-ref} flag:\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb metadata SRP276671 --detailed\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.sraweb import SRAweb\n\nclient = SRAweb()\ndf = client.sra_metadata('SRP016501', detailed=True)\ndf\n```\n````\n`````\n\nOutput:\n\n    study_accession experiment_accession    experiment_title        experiment_desc organism_taxid  organism_name   library_strategy        library_source  library_selection       sample_accession        sample_title    instrument      total_spots     total_size      run_accession   run_total_spots run_total_bases run_alias       sra_url_alt     sra_url experiment_alias        isolate collected_by    collection_date geo_loc_name    host    host_disease    isolation_source       lat_lon  host_sex        host_subject_id passage_history BioSampleModel  sra_url_alt1    sra_url_alt2    sra_url_alt3   ena_fastq_http   ena_fastq_ftp\n    SRP276671       SRX8978626      hCov-19/Canada/ON/VIDO01/2020 (EPI ISL 413015)  hCov-19/Canada/ON/VIDO01/2020 (EPI ISL 413015)  2697049 Severe acute respiratory syndrome coronavirus 2 WGS     GENOMIC RT-PCR  SRS7233795      N/A     MinION 96202    79690689        SRR12486810     96202   86575096        VIDO-01.tar.gz  https://sra-download.ncbi.nlm.nih.gov/traces/sra1/SRZ/012486/SRR12486810/VIDO-01.tar.gz https://sra-download.ncbi.nlm.nih.gov/traces/sra78/SRR/012194/SRR12486810       N/A     ON-VIDO-01-P3   Public Health Ontario   2020-01-23      Canada: Ontario Homo sapiens    COVID-19       missing  missing male    VIDO-01 Vero E6 P3      Pathogen.cl     N/A     N/A     N/A     http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR124/010/SRR12486810/SRR12486810_1.fastq.gz       era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR124/010/SRR12486810/SRR12486810_1.fastq.gz\n    SRP276671       SRX8909137      hCoV-19/Canada/ON-VIDO-01/2020 (EPI_ISL_425177) hCoV-19/Canada/ON-VIDO-01/2020 (EPI_ISL_425177) 2697049 Severe acute respiratory syndrome coronavirus 2 WGS     GENOMIC RT-PCR  SRS7166526      N/A     Illumina MiSeq  866225  173474986       SRR12412952     866225  338457239       SP-2_R1.fastq.gz        N/A     https://sra-download.ncbi.nlm.nih.gov/traces/sra48/SRR/012122/SRR12412952       N/A     ON-VIDO-01-P2   Public Health Ontario   2020-01-23      Canada: Ontario Homo sapiens    COVID-19        missing missing male    VIDO-01 Vero E6 P2      Pathogen.cl    gs://sra-pub-src-10/SRR12412952/SP-2_R2.fastq.1  s3://sra-pub-src-10/SRR12412952/SP-2_R2.fastq.1 https://sra-pub-sars-cov2.s3.amazonaws.com/sra-src/SRR12412952/SP-2_R2.fastq.1  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR124/052/SRR12412952/SRR12412952.fastq.gz era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR124/052/SRR12412952/SRR12412952.fastq.gz\n\n------------------------------------------------------------------------\n\n### Searching SRA/ENA databases and retrieving metadata\n\nLet\\'s take for example we are interested in coronavirus sequences\npublished on Short Reads Archive (SRA) in the first week of August 2020.\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb search -q coronavirus --publication-date 01-08-2020:07-08-2020 --max 10000\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.search import SraSearch\n\ninstance = SraSearch(return_max=10000, query=\"coronavirus\", publication_date=\"01-08-2020:07-08-2020\")\ninstance.search()\ninstance.get_df()\n```\n````\n`````\n\nOutput (showing only the first 10 entries): :\n\n    study_accession  experiment_accession    experiment_title        sample_taxon_id sample_scientific_name  experiment_library_strategy     experiment_library_source       experiment_library_selection    sample_accession        sample_alias    experiment_instrument_model     pool_member_spots       run_1_size     run_1_accession  run_1_total_spots       run_1_total_bases       pmid\n    SRP270658       SRX8679965      GSM4658808: SARS-CoV-2-infected 24h 3; Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2; RNA-Seq    60711   Chlorocebus sabaeus     RNA-Seq TRANSCRIPTOMIC  cDNA    SRS6959042      GSM4658808      NextSeq 500     104223040       9743267247      SRR12164500     104223040       31475358080     11295714\n    SRP270658       SRX8679964      GSM4658807: SARS-CoV-2-infected 24h 2; Chlorocebus sabaeus; Severe acute respiratory syndrome coronavirus 2; RNA-Seq    60711   Chlorocebus sabaeus     RNA-Seq TRANSCRIPTOMIC  cDNA    SRS6959041      GSM4658807      NextSeq 500     92813819        8703506222      SRR12164499     92813819        28029773338     11295713\n    SRP253798       SRX8677889      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956975      hCoV-19/Australia/VIC1898/2020  NextSeq 500    456828   51422072        SRR12162149     456828  130280958       11292876\n    SRP253798       SRX8677888      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956974      hCoV-19/Australia/VIC1886/2020  NextSeq 500    268832   29923966        SRR12162150     268832  75885223        11292875\n    SRP253798       SRX8677887      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956973      hCoV-19/Australia/VIC1890/2020  NextSeq 500    483526   54629557        SRR12162151     483526  139019404       11292874\n    SRP253798       SRX8677886      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956971      hCoV-19/Australia/VIC1888/2020  NextSeq 500    473895   53675126        SRR12162152     473895  136058655       11292873\n    SRP253798       SRX8677885      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956972      hCoV-19/Australia/VIC1891/2020  NextSeq 500    482373   53331905        SRR12162153     482373  135769259       11292872\n    SRP253798       SRX8677884      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956970      hCoV-19/Australia/VIC1816/2020  NextSeq 550    357052   41111134        SRR12162154     357052  103693201       11292871\n    SRP253798       SRX8677883      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956969      hCoV-19/Australia/VIC1815/2020  NextSeq 550    307106   35306959        SRR12162155     307106  89866234        11292870\n    SRP253798       SRX8677882      Severe acute respiratory syndrome coronavirus 2 2697049 Severe acute respiratory syndrome coronavirus 2 AMPLICON        VIRAL RNA       PCR     SRS6956968      hCoV-19/Australia/VIC1814/2020  NextSeq 550    353704   40652239        SRR12162156     353704  103366580       11292869\n\nTo query European Nucleotide Archive (ENA) instead:\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb search --db ena -q coronavirus --publication-date 01-08-2020:07-08-2020 --max 10000\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.search import EnaSearch\n\ninstance = EnaSearch(return_max=10000, query=\"coronavirus\", publication_date=\"01-08-2020:07-08-2020\")\ninstance.search()\ninstance.get_df()\n```\n````\n`````\n\nOutput (showing only the first 10 entries): :\n\n    study_accession experiment_accession    experiment_title        description     tax_id  scientific_name library_strategylibrary_source  library_selection       sample_accession        sample_title    instrument_model        run_accession  read_count       base_count\n    PRJEB12126      ERX1264364      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    OTHER   TRANSCRIPTOMIC  other   SAMEA3708907    Sample 1        Illumina HiSeq 2000     ERR1190989      38883498        1161289538\n    PRJEB12126      ERX1264365      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    OTHER   TRANSCRIPTOMIC  other   SAMEA3708908    Sample 10       Illumina HiSeq 2000     ERR1190990      55544297        1779600908\n    PRJEB12126      ERX1264366      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    OTHER   TRANSCRIPTOMIC  other   SAMEA3708909    Sample 11       Illumina HiSeq 2000     ERR1190991      54474851        1713994365\n    PRJEB12126      ERX1264367      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    OTHER   TRANSCRIPTOMIC  other   SAMEA3708910    Sample 12       Illumina HiSeq 2000     ERR1190992      78497711        2489092061\n    PRJEB12126      ERX1264368      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708911    Sample 13       Illumina HiSeq 2000     ERR1190993      84955423        2627276298\n    PRJEB12126      ERX1264369      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708912    Sample 14       Illumina HiSeq 2000     ERR1190994      75097651        2293097872\n    PRJEB12126      ERX1264370      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708913    Sample 15       Illumina HiSeq 2000     ERR1190995      67177553        2060926619\n    PRJEB12126      ERX1264371      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708914    Sample 16       Illumina HiSeq 2000     ERR1190996      62940694        2061757111\n    PRJEB12126      ERX1264372      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708915    Sample 17       Illumina HiSeq 2000     ERR1190997      80591061        2475034240\n    PRJEB12126      ERX1264373      Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling    10090   Mus musculus    RNA-Seq TRANSCRIPTOMIC  RANDOM  SAMEA3708916    Sample 18       Illumina HiSeq 2000     ERR1190998      68575621        2149386138\n\nIf the number of returned entries is large, it might be troublesome to\nfilter through the metadata to find any information of interest. As a\nstarting point, we can use the search feature to generate summary\nstatistics and graphs for the search result:\n\n### Statistics\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb search --db ena --organism \"Severe acute respiratory syndrome coronavirus 2\" --max 10000 -s\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.search import EnaSearch\ninstance = EnaSearch(return_max=10000, organism=\"Severe acute respiratory syndrome coronavirus 2\")\ninstance.search()\ninstance.show_result_statistics()\n```\n````\n`````\n\nOutput:\n\n    Statistics for the search query:\n    =================================\n    Number of unique studies: 7\n    Number of unique experiments: 10000\n    Number of unique runs: 10000\n    Number of unique samples: 9797\n    Mean base count of samples: 238380171.626\n    Median base count of samples: 164470138.000\n    Sample base count standard deviation: 261654776.053\n    Date range:\n        2020-04:  1299\n        2020-05:  2518\n        2020-06:  6181\n        2020-07:  2\n\n    Organisms:\n        Severe acute respiratory syndrome coronavirus 2:  10000\n\n    Platform:\n        ILLUMINA:  5175\n        OXFORD_NANOPORE:  4825\n\n    Library strategy:\n        AMPLICON:  9789\n        RNA-Seq:  1\n        Targeted-Capture:  202\n        WGS:  8\n\n    Library source:\n        GENOMIC:  8\n        METATRANSCRIPTOMIC:  1\n        TRANSCRIPTOMIC:  1\n        VIRAL RNA:  9990\n\n    Library selection:\n        PCR:  9789\n        RANDOM:  9\n        other:  202\n\n    Library layout:\n        PAIRED:  5059\n        SINGLE:  4941\n\n### Plotting\n\n`````{tabs}\n````{tab} Console\n``` bash\n$ pysradb search --db ena -q e --max 500000 -g\n```\n````\n\n````{tab} Python\n``` python\nfrom pysradb.search import EnaSearch\n\ninstance = EnaSearch(return_max=500000, \"e\")\ninstance.search()\ninstance.visualise_results()\n```\n````\n`````\n\nOutput: Graphs generated will automatically be saved under\n[./search_plots/]{.title-ref}. Optionally, graphs can be shown in python\nby including the argument [show=True]{.title-ref} Here are some of the\navailable graphs that will be generated:\n\n![image](_static/e1.png){width=\"600px\"}\n\n![image](_static/e2.png){width=\"600px\"}\n\n![image](_static/e3.png){width=\"600px\"}\n\n------------------------------------------------------------------------\n\n## List of possible [pysradb]{.title-ref} operations\n\n    $ pysradb\n    usage: pysradb [-h] [--version] [--citation]\n                   {metadb,metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs}\n                   ...\n\n    pysradb: Query NGS metadata and data from NCBI Sequence Read Archive.\n    Citation: 10.12688/f1000research.18676.1\n\n    optional arguments:\n      -h, --help            show this help message and exit\n      --version             show program's version number and exit\n      --citation            how to cite\n\n    subcommands:\n      {metadb,metadata,download,search,gse-to-gsm,gse-to-srp,gsm-to-gse,gsm-to-srp,gsm-to-srr,gsm-to-srs,gsm-to-srx,srp-to-gse,srp-to-srr,srp-to-srs,srp-to-srx,srr-to-gsm,srr-to-srp,srr-to-srs,srr-to-srx,srs-to-gsm,srs-to-srx,srx-to-srp,srx-to-srr,srx-to-srs}\n        metadata            Fetch metadata for SRA project (SRPnnnn)\n        download            Download SRA project (SRPnnnn)\n        search              Search SRA/ENA for matching text\n        gse-to-gsm          Get GSM for a GSE\n        gse-to-srp          Get SRP for a GSE\n        gsm-to-gse          Get GSE for a GSM\n        gsm-to-srp          Get SRP for a GSM\n        gsm-to-srr          Get SRR for a GSM\n        gsm-to-srs          Get SRS for a GSM\n        gsm-to-srx          Get SRX for a GSM\n        srp-to-gse          Get GSE for a SRP\n        srp-to-srr          Get SRR for a SRP\n        srp-to-srs          Get SRS for a SRP\n        srp-to-srx          Get SRX for a SRP\n        srr-to-gsm          Get GSM for a SRR\n        srr-to-srp          Get SRP for a SRR\n        srr-to-srs          Get SRS for a SRR\n        srr-to-srx          Get SRX for a SRR\n        srs-to-gsm          Get GSM for a SRS\n        srs-to-srx          Get SRX for a SRS\n        srx-to-srp          Get SRP for a SRX\n        srx-to-srr          Get SRR for a SRX\n        srx-to-srs          Get SRS for a SRX\n\n"
  },
  {
    "path": "notebooks/01.Python-API_demo.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/01.Python-API_demo.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Python API Demo\\n\",\n    \"\\n\",\n    \"This notebook demonstrates the core functionality of pysradb Python API for querying SRA metadata.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:15.972370Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:15.972015Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:16.357927Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:16.356676Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"pysradb 3.0.0.dev0 is already installed\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/data/github/pysradb/pysradb/utils.py:16: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:16.423567Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:16.423041Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:16.426702Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:16.425713Z\"\n    },\n    \"id\": \"D-CWF0xjKhxJ\",\n    \"outputId\": \"b639c586-2a2b-4ecd-ae4a-55643c276cda\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"# pip install git+https://github.com/saketkc/pysradb\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:16.428767Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:16.428621Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:17.350867Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:17.349172Z\"\n    },\n    \"id\": \"Tyd8Sjv3KpMa\",\n    \"outputId\": \"9480b87f-a3bd-4507-fac4-c03ee2ad1c8f\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"pysradb 3.0.0.dev0\\r\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb --version\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:17.354299Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:17.353950Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:17.358832Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:17.357663Z\"\n    },\n    \"id\": \"3h9Wlv3lKb7b\",\n    \"outputId\": \"d3cf89f7-f059-41bd-9767-2bb2a0679dbf\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"from pysradb.sraweb import SRAweb\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:17.361533Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:17.361250Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:17.365279Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:17.364056Z\"\n    },\n    \"id\": \"0iOHm8wUKb8G\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"db = SRAweb()\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"CDyWgOqzdn6d\"\n   },\n   \"source\": [\n    \"## Get metadata of one project\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 6,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 3152\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:17.368102Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:17.367803Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:19.140051Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:19.139033Z\"\n    },\n    \"id\": \"pXJ6WhsjKb_x\",\n    \"outputId\": \"dfcb2624-7e85-487c-9550-0d7b7887ed68\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>library_source</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>biosample</th>\\n\",\n       \"      <th>bioproject</th>\\n\",\n       \"      <th>instrument</th>\\n\",\n       \"      <th>instrument_model</th>\\n\",\n       \"      <th>instrument_model_desc</th>\\n\",\n       \"      <th>total_spots</th>\\n\",\n       \"      <th>total_size</th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>run_total_spots</th>\\n\",\n       \"      <th>run_total_bases</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>133</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196264</td>\\n\",\n       \"      <td>GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766814</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>87264604</td>\\n\",\n       \"      <td>5927043102</td>\\n\",\n       \"      <td>SRR594393</td>\\n\",\n       \"      <td>87264604</td>\\n\",\n       \"      <td>8726460400</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>132</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196265</td>\\n\",\n       \"      <td>GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766815</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>101816491</td>\\n\",\n       \"      <td>6835402318</td>\\n\",\n       \"      <td>SRR594394</td>\\n\",\n       \"      <td>101816491</td>\\n\",\n       \"      <td>10181649100</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>131</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196266</td>\\n\",\n       \"      <td>GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766816</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina Genome Analyzer IIx</td>\\n\",\n       \"      <td>Illumina Genome Analyzer IIx</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>35175982</td>\\n\",\n       \"      <td>1502674440</td>\\n\",\n       \"      <td>SRR594395</td>\\n\",\n       \"      <td>35175982</td>\\n\",\n       \"      <td>2532670704</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>130</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196267</td>\\n\",\n       \"      <td>GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766817</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>119274786</td>\\n\",\n       \"      <td>7555854784</td>\\n\",\n       \"      <td>SRR594396</td>\\n\",\n       \"      <td>119274786</td>\\n\",\n       \"      <td>11927478600</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>129</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196268</td>\\n\",\n       \"      <td>GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766818</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>116292478</td>\\n\",\n       \"      <td>7481554926</td>\\n\",\n       \"      <td>SRR594397</td>\\n\",\n       \"      <td>116292478</td>\\n\",\n       \"      <td>11629247800</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196393</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766943</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>18978066</td>\\n\",\n       \"      <td>562367072</td>\\n\",\n       \"      <td>SRR594522</td>\\n\",\n       \"      <td>18978066</td>\\n\",\n       \"      <td>1366420752</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196394</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766944</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>26604280</td>\\n\",\n       \"      <td>931417024</td>\\n\",\n       \"      <td>SRR594523</td>\\n\",\n       \"      <td>26604280</td>\\n\",\n       \"      <td>1862299600</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196395</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766945</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>25606436</td>\\n\",\n       \"      <td>986287075</td>\\n\",\n       \"      <td>SRR594524</td>\\n\",\n       \"      <td>25606436</td>\\n\",\n       \"      <td>1792450520</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196396</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766946</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>24401708</td>\\n\",\n       \"      <td>1201671888</td>\\n\",\n       \"      <td>SRR594525</td>\\n\",\n       \"      <td>24401708</td>\\n\",\n       \"      <td>1756922976</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196397</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766947</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>37423394</td>\\n\",\n       \"      <td>1980545796</td>\\n\",\n       \"      <td>SRR594526</td>\\n\",\n       \"      <td>37423394</td>\\n\",\n       \"      <td>2993871520</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>134 rows × 24 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"    study_accession                                        study_title  \\\\\\n\",\n       \"133       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"132       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"131       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"130       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"129       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"..              ...                                                ...   \\n\",\n       \"4         SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"3         SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"2         SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"1         SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"0         SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"\\n\",\n       \"    experiment_accession                                   experiment_title  \\\\\\n\",\n       \"133            SRX196264   GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq   \\n\",\n       \"132            SRX196265   GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq   \\n\",\n       \"131            SRX196266   GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq   \\n\",\n       \"130            SRX196267  GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq   \\n\",\n       \"129            SRX196268   GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq   \\n\",\n       \"..                   ...                                                ...   \\n\",\n       \"4              SRX196393  GSM1020769: chicken_c_liver; Gallus gallus; RN...   \\n\",\n       \"3              SRX196394  GSM1020770: chicken_c_lung; Gallus gallus; RNA...   \\n\",\n       \"2              SRX196395  GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq   \\n\",\n       \"1              SRX196396  GSM1020772: chicken_c_spleen; Gallus gallus; R...   \\n\",\n       \"0              SRX196397  GSM1020773: chicken_c_testes; Gallus gallus; R...   \\n\",\n       \"\\n\",\n       \"                                       experiment_desc organism_taxid  \\\\\\n\",\n       \"133   GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq          10090   \\n\",\n       \"132   GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq          10090   \\n\",\n       \"131   GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq          10090   \\n\",\n       \"130  GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq          10090   \\n\",\n       \"129   GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq          10090   \\n\",\n       \"..                                                 ...            ...   \\n\",\n       \"4    GSM1020769: chicken_c_liver; Gallus gallus; RN...           9031   \\n\",\n       \"3    GSM1020770: chicken_c_lung; Gallus gallus; RNA...           9031   \\n\",\n       \"2    GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq           9031   \\n\",\n       \"1    GSM1020772: chicken_c_spleen; Gallus gallus; R...           9031   \\n\",\n       \"0    GSM1020773: chicken_c_testes; Gallus gallus; R...           9031   \\n\",\n       \"\\n\",\n       \"     organism_name library_name library_strategy  library_source  ...  \\\\\\n\",\n       \"133   Mus musculus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"132   Mus musculus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"131   Mus musculus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"130   Mus musculus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"129   Mus musculus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"..             ...          ...              ...             ...  ...   \\n\",\n       \"4    Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"3    Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"2    Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"1    Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"0    Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"\\n\",\n       \"        biosample   bioproject                    instrument  \\\\\\n\",\n       \"133  SAMN01766814  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"132  SAMN01766815  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"131  SAMN01766816  PRJNA177791  Illumina Genome Analyzer IIx   \\n\",\n       \"130  SAMN01766817  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"129  SAMN01766818  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"..            ...          ...                           ...   \\n\",\n       \"4    SAMN01766943  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"3    SAMN01766944  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"2    SAMN01766945  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"1    SAMN01766946  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"0    SAMN01766947  PRJNA177791           Illumina HiSeq 2000   \\n\",\n       \"\\n\",\n       \"                 instrument_model instrument_model_desc total_spots  \\\\\\n\",\n       \"133           Illumina HiSeq 2000              ILLUMINA    87264604   \\n\",\n       \"132           Illumina HiSeq 2000              ILLUMINA   101816491   \\n\",\n       \"131  Illumina Genome Analyzer IIx              ILLUMINA    35175982   \\n\",\n       \"130           Illumina HiSeq 2000              ILLUMINA   119274786   \\n\",\n       \"129           Illumina HiSeq 2000              ILLUMINA   116292478   \\n\",\n       \"..                            ...                   ...         ...   \\n\",\n       \"4             Illumina HiSeq 2000              ILLUMINA    18978066   \\n\",\n       \"3             Illumina HiSeq 2000              ILLUMINA    26604280   \\n\",\n       \"2             Illumina HiSeq 2000              ILLUMINA    25606436   \\n\",\n       \"1             Illumina HiSeq 2000              ILLUMINA    24401708   \\n\",\n       \"0             Illumina HiSeq 2000              ILLUMINA    37423394   \\n\",\n       \"\\n\",\n       \"     total_size run_accession run_total_spots run_total_bases  \\n\",\n       \"133  5927043102     SRR594393        87264604      8726460400  \\n\",\n       \"132  6835402318     SRR594394       101816491     10181649100  \\n\",\n       \"131  1502674440     SRR594395        35175982      2532670704  \\n\",\n       \"130  7555854784     SRR594396       119274786     11927478600  \\n\",\n       \"129  7481554926     SRR594397       116292478     11629247800  \\n\",\n       \"..          ...           ...             ...             ...  \\n\",\n       \"4     562367072     SRR594522        18978066      1366420752  \\n\",\n       \"3     931417024     SRR594523        26604280      1862299600  \\n\",\n       \"2     986287075     SRR594524        25606436      1792450520  \\n\",\n       \"1    1201671888     SRR594525        24401708      1756922976  \\n\",\n       \"0    1980545796     SRR594526        37423394      2993871520  \\n\",\n       \"\\n\",\n       \"[134 rows x 24 columns]\"\n      ]\n     },\n     \"execution_count\": 6,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.sra_metadata(\\\"SRP016501\\\")\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"gl-3e2L9Kb_7\"\n   },\n   \"source\": [\n    \"## Get detailed metadata\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:19.143434Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:19.143150Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:26.352948Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:26.351467Z\"\n    },\n    \"id\": \"JBUcbaxlKb_9\",\n    \"outputId\": \"57afe1b5-cb98-4cdd-b452-69527cbd695d\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>experiment_alias</th>\\n\",\n       \"      <th>source_name</th>\\n\",\n       \"      <th>tissue</th>\\n\",\n       \"      <th>strain</th>\\n\",\n       \"      <th>ena_fastq_http</th>\\n\",\n       \"      <th>ena_fastq_http_1</th>\\n\",\n       \"      <th>ena_fastq_http_2</th>\\n\",\n       \"      <th>ena_fastq_ftp</th>\\n\",\n       \"      <th>ena_fastq_ftp_1</th>\\n\",\n       \"      <th>ena_fastq_ftp_2</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRR594393</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196264</td>\\n\",\n       \"      <td>GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020640_1</td>\\n\",\n       \"      <td>mouse_brain</td>\\n\",\n       \"      <td>brain</td>\\n\",\n       \"      <td>DBA/2J</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRR594394</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196265</td>\\n\",\n       \"      <td>GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020641_1</td>\\n\",\n       \"      <td>mouse_colon</td>\\n\",\n       \"      <td>colon</td>\\n\",\n       \"      <td>DBA/2J</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRR594395</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196266</td>\\n\",\n       \"      <td>GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020642_1</td>\\n\",\n       \"      <td>mouse_heart</td>\\n\",\n       \"      <td>heart</td>\\n\",\n       \"      <td>DBA/2J</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRR594396</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196267</td>\\n\",\n       \"      <td>GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020643_1</td>\\n\",\n       \"      <td>mouse_kidney</td>\\n\",\n       \"      <td>kidney</td>\\n\",\n       \"      <td>DBA/2J</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRR594397</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196268</td>\\n\",\n       \"      <td>GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020644_1</td>\\n\",\n       \"      <td>mouse_liver</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>DBA/2J</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>129</th>\\n\",\n       \"      <td>SRR594522</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196393</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020769_1</td>\\n\",\n       \"      <td>chicken_liver</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>130</th>\\n\",\n       \"      <td>SRR594523</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196394</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020770_1</td>\\n\",\n       \"      <td>chicken_lung</td>\\n\",\n       \"      <td>lung</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>131</th>\\n\",\n       \"      <td>SRR594524</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196395</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020771_1</td>\\n\",\n       \"      <td>chicken_skm</td>\\n\",\n       \"      <td>skeletal muscle</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>132</th>\\n\",\n       \"      <td>SRR594525</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196396</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020772_1</td>\\n\",\n       \"      <td>chicken_spleen</td>\\n\",\n       \"      <td>spleen</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>133</th>\\n\",\n       \"      <td>SRR594526</td>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196397</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>GSM1020773_1</td>\\n\",\n       \"      <td>chicken_testes</td>\\n\",\n       \"      <td>testes</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>134 rows × 53 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"    run_accession study_accession  \\\\\\n\",\n       \"0       SRR594393       SRP016501   \\n\",\n       \"1       SRR594394       SRP016501   \\n\",\n       \"2       SRR594395       SRP016501   \\n\",\n       \"3       SRR594396       SRP016501   \\n\",\n       \"4       SRR594397       SRP016501   \\n\",\n       \"..            ...             ...   \\n\",\n       \"129     SRR594522       SRP016501   \\n\",\n       \"130     SRR594523       SRP016501   \\n\",\n       \"131     SRR594524       SRP016501   \\n\",\n       \"132     SRR594525       SRP016501   \\n\",\n       \"133     SRR594526       SRP016501   \\n\",\n       \"\\n\",\n       \"                                           study_title experiment_accession  \\\\\\n\",\n       \"0    Evolutionary dynamics of gene and isoform regu...            SRX196264   \\n\",\n       \"1    Evolutionary dynamics of gene and isoform regu...            SRX196265   \\n\",\n       \"2    Evolutionary dynamics of gene and isoform regu...            SRX196266   \\n\",\n       \"3    Evolutionary dynamics of gene and isoform regu...            SRX196267   \\n\",\n       \"4    Evolutionary dynamics of gene and isoform regu...            SRX196268   \\n\",\n       \"..                                                 ...                  ...   \\n\",\n       \"129  Evolutionary dynamics of gene and isoform regu...            SRX196393   \\n\",\n       \"130  Evolutionary dynamics of gene and isoform regu...            SRX196394   \\n\",\n       \"131  Evolutionary dynamics of gene and isoform regu...            SRX196395   \\n\",\n       \"132  Evolutionary dynamics of gene and isoform regu...            SRX196396   \\n\",\n       \"133  Evolutionary dynamics of gene and isoform regu...            SRX196397   \\n\",\n       \"\\n\",\n       \"                                      experiment_title  \\\\\\n\",\n       \"0     GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq   \\n\",\n       \"1     GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq   \\n\",\n       \"2     GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq   \\n\",\n       \"3    GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq   \\n\",\n       \"4     GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq   \\n\",\n       \"..                                                 ...   \\n\",\n       \"129  GSM1020769: chicken_c_liver; Gallus gallus; RN...   \\n\",\n       \"130  GSM1020770: chicken_c_lung; Gallus gallus; RNA...   \\n\",\n       \"131  GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq   \\n\",\n       \"132  GSM1020772: chicken_c_spleen; Gallus gallus; R...   \\n\",\n       \"133  GSM1020773: chicken_c_testes; Gallus gallus; R...   \\n\",\n       \"\\n\",\n       \"                                       experiment_desc organism_taxid  \\\\\\n\",\n       \"0     GSM1020640: mouse_a_brain; Mus musculus; RNA-Seq          10090   \\n\",\n       \"1     GSM1020641: mouse_a_colon; Mus musculus; RNA-Seq          10090   \\n\",\n       \"2     GSM1020642: mouse_a_heart; Mus musculus; RNA-Seq          10090   \\n\",\n       \"3    GSM1020643: mouse_a_kidney; Mus musculus; RNA-Seq          10090   \\n\",\n       \"4     GSM1020644: mouse_a_liver; Mus musculus; RNA-Seq          10090   \\n\",\n       \"..                                                 ...            ...   \\n\",\n       \"129  GSM1020769: chicken_c_liver; Gallus gallus; RN...           9031   \\n\",\n       \"130  GSM1020770: chicken_c_lung; Gallus gallus; RNA...           9031   \\n\",\n       \"131  GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq           9031   \\n\",\n       \"132  GSM1020772: chicken_c_spleen; Gallus gallus; R...           9031   \\n\",\n       \"133  GSM1020773: chicken_c_testes; Gallus gallus; R...           9031   \\n\",\n       \"\\n\",\n       \"     organism_name library_name library_strategy  ... experiment_alias  \\\\\\n\",\n       \"0     Mus musculus         <NA>          RNA-Seq  ...     GSM1020640_1   \\n\",\n       \"1     Mus musculus         <NA>          RNA-Seq  ...     GSM1020641_1   \\n\",\n       \"2     Mus musculus         <NA>          RNA-Seq  ...     GSM1020642_1   \\n\",\n       \"3     Mus musculus         <NA>          RNA-Seq  ...     GSM1020643_1   \\n\",\n       \"4     Mus musculus         <NA>          RNA-Seq  ...     GSM1020644_1   \\n\",\n       \"..             ...          ...              ...  ...              ...   \\n\",\n       \"129  Gallus gallus         <NA>          RNA-Seq  ...     GSM1020769_1   \\n\",\n       \"130  Gallus gallus         <NA>          RNA-Seq  ...     GSM1020770_1   \\n\",\n       \"131  Gallus gallus         <NA>          RNA-Seq  ...     GSM1020771_1   \\n\",\n       \"132  Gallus gallus         <NA>          RNA-Seq  ...     GSM1020772_1   \\n\",\n       \"133  Gallus gallus         <NA>          RNA-Seq  ...     GSM1020773_1   \\n\",\n       \"\\n\",\n       \"        source_name           tissue  strain ena_fastq_http  \\\\\\n\",\n       \"0       mouse_brain            brain  DBA/2J           <NA>   \\n\",\n       \"1       mouse_colon            colon  DBA/2J           <NA>   \\n\",\n       \"2       mouse_heart            heart  DBA/2J           <NA>   \\n\",\n       \"3      mouse_kidney           kidney  DBA/2J           <NA>   \\n\",\n       \"4       mouse_liver            liver  DBA/2J           <NA>   \\n\",\n       \"..              ...              ...     ...            ...   \\n\",\n       \"129   chicken_liver            liver    <NA>           <NA>   \\n\",\n       \"130    chicken_lung             lung    <NA>           <NA>   \\n\",\n       \"131     chicken_skm  skeletal muscle    <NA>           <NA>   \\n\",\n       \"132  chicken_spleen           spleen    <NA>           <NA>   \\n\",\n       \"133  chicken_testes           testes    <NA>           <NA>   \\n\",\n       \"\\n\",\n       \"                                      ena_fastq_http_1  \\\\\\n\",\n       \"0    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"1    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"2    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"3    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"4    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"..                                                 ...   \\n\",\n       \"129  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"130  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"131  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"132  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"133  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...   \\n\",\n       \"\\n\",\n       \"                                      ena_fastq_http_2 ena_fastq_ftp  \\\\\\n\",\n       \"0    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"1    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"2    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"3    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"4    http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"..                                                 ...           ...   \\n\",\n       \"129  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"130  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"131  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"132  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"133  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR594/SRR...          <NA>   \\n\",\n       \"\\n\",\n       \"                                       ena_fastq_ftp_1  \\\\\\n\",\n       \"0    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"1    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"2    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"3    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"4    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"..                                                 ...   \\n\",\n       \"129  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"130  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"131  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"132  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"133  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...   \\n\",\n       \"\\n\",\n       \"                                       ena_fastq_ftp_2  \\n\",\n       \"0    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"1    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"2    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"3    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"4    era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"..                                                 ...  \\n\",\n       \"129  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"130  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"131  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"132  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"133  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR594/...  \\n\",\n       \"\\n\",\n       \"[134 rows x 53 columns]\"\n      ]\n     },\n     \"execution_count\": 7,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.sra_metadata(\\\"SRP016501\\\", detailed=True)\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"unVsYJARdsfL\"\n   },\n   \"source\": [\n    \"## Get metadata of multiple projects\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:26.356567Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:26.356317Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:28.115240Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:28.113903Z\"\n    },\n    \"id\": \"YzbKfVVOdvIE\",\n    \"outputId\": \"8333cc13-a3af-446d-ffad-54caab6fa46a\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>library_source</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>biosample</th>\\n\",\n       \"      <th>bioproject</th>\\n\",\n       \"      <th>instrument</th>\\n\",\n       \"      <th>instrument_model</th>\\n\",\n       \"      <th>instrument_model_desc</th>\\n\",\n       \"      <th>total_spots</th>\\n\",\n       \"      <th>total_size</th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>run_total_spots</th>\\n\",\n       \"      <th>run_total_bases</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>25</th>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536403</td>\\n\",\n       \"      <td>GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN06293487</td>\\n\",\n       \"      <td>PRJNA369742</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>42082855</td>\\n\",\n       \"      <td>916745706</td>\\n\",\n       \"      <td>SRR5227288</td>\\n\",\n       \"      <td>42082855</td>\\n\",\n       \"      <td>2104142750</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>24</th>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536404</td>\\n\",\n       \"      <td>GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN06293486</td>\\n\",\n       \"      <td>PRJNA369742</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>41657461</td>\\n\",\n       \"      <td>1360366732</td>\\n\",\n       \"      <td>SRR5227289</td>\\n\",\n       \"      <td>41657461</td>\\n\",\n       \"      <td>2082873050</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>23</th>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536405</td>\\n\",\n       \"      <td>GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN06293485</td>\\n\",\n       \"      <td>PRJNA369742</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>40462973</td>\\n\",\n       \"      <td>1287284933</td>\\n\",\n       \"      <td>SRR5227290</td>\\n\",\n       \"      <td>40462973</td>\\n\",\n       \"      <td>2023148650</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>22</th>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536406</td>\\n\",\n       \"      <td>GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN06293484</td>\\n\",\n       \"      <td>PRJNA369742</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>41143319</td>\\n\",\n       \"      <td>843881081</td>\\n\",\n       \"      <td>SRR5227291</td>\\n\",\n       \"      <td>41143319</td>\\n\",\n       \"      <td>2057165950</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>21</th>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536407</td>\\n\",\n       \"      <td>GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN06293483</td>\\n\",\n       \"      <td>PRJNA369742</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>60552437</td>\\n\",\n       \"      <td>1875910244</td>\\n\",\n       \"      <td>SRR5227292</td>\\n\",\n       \"      <td>60552437</td>\\n\",\n       \"      <td>3027621850</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>30</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196393</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>GSM1020769: chicken_c_liver; Gallus gallus; RN...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766943</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>18978066</td>\\n\",\n       \"      <td>562367072</td>\\n\",\n       \"      <td>SRR594522</td>\\n\",\n       \"      <td>18978066</td>\\n\",\n       \"      <td>1366420752</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>29</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196394</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>GSM1020770: chicken_c_lung; Gallus gallus; RNA...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766944</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>26604280</td>\\n\",\n       \"      <td>931417024</td>\\n\",\n       \"      <td>SRR594523</td>\\n\",\n       \"      <td>26604280</td>\\n\",\n       \"      <td>1862299600</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>28</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196395</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766945</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>25606436</td>\\n\",\n       \"      <td>986287075</td>\\n\",\n       \"      <td>SRR594524</td>\\n\",\n       \"      <td>25606436</td>\\n\",\n       \"      <td>1792450520</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>27</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196396</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020772: chicken_c_spleen; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766946</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>24401708</td>\\n\",\n       \"      <td>1201671888</td>\\n\",\n       \"      <td>SRR594525</td>\\n\",\n       \"      <td>24401708</td>\\n\",\n       \"      <td>1756922976</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>26</th>\\n\",\n       \"      <td>SRP016501</td>\\n\",\n       \"      <td>Evolutionary dynamics of gene and isoform regu...</td>\\n\",\n       \"      <td>SRX196397</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>GSM1020773: chicken_c_testes; Gallus gallus; R...</td>\\n\",\n       \"      <td>9031</td>\\n\",\n       \"      <td>Gallus gallus</td>\\n\",\n       \"      <td></td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>SAMN01766947</td>\\n\",\n       \"      <td>PRJNA177791</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>Illumina HiSeq 2000</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>37423394</td>\\n\",\n       \"      <td>1980545796</td>\\n\",\n       \"      <td>SRR594526</td>\\n\",\n       \"      <td>37423394</td>\\n\",\n       \"      <td>2993871520</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>160 rows × 24 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   study_accession                                        study_title  \\\\\\n\",\n       \"25       SRP098789  Selective stalling of human translation throug...   \\n\",\n       \"24       SRP098789  Selective stalling of human translation throug...   \\n\",\n       \"23       SRP098789  Selective stalling of human translation throug...   \\n\",\n       \"22       SRP098789  Selective stalling of human translation throug...   \\n\",\n       \"21       SRP098789  Selective stalling of human translation throug...   \\n\",\n       \"..             ...                                                ...   \\n\",\n       \"30       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"29       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"28       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"27       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"26       SRP016501  Evolutionary dynamics of gene and isoform regu...   \\n\",\n       \"\\n\",\n       \"   experiment_accession                                   experiment_title  \\\\\\n\",\n       \"25           SRX2536403  GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...   \\n\",\n       \"24           SRX2536404  GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...   \\n\",\n       \"23           SRX2536405  GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...   \\n\",\n       \"22           SRX2536406  GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...   \\n\",\n       \"21           SRX2536407  GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...   \\n\",\n       \"..                  ...                                                ...   \\n\",\n       \"30            SRX196393  GSM1020769: chicken_c_liver; Gallus gallus; RN...   \\n\",\n       \"29            SRX196394  GSM1020770: chicken_c_lung; Gallus gallus; RNA...   \\n\",\n       \"28            SRX196395  GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq   \\n\",\n       \"27            SRX196396  GSM1020772: chicken_c_spleen; Gallus gallus; R...   \\n\",\n       \"26            SRX196397  GSM1020773: chicken_c_testes; Gallus gallus; R...   \\n\",\n       \"\\n\",\n       \"                                      experiment_desc organism_taxid  \\\\\\n\",\n       \"25  GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...           9606   \\n\",\n       \"24  GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...           9606   \\n\",\n       \"23  GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...           9606   \\n\",\n       \"22  GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...           9606   \\n\",\n       \"21  GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...           9606   \\n\",\n       \"..                                                ...            ...   \\n\",\n       \"30  GSM1020769: chicken_c_liver; Gallus gallus; RN...           9031   \\n\",\n       \"29  GSM1020770: chicken_c_lung; Gallus gallus; RNA...           9031   \\n\",\n       \"28  GSM1020771: chicken_c_skm; Gallus gallus; RNA-Seq           9031   \\n\",\n       \"27  GSM1020772: chicken_c_spleen; Gallus gallus; R...           9031   \\n\",\n       \"26  GSM1020773: chicken_c_testes; Gallus gallus; R...           9031   \\n\",\n       \"\\n\",\n       \"    organism_name library_name library_strategy  library_source  ...  \\\\\\n\",\n       \"25   Homo sapiens                         OTHER  TRANSCRIPTOMIC  ...   \\n\",\n       \"24   Homo sapiens                         OTHER  TRANSCRIPTOMIC  ...   \\n\",\n       \"23   Homo sapiens                         OTHER  TRANSCRIPTOMIC  ...   \\n\",\n       \"22   Homo sapiens                         OTHER  TRANSCRIPTOMIC  ...   \\n\",\n       \"21   Homo sapiens                         OTHER  TRANSCRIPTOMIC  ...   \\n\",\n       \"..            ...          ...              ...             ...  ...   \\n\",\n       \"30  Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"29  Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"28  Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"27  Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"26  Gallus gallus                       RNA-Seq  TRANSCRIPTOMIC  ...   \\n\",\n       \"\\n\",\n       \"       biosample   bioproject           instrument     instrument_model  \\\\\\n\",\n       \"25  SAMN06293487  PRJNA369742  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"24  SAMN06293486  PRJNA369742  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"23  SAMN06293485  PRJNA369742  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"22  SAMN06293484  PRJNA369742  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"21  SAMN06293483  PRJNA369742  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"..           ...          ...                  ...                  ...   \\n\",\n       \"30  SAMN01766943  PRJNA177791  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"29  SAMN01766944  PRJNA177791  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"28  SAMN01766945  PRJNA177791  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"27  SAMN01766946  PRJNA177791  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"26  SAMN01766947  PRJNA177791  Illumina HiSeq 2000  Illumina HiSeq 2000   \\n\",\n       \"\\n\",\n       \"   instrument_model_desc total_spots  total_size run_accession  \\\\\\n\",\n       \"25              ILLUMINA    42082855   916745706    SRR5227288   \\n\",\n       \"24              ILLUMINA    41657461  1360366732    SRR5227289   \\n\",\n       \"23              ILLUMINA    40462973  1287284933    SRR5227290   \\n\",\n       \"22              ILLUMINA    41143319   843881081    SRR5227291   \\n\",\n       \"21              ILLUMINA    60552437  1875910244    SRR5227292   \\n\",\n       \"..                   ...         ...         ...           ...   \\n\",\n       \"30              ILLUMINA    18978066   562367072     SRR594522   \\n\",\n       \"29              ILLUMINA    26604280   931417024     SRR594523   \\n\",\n       \"28              ILLUMINA    25606436   986287075     SRR594524   \\n\",\n       \"27              ILLUMINA    24401708  1201671888     SRR594525   \\n\",\n       \"26              ILLUMINA    37423394  1980545796     SRR594526   \\n\",\n       \"\\n\",\n       \"   run_total_spots run_total_bases  \\n\",\n       \"25        42082855      2104142750  \\n\",\n       \"24        41657461      2082873050  \\n\",\n       \"23        40462973      2023148650  \\n\",\n       \"22        41143319      2057165950  \\n\",\n       \"21        60552437      3027621850  \\n\",\n       \"..             ...             ...  \\n\",\n       \"30        18978066      1366420752  \\n\",\n       \"29        26604280      1862299600  \\n\",\n       \"28        25606436      1792450520  \\n\",\n       \"27        24401708      1756922976  \\n\",\n       \"26        37423394      2993871520  \\n\",\n       \"\\n\",\n       \"[160 rows x 24 columns]\"\n      ]\n     },\n     \"execution_count\": 8,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.sra_metadata([\\\"SRP016501\\\", \\\"SRP098789\\\"])\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"UuKRorTWZoQQ\"\n   },\n   \"source\": [\n    \"## Get metadata of a Run\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 9,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 214\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:28.118706Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:28.118442Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:32.510732Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:32.509474Z\"\n    },\n    \"id\": \"V1bMg1W6ZqZL\",\n    \"outputId\": \"9e6029ab-b0bf-4954-ada4-da4dc5ccb058\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>host_disease</th>\\n\",\n       \"      <th>isolation_source</th>\\n\",\n       \"      <th>lat_lon</th>\\n\",\n       \"      <th>biosamplemodel</th>\\n\",\n       \"      <th>ena_fastq_http</th>\\n\",\n       \"      <th>ena_fastq_http_1</th>\\n\",\n       \"      <th>ena_fastq_http_2</th>\\n\",\n       \"      <th>ena_fastq_ftp</th>\\n\",\n       \"      <th>ena_fastq_ftp_1</th>\\n\",\n       \"      <th>ena_fastq_ftp_2</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRR11085797</td>\\n\",\n       \"      <td>SRP249482</td>\\n\",\n       \"      <td>Bat coronavirus RaTG13 Genome sequencing</td>\\n\",\n       \"      <td>SRX7724752</td>\\n\",\n       \"      <td>RNA-Seq of Rhinolophus affinis:Fecal swab</td>\\n\",\n       \"      <td>RNA-Seq of Rhinolophus affinis:Fecal swab</td>\\n\",\n       \"      <td>694135</td>\\n\",\n       \"      <td>unidentified coronavirus</td>\\n\",\n       \"      <td>RaTG13</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>not applicable</td>\\n\",\n       \"      <td>fecal swab</td>\\n\",\n       \"      <td>not collected</td>\\n\",\n       \"      <td>Pathogen.cl</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR110/097...</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR110/097...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR110/...</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR110/...</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>1 rows × 60 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"  run_accession study_accession                               study_title  \\\\\\n\",\n       \"0   SRR11085797       SRP249482  Bat coronavirus RaTG13 Genome sequencing   \\n\",\n       \"\\n\",\n       \"  experiment_accession                           experiment_title  \\\\\\n\",\n       \"0           SRX7724752  RNA-Seq of Rhinolophus affinis:Fecal swab   \\n\",\n       \"\\n\",\n       \"                             experiment_desc organism_taxid  \\\\\\n\",\n       \"0  RNA-Seq of Rhinolophus affinis:Fecal swab         694135   \\n\",\n       \"\\n\",\n       \"              organism_name library_name library_strategy  ...  \\\\\\n\",\n       \"0  unidentified coronavirus       RaTG13          RNA-Seq  ...   \\n\",\n       \"\\n\",\n       \"     host_disease isolation_source        lat_lon biosamplemodel  \\\\\\n\",\n       \"0  not applicable       fecal swab  not collected    Pathogen.cl   \\n\",\n       \"\\n\",\n       \"  ena_fastq_http                                   ena_fastq_http_1  \\\\\\n\",\n       \"0           <NA>  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR110/097...   \\n\",\n       \"\\n\",\n       \"                                    ena_fastq_http_2 ena_fastq_ftp  \\\\\\n\",\n       \"0  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR110/097...          <NA>   \\n\",\n       \"\\n\",\n       \"                                     ena_fastq_ftp_1  \\\\\\n\",\n       \"0  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR110/...   \\n\",\n       \"\\n\",\n       \"                                     ena_fastq_ftp_2  \\n\",\n       \"0  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR110/...  \\n\",\n       \"\\n\",\n       \"[1 rows x 60 columns]\"\n      ]\n     },\n     \"execution_count\": 9,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.sra_metadata(\\\"SRR11085797\\\", detailed=True)\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"cADqnvl0KcAn\"\n   },\n   \"source\": [\n    \"## SRX to GSM\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 10,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 80\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-11-01T13:07:32.514680Z\",\n     \"iopub.status.busy\": \"2025-11-01T13:07:32.514374Z\",\n     \"iopub.status.idle\": \"2025-11-01T13:07:33.931846Z\",\n     \"shell.execute_reply\": \"2025-11-01T13:07:33.930414Z\"\n    },\n    \"id\": \"iCFhnY0FKcAp\",\n    \"outputId\": \"7efff242-ca68-499a-ee9e-0ec1f1dff95a\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_alias</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRX1254413</td>\\n\",\n       \"      <td>GSM1887643</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"  experiment_accession experiment_alias\\n\",\n       \"0           SRX1254413       GSM1887643\"\n      ]\n     },\n     \"execution_count\": 10,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.srx_to_gsm(\\\"SRX1254413\\\")\\n\",\n    \"df\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"colab\": {\n   \"collapsed_sections\": [],\n   \"include_colab_link\": true,\n   \"name\": \"01.Python-API_demo.ipynb\",\n   \"provenance\": []\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.13.9\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}\n"
  },
  {
    "path": "notebooks/02.Commandline_download.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/02.Commandline_download.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Command-line Download\\n\",\n    \"\\n\",\n    \"This notebook demonstrates how to use pysradb from the command line to download SRA data.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 238\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"EU_ZNQwnHJff\",\n    \"outputId\": \"95271151-2ca0-416b-b01f-3077a1239c22\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"# pip install -U pysradb\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 34\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"FK_PzlAUHU0b\",\n    \"outputId\": \"a5c47c2f-f85e-4f68-fad0-8f549d0a8ea8\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"pysradb 2.4.1\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb --version\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"colab_type\": \"text\",\n    \"id\": \"wFEs7nMEHiZA\"\n   },\n   \"source\": [\n    \"## Get metadata for SRX (SRRs/SRS etc)\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 71\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"4Krzqj3IHX6J\",\n    \"outputId\": \"c9f0b0de-aec0-4cd1-aaae-616ae0461faa\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"experiment_accession\\trun_accession\\tstudy_accession\\tstudy_title\\texperiment_title\\texperiment_desc\\torganism_taxid\\torganism_name\\tlibrary_name\\tlibrary_strategy\\tlibrary_source\\tlibrary_selection\\tlibrary_layout\\tsample_accession\\tsample_title\\tbiosample\\tbioproject\\tinstrument\\tinstrument_model\\tinstrument_model_desc\\ttotal_spots\\ttotal_size\\trun_total_spots\\trun_total_bases\\n\",\n      \"SRX4720625\\tSRR7882015\\tSRP162234\\tTranscriptomic profile of zebrafish cardiomyocytes throughout heart development\\tGSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq\\tGSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq\\t7955\\tDanio rerio\\t\\tRNA-Seq\\tTRANSCRIPTOMIC\\tcDNA\\tPAIRED\\tSRS3805811\\t\\tSAMN10095723\\tPRJNA492280\\tNextSeq 500\\tNextSeq 500\\tILLUMINA\\t47867961\\t3470385670\\t47867961\\t7230485009\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb srx-to-srr SRX4720625\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"colab_type\": \"text\",\n    \"id\": \"yorftAz6HtFp\"\n   },\n   \"source\": [\n    \"## Get detailed metadata \"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 71\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"30cYmMXFHpRA\",\n    \"outputId\": \"1ef01d12-c84c-4524-c163-e24e565b4584\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"experiment_accession\\trun_accession\\tstudy_accession\\tstudy_title\\texperiment_title\\texperiment_desc\\torganism_taxid\\torganism_name\\tlibrary_name\\tlibrary_strategy\\tlibrary_source\\tlibrary_selection\\tlibrary_layout\\tsample_accession\\tsample_title\\tbiosample\\tbioproject\\tinstrument\\tinstrument_model\\tinstrument_model_desc\\ttotal_spots\\ttotal_size\\trun_total_spots\\trun_total_bases\\trun_alias\\tpublic_filename\\tpublic_size\\tpublic_date\\tpublic_md5\\tpublic_version\\tpublic_semantic_name\\tpublic_supertype\\tpublic_sratoolkit\\taws_url\\taws_free_egress\\taws_access_type\\tpublic_url\\tncbi_url\\tncbi_free_egress\\tncbi_access_type\\tgcp_url\\tgcp_free_egress\\tgcp_access_type\\texperiment_alias\\tsource_name\\ttissue\\tdevelopmental stage\\tgfp status\\tgenetic background\\tena_fastq_http\\tena_fastq_http_1\\tena_fastq_http_2\\tena_fastq_ftp\\tena_fastq_ftp_1\\tena_fastq_ftp_2\\n\",\n      \"SRX4720625\\tSRR7882015\\tSRP162234\\tTranscriptomic profile of zebrafish cardiomyocytes throughout heart development\\tGSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq\\tGSM3396533: wt_GFPpos_24hpf_rep1; Danio rerio; RNA-Seq\\t7955\\tDanio rerio\\t<NA>\\tRNA-Seq\\tTRANSCRIPTOMIC\\tcDNA\\tPAIRED\\tSRS3805811\\t<NA>\\tSAMN10095723\\tPRJNA492280\\tNextSeq 500\\tNextSeq 500\\tILLUMINA\\t47867961\\t3470385670\\t47867961\\t7230485009\\tGSM3396533_r1\\tSRR7882015.sralite\\t1881003321\\t2020-06-14 12:02:25\\t8161154ca4e9cf674e3f0e4af74c8455\\t1\\tSRA Lite\\tPrimary ETL\\t1\\ts3://sra-pub-zq-8/SRR7882015/SRR7882015.sralite.1\\ts3.us-east-1\\taws identity\\thttps://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882015/SRR7882015.sralite.1\\thttps://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882015/SRR7882015.sralite.1\\tworldwide\\tanonymous\\tgs://sra-pub-zq-107/SRR7882015/SRR7882015.zq.1\\tgs.us-east1\\tgcp identity\\tGSM3396533\\tFACS-sorted embryo cells\\tFACS-sorted embryo cells\\t24 hpf\\tGFP positive\\twild type\\t<NA>\\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR788/005/SRR7882015/SRR7882015_1.fastq.gz\\thttp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR788/005/SRR7882015/SRR7882015_2.fastq.gz\\t<NA>\\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR788/005/SRR7882015/SRR7882015_1.fastq.gz\\tera-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR788/005/SRR7882015/SRR7882015_2.fastq.gz\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb srx-to-srr SRX4720625 --detailed\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"colab_type\": \"text\",\n    \"id\": \"tTK_0p6JHyCI\"\n   },\n   \"source\": [\n    \"## Download all runs for a particular experiment\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"YQLxy1yzH6dQ\",\n    \"outputId\": \"6c95ae03-f70b-4536-b461-84f8c206fa84\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Checking download URLs\\n\",\n      \"The following files will be downloaded: \\n\",\n      \"\\n\",\n      \"experiment_accession run_accession study_accession public_url                                                                                                 download_url                                                                                          out_dir                                          filesize\\n\",\n      \"SRX4720625           SRR7882015    SRP162234       https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882015/SRR7882015.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882015/SRR7882015.sra /data/github/pysradb/notebooks/pysradb_downloads 1.9 GB  \\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Total size: 1.9 GB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"  0%|                                                     | 0/1 [00:00<?, ?it/s]^C\\n\",\n      \"  0%|                                                     | 0/1 [03:01<?, ?it/s]\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb srx-to-srr SRX4720625 --detailed | pysradb download\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"colab_type\": \"text\",\n    \"id\": \"sMyJ_FI_JLO_\"\n   },\n   \"source\": [\n    \"## Get metadata for entire project\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 360\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"AW1dFq7aJQwX\",\n    \"outputId\": \"d207ad87-6c46-4806-a425-7684b9d6e5d6\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"!pysradb metadata SRP162234 --detailed\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"colab_type\": \"text\",\n    \"id\": \"lH0JAN_CIAQI\"\n   },\n   \"source\": [\n    \"## Download an entire project!\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"ulqIWwndIDhJ\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Checking download URLs\\n\",\n      \"The following files will be downloaded: \\n\",\n      \"\\n\",\n      \"run_accession study_accession experiment_accession public_url                                                                                                 download_url                                                                                          out_dir                                          filesize\\n\",\n      \"SRR7882014    SRP162234       SRX4720624           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882014/SRR7882014.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882014/SRR7882014.sra /data/github/pysradb/notebooks/pysradb_downloads 843.8 MB\\n\",\n      \"SRR7882015    SRP162234       SRX4720625           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882015/SRR7882015.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882015/SRR7882015.sra /data/github/pysradb/notebooks/pysradb_downloads   1.9 GB\\n\",\n      \"SRR7882016    SRP162234       SRX4720626           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882016/SRR7882016.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882016/SRR7882016.sra /data/github/pysradb/notebooks/pysradb_downloads   1.8 GB\\n\",\n      \"SRR7882017    SRP162234       SRX4720627                     https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR007/882/SRR7882017.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882017/SRR7882017.sra /data/github/pysradb/notebooks/pysradb_downloads 991.8 MB\\n\",\n      \"SRR7882018    SRP162234       SRX4720628           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882018/SRR7882018.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882018/SRR7882018.sra /data/github/pysradb/notebooks/pysradb_downloads   2.7 GB\\n\",\n      \"SRR7882019    SRP162234       SRX4720629           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882019/SRR7882019.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882019/SRR7882019.sra /data/github/pysradb/notebooks/pysradb_downloads   2.9 GB\\n\",\n      \"SRR7882020    SRP162234       SRX4720630                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR007/882/SRR7882020.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882020/SRR7882020.sra /data/github/pysradb/notebooks/pysradb_downloads 693.3 MB\\n\",\n      \"SRR7882021    SRP162234       SRX4720631           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882021/SRR7882021.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882021/SRR7882021.sra /data/github/pysradb/notebooks/pysradb_downloads   2.5 GB\\n\",\n      \"SRR7882022    SRP162234       SRX4720632           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882022/SRR7882022.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882022/SRR7882022.sra /data/github/pysradb/notebooks/pysradb_downloads   2.6 GB\\n\",\n      \"SRR7882023    SRP162234       SRX4720633                     https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR007/882/SRR7882023.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882023/SRR7882023.sra /data/github/pysradb/notebooks/pysradb_downloads   1.1 GB\\n\",\n      \"SRR7882024    SRP162234       SRX4720634           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882024/SRR7882024.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882024/SRR7882024.sra /data/github/pysradb/notebooks/pysradb_downloads   2.2 GB\\n\",\n      \"SRR7882025    SRP162234       SRX4720635           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882025/SRR7882025.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882025/SRR7882025.sra /data/github/pysradb/notebooks/pysradb_downloads   2.4 GB\\n\",\n      \"SRR7882026    SRP162234       SRX4720636           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882026/SRR7882026.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882026/SRR7882026.sra /data/github/pysradb/notebooks/pysradb_downloads   1.9 GB\\n\",\n      \"SRR7882027    SRP162234       SRX4720637           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882027/SRR7882027.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882027/SRR7882027.sra /data/github/pysradb/notebooks/pysradb_downloads   3.8 GB\\n\",\n      \"SRR7882028    SRP162234       SRX4720638           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882028/SRR7882028.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882028/SRR7882028.sra /data/github/pysradb/notebooks/pysradb_downloads   2.5 GB\\n\",\n      \"SRR7882029    SRP162234       SRX4720639           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882029/SRR7882029.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882029/SRR7882029.sra /data/github/pysradb/notebooks/pysradb_downloads   1.2 GB\\n\",\n      \"SRR7882030    SRP162234       SRX4720640           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882030/SRR7882030.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882030/SRR7882030.sra /data/github/pysradb/notebooks/pysradb_downloads   2.5 GB\\n\",\n      \"SRR7882031    SRP162234       SRX4720641           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR007/882/SRR7882031/SRR7882031.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR788/SRR7882031/SRR7882031.sra /data/github/pysradb/notebooks/pysradb_downloads   3.1 GB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Total size: 37.5 GB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Start download?  [Y/n]: ^C\\n\",\n      \"Traceback (most recent call last):\\n\",\n      \"  File \\\"/home/saket/github/2025_iGEM/localcolabfold/colabfold-conda/bin/pysradb\\\", line 7, in <module>\\n\",\n      \"    sys.exit(parse_args())\\n\",\n      \"  File \\\"/data/github/pysradb/pysradb/cli.py\\\", line 1215, in parse_args\\n\",\n      \"    download(\\n\",\n      \"  File \\\"/data/github/pysradb/pysradb/cli.py\\\", line 111, in download\\n\",\n      \"    sradb.download(\\n\",\n      \"  File \\\"/data/github/pysradb/pysradb/sradb.py\\\", line 1543, in download\\n\",\n      \"    if not confirm(\\\"Start download? \\\"):\\n\",\n      \"  File \\\"/data/github/pysradb/pysradb/utils.py\\\", line 269, in confirm\\n\",\n      \"    choice = input(\\\"{} [Y/n]: \\\".format(preceeding_text)).lower()\\n\",\n      \"KeyboardInterrupt\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb download -p SRP162234\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"colab\": {\n   \"authorship_tag\": \"ABX9TyN0BPTWXcI8R2yJh5F/hEBk\",\n   \"collapsed_sections\": [],\n   \"include_colab_link\": true,\n   \"name\": \"02.Commandline_download\",\n   \"provenance\": []\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.12.11\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/03.ParallelDownload.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/03.ParallelDownload.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Parallel Download\\n\",\n    \"\\n\",\n    \"This notebook demonstrates how to download multiple SRA datasets in parallel using joblib.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 664\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"kdFGQ6S9OEeP\",\n    \"outputId\": \"7b4ba253-c30a-43ce-b96a-6ff22b887f5a\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"# pip install git+https://github.com/saketkc/pysradb\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 34\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"fGSXNG8LOLDI\",\n    \"outputId\": \"4d53c90e-589f-43af-a1ad-e6d6cea9d9c7\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Requirement already satisfied: joblib in /home/saket/miniforge3/lib/python3.12/site-packages (1.5.2)\\n\",\n      \"Note: you may need to restart the kernel to use updated packages.\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"pip install joblib\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"CiEBTC4IO-pn\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"from joblib import Parallel, delayed\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"6vD2huxFOMZ_\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/home/saket/miniforge3/lib/python3.12/site-packages/pysradb/utils.py:14: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.sraweb import SRAweb\\n\",\n    \"\\n\",\n    \"db = SRAweb()\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"7jm1NDReOSgP\",\n    \"outputId\": \"05ec84ac-f723-4235-a32b-5eaec0ed8462\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>source_name</th>\\n\",\n       \"      <th>cell line</th>\\n\",\n       \"      <th>treatment time</th>\\n\",\n       \"      <th>library type</th>\\n\",\n       \"      <th>ena_fastq_http</th>\\n\",\n       \"      <th>ena_fastq_http_1</th>\\n\",\n       \"      <th>ena_fastq_http_2</th>\\n\",\n       \"      <th>ena_fastq_ftp</th>\\n\",\n       \"      <th>ena_fastq_ftp_1</th>\\n\",\n       \"      <th>ena_fastq_ftp_2</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRR5227288</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536403</td>\\n\",\n       \"      <td>GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRR5227289</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536404</td>\\n\",\n       \"      <td>GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRR5227290</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536405</td>\\n\",\n       \"      <td>GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRR5227291</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536406</td>\\n\",\n       \"      <td>GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRR5227292</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536407</td>\\n\",\n       \"      <td>GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>5</th>\\n\",\n       \"      <td>SRR5227293</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536408</td>\\n\",\n       \"      <td>GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>6</th>\\n\",\n       \"      <td>SRR5227294</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536409</td>\\n\",\n       \"      <td>GSM2476003: vehicle, 10 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476003: vehicle, 10 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>7</th>\\n\",\n       \"      <td>SRR5227295</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536410</td>\\n\",\n       \"      <td>GSM2476004: vehicle, 10 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476004: vehicle, 10 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>8</th>\\n\",\n       \"      <td>SRR5227296</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536411</td>\\n\",\n       \"      <td>GSM2476005: vehicle, 10 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476005: vehicle, 10 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>9</th>\\n\",\n       \"      <td>SRR5227297</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536412</td>\\n\",\n       \"      <td>GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>10</th>\\n\",\n       \"      <td>SRR5227298</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536413</td>\\n\",\n       \"      <td>GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>11</th>\\n\",\n       \"      <td>SRR5227299</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536414</td>\\n\",\n       \"      <td>GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>12</th>\\n\",\n       \"      <td>SRR5227300</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536415</td>\\n\",\n       \"      <td>GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>13</th>\\n\",\n       \"      <td>SRR5227301</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536416</td>\\n\",\n       \"      <td>GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>14</th>\\n\",\n       \"      <td>SRR5227302</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536417</td>\\n\",\n       \"      <td>GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>15</th>\\n\",\n       \"      <td>SRR5227303</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536418</td>\\n\",\n       \"      <td>GSM2476012: vehicle, 60 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476012: vehicle, 60 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>16</th>\\n\",\n       \"      <td>SRR5227304</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536419</td>\\n\",\n       \"      <td>GSM2476013: vehicle, 60 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476013: vehicle, 60 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>17</th>\\n\",\n       \"      <td>SRR5227305</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536420</td>\\n\",\n       \"      <td>GSM2476014: vehicle, 60 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476014: vehicle, 60 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>18</th>\\n\",\n       \"      <td>SRR5227306</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536421</td>\\n\",\n       \"      <td>GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...</td>\\n\",\n       \"      <td>GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>19</th>\\n\",\n       \"      <td>SRR5227307</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536422</td>\\n\",\n       \"      <td>GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...</td>\\n\",\n       \"      <td>GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_Veh_60 min_Ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>Ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>20</th>\\n\",\n       \"      <td>SRR5227308</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536423</td>\\n\",\n       \"      <td>GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...</td>\\n\",\n       \"      <td>GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>21</th>\\n\",\n       \"      <td>SRR5227309</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536424</td>\\n\",\n       \"      <td>GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...</td>\\n\",\n       \"      <td>GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehcile_60 min_Ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>Ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>22</th>\\n\",\n       \"      <td>SRR5227310</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536425</td>\\n\",\n       \"      <td>GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...</td>\\n\",\n       \"      <td>GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_PF-06446846_60 min_mRNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>mRNA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>23</th>\\n\",\n       \"      <td>SRR5227311</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536426</td>\\n\",\n       \"      <td>GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...</td>\\n\",\n       \"      <td>GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_RNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>polyA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>24</th>\\n\",\n       \"      <td>SRR5227312</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536427</td>\\n\",\n       \"      <td>GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...</td>\\n\",\n       \"      <td>GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_PF-06446846_60 min_mRNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>mRNA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>25</th>\\n\",\n       \"      <td>SRR5227313</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536428</td>\\n\",\n       \"      <td>GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...</td>\\n\",\n       \"      <td>GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_RNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>polyA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>26 rows × 54 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   run_accession study_accession  \\\\\\n\",\n       \"0     SRR5227288       SRP098789   \\n\",\n       \"1     SRR5227289       SRP098789   \\n\",\n       \"2     SRR5227290       SRP098789   \\n\",\n       \"3     SRR5227291       SRP098789   \\n\",\n       \"4     SRR5227292       SRP098789   \\n\",\n       \"5     SRR5227293       SRP098789   \\n\",\n       \"6     SRR5227294       SRP098789   \\n\",\n       \"7     SRR5227295       SRP098789   \\n\",\n       \"8     SRR5227296       SRP098789   \\n\",\n       \"9     SRR5227297       SRP098789   \\n\",\n       \"10    SRR5227298       SRP098789   \\n\",\n       \"11    SRR5227299       SRP098789   \\n\",\n       \"12    SRR5227300       SRP098789   \\n\",\n       \"13    SRR5227301       SRP098789   \\n\",\n       \"14    SRR5227302       SRP098789   \\n\",\n       \"15    SRR5227303       SRP098789   \\n\",\n       \"16    SRR5227304       SRP098789   \\n\",\n       \"17    SRR5227305       SRP098789   \\n\",\n       \"18    SRR5227306       SRP098789   \\n\",\n       \"19    SRR5227307       SRP098789   \\n\",\n       \"20    SRR5227308       SRP098789   \\n\",\n       \"21    SRR5227309       SRP098789   \\n\",\n       \"22    SRR5227310       SRP098789   \\n\",\n       \"23    SRR5227311       SRP098789   \\n\",\n       \"24    SRR5227312       SRP098789   \\n\",\n       \"25    SRR5227313       SRP098789   \\n\",\n       \"\\n\",\n       \"                                          study_title experiment_accession  \\\\\\n\",\n       \"0   Selective stalling of human translation throug...           SRX2536403   \\n\",\n       \"1   Selective stalling of human translation throug...           SRX2536404   \\n\",\n       \"2   Selective stalling of human translation throug...           SRX2536405   \\n\",\n       \"3   Selective stalling of human translation throug...           SRX2536406   \\n\",\n       \"4   Selective stalling of human translation throug...           SRX2536407   \\n\",\n       \"5   Selective stalling of human translation throug...           SRX2536408   \\n\",\n       \"6   Selective stalling of human translation throug...           SRX2536409   \\n\",\n       \"7   Selective stalling of human translation throug...           SRX2536410   \\n\",\n       \"8   Selective stalling of human translation throug...           SRX2536411   \\n\",\n       \"9   Selective stalling of human translation throug...           SRX2536412   \\n\",\n       \"10  Selective stalling of human translation throug...           SRX2536413   \\n\",\n       \"11  Selective stalling of human translation throug...           SRX2536414   \\n\",\n       \"12  Selective stalling of human translation throug...           SRX2536415   \\n\",\n       \"13  Selective stalling of human translation throug...           SRX2536416   \\n\",\n       \"14  Selective stalling of human translation throug...           SRX2536417   \\n\",\n       \"15  Selective stalling of human translation throug...           SRX2536418   \\n\",\n       \"16  Selective stalling of human translation throug...           SRX2536419   \\n\",\n       \"17  Selective stalling of human translation throug...           SRX2536420   \\n\",\n       \"18  Selective stalling of human translation throug...           SRX2536421   \\n\",\n       \"19  Selective stalling of human translation throug...           SRX2536422   \\n\",\n       \"20  Selective stalling of human translation throug...           SRX2536423   \\n\",\n       \"21  Selective stalling of human translation throug...           SRX2536424   \\n\",\n       \"22  Selective stalling of human translation throug...           SRX2536425   \\n\",\n       \"23  Selective stalling of human translation throug...           SRX2536426   \\n\",\n       \"24  Selective stalling of human translation throug...           SRX2536427   \\n\",\n       \"25  Selective stalling of human translation throug...           SRX2536428   \\n\",\n       \"\\n\",\n       \"                                     experiment_title  \\\\\\n\",\n       \"0   GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...   \\n\",\n       \"1   GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...   \\n\",\n       \"2   GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...   \\n\",\n       \"3   GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...   \\n\",\n       \"4   GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...   \\n\",\n       \"5   GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...   \\n\",\n       \"6   GSM2476003: vehicle, 10 min rep 1; Homo sapien...   \\n\",\n       \"7   GSM2476004: vehicle, 10 min rep 2; Homo sapien...   \\n\",\n       \"8   GSM2476005: vehicle, 10 min rep 3; Homo sapien...   \\n\",\n       \"9   GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...   \\n\",\n       \"10  GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...   \\n\",\n       \"11  GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...   \\n\",\n       \"12  GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...   \\n\",\n       \"13  GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...   \\n\",\n       \"14  GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...   \\n\",\n       \"15  GSM2476012: vehicle, 60 min rep 1; Homo sapien...   \\n\",\n       \"16  GSM2476013: vehicle, 60 min rep 2; Homo sapien...   \\n\",\n       \"17  GSM2476014: vehicle, 60 min rep 3; Homo sapien...   \\n\",\n       \"18  GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...   \\n\",\n       \"19  GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...   \\n\",\n       \"20  GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...   \\n\",\n       \"21  GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...   \\n\",\n       \"22  GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...   \\n\",\n       \"23  GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...   \\n\",\n       \"24  GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...   \\n\",\n       \"25  GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...   \\n\",\n       \"\\n\",\n       \"                                      experiment_desc organism_taxid  \\\\\\n\",\n       \"0   GSM2475997: 1.5 µM PF-067446846, 10 min, rep 1...           9606   \\n\",\n       \"1   GSM2475998: 1.5 µM PF-067446846, 10 min, rep 2...           9606   \\n\",\n       \"2   GSM2475999: 1.5 µM PF-067446846, 10 min, rep 3...           9606   \\n\",\n       \"3   GSM2476000: 0.3 µM PF-067446846, 10 min, rep 1...           9606   \\n\",\n       \"4   GSM2476001: 0.3 µM PF-067446846, 10 min, rep 2...           9606   \\n\",\n       \"5   GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...           9606   \\n\",\n       \"6   GSM2476003: vehicle, 10 min rep 1; Homo sapien...           9606   \\n\",\n       \"7   GSM2476004: vehicle, 10 min rep 2; Homo sapien...           9606   \\n\",\n       \"8   GSM2476005: vehicle, 10 min rep 3; Homo sapien...           9606   \\n\",\n       \"9   GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...           9606   \\n\",\n       \"10  GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...           9606   \\n\",\n       \"11  GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...           9606   \\n\",\n       \"12  GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...           9606   \\n\",\n       \"13  GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...           9606   \\n\",\n       \"14  GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...           9606   \\n\",\n       \"15  GSM2476012: vehicle, 60 min rep 1; Homo sapien...           9606   \\n\",\n       \"16  GSM2476013: vehicle, 60 min rep 2; Homo sapien...           9606   \\n\",\n       \"17  GSM2476014: vehicle, 60 min rep 3; Homo sapien...           9606   \\n\",\n       \"18  GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...           9606   \\n\",\n       \"19  GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...           9606   \\n\",\n       \"20  GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...           9606   \\n\",\n       \"21  GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...           9606   \\n\",\n       \"22  GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...           9606   \\n\",\n       \"23  GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...           9606   \\n\",\n       \"24  GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...           9606   \\n\",\n       \"25  GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...           9606   \\n\",\n       \"\\n\",\n       \"   organism_name library_name library_strategy  ...  \\\\\\n\",\n       \"0   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"1   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"2   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"3   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"4   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"5   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"6   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"7   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"8   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"9   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"10  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"11  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"12  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"13  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"14  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"15  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"16  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"17  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"18  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"19  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"20  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"21  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"22  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"23  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"24  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"25  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"\\n\",\n       \"                                  source_name cell line treatment time  \\\\\\n\",\n       \"0   Huh7_1.5 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"1   Huh7_1.5 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"2   Huh7_1.5 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"3   Huh7_0.3 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"4   Huh7_0.3 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"5   Huh7_0.3 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"6                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"7                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"8                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"9   Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"10  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"11  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"12  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"13  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"14  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"15               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"16               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"17               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"18  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"19                   Huh7_Veh_60 min_Ribo-seq      Huh7         60 min   \\n\",\n       \"20  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"21               Huh7_vehcile_60 min_Ribo-seq      Huh7         60 min   \\n\",\n       \"22           Huh7_PF-06446846_60 min_mRNA-seq      Huh7         60 min   \\n\",\n       \"23                Huh7_vehicle_60 min_RNA-seq      Huh7         60 min   \\n\",\n       \"24           Huh7_PF-06446846_60 min_mRNA-seq      Huh7         60 min   \\n\",\n       \"25                Huh7_vehicle_60 min_RNA-seq      Huh7         60 min   \\n\",\n       \"\\n\",\n       \"   library type                                     ena_fastq_http  \\\\\\n\",\n       \"0      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...   \\n\",\n       \"1      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...   \\n\",\n       \"2      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...   \\n\",\n       \"3      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...   \\n\",\n       \"4      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...   \\n\",\n       \"5      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"6      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...   \\n\",\n       \"7      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...   \\n\",\n       \"8      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...   \\n\",\n       \"9      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...   \\n\",\n       \"10     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...   \\n\",\n       \"11     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...   \\n\",\n       \"12     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...   \\n\",\n       \"13     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...   \\n\",\n       \"14     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...   \\n\",\n       \"15     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"16     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...   \\n\",\n       \"17     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...   \\n\",\n       \"18     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...   \\n\",\n       \"19     Ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...   \\n\",\n       \"20     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...   \\n\",\n       \"21     Ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...   \\n\",\n       \"22     mRNA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...   \\n\",\n       \"23    polyA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...   \\n\",\n       \"24     mRNA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...   \\n\",\n       \"25    polyA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"\\n\",\n       \"   ena_fastq_http_1 ena_fastq_http_2  \\\\\\n\",\n       \"0              <NA>             <NA>   \\n\",\n       \"1              <NA>             <NA>   \\n\",\n       \"2              <NA>             <NA>   \\n\",\n       \"3              <NA>             <NA>   \\n\",\n       \"4              <NA>             <NA>   \\n\",\n       \"5              <NA>             <NA>   \\n\",\n       \"6              <NA>             <NA>   \\n\",\n       \"7              <NA>             <NA>   \\n\",\n       \"8              <NA>             <NA>   \\n\",\n       \"9              <NA>             <NA>   \\n\",\n       \"10             <NA>             <NA>   \\n\",\n       \"11             <NA>             <NA>   \\n\",\n       \"12             <NA>             <NA>   \\n\",\n       \"13             <NA>             <NA>   \\n\",\n       \"14             <NA>             <NA>   \\n\",\n       \"15             <NA>             <NA>   \\n\",\n       \"16             <NA>             <NA>   \\n\",\n       \"17             <NA>             <NA>   \\n\",\n       \"18             <NA>             <NA>   \\n\",\n       \"19             <NA>             <NA>   \\n\",\n       \"20             <NA>             <NA>   \\n\",\n       \"21             <NA>             <NA>   \\n\",\n       \"22             <NA>             <NA>   \\n\",\n       \"23             <NA>             <NA>   \\n\",\n       \"24             <NA>             <NA>   \\n\",\n       \"25             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"                                        ena_fastq_ftp ena_fastq_ftp_1  \\\\\\n\",\n       \"0   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"1   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"2   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"3   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"4   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"5   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"6   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"7   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"8   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"9   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"10  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"11  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"12  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"13  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"14  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"15  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"16  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"17  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"18  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"19  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"20  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"21  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"22  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"23  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"24  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"25  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"\\n\",\n       \"   ena_fastq_ftp_2  \\n\",\n       \"0             <NA>  \\n\",\n       \"1             <NA>  \\n\",\n       \"2             <NA>  \\n\",\n       \"3             <NA>  \\n\",\n       \"4             <NA>  \\n\",\n       \"5             <NA>  \\n\",\n       \"6             <NA>  \\n\",\n       \"7             <NA>  \\n\",\n       \"8             <NA>  \\n\",\n       \"9             <NA>  \\n\",\n       \"10            <NA>  \\n\",\n       \"11            <NA>  \\n\",\n       \"12            <NA>  \\n\",\n       \"13            <NA>  \\n\",\n       \"14            <NA>  \\n\",\n       \"15            <NA>  \\n\",\n       \"16            <NA>  \\n\",\n       \"17            <NA>  \\n\",\n       \"18            <NA>  \\n\",\n       \"19            <NA>  \\n\",\n       \"20            <NA>  \\n\",\n       \"21            <NA>  \\n\",\n       \"22            <NA>  \\n\",\n       \"23            <NA>  \\n\",\n       \"24            <NA>  \\n\",\n       \"25            <NA>  \\n\",\n       \"\\n\",\n       \"[26 rows x 54 columns]\"\n      ]\n     },\n     \"execution_count\": 5,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df = db.sra_metadata(\\\"SRP098789\\\", detailed=True)\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 6,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"QqjoVmskOegP\",\n    \"outputId\": \"f8973741-bbf3-4988-aff7-ba09636a80e6\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_title</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>source_name</th>\\n\",\n       \"      <th>cell line</th>\\n\",\n       \"      <th>treatment time</th>\\n\",\n       \"      <th>library type</th>\\n\",\n       \"      <th>ena_fastq_http</th>\\n\",\n       \"      <th>ena_fastq_http_1</th>\\n\",\n       \"      <th>ena_fastq_http_2</th>\\n\",\n       \"      <th>ena_fastq_ftp</th>\\n\",\n       \"      <th>ena_fastq_ftp_1</th>\\n\",\n       \"      <th>ena_fastq_ftp_2</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>5</th>\\n\",\n       \"      <td>SRR5227293</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536408</td>\\n\",\n       \"      <td>GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>6</th>\\n\",\n       \"      <td>SRR5227294</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536409</td>\\n\",\n       \"      <td>GSM2476003: vehicle, 10 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476003: vehicle, 10 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>7</th>\\n\",\n       \"      <td>SRR5227295</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536410</td>\\n\",\n       \"      <td>GSM2476004: vehicle, 10 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476004: vehicle, 10 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>8</th>\\n\",\n       \"      <td>SRR5227296</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536411</td>\\n\",\n       \"      <td>GSM2476005: vehicle, 10 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476005: vehicle, 10 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_10 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>10 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>9</th>\\n\",\n       \"      <td>SRR5227297</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536412</td>\\n\",\n       \"      <td>GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>10</th>\\n\",\n       \"      <td>SRR5227298</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536413</td>\\n\",\n       \"      <td>GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>11</th>\\n\",\n       \"      <td>SRR5227299</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536414</td>\\n\",\n       \"      <td>GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>12</th>\\n\",\n       \"      <td>SRR5227300</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536415</td>\\n\",\n       \"      <td>GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>13</th>\\n\",\n       \"      <td>SRR5227301</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536416</td>\\n\",\n       \"      <td>GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>14</th>\\n\",\n       \"      <td>SRR5227302</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536417</td>\\n\",\n       \"      <td>GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_0.3 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>15</th>\\n\",\n       \"      <td>SRR5227303</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536418</td>\\n\",\n       \"      <td>GSM2476012: vehicle, 60 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476012: vehicle, 60 min rep 1; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>16</th>\\n\",\n       \"      <td>SRR5227304</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536419</td>\\n\",\n       \"      <td>GSM2476013: vehicle, 60 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476013: vehicle, 60 min rep 2; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>17</th>\\n\",\n       \"      <td>SRR5227305</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536420</td>\\n\",\n       \"      <td>GSM2476014: vehicle, 60 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>GSM2476014: vehicle, 60 min rep 3; Homo sapien...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>18</th>\\n\",\n       \"      <td>SRR5227306</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536421</td>\\n\",\n       \"      <td>GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...</td>\\n\",\n       \"      <td>GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>19</th>\\n\",\n       \"      <td>SRR5227307</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536422</td>\\n\",\n       \"      <td>GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...</td>\\n\",\n       \"      <td>GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_Veh_60 min_Ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>Ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>20</th>\\n\",\n       \"      <td>SRR5227308</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536423</td>\\n\",\n       \"      <td>GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...</td>\\n\",\n       \"      <td>GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_1.5 µM PF-067446846_60 min_ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>21</th>\\n\",\n       \"      <td>SRR5227309</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536424</td>\\n\",\n       \"      <td>GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...</td>\\n\",\n       \"      <td>GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehcile_60 min_Ribo-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>Ribo-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>22</th>\\n\",\n       \"      <td>SRR5227310</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536425</td>\\n\",\n       \"      <td>GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...</td>\\n\",\n       \"      <td>GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_PF-06446846_60 min_mRNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>mRNA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>23</th>\\n\",\n       \"      <td>SRR5227311</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536426</td>\\n\",\n       \"      <td>GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...</td>\\n\",\n       \"      <td>GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_RNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>polyA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>24</th>\\n\",\n       \"      <td>SRR5227312</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536427</td>\\n\",\n       \"      <td>GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...</td>\\n\",\n       \"      <td>GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>OTHER</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_PF-06446846_60 min_mRNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>mRNA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>25</th>\\n\",\n       \"      <td>SRR5227313</td>\\n\",\n       \"      <td>SRP098789</td>\\n\",\n       \"      <td>Selective stalling of human translation throug...</td>\\n\",\n       \"      <td>SRX2536428</td>\\n\",\n       \"      <td>GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...</td>\\n\",\n       \"      <td>GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>Huh7_vehicle_60 min_RNA-seq</td>\\n\",\n       \"      <td>Huh7</td>\\n\",\n       \"      <td>60 min</td>\\n\",\n       \"      <td>polyA-seq</td>\\n\",\n       \"      <td>http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>21 rows × 54 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   run_accession study_accession  \\\\\\n\",\n       \"5     SRR5227293       SRP098789   \\n\",\n       \"6     SRR5227294       SRP098789   \\n\",\n       \"7     SRR5227295       SRP098789   \\n\",\n       \"8     SRR5227296       SRP098789   \\n\",\n       \"9     SRR5227297       SRP098789   \\n\",\n       \"10    SRR5227298       SRP098789   \\n\",\n       \"11    SRR5227299       SRP098789   \\n\",\n       \"12    SRR5227300       SRP098789   \\n\",\n       \"13    SRR5227301       SRP098789   \\n\",\n       \"14    SRR5227302       SRP098789   \\n\",\n       \"15    SRR5227303       SRP098789   \\n\",\n       \"16    SRR5227304       SRP098789   \\n\",\n       \"17    SRR5227305       SRP098789   \\n\",\n       \"18    SRR5227306       SRP098789   \\n\",\n       \"19    SRR5227307       SRP098789   \\n\",\n       \"20    SRR5227308       SRP098789   \\n\",\n       \"21    SRR5227309       SRP098789   \\n\",\n       \"22    SRR5227310       SRP098789   \\n\",\n       \"23    SRR5227311       SRP098789   \\n\",\n       \"24    SRR5227312       SRP098789   \\n\",\n       \"25    SRR5227313       SRP098789   \\n\",\n       \"\\n\",\n       \"                                          study_title experiment_accession  \\\\\\n\",\n       \"5   Selective stalling of human translation throug...           SRX2536408   \\n\",\n       \"6   Selective stalling of human translation throug...           SRX2536409   \\n\",\n       \"7   Selective stalling of human translation throug...           SRX2536410   \\n\",\n       \"8   Selective stalling of human translation throug...           SRX2536411   \\n\",\n       \"9   Selective stalling of human translation throug...           SRX2536412   \\n\",\n       \"10  Selective stalling of human translation throug...           SRX2536413   \\n\",\n       \"11  Selective stalling of human translation throug...           SRX2536414   \\n\",\n       \"12  Selective stalling of human translation throug...           SRX2536415   \\n\",\n       \"13  Selective stalling of human translation throug...           SRX2536416   \\n\",\n       \"14  Selective stalling of human translation throug...           SRX2536417   \\n\",\n       \"15  Selective stalling of human translation throug...           SRX2536418   \\n\",\n       \"16  Selective stalling of human translation throug...           SRX2536419   \\n\",\n       \"17  Selective stalling of human translation throug...           SRX2536420   \\n\",\n       \"18  Selective stalling of human translation throug...           SRX2536421   \\n\",\n       \"19  Selective stalling of human translation throug...           SRX2536422   \\n\",\n       \"20  Selective stalling of human translation throug...           SRX2536423   \\n\",\n       \"21  Selective stalling of human translation throug...           SRX2536424   \\n\",\n       \"22  Selective stalling of human translation throug...           SRX2536425   \\n\",\n       \"23  Selective stalling of human translation throug...           SRX2536426   \\n\",\n       \"24  Selective stalling of human translation throug...           SRX2536427   \\n\",\n       \"25  Selective stalling of human translation throug...           SRX2536428   \\n\",\n       \"\\n\",\n       \"                                     experiment_title  \\\\\\n\",\n       \"5   GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...   \\n\",\n       \"6   GSM2476003: vehicle, 10 min rep 1; Homo sapien...   \\n\",\n       \"7   GSM2476004: vehicle, 10 min rep 2; Homo sapien...   \\n\",\n       \"8   GSM2476005: vehicle, 10 min rep 3; Homo sapien...   \\n\",\n       \"9   GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...   \\n\",\n       \"10  GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...   \\n\",\n       \"11  GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...   \\n\",\n       \"12  GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...   \\n\",\n       \"13  GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...   \\n\",\n       \"14  GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...   \\n\",\n       \"15  GSM2476012: vehicle, 60 min rep 1; Homo sapien...   \\n\",\n       \"16  GSM2476013: vehicle, 60 min rep 2; Homo sapien...   \\n\",\n       \"17  GSM2476014: vehicle, 60 min rep 3; Homo sapien...   \\n\",\n       \"18  GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...   \\n\",\n       \"19  GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...   \\n\",\n       \"20  GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...   \\n\",\n       \"21  GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...   \\n\",\n       \"22  GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...   \\n\",\n       \"23  GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...   \\n\",\n       \"24  GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...   \\n\",\n       \"25  GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...   \\n\",\n       \"\\n\",\n       \"                                      experiment_desc organism_taxid  \\\\\\n\",\n       \"5   GSM2476002: 0.3 µM PF-067446846, 10 min, rep 3...           9606   \\n\",\n       \"6   GSM2476003: vehicle, 10 min rep 1; Homo sapien...           9606   \\n\",\n       \"7   GSM2476004: vehicle, 10 min rep 2; Homo sapien...           9606   \\n\",\n       \"8   GSM2476005: vehicle, 10 min rep 3; Homo sapien...           9606   \\n\",\n       \"9   GSM2476006: 1.5 µM PF-067446846, 60 min, rep 1...           9606   \\n\",\n       \"10  GSM2476007: 1.5 µM PF-067446846, 60 min, rep 2...           9606   \\n\",\n       \"11  GSM2476008: 1.5 µM PF-067446846, 60 min, rep 3...           9606   \\n\",\n       \"12  GSM2476009: 0.3 µM PF-067446846, 60 min, rep 1...           9606   \\n\",\n       \"13  GSM2476010: 0.3 µM PF-067446846, 60 min, rep 2...           9606   \\n\",\n       \"14  GSM2476011: 0.3 µM PF-067446846, 60 min, rep 3...           9606   \\n\",\n       \"15  GSM2476012: vehicle, 60 min rep 1; Homo sapien...           9606   \\n\",\n       \"16  GSM2476013: vehicle, 60 min rep 2; Homo sapien...           9606   \\n\",\n       \"17  GSM2476014: vehicle, 60 min rep 3; Homo sapien...           9606   \\n\",\n       \"18  GSM2476015: 1.5 µM PF-067446846, 60 min, rep 4...           9606   \\n\",\n       \"19  GSM2476016: Vehicle, 60 min, rep 4-ribo-seq; H...           9606   \\n\",\n       \"20  GSM2476017: 1.5 µM PF-067446846, 60 min, rep 5...           9606   \\n\",\n       \"21  GSM2476018: vehicle, 60 min, rep 5-Ribo-seq; H...           9606   \\n\",\n       \"22  GSM2476019: PF-06446846, 60 min, rep 4 -mRNA-s...           9606   \\n\",\n       \"23  GSM2476020: vehicle, 60 min, rep 4-mRNAseq; Ho...           9606   \\n\",\n       \"24  GSM2476021: PF-06446846, 60 min, rep 5 -mRNA-s...           9606   \\n\",\n       \"25  GSM2476022: vehicle, 60 min, rep 5-mRNAseq; Ho...           9606   \\n\",\n       \"\\n\",\n       \"   organism_name library_name library_strategy  ...  \\\\\\n\",\n       \"5   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"6   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"7   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"8   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"9   Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"10  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"11  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"12  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"13  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"14  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"15  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"16  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"17  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"18  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"19  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"20  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"21  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"22  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"23  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"24  Homo sapiens         <NA>            OTHER  ...   \\n\",\n       \"25  Homo sapiens         <NA>          RNA-Seq  ...   \\n\",\n       \"\\n\",\n       \"                                  source_name cell line treatment time  \\\\\\n\",\n       \"5   Huh7_0.3 µM PF-067446846_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"6                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"7                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"8                Huh7_vehicle_10 min_ribo-seq      Huh7         10 min   \\n\",\n       \"9   Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"10  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"11  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"12  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"13  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"14  Huh7_0.3 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"15               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"16               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"17               Huh7_vehicle_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"18  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"19                   Huh7_Veh_60 min_Ribo-seq      Huh7         60 min   \\n\",\n       \"20  Huh7_1.5 µM PF-067446846_60 min_ribo-seq      Huh7         60 min   \\n\",\n       \"21               Huh7_vehcile_60 min_Ribo-seq      Huh7         60 min   \\n\",\n       \"22           Huh7_PF-06446846_60 min_mRNA-seq      Huh7         60 min   \\n\",\n       \"23                Huh7_vehicle_60 min_RNA-seq      Huh7         60 min   \\n\",\n       \"24           Huh7_PF-06446846_60 min_mRNA-seq      Huh7         60 min   \\n\",\n       \"25                Huh7_vehicle_60 min_RNA-seq      Huh7         60 min   \\n\",\n       \"\\n\",\n       \"   library type                                     ena_fastq_http  \\\\\\n\",\n       \"5      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"6      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...   \\n\",\n       \"7      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...   \\n\",\n       \"8      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...   \\n\",\n       \"9      ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...   \\n\",\n       \"10     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...   \\n\",\n       \"11     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...   \\n\",\n       \"12     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...   \\n\",\n       \"13     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...   \\n\",\n       \"14     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...   \\n\",\n       \"15     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"16     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/004...   \\n\",\n       \"17     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/005...   \\n\",\n       \"18     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/006...   \\n\",\n       \"19     Ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/007...   \\n\",\n       \"20     ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/008...   \\n\",\n       \"21     Ribo-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/009...   \\n\",\n       \"22     mRNA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/000...   \\n\",\n       \"23    polyA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/001...   \\n\",\n       \"24     mRNA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002...   \\n\",\n       \"25    polyA-seq  http://ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003...   \\n\",\n       \"\\n\",\n       \"   ena_fastq_http_1 ena_fastq_http_2  \\\\\\n\",\n       \"5              <NA>             <NA>   \\n\",\n       \"6              <NA>             <NA>   \\n\",\n       \"7              <NA>             <NA>   \\n\",\n       \"8              <NA>             <NA>   \\n\",\n       \"9              <NA>             <NA>   \\n\",\n       \"10             <NA>             <NA>   \\n\",\n       \"11             <NA>             <NA>   \\n\",\n       \"12             <NA>             <NA>   \\n\",\n       \"13             <NA>             <NA>   \\n\",\n       \"14             <NA>             <NA>   \\n\",\n       \"15             <NA>             <NA>   \\n\",\n       \"16             <NA>             <NA>   \\n\",\n       \"17             <NA>             <NA>   \\n\",\n       \"18             <NA>             <NA>   \\n\",\n       \"19             <NA>             <NA>   \\n\",\n       \"20             <NA>             <NA>   \\n\",\n       \"21             <NA>             <NA>   \\n\",\n       \"22             <NA>             <NA>   \\n\",\n       \"23             <NA>             <NA>   \\n\",\n       \"24             <NA>             <NA>   \\n\",\n       \"25             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"                                        ena_fastq_ftp ena_fastq_ftp_1  \\\\\\n\",\n       \"5   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"6   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"7   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"8   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"9   era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"10  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"11  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"12  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"13  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"14  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"15  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"16  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"17  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"18  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"19  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"20  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"21  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"22  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"23  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"24  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"25  era-fasp@fasp.sra.ebi.ac.uk:vol1/fastq/SRR522/...            <NA>   \\n\",\n       \"\\n\",\n       \"   ena_fastq_ftp_2  \\n\",\n       \"5             <NA>  \\n\",\n       \"6             <NA>  \\n\",\n       \"7             <NA>  \\n\",\n       \"8             <NA>  \\n\",\n       \"9             <NA>  \\n\",\n       \"10            <NA>  \\n\",\n       \"11            <NA>  \\n\",\n       \"12            <NA>  \\n\",\n       \"13            <NA>  \\n\",\n       \"14            <NA>  \\n\",\n       \"15            <NA>  \\n\",\n       \"16            <NA>  \\n\",\n       \"17            <NA>  \\n\",\n       \"18            <NA>  \\n\",\n       \"19            <NA>  \\n\",\n       \"20            <NA>  \\n\",\n       \"21            <NA>  \\n\",\n       \"22            <NA>  \\n\",\n       \"23            <NA>  \\n\",\n       \"24            <NA>  \\n\",\n       \"25            <NA>  \\n\",\n       \"\\n\",\n       \"[21 rows x 54 columns]\"\n      ]\n     },\n     \"execution_count\": 6,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# randomply split into two dataframes\\n\",\n    \"df1, df2 = df.iloc[:5, :], df.iloc[5:, :]\\n\",\n    \"\\n\",\n    \"df2\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"Wbelu2eNO4d_\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"def single_download(df_single):\\n\",\n    \"    db.download(df=df_single, skip_confirmation=True)\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"r2TzSAZ0PSIe\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Checking download URLs\\n\",\n      \"Checking download URLs\\n\",\n      \"The following files will be downloaded: \\n\",\n      \"\\n\",\n      \"run_accession study_accession experiment_accession public_url                                                                                                 download_url                                                                                          out_dir                                          filesize\\n\",\n      \"SRR5227288    SRP098789       SRX2536403           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR005/227/SRR5227288/SRR5227288.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227288/SRR5227288.sra /data/github/pysradb/notebooks/pysradb_downloads 533.5 MB\\n\",\n      \"SRR5227289    SRP098789       SRX2536404           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR005/227/SRR5227289/SRR5227289.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227289/SRR5227289.sra /data/github/pysradb/notebooks/pysradb_downloads 603.2 MB\\n\",\n      \"SRR5227290    SRP098789       SRX2536405           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR005/227/SRR5227290/SRR5227290.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227290/SRR5227290.sra /data/github/pysradb/notebooks/pysradb_downloads 586.1 MB\\n\",\n      \"SRR5227291    SRP098789       SRX2536406                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227291.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227291/SRR5227291.sra /data/github/pysradb/notebooks/pysradb_downloads 521.5 MB\\n\",\n      \"SRR5227292    SRP098789       SRX2536407                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227292.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227292/SRR5227292.sra /data/github/pysradb/notebooks/pysradb_downloads 871.3 MB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Total size: 3.1 GB\\n\",\n      \"\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"  0%|          | 0/5 [00:00<?, ?it/s]\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"The following files will be downloaded: \\n\",\n      \"\\n\",\n      \"run_accession study_accession experiment_accession public_url                                                                                                 download_url                                                                                          out_dir                                          filesize\\n\",\n      \"SRR5227293    SRP098789       SRX2536408                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227293.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227293/SRR5227293.sra /data/github/pysradb/notebooks/pysradb_downloads 616.6 MB\\n\",\n      \"SRR5227294    SRP098789       SRX2536409                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227294.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227294/SRR5227294.sra /data/github/pysradb/notebooks/pysradb_downloads 962.4 MB\\n\",\n      \"SRR5227295    SRP098789       SRX2536410                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227295.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227295/SRR5227295.sra /data/github/pysradb/notebooks/pysradb_downloads 668.3 MB\\n\",\n      \"SRR5227296    SRP098789       SRX2536411                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227296.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227296/SRR5227296.sra /data/github/pysradb/notebooks/pysradb_downloads 755.3 MB\\n\",\n      \"SRR5227297    SRP098789       SRX2536412                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227297.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227297/SRR5227297.sra /data/github/pysradb/notebooks/pysradb_downloads 869.8 MB\\n\",\n      \"SRR5227298    SRP098789       SRX2536413                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227298.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227298/SRR5227298.sra /data/github/pysradb/notebooks/pysradb_downloads 681.0 MB\\n\",\n      \"SRR5227299    SRP098789       SRX2536414                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227299.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227299/SRR5227299.sra /data/github/pysradb/notebooks/pysradb_downloads 702.4 MB\\n\",\n      \"SRR5227300    SRP098789       SRX2536415                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227300.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227300/SRR5227300.sra /data/github/pysradb/notebooks/pysradb_downloads 438.7 MB\\n\",\n      \"SRR5227301    SRP098789       SRX2536416                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227301.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227301/SRR5227301.sra /data/github/pysradb/notebooks/pysradb_downloads 707.4 MB\\n\",\n      \"SRR5227302    SRP098789       SRX2536417                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227302.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227302/SRR5227302.sra /data/github/pysradb/notebooks/pysradb_downloads 642.3 MB\\n\",\n      \"SRR5227303    SRP098789       SRX2536418                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227303.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227303/SRR5227303.sra /data/github/pysradb/notebooks/pysradb_downloads 733.0 MB\\n\",\n      \"SRR5227304    SRP098789       SRX2536419                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227304.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227304/SRR5227304.sra /data/github/pysradb/notebooks/pysradb_downloads 682.1 MB\\n\",\n      \"SRR5227305    SRP098789       SRX2536420                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227305.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227305/SRR5227305.sra /data/github/pysradb/notebooks/pysradb_downloads 698.4 MB\\n\",\n      \"SRR5227306    SRP098789       SRX2536421                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227306.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227306/SRR5227306.sra /data/github/pysradb/notebooks/pysradb_downloads 838.8 MB\\n\",\n      \"SRR5227307    SRP098789       SRX2536422                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227307.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227307/SRR5227307.sra /data/github/pysradb/notebooks/pysradb_downloads 965.8 MB\\n\",\n      \"SRR5227308    SRP098789       SRX2536423           https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-11/SRR005/227/SRR5227308/SRR5227308.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227308/SRR5227308.sra /data/github/pysradb/notebooks/pysradb_downloads 953.1 MB\\n\",\n      \"SRR5227309    SRP098789       SRX2536424                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227309.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227309/SRR5227309.sra /data/github/pysradb/notebooks/pysradb_downloads 586.8 MB\\n\",\n      \"SRR5227310    SRP098789       SRX2536425                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227310.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227310/SRR5227310.sra /data/github/pysradb/notebooks/pysradb_downloads 965.6 MB\\n\",\n      \"SRR5227311    SRP098789       SRX2536426                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227311.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227311/SRR5227311.sra /data/github/pysradb/notebooks/pysradb_downloads 926.0 MB\\n\",\n      \"SRR5227312    SRP098789       SRX2536427                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227312.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227312/SRR5227312.sra /data/github/pysradb/notebooks/pysradb_downloads 846.2 MB\\n\",\n      \"SRR5227313    SRP098789       SRX2536428                      https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos5/sra-pub-zq-14/SRR005/227/SRR5227313.sralite.1 ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRR522/SRR5227313/SRR5227313.sra /data/github/pysradb/notebooks/pysradb_downloads   1.0 GB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Total size: 16.2 GB\\n\",\n      \"\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|██████████| 5/5 [06:17<00:00, 75.54s/it]]\\n\",\n      \"100%|██████████| 21/21 [25:17<00:00, 72.24s/it]\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/plain\": [\n       \"[None, None]\"\n      ]\n     },\n     \"execution_count\": 8,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"Parallel(n_jobs=2)(delayed(single_download)(df_x) for df_x in [df1, df2])\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"colab\": {\n   \"authorship_tag\": \"ABX9TyOIauJMa4a4uEZlHJpusR+k\",\n   \"collapsed_sections\": [],\n   \"include_colab_link\": true,\n   \"name\": \"03.ParallelDownload.ipynb\",\n   \"provenance\": []\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.12.11\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/04.SRA_to_fastq_conda.ipynb",
    "content": "{\n \"nbformat\": 4,\n \"nbformat_minor\": 0,\n \"metadata\": {\n  \"colab\": {\n   \"name\": \"04.SRA-to-fastq-conda.ipynb\",\n   \"provenance\": [],\n   \"collapsed_sections\": [],\n   \"authorship_tag\": \"ABX9TyM0msA7wrU4z6plJCRVwnkf\",\n   \"include_colab_link\": true\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  }\n },\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/04.SRA_to_fastq_conda.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Converting SRA to FASTQ using Conda\\n\",\n    \"\\n\",\n    \"This notebook demonstrates how to convert SRA files to FASTQ format using conda and parallel-fastq-dump.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"iP2m8GEdate2\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Install Conda\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"CSbjMUkfZYgB\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"a9953581-3914-4d73-c5a3-4d6a9090c38b\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    }\n   },\n   \"source\": [\n    \"!wget -c https://repo.continuum.io/archive/Anaconda3-5.1.0-Linux-x86_64.sh\\n\",\n    \"!chmod +x Anaconda3-5.1.0-Linux-x86_64.sh\\n\",\n    \"!bash ./Anaconda3-5.1.0-Linux-x86_64.sh -b -f -p /usr/local\\n\",\n    \"\\n\",\n    \"import sys\\n\",\n    \"\\n\",\n    \"sys.path.append(\\\"/usr/local/lib/python3.6/site-packages/\\\")\\n\",\n    \"\\n\",\n    \"!conda config --add channels defaults\\n\",\n    \"!conda config --add channels bioconda\\n\",\n    \"!conda config --add channels conda-forge\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"--2020-02-13 07:19:36--  https://repo.continuum.io/archive/Anaconda3-5.1.0-Linux-x86_64.sh\\n\",\n      \"Resolving repo.continuum.io (repo.continuum.io)... 104.18.201.79, 104.18.200.79, 2606:4700::6812:c94f, ...\\n\",\n      \"Connecting to repo.continuum.io (repo.continuum.io)|104.18.201.79|:443... connected.\\n\",\n      \"HTTP request sent, awaiting response... 200 OK\\n\",\n      \"Length: 577996269 (551M) [application/x-sh]\\n\",\n      \"Saving to: ‘Anaconda3-5.1.0-Linux-x86_64.sh’\\n\",\n      \"\\n\",\n      \"Anaconda3-5.1.0-Lin 100%[===================>] 551.22M   131MB/s    in 4.3s    \\n\",\n      \"\\n\",\n      \"2020-02-13 07:19:46 (127 MB/s) - ‘Anaconda3-5.1.0-Linux-x86_64.sh’ saved [577996269/577996269]\\n\",\n      \"\\n\",\n      \"PREFIX=/usr/local\\n\",\n      \"installing: python-3.6.4-hc3d631a_1 ...\\n\",\n      \"Python 3.6.4 :: Anaconda, Inc.\\n\",\n      \"installing: ca-certificates-2017.08.26-h1d4fec5_0 ...\\n\",\n      \"installing: conda-env-2.6.0-h36134e3_1 ...\\n\",\n      \"installing: intel-openmp-2018.0.0-hc7b2577_8 ...\\n\",\n      \"installing: libgcc-ng-7.2.0-h7cc24e2_2 ...\\n\",\n      \"installing: libgfortran-ng-7.2.0-h9f7466a_2 ...\\n\",\n      \"installing: libstdcxx-ng-7.2.0-h7a57d05_2 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...\\n\",\n      \"installing: sqlalchemy-1.2.1-py36h14c3975_0 ...\\n\",\n      \"installing: tblib-1.3.2-py36h34cf8b6_0 ...\\n\",\n      \"installing: testpath-0.3.1-py36h8cadb63_0 ...\\n\",\n      \"installing: toolz-0.9.0-py36_0 ...\\n\",\n      \"installing: tornado-4.5.3-py36_0 ...\\n\",\n      \"installing: typing-3.6.2-py36h7da032a_0 ...\\n\",\n      \"installing: unicodecsv-0.14.1-py36ha668878_0 ...\\n\",\n      \"installing: wcwidth-0.1.7-py36hdf4376a_0 ...\\n\",\n      \"installing: webencodings-0.5.1-py36h800622e_1 ...\\n\",\n      \"installing: werkzeug-0.14.1-py36_0 ...\\n\",\n      \"installing: wrapt-1.10.11-py36h28b7045_0 ...\\n\",\n      \"installing: xlrd-1.1.0-py36h1db9f0c_1 ...\\n\",\n      \"installing: xlsxwriter-1.0.2-py36h3de1aca_0 ...\\n\",\n      \"installing: xlwt-1.3.0-py36h7b00a1f_0 ...\\n\",\n      \"installing: babel-2.5.3-py36_0 ...\\n\",\n      \"installing: backports.shutil_get_terminal_size-1.0.0-py36hfea85ff_2 ...\\n\",\n      \"installing: bottleneck-1.2.1-py36haac1ea0_0 ...\\n\",\n      \"installing: cffi-1.11.4-py36h9745a5d_0 ...\\n\",\n      \"installing: conda-verify-2.0.0-py36h98955d8_0 ...\\n\",\n      \"installing: cycler-0.10.0-py36h93f1223_0 ...\\n\",\n      \"installing: cytoolz-0.9.0-py36h14c3975_0 ...\\n\",\n      \"installing: h5py-2.7.1-py36h3585f63_0 ...\\n\",\n      \"installing: harfbuzz-1.7.4-hc5b324e_0 ...\\n\",\n      \"installing: html5lib-1.0.1-py36h2f9c1c0_0 ...\\n\",\n      \"installing: jedi-0.11.1-py36_0 ...\\n\",\n      \"installing: networkx-2.1-py36_0 ...\\n\",\n      \"installing: nltk-3.2.5-py36h7532b22_0 ...\\n\",\n      \"installing: numba-0.36.2-np114py36hc6662d5_0 ...\\n\",\n      \"installing: numexpr-2.6.4-py36hc4a3f9a_0 ...\\n\",\n      \"installing: openpyxl-2.4.10-py36_0 ...\\n\",\n      \"installing: packaging-16.8-py36ha668100_1 ...\\n\",\n      \"installing: partd-0.3.8-py36h36fd896_0 ...\\n\",\n      \"installing: pathlib2-2.3.0-py36h49efa8e_0 ...\\n\",\n      \"installing: pexpect-4.3.1-py36_0 ...\\n\",\n      \"installing: pillow-5.0.0-py36h3deb7b8_0 ...\\n\",\n      \"installing: pyqt-5.6.0-py36h0386399_5 ...\\n\",\n      \"installing: python-dateutil-2.6.1-py36h88d3b88_1 ...\\n\",\n      \"installing: pywavelets-0.5.2-py36he602eb0_0 ...\\n\",\n      \"installing: qtawesome-0.4.4-py36h609ed8c_0 ...\\n\",\n      \"installing: scipy-1.0.0-py36hbf646e7_0 ...\\n\",\n      \"installing: setuptools-38.4.0-py36_0 ...\\n\",\n      \"installing: singledispatch-3.4.0.3-py36h7a266c3_0 ...\\n\",\n      \"installing: sortedcollections-0.5.3-py36h3c761f9_0 ...\\n\",\n      \"installing: sphinxcontrib-websupport-1.0.1-py36hb5cb234_1 ...\\n\",\n      \"installing: sympy-1.1.1-py36hc6d1c1c_0 ...\\n\",\n      \"installing: terminado-0.8.1-py36_1 ...\\n\",\n      \"installing: traitlets-4.3.2-py36h674d592_0 ...\\n\",\n      \"installing: zict-0.1.3-py36h3a3bf81_0 ...\\n\",\n      \"installing: astroid-1.6.1-py36_0 ...\\n\",\n      \"installing: bleach-2.1.2-py36_0 ...\\n\",\n      \"installing: clyent-1.2.2-py36h7e57e65_1 ...\\n\",\n      \"installing: cryptography-2.1.4-py36hd09be54_0 ...\\n\",\n      \"installing: cython-0.27.3-py36h1860423_0 ...\\n\",\n      \"installing: datashape-0.5.4-py36h3ad6b5c_0 ...\\n\",\n      \"installing: distributed-1.20.2-py36_0 ...\\n\",\n      \"installing: get_terminal_size-1.0.0-haa9412d_0 ...\\n\",\n      \"installing: gevent-1.2.2-py36h2fe25dc_0 ...\\n\",\n      \"installing: imageio-2.2.0-py36he555465_0 ...\\n\",\n      \"installing: isort-4.2.15-py36had401c0_0 ...\\n\",\n      \"installing: jinja2-2.10-py36ha16c418_0 ...\\n\",\n      \"installing: jsonschema-2.6.0-py36h006f8b5_0 ...\\n\",\n      \"installing: jupyter_core-4.4.0-py36h7c827e3_0 ...\\n\",\n      \"installing: matplotlib-2.1.2-py36h0e671d2_0 ...\\n\",\n      \"installing: navigator-updater-0.1.0-py36h14770f7_0 ...\\n\",\n      \"installing: nose-1.3.7-py36hcdf7029_2 ...\\n\",\n      \"installing: pandas-0.22.0-py36hf484d3e_0 ...\\n\",\n      \"installing: pango-1.41.0-hd475d92_0 ...\\n\",\n      \"installing: patsy-0.5.0-py36_0 ...\\n\",\n      \"installing: pyflakes-1.6.0-py36h7bd6a15_0 ...\\n\",\n      \"installing: pygments-2.2.0-py36h0d3125c_0 ...\\n\",\n      \"installing: pytables-3.4.2-py36h3b5282a_2 ...\\n\",\n      \"installing: pytest-3.3.2-py36_0 ...\\n\",\n      \"installing: scikit-learn-0.19.1-py36h7aa7ec6_0 ...\\n\",\n      \"installing: wheel-0.30.0-py36hfd4bba0_1 ...\\n\",\n      \"installing: astropy-2.0.3-py36h14c3975_0 ...\\n\",\n      \"installing: bkcharts-0.2-py36h735825a_0 ...\\n\",\n      \"installing: bokeh-0.12.13-py36h2f9c1c0_0 ...\\n\",\n      \"installing: flask-0.12.2-py36hb24657c_0 ...\\n\",\n      \"installing: jupyter_client-5.2.2-py36_0 ...\\n\",\n      \"installing: nbformat-4.4.0-py36h31c9010_0 ...\\n\",\n      \"installing: pip-9.0.1-py36h6c6f9ce_4 ...\\n\",\n      \"installing: prompt_toolkit-1.0.15-py36h17d85b1_0 ...\\n\",\n      \"installing: pylint-1.8.2-py36_0 ...\\n\",\n      \"installing: pyopenssl-17.5.0-py36h20ba746_0 ...\\n\",\n      \"installing: statsmodels-0.8.0-py36h8533d0b_0 ...\\n\",\n      \"installing: dask-0.16.1-py36_0 ...\\n\",\n      \"installing: flask-cors-3.0.3-py36h2d857d3_0 ...\\n\",\n      \"installing: ipython-6.2.1-py36h88c514a_1 ...\\n\",\n      \"installing: nbconvert-5.3.1-py36hb41ffb7_0 ...\\n\",\n      \"installing: seaborn-0.8.1-py36hfad7ec4_0 ...\\n\",\n      \"installing: urllib3-1.22-py36hbe7ace6_0 ...\\n\",\n      \"installing: ipykernel-4.8.0-py36_0 ...\\n\",\n      \"installing: odo-0.5.1-py36h90ed295_0 ...\\n\",\n      \"installing: requests-2.18.4-py36he2e5f8d_1 ...\\n\",\n      \"installing: scikit-image-0.13.1-py36h14c3975_1 ...\\n\",\n      \"installing: anaconda-client-1.6.9-py36_0 ...\\n\",\n      \"installing: blaze-0.11.3-py36h4e06776_0 ...\\n\",\n      \"installing: jupyter_console-5.2.0-py36he59e554_1 ...\\n\",\n      \"installing: notebook-5.4.0-py36_0 ...\\n\",\n      \"installing: qtconsole-4.3.1-py36h8f73b5b_0 ...\\n\",\n      \"installing: sphinx-1.6.6-py36_0 ...\\n\",\n      \"installing: anaconda-project-0.8.2-py36h44fb852_0 ...\\n\",\n      \"installing: jupyterlab_launcher-0.10.2-py36_0 ...\\n\",\n      \"installing: numpydoc-0.7.0-py36h18f165f_0 ...\\n\",\n      \"installing: widgetsnbextension-3.1.0-py36_0 ...\\n\",\n      \"installing: anaconda-navigator-1.7.0-py36_0 ...\\n\",\n      \"installing: ipywidgets-7.1.1-py36_0 ...\\n\",\n      \"installing: jupyterlab-0.31.5-py36_0 ...\\n\",\n      \"installing: spyder-3.2.6-py36_0 ...\\n\",\n      \"installing: _ipyw_jlab_nb_ext_conf-0.1.0-py36he11e457_0 ...\\n\",\n      \"installing: jupyter-1.0.0-py36_4 ...\\n\",\n      \"installing: anaconda-5.1.0-py36_2 ...\\n\",\n      \"installing: conda-4.4.10-py36_0 ...\\n\",\n      \"installing: conda-build-3.4.1-py36_0 ...\\n\",\n      \"installation finished.\\n\",\n      \"WARNING:\\n\",\n      \"    You currently have a PYTHONPATH environment variable set. This may cause\\n\",\n      \"    unexpected behavior when running the Python interpreter in Anaconda3.\\n\",\n      \"    For best results, please verify that your PYTHONPATH only points to\\n\",\n      \"    directories of packages that are compatible with the Python interpreter\\n\",\n      \"    in Anaconda3: /usr/local\\n\",\n      \"Warning: 'defaults' already in 'channels' list, moving to the top\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"4XlnJIgobDIH\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Install parallel-fastq-dump\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"XYc6vNwya_2I\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"b96f8eef-8d05-45f0-a452-814296b6fc56\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    }\n   },\n   \"source\": [\n    \"!conda install -y parallel-fastq-dump\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Solving environment: - \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\bdone\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"==> WARNING: A newer version of conda exists. <==\\n\",\n      \"  current version: 4.4.10\\n\",\n      \"  latest version: 4.8.2\\n\",\n      \"\\n\",\n      \"Please update conda by running\\n\",\n      \"\\n\",\n      \"    $ conda update -n base conda\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"## Package Plan ##\\n\",\n      \"\\n\",\n      \"  environment location: /usr/local\\n\",\n      \"\\n\",\n      \"  added / updated specs: \\n\",\n      \"    - parallel-fastq-dump\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"The following packages will be downloaded:\\n\",\n      \"\\n\",\n      \"    package                    |            build\\n\",\n      \"    ---------------------------|-----------------\\n\",\n      \"    bzip2-1.0.8                |       h516909a_2         396 KB  conda-forge\\n\",\n      \"    parallel-fastq-dump-0.6.6  |             py_0           8 KB  bioconda\\n\",\n      \"    python-3.7.1               |       h5001a0f_0        26.8 MB  conda-forge\\n\",\n      \"    ca-certificates-2019.11.28 |       hecc5488_0         145 KB  conda-forge\\n\",\n      \"    _libgcc_mutex-0.1          |      conda_forge           3 KB  conda-forge\\n\",\n      \"    libgcc-ng-9.2.0            |       h24d8f2e_2         8.2 MB  conda-forge\\n\",\n      \"    sqlite-3.28.0              |       h8b20d00_0         1.9 MB  conda-forge\\n\",\n      \"    sra-tools-2.9.1_1          |       h470a237_0        38.0 MB  bioconda\\n\",\n      \"    libgomp-9.2.0              |       h24d8f2e_2         816 KB  conda-forge\\n\",\n      \"    certifi-2019.11.28         |           py37_0         148 KB  conda-forge\\n\",\n      \"    ncurses-6.1                |       hfc679d8_2         1.3 MB  conda-forge\\n\",\n      \"    pip-20.0.2                 |             py_2         1.0 MB  conda-forge\\n\",\n      \"    readline-7.0               |    hf8c457e_1001         391 KB  conda-forge\\n\",\n      \"    xz-5.2.4                   |    h14c3975_1001         366 KB  conda-forge\\n\",\n      \"    libffi-3.2.1               |       hfc679d8_5          51 KB  conda-forge\\n\",\n      \"    zlib-1.2.11                |    h516909a_1006         105 KB  conda-forge\\n\",\n      \"    openssl-1.0.2u             |       h516909a_0         3.2 MB  conda-forge\\n\",\n      \"    tk-8.6.10                  |       hed695b0_0         3.2 MB  conda-forge\\n\",\n      \"    setuptools-45.2.0          |           py37_0         654 KB  conda-forge\\n\",\n      \"    _openmp_mutex-4.5          |            0_gnu         435 KB  conda-forge\\n\",\n      \"    wheel-0.34.2               |             py_1          24 KB  conda-forge\\n\",\n      \"    ------------------------------------------------------------\\n\",\n      \"                                           Total:        87.1 MB\\n\",\n      \"\\n\",\n      \"The following NEW packages will be INSTALLED:\\n\",\n      \"\\n\",\n      \"    _libgcc_mutex:       0.1-conda_forge       conda-forge\\n\",\n      \"    _openmp_mutex:       4.5-0_gnu             conda-forge\\n\",\n      \"    libgomp:             9.2.0-h24d8f2e_2      conda-forge\\n\",\n      \"    parallel-fastq-dump: 0.6.6-py_0            bioconda   \\n\",\n      \"    sra-tools:           2.9.1_1-h470a237_0    bioconda   \\n\",\n      \"\\n\",\n      \"The following packages will be UPDATED:\\n\",\n      \"\\n\",\n      \"    bzip2:               1.0.6-h9a117a8_4                  --> 1.0.8-h516909a_2      conda-forge\\n\",\n      \"    ca-certificates:     2017.08.26-h1d4fec5_0             --> 2019.11.28-hecc5488_0 conda-forge\\n\",\n      \"    certifi:             2018.1.18-py36_0                  --> 2019.11.28-py37_0     conda-forge\\n\",\n      \"    libffi:              3.2.1-hd88cf55_4                  --> 3.2.1-hfc679d8_5      conda-forge\\n\",\n      \"    libgcc-ng:           7.2.0-h7cc24e2_2                  --> 9.2.0-h24d8f2e_2      conda-forge\\n\",\n      \"    ncurses:             6.0-h9df7e31_2                    --> 6.1-hfc679d8_2        conda-forge\\n\",\n      \"    openssl:             1.0.2n-hb7f436b_0                 --> 1.0.2u-h516909a_0     conda-forge\\n\",\n      \"    pip:                 9.0.1-py36h6c6f9ce_4              --> 20.0.2-py_2           conda-forge\\n\",\n      \"    python:              3.6.4-hc3d631a_1                  --> 3.7.1-h5001a0f_0      conda-forge\\n\",\n      \"    readline:            7.0-ha6073c6_4                    --> 7.0-hf8c457e_1001     conda-forge\\n\",\n      \"    setuptools:          38.4.0-py36_0                     --> 45.2.0-py37_0         conda-forge\\n\",\n      \"    sqlite:              3.22.0-h1bed415_0                 --> 3.28.0-h8b20d00_0     conda-forge\\n\",\n      \"    tk:                  8.6.7-hc745277_3                  --> 8.6.10-hed695b0_0     conda-forge\\n\",\n      \"    wheel:               0.30.0-py36hfd4bba0_1             --> 0.34.2-py_1           conda-forge\\n\",\n      \"    xz:                  5.2.3-h55aa19d_2                  --> 5.2.4-h14c3975_1001   conda-forge\\n\",\n      \"    zlib:                1.2.11-ha838bed_2                 --> 1.2.11-h516909a_1006  conda-forge\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Downloading and Extracting Packages\\n\",\n      \"bzip2 1.0.8: 100% 1.0/1 [00:00<00:00,  4.95it/s] \\n\",\n      \"parallel-fastq-dump 0.6.6: 100% 1.0/1 [00:00<00:00, 25.61it/s]\\n\",\n      \"python 3.7.1: 100% 1.0/1 [00:08<00:00,  8.74s/it]              \\n\",\n      \"ca-certificates 2019.11.28: 100% 1.0/1 [00:00<00:00, 12.07it/s]\\n\",\n      \"_libgcc_mutex 0.1: 100% 1.0/1 [00:00<00:00, 22.60it/s]\\n\",\n      \"libgcc-ng 9.2.0: 100% 1.0/1 [00:02<00:00,  2.84s/it]               \\n\",\n      \"sqlite 3.28.0: 100% 1.0/1 [00:00<00:00,  1.35it/s]               \\n\",\n      \"sra-tools 2.9.1_1: 100% 1.0/1 [00:13<00:00, 30.18s/it]               \\n\",\n      \"libgomp 9.2.0: 100% 1.0/1 [00:00<00:00,  3.97it/s]               \\n\",\n      \"certifi 2019.11.28: 100% 1.0/1 [00:00<00:00, 11.58it/s]\\n\",\n      \"ncurses 6.1: 100% 1.0/1 [00:01<00:00,  1.22s/it]               \\n\",\n      \"pip 20.0.2: 100% 1.0/1 [00:00<00:00,  1.83it/s]               \\n\",\n      \"readline 7.0: 100% 1.0/1 [00:00<00:00,  4.98it/s] \\n\",\n      \"xz 5.2.4: 100% 1.0/1 [00:00<00:00,  5.48it/s]               \\n\",\n      \"libffi 3.2.1: 100% 1.0/1 [00:00<00:00, 16.06it/s]\\n\",\n      \"zlib 1.2.11: 100% 1.0/1 [00:00<00:00, 14.34it/s]\\n\",\n      \"openssl 1.0.2u: 100% 1.0/1 [00:01<00:00,  2.86s/it]               \\n\",\n      \"tk 8.6.10: 100% 1.0/1 [00:01<00:00,  1.28s/it]              \\n\",\n      \"setuptools 45.2.0: 100% 1.0/1 [00:00<00:00,  2.78it/s]               \\n\",\n      \"_openmp_mutex 4.5: 100% 1.0/1 [00:00<00:00,  7.34it/s]               \\n\",\n      \"wheel 0.34.2: 100% 1.0/1 [00:00<00:00, 21.98it/s]\\n\",\n      \"Preparing transaction: / \\b\\b- \\b\\b\\\\ \\b\\bdone\\n\",\n      \"Verifying transaction: 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\\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\b/ \\b\\b- \\b\\b\\\\ \\b\\b| \\b\\bdone\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"Ch5Ir5IQay4Q\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Install latest pysradb\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"45_Z9nJPa0q4\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"d9578939-0b66-4333-92fa-7a5ec4e8329e\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 684\n    }\n   },\n   \"source\": [\n    \"pip install git+https://github.com/saketkc/pysradb\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Collecting git+https://github.com/saketkc/pysradb\\n\",\n      \"  Cloning https://github.com/saketkc/pysradb to /tmp/pip-req-build-bd1zhhoz\\n\",\n      \"  Running command git clone -q https://github.com/saketkc/pysradb /tmp/pip-req-build-bd1zhhoz\\n\",\n      \"Collecting pandas==0.25.3\\n\",\n      \"  Using cached pandas-0.25.3-cp37-cp37m-manylinux1_x86_64.whl (10.4 MB)\\n\",\n      \"Collecting tqdm==4.41.1\\n\",\n      \"  Using cached tqdm-4.41.1-py2.py3-none-any.whl (56 kB)\\n\",\n      \"Collecting requests==2.22.0\\n\",\n      \"  Using cached requests-2.22.0-py2.py3-none-any.whl (57 kB)\\n\",\n      \"Collecting xmltodict==0.12.0\\n\",\n      \"  Using cached xmltodict-0.12.0-py2.py3-none-any.whl (9.2 kB)\\n\",\n      \"Collecting python-dateutil>=2.6.1\\n\",\n      \"  Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)\\n\",\n      \"Collecting numpy>=1.13.3\\n\",\n      \"  Using cached numpy-1.18.1-cp37-cp37m-manylinux1_x86_64.whl (20.1 MB)\\n\",\n      \"Collecting pytz>=2017.2\\n\",\n      \"  Using cached pytz-2019.3-py2.py3-none-any.whl (509 kB)\\n\",\n      \"Collecting idna<2.9,>=2.5\\n\",\n      \"  Using cached idna-2.8-py2.py3-none-any.whl (58 kB)\\n\",\n      \"Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1\\n\",\n      \"  Using cached urllib3-1.25.8-py2.py3-none-any.whl (125 kB)\\n\",\n      \"Collecting chardet<3.1.0,>=3.0.2\\n\",\n      \"  Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB)\\n\",\n      \"Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.7/site-packages (from requests==2.22.0->pysradb==0.10.3.dev0) (2019.11.28)\\n\",\n      \"Collecting six>=1.5\\n\",\n      \"  Using cached six-1.14.0-py2.py3-none-any.whl (10 kB)\\n\",\n      \"Building wheels for collected packages: pysradb\\n\",\n      \"  Building wheel for pysradb (setup.py) ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"  Created wheel for pysradb: filename=pysradb-0.10.3.dev0-py3-none-any.whl size=147407 sha256=b498f377cda436cca6ee34c470c8aabcbe9a75f5fe8af7a5e6c56796c1be9041\\n\",\n      \"  Stored in directory: /tmp/pip-ephem-wheel-cache-a6fjccpo/wheels/3f/06/98/98805e85e0909f2d0920ce73557c06d3802e4baaa2616920e8\\n\",\n      \"Successfully built pysradb\\n\",\n      \"Installing collected packages: six, python-dateutil, numpy, pytz, pandas, tqdm, idna, urllib3, chardet, requests, xmltodict, pysradb\\n\",\n      \"Successfully installed chardet-3.0.4 idna-2.8 numpy-1.18.1 pandas-0.25.3 pysradb-0.10.3.dev0 python-dateutil-2.8.1 pytz-2019.3 requests-2.22.0 six-1.14.0 tqdm-4.41.1 urllib3-1.25.8 xmltodict-0.12.0\\n\"\n     ],\n     \"name\": \"stdout\"\n    },\n    {\n     \"output_type\": \"display_data\",\n     \"data\": {\n      \"application/vnd.colab-display-data+json\": {\n       \"pip_warning\": {\n        \"packages\": [\n         \"chardet\",\n         \"idna\",\n         \"pandas\"\n        ]\n       }\n      }\n     },\n     \"metadata\": {\n      \"tags\": []\n     }\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"IPNGntg4bOGI\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Get metadata\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"jGAxadtxbPoM\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"dd123c11-bf3e-45a1-e260-b569ab72960c\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 71\n    }\n   },\n   \"source\": [\n    \"!pysradb metadata --detailed \\tSRP063852\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"study_accession experiment_accession experiment_title                                         experiment_desc                                          organism_taxid  organism_name library_strategy library_source  library_selection   sample_accession sample_title instrument           total_spots total_size run_accession run_total_spots run_total_bases run_alias      sra_url                                                                                 experiment_alias source_name cell line\\n\",\n      \"SRP063852       SRX1254413           GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq  GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq  9606            Homo sapiens  miRNA-Seq        TRANSCRIPTOMIC  size fractionation  SRS1072728       N/A          Illumina HiSeq 2000  31967082    626381849  SRR2433794    31967082        916773615       GSM1887643_r1  https://sra-download.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR2433794/SRR2433794.1  GSM1887643       HEK293      HEK293  \\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"7gdqjIpabSpK\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Download data\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"aZOe5BSrbU3H\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"ce236993-6074-4986-9555-cf66818abc0e\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 1000\n    }\n   },\n   \"source\": [\n    \"!pysradb download -y -p SRP063852\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"The following files will be downloaded: \\n\",\n      \"\\n\",\n      \"study_accession experiment_accession experiment_title                                         experiment_desc                                          organism_taxid  organism_name library_strategy library_source  library_selection   sample_accession sample_title instrument           total_spots total_size run_accession run_total_spots run_total_bases run_alias      srapath_url                                                                             experiment_alias source_name cell line download_url\\n\",\n      \" SRP063852       SRX1254413           GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq  GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq  9606            Homo sapiens  miRNA-Seq        TRANSCRIPTOMIC  size fractionation  SRS1072728       N/A          Illumina HiSeq 2000  31967082    626381849  SRR2433794    31967082        916773615       GSM1887643_r1  https://sra-download.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR2433794/SRR2433794.1  GSM1887643       HEK293      HEK293               \\n\",\n      \"\\n\",\n      \"\\n\",\n      \"Total size: 626.4 MB\\n\",\n      \"\\n\",\n      \"\\n\",\n      \"SRP063852/SRX1254413/SRR2433794:   0% 0/1 [00:00<?, ?it/s]\\n\",\n      \"Downloading SRR2433794.1:   0% 0.00/626M [00:00<?, ?B/s]\\u001b[A\\n\",\n      \"Downloading SRR2433794.1:   0% 1.05M/626M [00:00<01:04, 9.72MB/s]\\u001b[A\\n\",\n      \"Downloading SRR2433794.1:   3% 21.0M/626M [00:00<00:45, 13.3MB/s]\\u001b[A\\n\",\n      \"Downloading SRR2433794.1:   6% 35.7M/626M [00:00<00:32, 18.2MB/s]\\u001b[A\\n\",\n      \"Downloading SRR2433794.1:   7% 43.0M/626M [00:00<00:25, 23.3MB/s]\\u001b[A\\n\",\n  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\"code\",\n    \"outputId\": \"0d5de7ef-ed6d-4078-df0c-2647854661ac\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 51\n    }\n   },\n   \"source\": [\n    \"!ls -ltrh pysradb_downloads\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"total 4.0K\\n\",\n      \"drwxr-xr-x 3 root root 4.0K Feb 13 07:28 SRP063852\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"9VgVtnj6bh-s\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"1d00ea7c-2998-49f5-c867-26af8c573bad\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 51\n    }\n   },\n   \"source\": [\n    \"!ls -ltrh pysradb_downloads/SRP063852/SRX1254413\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"total 598M\\n\",\n      \"-rw-r--r-- 1 root root 598M Feb 13 07:28 SRR2433794.sra\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"YWNr_p7ZeBAI\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## SRA to fastq\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"Oc4MlzMtd8fd\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"b3951d67-bf18-45e3-e036-c62703bc3c41\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 306\n    }\n   },\n   \"source\": [\n    \"!mkdir -p sratofastq && mkdir -p tmpdir && parallel-fastq-dump --threads 4 --outdir sratofastq/ --split-files --tmpdir tmpdir --gzip -s pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"SRR ids: ['pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra']\\n\",\n      \"extra args: ['--split-files', '--gzip']\\n\",\n      \"tempdir: tmpdir/pfd_wgclvuwy\\n\",\n      \"pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra spots: 31967082\\n\",\n      \"blocks: [[1, 7991770], [7991771, 15983540], [15983541, 23975310], [23975311, 31967082]]\\n\",\n      \"Rejected 7991770 READS because READLEN < 1\\n\",\n      \"Read 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Written 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Rejected 7991772 READS because READLEN < 1\\n\",\n      \"Read 7991772 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Written 7991772 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Rejected 7991770 READS because READLEN < 1\\n\",\n      \"Read 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Written 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Rejected 7991770 READS because READLEN < 1\\n\",\n      \"Read 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\",\n      \"Written 7991770 spots for pysradb_downloads/SRP063852/SRX1254413/SRR2433794.sra\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"ASGIodxNeOgS\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"4a770629-68f0-4a71-cc16-a934170f8694\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 34\n    }\n   },\n   \"source\": [\n    \"!ls -ltrh sratofastq\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"ls: cannot access 'sratofastq': No such file or directory\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  }\n ]\n}"
  },
  {
    "path": "notebooks/05.Downloading_subsets_of_a_project.ipynb",
    "content": "{\n \"nbformat\": 4,\n \"nbformat_minor\": 0,\n \"metadata\": {\n  \"colab\": {\n   \"name\": \"05.Downloading subsets of a project.ipynb\",\n   \"provenance\": [],\n   \"collapsed_sections\": [],\n   \"authorship_tag\": \"ABX9TyMwGm36+9vVPTY3ariKzrRm\",\n   \"include_colab_link\": true\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  }\n },\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/05.Downloading_subsets_of_a_project.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Downloading Subsets of a Project\\n\",\n    \"\\n\",\n    \"This notebook shows how to filter and download specific samples from a larger SRA project.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"ZimlPnZwF3JP\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"25bca786-e5e1-4980-f304-8493b06c3481\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 683\n    }\n   },\n   \"source\": [\n    \"pip install git+https://github.com/saketkc/pysradb.git\"\n   ],\n   \"execution_count\": 1,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Collecting git+https://github.com/saketkc/pysradb.git\\n\",\n      \"  Cloning https://github.com/saketkc/pysradb.git to /tmp/pip-req-build-3dlg9hp3\\n\",\n      \"  Running command git clone -q https://github.com/saketkc/pysradb.git /tmp/pip-req-build-3dlg9hp3\\n\",\n      \"Requirement already satisfied: pandas==0.25.3 in /usr/local/lib/python3.6/dist-packages (from pysradb==0.10.3.dev0) (0.25.3)\\n\",\n      \"Collecting tqdm==4.41.1\\n\",\n      \"  Using cached https://files.pythonhosted.org/packages/72/c9/7fc20feac72e79032a7c8138fd0d395dc6d8812b5b9edf53c3afd0b31017/tqdm-4.41.1-py2.py3-none-any.whl\\n\",\n      \"Collecting requests==2.22.0\\n\",\n      \"  Using cached https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl\\n\",\n      \"Collecting xmltodict==0.12.0\\n\",\n      \"  Using cached https://files.pythonhosted.org/packages/28/fd/30d5c1d3ac29ce229f6bdc40bbc20b28f716e8b363140c26eff19122d8a5/xmltodict-0.12.0-py2.py3-none-any.whl\\n\",\n      \"Requirement already satisfied: python-dateutil>=2.6.1 in /usr/local/lib/python3.6/dist-packages (from pandas==0.25.3->pysradb==0.10.3.dev0) (2.6.1)\\n\",\n      \"Requirement already satisfied: pytz>=2017.2 in /usr/local/lib/python3.6/dist-packages (from pandas==0.25.3->pysradb==0.10.3.dev0) (2018.9)\\n\",\n      \"Requirement already satisfied: numpy>=1.13.3 in /usr/local/lib/python3.6/dist-packages (from pandas==0.25.3->pysradb==0.10.3.dev0) (1.17.5)\\n\",\n      \"Requirement already satisfied: idna<2.9,>=2.5 in /usr/local/lib/python3.6/dist-packages (from requests==2.22.0->pysradb==0.10.3.dev0) (2.8)\\n\",\n      \"Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /usr/local/lib/python3.6/dist-packages (from requests==2.22.0->pysradb==0.10.3.dev0) (1.24.3)\\n\",\n      \"Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.6/dist-packages (from requests==2.22.0->pysradb==0.10.3.dev0) (2019.11.28)\\n\",\n      \"Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /usr/local/lib/python3.6/dist-packages (from requests==2.22.0->pysradb==0.10.3.dev0) (3.0.4)\\n\",\n      \"Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.6/dist-packages (from python-dateutil>=2.6.1->pandas==0.25.3->pysradb==0.10.3.dev0) (1.12.0)\\n\",\n      \"Building wheels for collected packages: pysradb\\n\",\n      \"  Building wheel for pysradb (setup.py) ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"  Created wheel for pysradb: filename=pysradb-0.10.3.dev0-cp36-none-any.whl size=147411 sha256=6ccd6874b7cde11cb10eae96cb14e86f9cdfe5f1b02b16a3c7eb20879afd6a62\\n\",\n      \"  Stored in directory: /tmp/pip-ephem-wheel-cache-z9xalsuu/wheels/d5/24/42/81dccabc3a4aac9757e23b7175ad7270090a4b3c203cd4fc8f\\n\",\n      \"Successfully built pysradb\\n\",\n      \"\\u001b[31mERROR: google-colab 1.0.0 has requirement requests~=2.21.0, but you'll have requests 2.22.0 which is incompatible.\\u001b[0m\\n\",\n      \"\\u001b[31mERROR: datascience 0.10.6 has requirement folium==0.2.1, but you'll have folium 0.8.3 which is incompatible.\\u001b[0m\\n\",\n      \"Installing collected packages: tqdm, requests, xmltodict, pysradb\\n\",\n      \"  Found existing installation: tqdm 4.28.1\\n\",\n      \"    Uninstalling tqdm-4.28.1:\\n\",\n      \"      Successfully uninstalled tqdm-4.28.1\\n\",\n      \"  Found existing installation: requests 2.21.0\\n\",\n      \"    Uninstalling requests-2.21.0:\\n\",\n      \"      Successfully uninstalled requests-2.21.0\\n\",\n      \"Successfully installed pysradb-0.10.3.dev0 requests-2.22.0 tqdm-4.41.1 xmltodict-0.12.0\\n\"\n     ],\n     \"name\": \"stdout\"\n    },\n    {\n     \"output_type\": \"display_data\",\n     \"data\": {\n      \"application/vnd.colab-display-data+json\": {\n       \"pip_warning\": {\n        \"packages\": [\n         \"requests\",\n         \"tqdm\"\n        ]\n       }\n      }\n     },\n     \"metadata\": {\n      \"tags\": []\n     }\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"Dg62g5OM_qbn\",\n    \"colab_type\": \"code\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 34\n    },\n    \"outputId\": \"295c4af3-0a46-4f70-b695-ab395422edec\"\n   },\n   \"source\": [\n    \"!pysradb --version\"\n   ],\n   \"execution_count\": 2,\n   \"outputs\": [\n    {\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"pysradb 0.10.3-dev0\\n\"\n     ],\n     \"name\": \"stdout\"\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"Vi6ELv2KF_V4\",\n    \"colab_type\": \"code\",\n    \"colab\": {}\n   },\n   \"source\": [\n    \"from pysradb.sraweb import SRAweb\\n\",\n    \"\\n\",\n    \"db = SRAweb()\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": []\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"xLZ431sPKJcX\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Example of a record missing \\\"SAMPLE_ATTRIBUES\\\" \\n\",\n    \"\\n\",\n    \"It also has an \\\"auxillary\\\" contig file: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5146869\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"x5OmbCI-GFcA\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"8f445628-1d50-4845-b918-7a6d9dbe636d\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 966\n    }\n   },\n   \"source\": [\n    \"df = db.sra_metadata(\\\"SRP096127\\\", detailed=True)\\n\",\n    \"df\"\n   ],\n   \"execution_count\": 4,\n   \"outputs\": [\n    {\n     \"output_type\": \"execute_result\",\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>library_source</th>\\n\",\n       \"      <th>library_selection</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>sample_title</th>\\n\",\n       \"      <th>instrument</th>\\n\",\n       \"      <th>total_spots</th>\\n\",\n       \"      <th>total_size</th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>run_total_spots</th>\\n\",\n       \"      <th>run_total_bases</th>\\n\",\n       \"      <th>run_alias</th>\\n\",\n       \"      <th>sra_url_alt</th>\\n\",\n       \"      <th>sra_url</th>\\n\",\n       \"      <th>experiment_alias</th>\\n\",\n       \"      <th>source_name</th>\\n\",\n       \"      <th>cell type</th>\\n\",\n       \"      <th>group</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467007</td>\\n\",\n       \"      <td>GSM2448483: normal.ct-970; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448483: normal.ct-970; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899466</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>559547</td>\\n\",\n       \"      <td>50734487</td>\\n\",\n       \"      <td>SRR5149059</td>\\n\",\n       \"      <td>559547</td>\\n\",\n       \"      <td>83216675</td>\\n\",\n       \"      <td>GSM2448483_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448483</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467006</td>\\n\",\n       \"      <td>GSM2448482: normal.ct-969; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448482: normal.ct-969; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899465</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>441577</td>\\n\",\n       \"      <td>40899268</td>\\n\",\n       \"      <td>SRR5149058</td>\\n\",\n       \"      <td>441577</td>\\n\",\n       \"      <td>65549383</td>\\n\",\n       \"      <td>GSM2448482_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448482</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467005</td>\\n\",\n       \"      <td>GSM2448481: normal.ct-968; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448481: normal.ct-968; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899464</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>563378</td>\\n\",\n       \"      <td>50951134</td>\\n\",\n       \"      <td>SRR5149057</td>\\n\",\n       \"      <td>563378</td>\\n\",\n       \"      <td>83839813</td>\\n\",\n       \"      <td>GSM2448481_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448481</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467004</td>\\n\",\n       \"      <td>GSM2448480: normal.ct-967; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448480: normal.ct-967; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899463</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>422878</td>\\n\",\n       \"      <td>39223860</td>\\n\",\n       \"      <td>SRR5149056</td>\\n\",\n       \"      <td>422878</td>\\n\",\n       \"      <td>62753430</td>\\n\",\n       \"      <td>GSM2448480_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448480</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467003</td>\\n\",\n       \"      <td>GSM2448479: normal.ct-966; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448479: normal.ct-966; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899461</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>517254</td>\\n\",\n       \"      <td>46881651</td>\\n\",\n       \"      <td>SRR5149055</td>\\n\",\n       \"      <td>517254</td>\\n\",\n       \"      <td>77004865</td>\\n\",\n       \"      <td>GSM2448479_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448479</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2186</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464821</td>\\n\",\n       \"      <td>GSM2446284: HCC.ct-5; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446284: HCC.ct-5; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897280</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>1033204</td>\\n\",\n       \"      <td>83576370</td>\\n\",\n       \"      <td>SRR5146873</td>\\n\",\n       \"      <td>1033204</td>\\n\",\n       \"      <td>196635123</td>\\n\",\n       \"      <td>GSM2446284_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446284</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2187</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464820</td>\\n\",\n       \"      <td>GSM2446283: HCC.ct-4; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446283: HCC.ct-4; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897279</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>840853</td>\\n\",\n       \"      <td>68410342</td>\\n\",\n       \"      <td>SRR5146872</td>\\n\",\n       \"      <td>840853</td>\\n\",\n       \"      <td>159822416</td>\\n\",\n       \"      <td>GSM2446283_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446283</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2188</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464819</td>\\n\",\n       \"      <td>GSM2446282: HCC.ct-3; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446282: HCC.ct-3; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897278</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>885724</td>\\n\",\n       \"      <td>71407675</td>\\n\",\n       \"      <td>SRR5146871</td>\\n\",\n       \"      <td>885724</td>\\n\",\n       \"      <td>166270272</td>\\n\",\n       \"      <td>GSM2446282_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446282</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2189</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464818</td>\\n\",\n       \"      <td>GSM2446281: HCC.ct-2; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446281: HCC.ct-2; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897277</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>775684</td>\\n\",\n       \"      <td>62094237</td>\\n\",\n       \"      <td>SRR5146870</td>\\n\",\n       \"      <td>775684</td>\\n\",\n       \"      <td>145671062</td>\\n\",\n       \"      <td>GSM2446281_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446281</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2190</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464817</td>\\n\",\n       \"      <td>GSM2446280: HCC.ct-1; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446280: HCC.ct-1; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897276</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>1124031</td>\\n\",\n       \"      <td>89769302</td>\\n\",\n       \"      <td>SRR5146869</td>\\n\",\n       \"      <td>1124031</td>\\n\",\n       \"      <td>212986785</td>\\n\",\n       \"      <td>GSM2446280_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446280</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>2191 rows × 24 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"     study_accession  ...                             group\\n\",\n       \"0          SRP096127  ...                   healthy control\\n\",\n       \"1          SRP096127  ...                   healthy control\\n\",\n       \"2          SRP096127  ...                   healthy control\\n\",\n       \"3          SRP096127  ...                   healthy control\\n\",\n       \"4          SRP096127  ...                   healthy control\\n\",\n       \"...              ...  ...                               ...\\n\",\n       \"2186       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2187       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2188       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2189       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2190       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"\\n\",\n       \"[2191 rows x 24 columns]\"\n      ]\n     },\n     \"metadata\": {\n      \"tags\": []\n     },\n     \"execution_count\": 4\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"DDyQEQcFQCNW\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"e7b3d325-49a2-4c97-d3c9-16b4de5fea62\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 966\n    }\n   },\n   \"source\": [\n    \"df_contig_subset = df.loc[df[\\\"sra_url_alt\\\"].str.contains(\\\"contig\\\")]\\n\",\n    \"df_contig_subset\"\n   ],\n   \"execution_count\": 5,\n   \"outputs\": [\n    {\n     \"output_type\": \"execute_result\",\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>experiment_desc</th>\\n\",\n       \"      <th>organism_taxid</th>\\n\",\n       \"      <th>organism_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>library_source</th>\\n\",\n       \"      <th>library_selection</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>sample_title</th>\\n\",\n       \"      <th>instrument</th>\\n\",\n       \"      <th>total_spots</th>\\n\",\n       \"      <th>total_size</th>\\n\",\n       \"      <th>run_accession</th>\\n\",\n       \"      <th>run_total_spots</th>\\n\",\n       \"      <th>run_total_bases</th>\\n\",\n       \"      <th>run_alias</th>\\n\",\n       \"      <th>sra_url_alt</th>\\n\",\n       \"      <th>sra_url</th>\\n\",\n       \"      <th>experiment_alias</th>\\n\",\n       \"      <th>source_name</th>\\n\",\n       \"      <th>cell type</th>\\n\",\n       \"      <th>group</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467007</td>\\n\",\n       \"      <td>GSM2448483: normal.ct-970; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448483: normal.ct-970; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899466</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>559547</td>\\n\",\n       \"      <td>50734487</td>\\n\",\n       \"      <td>SRR5149059</td>\\n\",\n       \"      <td>559547</td>\\n\",\n       \"      <td>83216675</td>\\n\",\n       \"      <td>GSM2448483_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448483</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467006</td>\\n\",\n       \"      <td>GSM2448482: normal.ct-969; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448482: normal.ct-969; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899465</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>441577</td>\\n\",\n       \"      <td>40899268</td>\\n\",\n       \"      <td>SRR5149058</td>\\n\",\n       \"      <td>441577</td>\\n\",\n       \"      <td>65549383</td>\\n\",\n       \"      <td>GSM2448482_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448482</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467005</td>\\n\",\n       \"      <td>GSM2448481: normal.ct-968; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448481: normal.ct-968; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899464</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>563378</td>\\n\",\n       \"      <td>50951134</td>\\n\",\n       \"      <td>SRR5149057</td>\\n\",\n       \"      <td>563378</td>\\n\",\n       \"      <td>83839813</td>\\n\",\n       \"      <td>GSM2448481_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448481</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467004</td>\\n\",\n       \"      <td>GSM2448480: normal.ct-967; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448480: normal.ct-967; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899463</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>422878</td>\\n\",\n       \"      <td>39223860</td>\\n\",\n       \"      <td>SRR5149056</td>\\n\",\n       \"      <td>422878</td>\\n\",\n       \"      <td>62753430</td>\\n\",\n       \"      <td>GSM2448480_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448480</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2467003</td>\\n\",\n       \"      <td>GSM2448479: normal.ct-966; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>GSM2448479: normal.ct-966; Homo sapiens; Bisul...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1899461</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>517254</td>\\n\",\n       \"      <td>46881651</td>\\n\",\n       \"      <td>SRR5149055</td>\\n\",\n       \"      <td>517254</td>\\n\",\n       \"      <td>77004865</td>\\n\",\n       \"      <td>GSM2448479_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2448479</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>healthy control</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2186</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464821</td>\\n\",\n       \"      <td>GSM2446284: HCC.ct-5; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446284: HCC.ct-5; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897280</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>1033204</td>\\n\",\n       \"      <td>83576370</td>\\n\",\n       \"      <td>SRR5146873</td>\\n\",\n       \"      <td>1033204</td>\\n\",\n       \"      <td>196635123</td>\\n\",\n       \"      <td>GSM2446284_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446284</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2187</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464820</td>\\n\",\n       \"      <td>GSM2446283: HCC.ct-4; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446283: HCC.ct-4; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897279</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>840853</td>\\n\",\n       \"      <td>68410342</td>\\n\",\n       \"      <td>SRR5146872</td>\\n\",\n       \"      <td>840853</td>\\n\",\n       \"      <td>159822416</td>\\n\",\n       \"      <td>GSM2446283_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446283</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2188</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464819</td>\\n\",\n       \"      <td>GSM2446282: HCC.ct-3; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446282: HCC.ct-3; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897278</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>885724</td>\\n\",\n       \"      <td>71407675</td>\\n\",\n       \"      <td>SRR5146871</td>\\n\",\n       \"      <td>885724</td>\\n\",\n       \"      <td>166270272</td>\\n\",\n       \"      <td>GSM2446282_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446282</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2189</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464818</td>\\n\",\n       \"      <td>GSM2446281: HCC.ct-2; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446281: HCC.ct-2; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897277</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>775684</td>\\n\",\n       \"      <td>62094237</td>\\n\",\n       \"      <td>SRR5146870</td>\\n\",\n       \"      <td>775684</td>\\n\",\n       \"      <td>145671062</td>\\n\",\n       \"      <td>GSM2446281_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446281</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2190</th>\\n\",\n       \"      <td>SRP096127</td>\\n\",\n       \"      <td>SRX2464817</td>\\n\",\n       \"      <td>GSM2446280: HCC.ct-1; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>GSM2446280: HCC.ct-1; Homo sapiens; Bisulfite-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Bisulfite-Seq</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SRS1897276</td>\\n\",\n       \"      <td>N/A</td>\\n\",\n       \"      <td>Illumina HiSeq 2500</td>\\n\",\n       \"      <td>1124031</td>\\n\",\n       \"      <td>89769302</td>\\n\",\n       \"      <td>SRR5146869</td>\\n\",\n       \"      <td>1124031</td>\\n\",\n       \"      <td>212986785</td>\\n\",\n       \"      <td>GSM2446280_r1</td>\\n\",\n       \"      <td>https://sra-download.ncbi.nlm.nih.gov/traces/s...</td>\\n\",\n       \"      <td>https://sra-download.st-va.ncbi.nlm.nih.gov/so...</td>\\n\",\n       \"      <td>GSM2446280</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>blood serum</td>\\n\",\n       \"      <td>hepatocellular carcinoma patient</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>1654 rows × 24 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"     study_accession  ...                             group\\n\",\n       \"0          SRP096127  ...                   healthy control\\n\",\n       \"1          SRP096127  ...                   healthy control\\n\",\n       \"2          SRP096127  ...                   healthy control\\n\",\n       \"3          SRP096127  ...                   healthy control\\n\",\n       \"4          SRP096127  ...                   healthy control\\n\",\n       \"...              ...  ...                               ...\\n\",\n       \"2186       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2187       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2188       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2189       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"2190       SRP096127  ...  hepatocellular carcinoma patient\\n\",\n       \"\\n\",\n       \"[1654 rows x 24 columns]\"\n      ]\n     },\n     \"metadata\": {\n      \"tags\": []\n     },\n     \"execution_count\": 5\n    }\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"QXPobpr-PqsR\",\n    \"colab_type\": \"code\",\n    \"colab\": {}\n   },\n   \"source\": [\n    \"db.download(df=df_contig_subset, url_col=\\\"sra_url_alt\\\")\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": []\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"Y-RVanikKONY\",\n    \"colab_type\": \"text\"\n   },\n   \"source\": [\n    \"## Example with a fastq file (submitted through ENA)\\n\",\n    \"\\n\",\n    \"https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR1520686\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"metadata\": {\n    \"id\": \"TwIoS6ImKEHb\",\n    \"colab_type\": \"code\",\n    \"outputId\": \"4e8fa031-9f88-4bb0-f994-b4bc3aae9341\",\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 300\n    }\n   },\n   \"source\": [\n    \"df = db.sra_metadata(\\\"ERP015299\\\", detailed=True)\\n\",\n    \"df\"\n   ],\n   \"execution_count\": 0,\n   \"outputs\": [\n    {\n     \"output_type\": \"error\",\n     \"ename\": \"AttributeError\",\n     \"evalue\": \"ignored\",\n     \"traceback\": [\n      \"\\u001b[0;31m---------------------------------------------------------------------------\\u001b[0m\",\n      \"\\u001b[0;31mAttributeError\\u001b[0m                            Traceback (most recent call last)\",\n      \"\\u001b[0;32m<ipython-input-11-1792c85e0c4f>\\u001b[0m in \\u001b[0;36m<module>\\u001b[0;34m()\\u001b[0m\\n\\u001b[0;32m----> 1\\u001b[0;31m \\u001b[0mdf\\u001b[0m \\u001b[0;34m=\\u001b[0m \\u001b[0mdb\\u001b[0m\\u001b[0;34m.\\u001b[0m\\u001b[0msra_metadata\\u001b[0m\\u001b[0;34m(\\u001b[0m\\u001b[0;34m'ERP015299'\\u001b[0m\\u001b[0;34m,\\u001b[0m \\u001b[0mdetailed\\u001b[0m\\u001b[0;34m=\\u001b[0m\\u001b[0;32mTrue\\u001b[0m\\u001b[0;34m)\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\\u001b[0m\\u001b[1;32m      2\\u001b[0m \\u001b[0mdf\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\",\n      \"\\u001b[0;32m/usr/local/lib/python3.6/dist-packages/pysradb/sraweb.py\\u001b[0m in \\u001b[0;36msra_metadata\\u001b[0;34m(self, srp, sample_attribute, detailed, expand_sample_attributes, output_read_lengths, **kwargs)\\u001b[0m\\n\\u001b[1;32m    396\\u001b[0m                 \\u001b[0;31m# detailed_record[\\\"run_total_spots\\\"] = run_set[\\\"@total_spots\\\"]\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\\u001b[1;32m    397\\u001b[0m                 \\u001b[0;32mfor\\u001b[0m \\u001b[0msample_attribute\\u001b[0m \\u001b[0;32min\\u001b[0m \\u001b[0msample_attributes\\u001b[0m\\u001b[0;34m:\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\\u001b[0;32m--> 398\\u001b[0;31m                     \\u001b[0mdict_values\\u001b[0m \\u001b[0;34m=\\u001b[0m \\u001b[0mlist\\u001b[0m\\u001b[0;34m(\\u001b[0m\\u001b[0msample_attribute\\u001b[0m\\u001b[0;34m.\\u001b[0m\\u001b[0mvalues\\u001b[0m\\u001b[0;34m(\\u001b[0m\\u001b[0;34m)\\u001b[0m\\u001b[0;34m)\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\\u001b[0m\\u001b[1;32m    399\\u001b[0m                     \\u001b[0mdetailed_record\\u001b[0m\\u001b[0;34m[\\u001b[0m\\u001b[0mdict_values\\u001b[0m\\u001b[0;34m[\\u001b[0m\\u001b[0;36m0\\u001b[0m\\u001b[0;34m]\\u001b[0m\\u001b[0;34m]\\u001b[0m \\u001b[0;34m=\\u001b[0m \\u001b[0mdict_values\\u001b[0m\\u001b[0;34m[\\u001b[0m\\u001b[0;36m1\\u001b[0m\\u001b[0;34m]\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\\u001b[1;32m    400\\u001b[0m                     \\u001b[0mdetailed_records\\u001b[0m\\u001b[0;34m.\\u001b[0m\\u001b[0mappend\\u001b[0m\\u001b[0;34m(\\u001b[0m\\u001b[0mdetailed_record\\u001b[0m\\u001b[0;34m)\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0;34m\\u001b[0m\\u001b[0m\\n\",\n      \"\\u001b[0;31mAttributeError\\u001b[0m: 'str' object has no attribute 'values'\"\n     ]\n    }\n   ]\n  }\n ]\n}"
  },
  {
    "path": "notebooks/06.Multiple_SRPs.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/06.Multiple_SRPs.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Querying Multiple Projects\\n\",\n    \"\\n\",\n    \"This notebook demonstrates how to query and export metadata from multiple SRA projects at once.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 401\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"kPEeKLC38WGX\",\n    \"outputId\": \"45055cff-1f41-4b1d-f67f-0a4dc37a8333\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"# pip install git+https://github.com/saketkc/pysradb.git\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"colab\": {},\n    \"colab_type\": \"code\",\n    \"id\": \"n-lUysUE8edh\"\n   },\n   \"outputs\": [],\n   \"source\": [\n    \"SRP_list = \\\"\\\"\\\"ERP009675\\n\",\n    \"ERP007116\\n\",\n    \"ERP007115\\n\",\n    \"ERP004563\\n\",\n    \"ERP005660\\n\",\n    \"ERP001266\\n\",\n    \"ERP002072\\n\",\n    \"ERP001882\\n\",\n    \"ERP004883\\n\",\n    \"ERP004508\\n\",\n    \"ERP004393\\n\",\n    \"ERP005409\\n\",\n    \"ERP001464\\n\",\n    \"ERP004042\\n\",\n    \"ERP004375\\n\",\n    \"ERP003293\\n\",\n    \"ERP004689\\n\",\n    \"ERP001094\\n\",\n    \"ERP003728\\n\",\n    \"ERP000730\\n\",\n    \"ERP000411\\n\",\n    \"ERP000319\\n\",\n    \"SRP041183\\n\",\n    \"SRP011912\\n\",\n    \"SRP058392\\n\",\n    \"SRP044705\\n\",\n    \"SRP036841\\n\",\n    \"SRP050120\\n\",\n    \"ERP004116\\n\",\n    \"SRP030662\\n\",\n    \"SRP047217\\n\",\n    \"SRP045505\\n\",\n    \"ERP001556\\n\",\n    \"ERP000546\\n\",\n    \"SRP045252\\n\",\n    \"SRP044714\\n\",\n    \"DRP000524\\n\",\n    \"SRP044907\\n\",\n    \"SRP019970\\n\",\n    \"SRP044131\\n\",\n    \"SRP044042\\n\",\n    \"SRP043602\\n\",\n    \"SRP043523\\n\",\n    \"SRP014570\\n\",\n    \"SRP043067\\n\",\n    \"SRP042370\\n\",\n    \"SRP042360\\n\",\n    \"SRP042159\\n\",\n    \"SRP042085\\n\",\n    \"SRP042053\\n\",\n    \"SRP041992\\n\",\n    \"SRP041738\\n\",\n    \"SRP041679\\n\",\n    \"SRP041669\\n\",\n    \"SRP041622\\n\",\n    \"SRP041182\\n\",\n    \"SRP041377\\n\",\n    \"SRP021009\\n\",\n    \"SRP041216\\n\",\n    \"SRP041129\\n\",\n    \"SRP041119\\n\",\n    \"SRP041044\\n\",\n    \"SRP040761\\n\",\n    \"SRP040479\\n\",\n    \"SRP040072\\n\",\n    \"SRP040070\\n\",\n    \"SRP040121\\n\",\n    \"SRP040044\\n\",\n    \"SRP039841\\n\",\n    \"SRP039779\\n\",\n    \"SRP039717\\n\",\n    \"SRP039699\\n\",\n    \"SRP039672\\n\",\n    \"SRP039661\\n\",\n    \"SRP039646\\n\",\n    \"SRP039634\\n\",\n    \"SRP035451\\n\",\n    \"SRP039551\\n\",\n    \"SRP039478\\n\",\n    \"SRP039440\\n\",\n    \"SRP039448\\n\",\n    \"SRP030474\\n\",\n    \"SRP034507\\n\",\n    \"SRP038004\\n\",\n    \"SRP037780\\n\",\n    \"SRP037583\\n\",\n    \"SRP036068\\n\",\n    \"SRP036637\\n\",\n    \"SRP036632\\n\",\n    \"SRP035368\\n\",\n    \"SRP035278\\n\",\n    \"SRP034930\\n\",\n    \"SRP034844\\n\",\n    \"ERP004159\\n\",\n    \"SRP017087\\n\",\n    \"SRP034444\\n\",\n    \"SRP033229\\n\",\n    \"SRP033198\\n\",\n    \"SRP033021\\n\",\n    \"ERP000964\\n\",\n    \"ERP002429\\n\",\n    \"SRP032928\\n\",\n    \"SRP032833\\n\",\n    \"SRP032792\\n\",\n    \"SRP032766\\n\",\n    \"ERP003855\\n\",\n    \"ERP000904\\n\",\n    \"SRP028229\\n\",\n    \"SRP026361\\n\",\n    \"SRP023111\\n\",\n    \"SRP021139\\n\",\n    \"SRP013319\\n\",\n    \"SRP020006\\n\",\n    \"SRP019994\\n\",\n    \"SRP019500\\n\",\n    \"SRP019241\\n\",\n    \"SRP018672\\n\",\n    \"SRP018358\\n\",\n    \"SRP016875\\n\",\n    \"SRP016501\\n\",\n    \"SRP015460\\n\",\n    \"SRP015370\\n\",\n    \"SRP015135\\n\",\n    \"SRP014437\\n\",\n    \"SRP012378\\n\",\n    \"SRP012018\\n\",\n    \"SRP010103\\n\",\n    \"SRP007831\\n\",\n    \"SRP007412\\n\",\n    \"SRP007400\\n\",\n    \"SRP002090\\n\",\n    \"SRP029153\\n\",\n    \"SRP029445\\n\",\n    \"SRP029427\\n\",\n    \"SRP029380\\n\",\n    \"SRP029330\\n\",\n    \"SRP029333\\n\",\n    \"ERP000606\\n\",\n    \"ERP000415\\n\",\n    \"ERP001977\\n\",\n    \"ERP000373\\n\",\n    \"SRP029172\\n\",\n    \"SRP028766\\n\",\n    \"ERP000668\\n\",\n    \"ERP003627\\n\",\n    \"SRP017364\\n\",\n    \"SRP025757\\n\",\n    \"SRP021189\\n\",\n    \"SRP011154\\n\",\n    \"SRP014574\\n\",\n    \"SRP017935\\n\",\n    \"SRP016889\\n\",\n    \"SRP002016\\n\",\n    \"SRP018826\\n\",\n    \"SRP018753\\n\",\n    \"SRP009821\\n\",\n    \"SRP012925\\n\",\n    \"SRP012850\\n\",\n    \"SRP009870\\n\",\n    \"SRP007799\\n\",\n    \"SRP006748\\n\",\n    \"SRP000373\\\"\\\"\\\"\\n\",\n    \"SRP_list = SRP_list.split(\\\"\\\\n\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 72\n    },\n    \"colab_type\": \"code\",\n    \"id\": \"1CWmd5rF8yny\",\n    \"outputId\": \"519c91be-e3b9-48a3-fd47-fbe415bd0b2a\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/home/saket/miniforge3/lib/python3.12/site-packages/pysradb/utils.py:14: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\",\n      \"Error with SRP045252\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"import sys\\n\",\n    \"import time\\n\",\n    \"\\n\",\n    \"from pysradb import SRAweb\\n\",\n    \"\\n\",\n    \"db = SRAweb()\\n\",\n    \"\\n\",\n    \"for srp in SRP_list:\\n\",\n    \"    try:\\n\",\n    \"        df = db.sra_metadata(srp)\\n\",\n    \"        df.to_csv(\\\"{}.tsv\\\".format(srp), sep=\\\"\\\\t\\\", index=False)\\n\",\n    \"    except:\\n\",\n    \"        sys.stderr.write(\\\"Error with {}\\\\n\\\".format(srp))\\n\",\n    \"        time.sleep(0.5)\\n\",\n    \"    time.sleep(0.5)\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"colab\": {\n   \"authorship_tag\": \"ABX9TyMmcvA8kJPyf4bhs59mCISs\",\n   \"include_colab_link\": true,\n   \"mount_file_id\": \"1pNeuZJjjHliYFk582kGNRpGJ1Fa2h9cn\",\n   \"name\": \"07.Multiple_SRPs\",\n   \"provenance\": []\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.12.11\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/07.Query_Search.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/07.Query_Search.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Query and Search\\n\",\n    \"\\n\",\n    \"This notebook demonstrates advanced search capabilities to find SRA studies based on specific criteria.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## pysradb search\\n\",\n    \"##### The pysradb search module supports querying the Sequence Read Archive (SRA) and the European Nucleotide Archive (ENA) databases for sequencing data. The module also includes several built-in flags that can be used to fine-tune a search query.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<style>\\n\",\n       \"th {font-size: 16px;}\\n\",\n       \"td {font-size: 14px;}\\n\",\n       \"td:first-child {font-size: 15px; font-weight: 500;}\\n\",\n       \"</style>\\n\"\n      ],\n      \"text/plain\": [\n       \"<IPython.core.display.HTML object>\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    }\n   ],\n   \"source\": [\n    \"%%html\\n\",\n    \"<style>\\n\",\n    \"th {font-size: 16px;}\\n\",\n    \"td {font-size: 14px;}\\n\",\n    \"td:first-child {font-size: 15px; font-weight: 500;}\\n\",\n    \"</style>\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"### Terminal flags for the pysradb search module:\\n\",\n    \"\\n\",\n    \"|Flags | Explanation|\\n\",\n    \"|----------|------------|\\n\",\n    \"| -h, --help | Displays the help message |\\n\",\n    \"| --saveto | Saves the result in the file specified by the user.<br>Supported file types: txt, tsv, csv |\\n\",\n    \"| --db   | Selects the database (SRA, ENA, or both SRA and Geo DataSets) to query. Default database is SRA. Accepted inputs: sra, ena, geo|\\n\",\n    \"| -v, --verbosity  | This determines how much details are retrieved and shown in the search result: <br>0: run_accession only <br>1: run_accession and experiment_description only <br>2: <u>(default)</u> study_accession, experiment_accession, experiment_title, description, tax_id, scientific_name, library_strategy, <br>library_source, library_selection, sample_accession, sample_title, instrument_model, run_accession, read_count, base_count <br>3: Everything in verbosity level 2, followed by all other retrievable information from the database|\\n\",\n    \"| -m, --max | Maximum number of returned entries. Default number is 20.<br>Note: If the maximum number set is large, querying the SRA and GEO DataSets databases will take significantly longer due to API limits|\\n\",\n    \"| -q, --query | The main query string. <br><u>Note: if this flag is not used, at least one of the following flags must be supplied</u>: |\\n\",\n    \"| --accession | A relevant study / experiment / sample / run accession number|\\n\",\n    \"| --organism | Scientific name of the sample organism |\\n\",\n    \"| --layout | Library layout. Accepted inputs: single, paired|\\n\",\n    \"| --mbases | Size of the sample rounded to the nearest megabase|\\n\",\n    \"| --publication-date | The publication date of the run in the format dd-mm-yyyy. If a date range is desired, <br>enter the start date, followed by end date, separated by a colon ':' in the format dd-mm-yyyy:dd-mm-yyyy <br>Example: 01-01-2010:31-12-2010|\\n\",\n    \"| --platform | Sequencing platform used for the run. Possible inputs: illumina, ion torrent, oxford nanopore |\\n\",\n    \"| --selection | Library selection. Possible inputs: cdna, chip, dnase, pcr, polya |\\n\",\n    \"| --source | Library source. Possible inputs: genomic, metagenomic, transcriptomic |\\n\",\n    \"| --strategy | Library Preparation strategy. Possible inputs: wgs, amplicon, rna seq |\\n\",\n    \"| --title | Title of the experiment associated with the run |\\n\",\n    \"| --geo-query | The main query string to be sent to Geo DataSets |\\n\",\n    \"| --geo-dataset-type | Dataset type. Possible inputs: expression profiling by array, expression profiling by high throughput sequencing, non coding rna profiling by high throughput sequencing |\\n\",\n    \"| --geo-entry-type | Entry type. Accepted inputs: gds, gpl, gse, gsm |\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"### Using pysradb search in python:\\n\",\n    \"\\n\",\n    \"##### pysradb search organises each search query as a instance of either the SraSearch, EnaSearch or the GeoSearch classes. These classes takes in the following parameters in their constructor: \\n\",\n    \"\\n\",\n    \"\\n\",\n    \"\\n\",\n    \"<b>`SraSearch (verbosity=2, return_max=20, query=None, accession=None, organism=None, layout=None, mbases=None, publication_date=None, platform=None, selection=None, source=None, strategy=None, title=None, suppress_validation=False,) ` </b>\\n\",\n    \"\\n\",\n    \"\\n\",\n    \"<b>`EnaSearch (verbosity=2, return_max=20, query=None, accession=None, organism=None, layout=None, mbases=None, publication_date=None, platform=None, selection=None, source=None, strategy=None, title=None, suppress_validation=False,) ` </b>\\n\",\n    \"\\n\",\n    \"<b>`GeoSearch (verbosity=2, return_max=20, query=None, accession=None, organism=None, layout=None, mbases=None, publication_date=None, platform=None, selection=None, source=None, strategy=None, title=None, geo_query=None, geo_dataset_type=None, geo_entry_type=None, suppress_validation=False,) ` </b>\\n\",\n    \"\\n\",\n    \"| Parameters | Explanations|\\n\",\n    \"|----------|------------|\\n\",\n    \"| verbosity | This determines how much details are retrieved and shown in the search result (default=2). Same as -v / --verbosity on terminal |\\n\",\n    \"| return_max | Maximum number of returned entries (default=20). Same as -m / --max on terminal |\\n\",\n    \"| suppress_validation | Defaults to False. If this is set to True, the user input format checks will be skipped. Setting this to True may cause the program to behave in unexpected ways, but allows the user to search queries that does not pass the format check.|\\n\",\n    \"\\n\",\n    \"Other parameters match the command line flags of the same name.\\n\",\n    \"<br>\\n\",\n    \"<br>\\n\",\n    \"\\n\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### To query the SRA database for ribosome profiling, expecting an output of verbosity level 2, and returning at most 5 entries, we can do the following:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/data/github/pysradb/pysradb/utils.py:14: TqdmWarning: IProgress not found. Please update jupyter and ipywidgets. See https://ipywidgets.readthedocs.io/en/stable/user_install.html\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\",\n      \"100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 5/5 [00:00<00:00,  5.58it/s]\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"  study_accession experiment_accession  \\\\\\n\",\n      \"0       SRP630668          SRX30794203   \\n\",\n      \"1       SRP630668          SRX30794202   \\n\",\n      \"2       SRP630668          SRX30794201   \\n\",\n      \"3       SRP630668          SRX30794200   \\n\",\n      \"4       ERP179251          ERX14883219   \\n\",\n      \"\\n\",\n      \"                                    experiment_title sample_taxon_id  \\\\\\n\",\n      \"0                shRNA treated replicate 2, Ribo-seq            9606   \\n\",\n      \"1                shRNA treated replicate 1, Ribo-seq            9606   \\n\",\n      \"2             negative control replicate 2, Ribo-seq            9606   \\n\",\n      \"3             negative control replicate 1, Ribo-seq            9606   \\n\",\n      \"4  Ribosome profiling and RNA-seq of Salmonella i...           10090   \\n\",\n      \"\\n\",\n      \"  sample_scientific_name experiment_library_strategy  \\\\\\n\",\n      \"0           Homo sapiens                    Ribo-seq   \\n\",\n      \"1           Homo sapiens                    Ribo-seq   \\n\",\n      \"2           Homo sapiens                    Ribo-seq   \\n\",\n      \"3           Homo sapiens                    Ribo-seq   \\n\",\n      \"4           Mus musculus                       OTHER   \\n\",\n      \"\\n\",\n      \"  experiment_library_source experiment_library_selection sample_accession  \\\\\\n\",\n      \"0            TRANSCRIPTOMIC           size fractionation      SRS26807700   \\n\",\n      \"1            TRANSCRIPTOMIC           size fractionation      SRS26807699   \\n\",\n      \"2            TRANSCRIPTOMIC           size fractionation      SRS26807698   \\n\",\n      \"3            TRANSCRIPTOMIC           size fractionation      SRS26807697   \\n\",\n      \"4                     OTHER                        other      ERS26530900   \\n\",\n      \"\\n\",\n      \"     sample_alias experiment_instrument_model pool_member_spots  run_1_size  \\\\\\n\",\n      \"0        sh2_ribo     Illumina NovaSeq X Plus          57288768  1354504305   \\n\",\n      \"1        sh1_ribo     Illumina NovaSeq X Plus          61293382  1431873887   \\n\",\n      \"2        nc2_ribo     Illumina NovaSeq X Plus          85858060  2060965292   \\n\",\n      \"3        nc1_ribo     Illumina NovaSeq X Plus          61189912  1474261116   \\n\",\n      \"4  SAMEA119980013                NextSeq 2000          14962757        <NA>   \\n\",\n      \"\\n\",\n      \"  run_1_accession run_1_total_spots run_1_total_bases  \\n\",\n      \"0     SRR35744894          57288768        4296657600  \\n\",\n      \"1     SRR35744895          61293382        4597003650  \\n\",\n      \"2     SRR35744896          85858060        6439354500  \\n\",\n      \"3     SRR35744897          61189912        4589243400  \\n\",\n      \"4     ERR15479323              <NA>              <NA>  \\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import SraSearch\\n\",\n    \"\\n\",\n    \"instance = SraSearch(2, 5, query=\\\"ribosome profiling\\\")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"print(df)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"### Quickstart\\n\",\n    \"\\n\",\n    \"##### To query ENA instead, replace SraSearch class with the EnaSearch class:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Empty DataFrame\\n\",\n      \"Columns: []\\n\",\n      \"Index: []\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import EnaSearch\\n\",\n    \"\\n\",\n    \"instance = EnaSearch(2, 5, \\\"ribosome profiling\\\")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"print(df)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"##### To query GEO DataSets instead and retrieve the metadata of linked entries in SRA:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 5/5 [00:00<00:00,  5.53it/s]\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"  study_accession experiment_accession  \\\\\\n\",\n      \"0       SRP619527          SRX30454639   \\n\",\n      \"1       SRP619527          SRX30454638   \\n\",\n      \"2       SRP619527          SRX30454637   \\n\",\n      \"3       SRP619527          SRX30454636   \\n\",\n      \"4       SRP618293          SRX30400919   \\n\",\n      \"\\n\",\n      \"                                    experiment_title sample_taxon_id  \\\\\\n\",\n      \"0  GSM9233466: Eef1g-cKO leptotene and zygotene_r...           10090   \\n\",\n      \"1  GSM9233465: Eef1g-cKO leptotene and zygotene_r...           10090   \\n\",\n      \"2  GSM9233464: Control leptotene and zygotene_rep...           10090   \\n\",\n      \"3  GSM9233463: Control leptotene and zygotene_rep...           10090   \\n\",\n      \"4  GSM9224243: Eef1g cKO leptotene/zygotene sperm...           10090   \\n\",\n      \"\\n\",\n      \"  sample_scientific_name experiment_library_strategy  \\\\\\n\",\n      \"0           Mus musculus                       OTHER   \\n\",\n      \"1           Mus musculus                       OTHER   \\n\",\n      \"2           Mus musculus                       OTHER   \\n\",\n      \"3           Mus musculus                       OTHER   \\n\",\n      \"4           Mus musculus                     RNA-Seq   \\n\",\n      \"\\n\",\n      \"  experiment_library_source experiment_library_selection sample_accession  \\\\\\n\",\n      \"0            TRANSCRIPTOMIC                        other      SRS26489458   \\n\",\n      \"1            TRANSCRIPTOMIC                        other      SRS26489457   \\n\",\n      \"2            TRANSCRIPTOMIC                        other      SRS26489456   \\n\",\n      \"3            TRANSCRIPTOMIC                        other      SRS26489455   \\n\",\n      \"4            TRANSCRIPTOMIC                         cDNA      SRS26437528   \\n\",\n      \"\\n\",\n      \"  sample_alias experiment_instrument_model pool_member_spots   run_1_size  \\\\\\n\",\n      \"0   GSM9233466       Illumina NovaSeq 6000          69632843   8660602662   \\n\",\n      \"1   GSM9233465       Illumina NovaSeq 6000          98921214  12243831179   \\n\",\n      \"2   GSM9233464       Illumina NovaSeq 6000          38336833   4708346735   \\n\",\n      \"3   GSM9233463       Illumina NovaSeq 6000          88212319  11000694382   \\n\",\n      \"4   GSM9224243          Illumina NovaSeq X          15236947   1826954111   \\n\",\n      \"\\n\",\n      \"  run_1_accession run_1_total_spots run_1_total_bases  \\n\",\n      \"0     SRR35360226          69632843       20889852900  \\n\",\n      \"1     SRR35360227          98921214       29676364200  \\n\",\n      \"2     SRR35360228          38336833       11501049900  \\n\",\n      \"3     SRR35360229          88212319       26463695700  \\n\",\n      \"4     SRR35298842          15236947        4571084100  \\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import GeoSearch\\n\",\n    \"\\n\",\n    \"instance = GeoSearch(2, 5, geo_query=\\\"ribosome profiling\\\")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"print(df)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 7. Querying GEO DataSets with publication_date filter and displaying publication dates in results:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"No results found for the following search query: \\n\",\n      \" SRA: {'query': 'sra gds[Filter]', 'accession': None, 'organism': None, 'layout': None, 'mbases': None, 'publication_date': '01-09-2024:30-09-2024', 'platform': None, 'selection': None, 'source': None, 'strategy': None, 'title': None}\\n\",\n      \"GEO DataSets: {'query': 'RNA-Seq AND gds sra[Filter]', 'dataset_type': None, 'entry_type': None, 'publication_date': '01-09-2024:30-09-2024', 'organism': None}\\n\",\n      \"Empty DataFrame\\n\",\n      \"Columns: []\\n\",\n      \"Index: []\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import GeoSearch\\n\",\n    \"\\n\",\n    \"# Search for RNA-Seq datasets published in September 2024\\n\",\n    \"# Using verbosity=3 to get all available fields including publication_date\\n\",\n    \"instance = GeoSearch(\\n\",\n    \"    verbosity=3,\\n\",\n    \"    return_max=5,\\n\",\n    \"    geo_query=\\\"RNA-Seq\\\",\\n\",\n    \"    publication_date=\\\"01-09-2024:30-09-2024\\\",\\n\",\n    \")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"\\n\",\n    \"# Display select columns including publication_date\\n\",\n    \"if not df.empty and \\\"publication_date\\\" in df.columns:\\n\",\n    \"    cols_to_show = [\\n\",\n    \"        \\\"study_accession\\\",\\n\",\n    \"        \\\"experiment_accession\\\",\\n\",\n    \"        \\\"sample_scientific_name\\\",\\n\",\n    \"        \\\"experiment_library_strategy\\\",\\n\",\n    \"        \\\"publication_date\\\",\\n\",\n    \"    ]\\n\",\n    \"    available_cols = [c for c in cols_to_show if c in df.columns]\\n\",\n    \"    print(df[available_cols])\\n\",\n    \"else:\\n\",\n    \"    print(df)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"### Error Handling\\n\",\n    \"\\n\",\n    \"##### When suppress_validation is not set to True, query fields with incorrect entries will raise IncorrectFieldException, which provides the complete list of acceptable inputs for fields such as \\\"selection\\\", etc:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 6,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"ename\": \"IncorrectFieldException\",\n     \"evalue\": \"Incorrect selection: Mudkip\\n--selection must be one of the following: \\n5-methylcytidine antibody, CAGE, ChIP, ChIP-Seq, DNase, HMPR, Hybrid Selection,  \\nInverse rRNA, Inverse rRNA selection, MBD2 protein methyl-CpG binding domain, \\nMDA, MF, MNase, MSLL, Oligo-dT, PCR, PolyA, RACE, RANDOM, RANDOM PCR, RT-PCR,  \\nReduced Representation, Restriction Digest, cDNA, cDNA_oligo_dT, cDNA_randomPriming \\nother, padlock probes capture method, repeat fractionation, size fractionation, \\nunspecified\\n\\n\",\n     \"output_type\": \"error\",\n     \"traceback\": [\n      \"\\u001b[0;31m---------------------------------------------------------------------------\\u001b[0m\",\n      \"\\u001b[0;31mIncorrectFieldException\\u001b[0m                   Traceback (most recent call last)\",\n      \"Cell \\u001b[0;32mIn[6], line 2\\u001b[0m\\n\\u001b[1;32m      1\\u001b[0m \\u001b[38;5;66;03m# 1. Invalid query entered for \\\"selection\\\"\\u001b[39;00m\\n\\u001b[0;32m----> 2\\u001b[0m \\u001b[43mSraSearch\\u001b[49m\\u001b[43m(\\u001b[49m\\u001b[43mselection\\u001b[49m\\u001b[38;5;241;43m=\\u001b[39;49m\\u001b[38;5;124;43m\\\"\\u001b[39;49m\\u001b[38;5;124;43mMudkip\\u001b[39;49m\\u001b[38;5;124;43m\\\"\\u001b[39;49m\\u001b[43m)\\u001b[49m\\n\",\n      \"File \\u001b[0;32m/data/github/pysradb/pysradb/search.py:735\\u001b[0m, in \\u001b[0;36mSraSearch.__init__\\u001b[0;34m(self, verbosity, return_max, query, accession, organism, layout, mbases, publication_date, platform, selection, source, strategy, title, suppress_validation)\\u001b[0m\\n\\u001b[1;32m    718\\u001b[0m \\u001b[38;5;28;01mdef\\u001b[39;00m\\u001b[38;5;250m \\u001b[39m\\u001b[38;5;21m__init__\\u001b[39m(\\n\\u001b[1;32m    719\\u001b[0m     \\u001b[38;5;28mself\\u001b[39m,\\n\\u001b[1;32m    720\\u001b[0m     verbosity\\u001b[38;5;241m=\\u001b[39m\\u001b[38;5;241m2\\u001b[39m,\\n\\u001b[0;32m   (...)\\u001b[0m\\n\\u001b[1;32m    733\\u001b[0m     suppress_validation\\u001b[38;5;241m=\\u001b[39m\\u001b[38;5;28;01mFalse\\u001b[39;00m,\\n\\u001b[1;32m    734\\u001b[0m ):\\n\\u001b[0;32m--> 735\\u001b[0m     \\u001b[38;5;28;43msuper\\u001b[39;49m\\u001b[43m(\\u001b[49m\\u001b[43m)\\u001b[49m\\u001b[38;5;241;43m.\\u001b[39;49m\\u001b[38;5;21;43m__init__\\u001b[39;49m\\u001b[43m(\\u001b[49m\\n\\u001b[1;32m    736\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mverbosity\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    737\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mreturn_max\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    738\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mquery\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    739\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43maccession\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    740\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43morganism\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    741\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mlayout\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    742\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mmbases\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    743\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mpublication_date\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    744\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mplatform\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    745\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mselection\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    746\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43msource\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    747\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mstrategy\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    748\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43mtitle\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    749\\u001b[0m \\u001b[43m        \\u001b[49m\\u001b[43msuppress_validation\\u001b[49m\\u001b[43m,\\u001b[49m\\n\\u001b[1;32m    750\\u001b[0m \\u001b[43m    \\u001b[49m\\u001b[43m)\\u001b[49m\\n\\u001b[1;32m    751\\u001b[0m     \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mentries \\u001b[38;5;241m=\\u001b[39m {}\\n\\u001b[1;32m    752\\u001b[0m     \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mnumber_entries \\u001b[38;5;241m=\\u001b[39m \\u001b[38;5;241m0\\u001b[39m\\n\",\n      \"File \\u001b[0;32m/data/github/pysradb/pysradb/search.py:152\\u001b[0m, in \\u001b[0;36mQuerySearch.__init__\\u001b[0;34m(self, verbosity, return_max, query, accession, organism, layout, mbases, publication_date, platform, selection, source, strategy, title, suppress_validation)\\u001b[0m\\n\\u001b[1;32m    150\\u001b[0m     \\u001b[38;5;28;01mraise\\u001b[39;00m MissingQueryException()\\n\\u001b[1;32m    151\\u001b[0m \\u001b[38;5;28;01mif\\u001b[39;00m \\u001b[38;5;129;01mnot\\u001b[39;00m suppress_validation:\\n\\u001b[0;32m--> 152\\u001b[0m     \\u001b[38;5;28;43mself\\u001b[39;49m\\u001b[38;5;241;43m.\\u001b[39;49m\\u001b[43m_validate_fields\\u001b[49m\\u001b[43m(\\u001b[49m\\u001b[43m)\\u001b[49m\\n\\u001b[1;32m    153\\u001b[0m \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mstats \\u001b[38;5;241m=\\u001b[39m {\\n\\u001b[1;32m    154\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mstudy\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[1;32m    155\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mexperiment\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[0;32m   (...)\\u001b[0m\\n\\u001b[1;32m    167\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mcount_stdev\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[1;32m    168\\u001b[0m }\\n\\u001b[1;32m    169\\u001b[0m \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mplot_objects \\u001b[38;5;241m=\\u001b[39m {}\\n\",\n      \"File \\u001b[0;32m/data/github/pysradb/pysradb/search.py:449\\u001b[0m, in \\u001b[0;36mQuerySearch._validate_fields\\u001b[0;34m(self)\\u001b[0m\\n\\u001b[1;32m    447\\u001b[0m         \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mfields[\\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mstrategy\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m] \\u001b[38;5;241m=\\u001b[39m output[\\u001b[38;5;241m0\\u001b[39m]\\n\\u001b[1;32m    448\\u001b[0m \\u001b[38;5;28;01mif\\u001b[39;00m message:\\n\\u001b[0;32m--> 449\\u001b[0m     \\u001b[38;5;28;01mraise\\u001b[39;00m IncorrectFieldException(message)\\n\",\n      \"\\u001b[0;31mIncorrectFieldException\\u001b[0m: Incorrect selection: Mudkip\\n--selection must be one of the following: \\n5-methylcytidine antibody, CAGE, ChIP, ChIP-Seq, DNase, HMPR, Hybrid Selection,  \\nInverse rRNA, Inverse rRNA selection, MBD2 protein methyl-CpG binding domain, \\nMDA, MF, MNase, MSLL, Oligo-dT, PCR, PolyA, RACE, RANDOM, RANDOM PCR, RT-PCR,  \\nReduced Representation, Restriction Digest, cDNA, cDNA_oligo_dT, cDNA_randomPriming \\nother, padlock probes capture method, repeat fractionation, size fractionation, \\nunspecified\\n\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# 1. Invalid query entered for \\\"selection\\\"\\n\",\n    \"SraSearch(selection=\\\"Mudkip\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"ename\": \"IncorrectFieldException\",\n     \"evalue\": \"Multiple potential matches have been identified for metagenomic viral rna :\\n['METAGENOMIC', 'VIRAL RNA']\\nPlease check your input.\\n\\n\",\n     \"output_type\": \"error\",\n     \"traceback\": [\n      \"\\u001b[0;31m---------------------------------------------------------------------------\\u001b[0m\",\n      \"\\u001b[0;31mIncorrectFieldException\\u001b[0m                   Traceback (most recent call last)\",\n      \"Cell \\u001b[0;32mIn[7], line 2\\u001b[0m\\n\\u001b[1;32m      1\\u001b[0m \\u001b[38;5;66;03m# 2. Ambiguous query entered for \\\"source\\\":\\u001b[39;00m\\n\\u001b[0;32m----> 2\\u001b[0m \\u001b[43mEnaSearch\\u001b[49m\\u001b[43m(\\u001b[49m\\u001b[43msource\\u001b[49m\\u001b[38;5;241;43m=\\u001b[39;49m\\u001b[38;5;124;43m\\\"\\u001b[39;49m\\u001b[38;5;124;43mmetagenomic viral rna \\u001b[39;49m\\u001b[38;5;124;43m\\\"\\u001b[39;49m\\u001b[43m)\\u001b[49m\\n\",\n      \"File \\u001b[0;32m/data/github/pysradb/pysradb/search.py:152\\u001b[0m, in \\u001b[0;36mQuerySearch.__init__\\u001b[0;34m(self, verbosity, return_max, query, accession, organism, layout, mbases, publication_date, platform, selection, source, strategy, title, suppress_validation)\\u001b[0m\\n\\u001b[1;32m    150\\u001b[0m     \\u001b[38;5;28;01mraise\\u001b[39;00m MissingQueryException()\\n\\u001b[1;32m    151\\u001b[0m \\u001b[38;5;28;01mif\\u001b[39;00m \\u001b[38;5;129;01mnot\\u001b[39;00m suppress_validation:\\n\\u001b[0;32m--> 152\\u001b[0m     \\u001b[38;5;28;43mself\\u001b[39;49m\\u001b[38;5;241;43m.\\u001b[39;49m\\u001b[43m_validate_fields\\u001b[49m\\u001b[43m(\\u001b[49m\\u001b[43m)\\u001b[49m\\n\\u001b[1;32m    153\\u001b[0m \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mstats \\u001b[38;5;241m=\\u001b[39m {\\n\\u001b[1;32m    154\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mstudy\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[1;32m    155\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mexperiment\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[0;32m   (...)\\u001b[0m\\n\\u001b[1;32m    167\\u001b[0m     \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mcount_stdev\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m: \\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124m-\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m,\\n\\u001b[1;32m    168\\u001b[0m }\\n\\u001b[1;32m    169\\u001b[0m \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mplot_objects \\u001b[38;5;241m=\\u001b[39m {}\\n\",\n      \"File \\u001b[0;32m/data/github/pysradb/pysradb/search.py:449\\u001b[0m, in \\u001b[0;36mQuerySearch._validate_fields\\u001b[0;34m(self)\\u001b[0m\\n\\u001b[1;32m    447\\u001b[0m         \\u001b[38;5;28mself\\u001b[39m\\u001b[38;5;241m.\\u001b[39mfields[\\u001b[38;5;124m\\\"\\u001b[39m\\u001b[38;5;124mstrategy\\u001b[39m\\u001b[38;5;124m\\\"\\u001b[39m] \\u001b[38;5;241m=\\u001b[39m output[\\u001b[38;5;241m0\\u001b[39m]\\n\\u001b[1;32m    448\\u001b[0m \\u001b[38;5;28;01mif\\u001b[39;00m message:\\n\\u001b[0;32m--> 449\\u001b[0m     \\u001b[38;5;28;01mraise\\u001b[39;00m IncorrectFieldException(message)\\n\",\n      \"\\u001b[0;31mIncorrectFieldException\\u001b[0m: Multiple potential matches have been identified for metagenomic viral rna :\\n['METAGENOMIC', 'VIRAL RNA']\\nPlease check your input.\\n\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# 2. Ambiguous query entered for \\\"source\\\":\\n\",\n    \"EnaSearch(source=\\\"metagenomic viral rna \\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"### Usage Examples:\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"##### 1. Checking the help message on terminal:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"usage: pysradb search [-h] [-o SAVETO] [-s] [-g [GRAPHS]] [-d {ena,geo,sra}]\\n\",\n      \"                      [-v {0,1,2,3}] [--run-description] [--detailed] [-m MAX]\\n\",\n      \"                      [-q QUERY [QUERY ...]] [-A ACCESSION]\\n\",\n      \"                      [-O ORGANISM [ORGANISM ...]] [-L {SINGLE,PAIRED}]\\n\",\n      \"                      [-M MBASES] [-D PUBLICATION_DATE]\\n\",\n      \"                      [-P PLATFORM [PLATFORM ...]]\\n\",\n      \"                      [-E SELECTION [SELECTION ...]] [-C SOURCE [SOURCE ...]]\\n\",\n      \"                      [-S STRATEGY [STRATEGY ...]] [-T TITLE [TITLE ...]] [-I]\\n\",\n      \"                      [-G GEO_QUERY [GEO_QUERY ...]]\\n\",\n      \"                      [-Y GEO_DATASET_TYPE [GEO_DATASET_TYPE ...]]\\n\",\n      \"                      [-Z GEO_ENTRY_TYPE [GEO_ENTRY_TYPE ...]]\\n\",\n      \"\\n\",\n      \"options:\\n\",\n      \"  -h, --help            show this help message and exit\\n\",\n      \"  -o SAVETO, --saveto SAVETO\\n\",\n      \"                        Save search result dataframe to file\\n\",\n      \"  -s, --stats           Displays some useful statistics for the search\\n\",\n      \"                        results.\\n\",\n      \"  -g [GRAPHS], --graphs [GRAPHS]\\n\",\n      \"                        Generates graphs to illustrate the search result. By\\n\",\n      \"                        default all graphs are generated. Alternatively,\\n\",\n      \"                        select a subset from the options below in a space-\\n\",\n      \"                        separated string: daterange, organism, source,\\n\",\n      \"                        selection, platform, basecount\\n\",\n      \"  -d {ena,geo,sra}, --db {ena,geo,sra}\\n\",\n      \"                        Select the db API (sra, ena, or geo) to query, default\\n\",\n      \"                        = sra. Note: pysradb search works slightly differently\\n\",\n      \"                        when db = geo. Please refer to 'pysradb search --geo-\\n\",\n      \"                        info' for more details.\\n\",\n      \"  -v {0,1,2,3}, --verbosity {0,1,2,3}\\n\",\n      \"                        Level of search result details (0, 1, 2 or 3), default\\n\",\n      \"                        = 2 0: run accession only 1: run accession and\\n\",\n      \"                        experiment title 2: accession numbers, titles and\\n\",\n      \"                        sequencing information 3: records in 2 and other\\n\",\n      \"                        information such as download url, sample attributes,\\n\",\n      \"                        etc\\n\",\n      \"  --run-description     Displays run accessions and descriptions only.\\n\",\n      \"                        Equivalent to --verbosity 1\\n\",\n      \"  --detailed            Displays detailed search results. Equivalent to\\n\",\n      \"                        --verbosity 3.\\n\",\n      \"  -m MAX, --max MAX     Maximum number of entries to return, default = 20\\n\",\n      \"  -q QUERY [QUERY ...], --query QUERY [QUERY ...]\\n\",\n      \"                        Main query string. Note that if no query is supplied,\\n\",\n      \"                        at least one of the following flags must be present:\\n\",\n      \"  -A ACCESSION, --accession ACCESSION\\n\",\n      \"                        Accession number\\n\",\n      \"  -O ORGANISM [ORGANISM ...], --organism ORGANISM [ORGANISM ...]\\n\",\n      \"                        Scientific name of the sample organism\\n\",\n      \"  -L {SINGLE,PAIRED}, --layout {SINGLE,PAIRED}\\n\",\n      \"                        Library layout. Accepts either SINGLE or PAIRED\\n\",\n      \"  -M MBASES, --mbases MBASES\\n\",\n      \"                        Size of the sample rounded to the nearest megabase\\n\",\n      \"  -D PUBLICATION_DATE, --publication-date PUBLICATION_DATE\\n\",\n      \"                        Publication date of the run in the format dd-mm-yyyy.\\n\",\n      \"                        If a date range is desired, enter the start date,\\n\",\n      \"                        followed by end date, separated by a colon ':'.\\n\",\n      \"                        Example: 01-01-2010:31-12-2010\\n\",\n      \"  -P PLATFORM [PLATFORM ...], --platform PLATFORM [PLATFORM ...]\\n\",\n      \"                        Sequencing platform\\n\",\n      \"  -E SELECTION [SELECTION ...], --selection SELECTION [SELECTION ...]\\n\",\n      \"                        Library selection\\n\",\n      \"  -C SOURCE [SOURCE ...], --source SOURCE [SOURCE ...]\\n\",\n      \"                        Library source\\n\",\n      \"  -S STRATEGY [STRATEGY ...], --strategy STRATEGY [STRATEGY ...]\\n\",\n      \"                        Library preparation strategy\\n\",\n      \"  -T TITLE [TITLE ...], --title TITLE [TITLE ...]\\n\",\n      \"                        Experiment title\\n\",\n      \"  -I, --geo-info        Displays information on how to query GEO DataSets via\\n\",\n      \"                        'pysradb search --db geo ...', including accepted\\n\",\n      \"                        inputs for -G/--geo-query, -Y/--geo-dataset-type and\\n\",\n      \"                        -Z/--geo-entry-type.\\n\",\n      \"  -G GEO_QUERY [GEO_QUERY ...], --geo-query GEO_QUERY [GEO_QUERY ...]\\n\",\n      \"                        Main query string for GEO DataSet. This flag is only\\n\",\n      \"                        used when db is set to be geo.Please refer to 'pysradb\\n\",\n      \"                        search --geo-info' for more details.\\n\",\n      \"  -Y GEO_DATASET_TYPE [GEO_DATASET_TYPE ...], --geo-dataset-type GEO_DATASET_TYPE [GEO_DATASET_TYPE ...]\\n\",\n      \"                        GEO DataSet Type. This flag is only used when --db is\\n\",\n      \"                        set to be geo.Please refer to 'pysradb search --geo-\\n\",\n      \"                        info' for more details.\\n\",\n      \"  -Z GEO_ENTRY_TYPE [GEO_ENTRY_TYPE ...], --geo-entry-type GEO_ENTRY_TYPE [GEO_ENTRY_TYPE ...]\\n\",\n      \"                        GEO Entry Type. This flag is only used when --db is\\n\",\n      \"                        set to be geo.Please refer to 'pysradb search --geo-\\n\",\n      \"                        info' for more details.\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb search -h\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 2. Searching for 5 illumina sequences related to the covid-19 pandemic on ENA, using the terminal:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 9,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"study_accession\\texperiment_accession\\texperiment_title\\tdescription\\ttax_id\\tscientific_name\\tlibrary_strategy\\tlibrary_source\\tlibrary_selection\\tsample_accession\\tsample_title\\tinstrument_model\\trun_accession\\tread_count\\tbase_count\\n\",\n      \"PRJEB65477\\tERX11285566\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\t9606\\tHomo sapiens\\tRNA-Seq\\tTRANSCRIPTOMIC\\tInverse rRNA\\tSAMEA114308724\\tSample 1\\tIllumina HiSeq 4000\\tERR11901279\\t131354572\\t19834540372\\n\",\n      \"PRJEB65477\\tERX11285567\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\t9606\\tHomo sapiens\\tRNA-Seq\\tTRANSCRIPTOMIC\\tInverse rRNA\\tSAMEA114308725\\tSample 10\\tIllumina HiSeq 4000\\tERR11901280\\t95225496\\t14379049896\\n\",\n      \"PRJEB65477\\tERX11285573\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\t9606\\tHomo sapiens\\tRNA-Seq\\tTRANSCRIPTOMIC\\tInverse rRNA\\tSAMEA114308731\\tSample 105\\tIllumina HiSeq 4000\\tERR11901286\\t128864216\\t19458496616\\n\",\n      \"PRJEB65477\\tERX11285574\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\t9606\\tHomo sapiens\\tRNA-Seq\\tTRANSCRIPTOMIC\\tInverse rRNA\\tSAMEA114308732\\tSample 106\\tIllumina HiSeq 4000\\tERR11901287\\t123505478\\t18649327178\\n\",\n      \"PRJEB65477\\tERX11285577\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\tIllumina HiSeq 4000 sequencing: Blood RNA sequencing was performed on a cohort of adults attending the Emergency Department with suspected infection who had subsequently-confirmed viral, bacterial, COVID19 and healthy controls\\t9606\\tHomo sapiens\\tRNA-Seq\\tTRANSCRIPTOMIC\\tInverse rRNA\\tSAMEA114308735\\tSample 109\\tIllumina HiSeq 4000\\tERR11901290\\t120866712\\t18250873512\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!pysradb search -q covid19 --platform illumina --db ena -m 5\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 3. Searching for illumina sequences related to the covid-19 pandemic on ENA, using the terminal, and saving the results in a nicely formatted text file:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 10,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"!pysradb search -q covid19 --db ena --saveto query.txt\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 4. Searching for illumina sequences related to the covid-19 pandemic on ENA, within python: (outputs a pandas dataframe)\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 11,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"   study_accession experiment_accession  \\\\\\n\",\n      \"0       PRJEB65477          ERX11285566   \\n\",\n      \"1       PRJEB65477          ERX11285567   \\n\",\n      \"2       PRJEB65477          ERX11285573   \\n\",\n      \"3       PRJEB65477          ERX11285574   \\n\",\n      \"4       PRJEB65477          ERX11285577   \\n\",\n      \"5       PRJEB65477          ERX11285583   \\n\",\n      \"6       PRJEB65477          ERX11285586   \\n\",\n      \"7       PRJEB65477          ERX11285592   \\n\",\n      \"8       PRJEB65477          ERX11285595   \\n\",\n      \"9       PRJEB65477          ERX11285599   \\n\",\n      \"10      PRJEB65477          ERX11285600   \\n\",\n      \"11      PRJEB65477          ERX11285605   \\n\",\n      \"12      PRJEB65477          ERX11285607   \\n\",\n      \"13      PRJEB65477          ERX11285609   \\n\",\n      \"14      PRJEB65477          ERX11285611   \\n\",\n      \"15      PRJEB65477          ERX11285620   \\n\",\n      \"16      PRJEB65477          ERX11285623   \\n\",\n      \"17      PRJEB65477          ERX11285625   \\n\",\n      \"18      PRJEB65477          ERX11285629   \\n\",\n      \"19      PRJEB65477          ERX11285633   \\n\",\n      \"\\n\",\n      \"                                     experiment_title  \\\\\\n\",\n      \"0   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"1   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"2   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"3   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"4   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"5   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"6   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"7   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"8   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"9   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"10  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"11  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"12  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"13  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"14  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"15  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"16  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"17  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"18  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"19  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   \\n\",\n      \"\\n\",\n      \"                                          description tax_id scientific_name  \\\\\\n\",\n      \"0   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"1   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"2   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"3   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"4   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"5   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"6   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"7   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"8   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"9   Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"10  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"11  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"12  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"13  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"14  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"15  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"16  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"17  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"18  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"19  Illumina HiSeq 4000 sequencing: Blood RNA sequ...   9606    Homo sapiens   \\n\",\n      \"\\n\",\n      \"   library_strategy  library_source library_selection sample_accession  \\\\\\n\",\n      \"0           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308724   \\n\",\n      \"1           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308725   \\n\",\n      \"2           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308731   \\n\",\n      \"3           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308732   \\n\",\n      \"4           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308735   \\n\",\n      \"5           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308741   \\n\",\n      \"6           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308744   \\n\",\n      \"7           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308750   \\n\",\n      \"8           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308753   \\n\",\n      \"9           RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308757   \\n\",\n      \"10          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308758   \\n\",\n      \"11          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308763   \\n\",\n      \"12          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308765   \\n\",\n      \"13          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308767   \\n\",\n      \"14          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308769   \\n\",\n      \"15          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308778   \\n\",\n      \"16          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308781   \\n\",\n      \"17          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308783   \\n\",\n      \"18          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308787   \\n\",\n      \"19          RNA-Seq  TRANSCRIPTOMIC      Inverse rRNA   SAMEA114308791   \\n\",\n      \"\\n\",\n      \"   sample_title     instrument_model run_accession read_count   base_count  \\n\",\n      \"0      Sample 1  Illumina HiSeq 4000   ERR11901279  131354572  19834540372  \\n\",\n      \"1     Sample 10  Illumina HiSeq 4000   ERR11901280   95225496  14379049896  \\n\",\n      \"2    Sample 105  Illumina HiSeq 4000   ERR11901286  128864216  19458496616  \\n\",\n      \"3    Sample 106  Illumina HiSeq 4000   ERR11901287  123505478  18649327178  \\n\",\n      \"4    Sample 109  Illumina HiSeq 4000   ERR11901290  120866712  18250873512  \\n\",\n      \"5    Sample 114  Illumina HiSeq 4000   ERR11901296  126581586  19113819486  \\n\",\n      \"6    Sample 117  Illumina HiSeq 4000   ERR11901299  126421026  19089574926  \\n\",\n      \"7    Sample 122  Illumina HiSeq 4000   ERR11901305  132194842  19961421142  \\n\",\n      \"8    Sample 125  Illumina HiSeq 4000   ERR11901308  128325648  19377172848  \\n\",\n      \"9    Sample 129  Illumina HiSeq 4000   ERR11901312  113973238  17209958938  \\n\",\n      \"10    Sample 13  Illumina HiSeq 4000   ERR11901313  103563334  15638063434  \\n\",\n      \"11   Sample 134  Illumina HiSeq 4000   ERR11901318  125759128  18989628328  \\n\",\n      \"12    Sample 15  Illumina HiSeq 4000   ERR11901320  102246922  15439285222  \\n\",\n      \"13    Sample 17  Illumina HiSeq 4000   ERR11901322  103868320  15684116320  \\n\",\n      \"14    Sample 19  Illumina HiSeq 4000   ERR11901324  102445734  15469305834  \\n\",\n      \"15    Sample 27  Illumina HiSeq 4000   ERR11901333  103177112  15579743912  \\n\",\n      \"16     Sample 3  Illumina HiSeq 4000   ERR11901336  104470270  15775010770  \\n\",\n      \"17    Sample 31  Illumina HiSeq 4000   ERR11901338   95555226  14428839126  \\n\",\n      \"18    Sample 35  Illumina HiSeq 4000   ERR11901342  104135584  15724473184  \\n\",\n      \"19    Sample 39  Illumina HiSeq 4000   ERR11901346  103208434  15584473534  \\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import EnaSearch\\n\",\n    \"\\n\",\n    \"instance = EnaSearch(2, 20, query=\\\"covid19\\\", platform=\\\"illumina\\\")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"print(df)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 5. More complex example:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 13,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>description</th>\\n\",\n       \"      <th>tax_id</th>\\n\",\n       \"      <th>scientific_name</th>\\n\",\n       \"      <th>library_strategy</th>\\n\",\n       \"      <th>library_source</th>\\n\",\n       \"      <th>library_selection</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>tag</th>\\n\",\n       \"      <th>target_gene</th>\\n\",\n       \"      <th>tax_lineage</th>\\n\",\n       \"      <th>taxonomic_classification</th>\\n\",\n       \"      <th>taxonomic_identity_marker</th>\\n\",\n       \"      <th>temperature</th>\\n\",\n       \"      <th>tissue_lib</th>\\n\",\n       \"      <th>tissue_type</th>\\n\",\n       \"      <th>transposase_protocol</th>\\n\",\n       \"      <th>variety</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>PRJNA549801</td>\\n\",\n       \"      <td>SRX10904916</td>\\n\",\n       \"      <td>Illumina MiSeq sequencing: E. coli library mad...</td>\\n\",\n       \"      <td>Illumina MiSeq sequencing: E. coli library mad...</td>\\n\",\n       \"      <td>562</td>\\n\",\n       \"      <td>Escherichia coli</td>\\n\",\n       \"      <td>WGS</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SAMN11656391</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>env_tax;env_tax:freshwater;env_tax:terrestrial...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1;131567;2;3379134;1224;1236;91347;543;561;562</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>PRJNA530580</td>\\n\",\n       \"      <td>SRX5658689</td>\\n\",\n       \"      <td>Illumina MiSeq sequencing: Sequencing of Esche...</td>\\n\",\n       \"      <td>Illumina MiSeq sequencing: Sequencing of Esche...</td>\\n\",\n       \"      <td>562</td>\\n\",\n       \"      <td>Escherichia coli</td>\\n\",\n       \"      <td>WGS</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SAMN11319482</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>env_tax;env_tax:freshwater;env_tax:terrestrial...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1;131567;2;3379134;1224;1236;91347;543;561;562</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>PRJEB34285</td>\\n\",\n       \"      <td>ERX3552102</td>\\n\",\n       \"      <td>Illumina MiSeq paired end sequencing: Raw read...</td>\\n\",\n       \"      <td>Illumina MiSeq paired end sequencing: Raw read...</td>\\n\",\n       \"      <td>562</td>\\n\",\n       \"      <td>Escherichia coli</td>\\n\",\n       \"      <td>WGS</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>RANDOM</td>\\n\",\n       \"      <td>SAMEA5957573</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>env_tax;env_tax:freshwater;env_tax:terrestrial...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1;131567;2;3379134;1224;1236;91347;543;561;562</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>3 rows × 192 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"  study_accession experiment_accession  \\\\\\n\",\n       \"0     PRJNA549801          SRX10904916   \\n\",\n       \"1     PRJNA530580           SRX5658689   \\n\",\n       \"2      PRJEB34285           ERX3552102   \\n\",\n       \"\\n\",\n       \"                                    experiment_title  \\\\\\n\",\n       \"0  Illumina MiSeq sequencing: E. coli library mad...   \\n\",\n       \"1  Illumina MiSeq sequencing: Sequencing of Esche...   \\n\",\n       \"2  Illumina MiSeq paired end sequencing: Raw read...   \\n\",\n       \"\\n\",\n       \"                                         description tax_id   scientific_name  \\\\\\n\",\n       \"0  Illumina MiSeq sequencing: E. coli library mad...    562  Escherichia coli   \\n\",\n       \"1  Illumina MiSeq sequencing: Sequencing of Esche...    562  Escherichia coli   \\n\",\n       \"2  Illumina MiSeq paired end sequencing: Raw read...    562  Escherichia coli   \\n\",\n       \"\\n\",\n       \"  library_strategy library_source library_selection sample_accession  ...  \\\\\\n\",\n       \"0              WGS        GENOMIC            RANDOM     SAMN11656391  ...   \\n\",\n       \"1              WGS        GENOMIC            RANDOM     SAMN11319482  ...   \\n\",\n       \"2              WGS        GENOMIC            RANDOM     SAMEA5957573  ...   \\n\",\n       \"\\n\",\n       \"                                                 tag target_gene  \\\\\\n\",\n       \"0  env_tax;env_tax:freshwater;env_tax:terrestrial...        <NA>   \\n\",\n       \"1  env_tax;env_tax:freshwater;env_tax:terrestrial...        <NA>   \\n\",\n       \"2  env_tax;env_tax:freshwater;env_tax:terrestrial...        <NA>   \\n\",\n       \"\\n\",\n       \"                                      tax_lineage taxonomic_classification  \\\\\\n\",\n       \"0  1;131567;2;3379134;1224;1236;91347;543;561;562                     <NA>   \\n\",\n       \"1  1;131567;2;3379134;1224;1236;91347;543;561;562                     <NA>   \\n\",\n       \"2  1;131567;2;3379134;1224;1236;91347;543;561;562                     <NA>   \\n\",\n       \"\\n\",\n       \"  taxonomic_identity_marker temperature tissue_lib tissue_type  \\\\\\n\",\n       \"0                      <NA>        <NA>       <NA>        <NA>   \\n\",\n       \"1                      <NA>        <NA>       <NA>        <NA>   \\n\",\n       \"2                      <NA>        <NA>       <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"  transposase_protocol variety  \\n\",\n       \"0                 <NA>    <NA>  \\n\",\n       \"1                 <NA>    <NA>  \\n\",\n       \"2                 <NA>    <NA>  \\n\",\n       \"\\n\",\n       \"[3 rows x 192 columns]\"\n      ]\n     },\n     \"execution_count\": 13,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"from pysradb.search import EnaSearch\\n\",\n    \"\\n\",\n    \"instance = EnaSearch(\\n\",\n    \"    3,\\n\",\n    \"    100000,\\n\",\n    \"    organism=\\\"Escherichia coli\\\",\\n\",\n    \"    layout=\\\"Paired\\\",\\n\",\n    \"    mbases=10,\\n\",\n    \"    publication_date=\\\"01-01-2019:31-12-2021\\\",\\n\",\n    \"    platform=\\\"Illumina\\\",\\n\",\n    \"    selection=\\\"random\\\",\\n\",\n    \"    source=\\\"Genomic\\\",\\n\",\n    \"    strategy=\\\"WGS\\\",\\n\",\n    \")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"sorted(df.columns)\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 16,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 100/100 [00:02<00:00, 44.88it/s]\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>sample_taxon_id</th>\\n\",\n       \"      <th>sample_scientific_name</th>\\n\",\n       \"      <th>experiment_library_strategy</th>\\n\",\n       \"      <th>experiment_library_source</th>\\n\",\n       \"      <th>experiment_library_selection</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>sample_alias</th>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <th>study_link_1_type</th>\\n\",\n       \"      <th>study_link_1_value_1</th>\\n\",\n       \"      <th>study_link_1_value_2</th>\\n\",\n       \"      <th>study_study_abstract</th>\\n\",\n       \"      <th>study_study_title</th>\\n\",\n       \"      <th>study_study_type_existing_study_type</th>\\n\",\n       \"      <th>submission_accession</th>\\n\",\n       \"      <th>submission_alias</th>\\n\",\n       \"      <th>submission_center_name</th>\\n\",\n       \"      <th>submission_lab_name</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP531137</td>\\n\",\n       \"      <td>SRX25997822</td>\\n\",\n       \"      <td>GSM8501051: HEK293, Prm1 negative, Replicate 3...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Hi-C</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>other</td>\\n\",\n       \"      <td>SRS22571584</td>\\n\",\n       \"      <td>GSM8501051</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Although the spatial organization of the genom...</td>\\n\",\n       \"      <td>Large-scale manipulation of radial positioning...</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1964865</td>\\n\",\n       \"      <td>SUB14711595</td>\\n\",\n       \"      <td>Technion - Israel Institute of Technology</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP531137</td>\\n\",\n       \"      <td>SRX25997821</td>\\n\",\n       \"      <td>GSM8501050: HEK293, Prm1 negative, Replicate 2...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Hi-C</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>other</td>\\n\",\n       \"      <td>SRS22571583</td>\\n\",\n       \"      <td>GSM8501050</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Although the spatial organization of the genom...</td>\\n\",\n       \"      <td>Large-scale manipulation of radial positioning...</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1964865</td>\\n\",\n       \"      <td>SUB14711595</td>\\n\",\n       \"      <td>Technion - Israel Institute of Technology</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP531137</td>\\n\",\n       \"      <td>SRX25997820</td>\\n\",\n       \"      <td>GSM8501049: HEK293, Prm1 negative, Replicate 1...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Hi-C</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>other</td>\\n\",\n       \"      <td>SRS22571582</td>\\n\",\n       \"      <td>GSM8501049</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Although the spatial organization of the genom...</td>\\n\",\n       \"      <td>Large-scale manipulation of radial positioning...</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1964865</td>\\n\",\n       \"      <td>SUB14711595</td>\\n\",\n       \"      <td>Technion - Israel Institute of Technology</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP531137</td>\\n\",\n       \"      <td>SRX25997819</td>\\n\",\n       \"      <td>GSM8501048: HEK293, Prm1 positive DAPI low, Hi...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Hi-C</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>other</td>\\n\",\n       \"      <td>SRS22571581</td>\\n\",\n       \"      <td>GSM8501048</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Although the spatial organization of the genom...</td>\\n\",\n       \"      <td>Large-scale manipulation of radial positioning...</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1964865</td>\\n\",\n       \"      <td>SUB14711595</td>\\n\",\n       \"      <td>Technion - Israel Institute of Technology</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP531137</td>\\n\",\n       \"      <td>SRX25997818</td>\\n\",\n       \"      <td>GSM8501047: HEK293, Prm1 positive DAPI high, H...</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>Hi-C</td>\\n\",\n       \"      <td>GENOMIC</td>\\n\",\n       \"      <td>other</td>\\n\",\n       \"      <td>SRS22571580</td>\\n\",\n       \"      <td>GSM8501047</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Although the spatial organization of the genom...</td>\\n\",\n       \"      <td>Large-scale manipulation of radial positioning...</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1964865</td>\\n\",\n       \"      <td>SUB14711595</td>\\n\",\n       \"      <td>Technion - Israel Institute of Technology</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>95</th>\\n\",\n       \"      <td>SRP530052</td>\\n\",\n       \"      <td>SRX25934604</td>\\n\",\n       \"      <td>GSM8493072: HSS-3; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS22520997</td>\\n\",\n       \"      <td>GSM8493072</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: pubmed</td>\\n\",\n       \"      <td>ID: 39752487</td>\\n\",\n       \"      <td>Fluid shear stress (FSS) from blood flow sense...</td>\\n\",\n       \"      <td>cSTAR analysis identifies endothelial cell cyc...</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA1960858</td>\\n\",\n       \"      <td>SUB14701816</td>\\n\",\n       \"      <td>Systems Biology Ireland, University College Du...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>96</th>\\n\",\n       \"      <td>SRP530052</td>\\n\",\n       \"      <td>SRX25934603</td>\\n\",\n       \"      <td>GSM8493071: HSS-2; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS22520996</td>\\n\",\n       \"      <td>GSM8493071</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: pubmed</td>\\n\",\n       \"      <td>ID: 39752487</td>\\n\",\n       \"      <td>Fluid shear stress (FSS) from blood flow sense...</td>\\n\",\n       \"      <td>cSTAR analysis identifies endothelial cell cyc...</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA1960858</td>\\n\",\n       \"      <td>SUB14701816</td>\\n\",\n       \"      <td>Systems Biology Ireland, University College Du...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>97</th>\\n\",\n       \"      <td>SRP530052</td>\\n\",\n       \"      <td>SRX25934602</td>\\n\",\n       \"      <td>GSM8493070: HSS-1; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS22520995</td>\\n\",\n       \"      <td>GSM8493070</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: pubmed</td>\\n\",\n       \"      <td>ID: 39752487</td>\\n\",\n       \"      <td>Fluid shear stress (FSS) from blood flow sense...</td>\\n\",\n       \"      <td>cSTAR analysis identifies endothelial cell cyc...</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA1960858</td>\\n\",\n       \"      <td>SUB14701816</td>\\n\",\n       \"      <td>Systems Biology Ireland, University College Du...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>98</th>\\n\",\n       \"      <td>SRP529928</td>\\n\",\n       \"      <td>SRX25928352</td>\\n\",\n       \"      <td>GSM8492057: NC1 group2; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS22515729</td>\\n\",\n       \"      <td>GSM8492057</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Adrenoleukodystrophy (ALD) is a rare X-linked ...</td>\\n\",\n       \"      <td>Transcriptomic Analysis of Identical Twins wit...</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA1960558</td>\\n\",\n       \"      <td>SUB14700372</td>\\n\",\n       \"      <td>Southwest Hospital, Army Medical University (T...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>99</th>\\n\",\n       \"      <td>SRP529928</td>\\n\",\n       \"      <td>SRX25928351</td>\\n\",\n       \"      <td>GSM8492056: NC1 group1; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS22515728</td>\\n\",\n       \"      <td>GSM8492056</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Adrenoleukodystrophy (ALD) is a rare X-linked ...</td>\\n\",\n       \"      <td>Transcriptomic Analysis of Identical Twins wit...</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA1960558</td>\\n\",\n       \"      <td>SUB14700372</td>\\n\",\n       \"      <td>Southwest Hospital, Army Medical University (T...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>100 rows × 644 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   study_accession experiment_accession  \\\\\\n\",\n       \"0        SRP531137          SRX25997822   \\n\",\n       \"1        SRP531137          SRX25997821   \\n\",\n       \"2        SRP531137          SRX25997820   \\n\",\n       \"3        SRP531137          SRX25997819   \\n\",\n       \"4        SRP531137          SRX25997818   \\n\",\n       \"..             ...                  ...   \\n\",\n       \"95       SRP530052          SRX25934604   \\n\",\n       \"96       SRP530052          SRX25934603   \\n\",\n       \"97       SRP530052          SRX25934602   \\n\",\n       \"98       SRP529928          SRX25928352   \\n\",\n       \"99       SRP529928          SRX25928351   \\n\",\n       \"\\n\",\n       \"                                     experiment_title sample_taxon_id  \\\\\\n\",\n       \"0   GSM8501051: HEK293, Prm1 negative, Replicate 3...            9606   \\n\",\n       \"1   GSM8501050: HEK293, Prm1 negative, Replicate 2...            9606   \\n\",\n       \"2   GSM8501049: HEK293, Prm1 negative, Replicate 1...            9606   \\n\",\n       \"3   GSM8501048: HEK293, Prm1 positive DAPI low, Hi...            9606   \\n\",\n       \"4   GSM8501047: HEK293, Prm1 positive DAPI high, H...            9606   \\n\",\n       \"..                                                ...             ...   \\n\",\n       \"95           GSM8493072: HSS-3; Homo sapiens; RNA-Seq            9606   \\n\",\n       \"96           GSM8493071: HSS-2; Homo sapiens; RNA-Seq            9606   \\n\",\n       \"97           GSM8493070: HSS-1; Homo sapiens; RNA-Seq            9606   \\n\",\n       \"98      GSM8492057: NC1 group2; Homo sapiens; RNA-Seq            9606   \\n\",\n       \"99      GSM8492056: NC1 group1; Homo sapiens; RNA-Seq            9606   \\n\",\n       \"\\n\",\n       \"   sample_scientific_name experiment_library_strategy  \\\\\\n\",\n       \"0            Homo sapiens                        Hi-C   \\n\",\n       \"1            Homo sapiens                        Hi-C   \\n\",\n       \"2            Homo sapiens                        Hi-C   \\n\",\n       \"3            Homo sapiens                        Hi-C   \\n\",\n       \"4            Homo sapiens                        Hi-C   \\n\",\n       \"..                    ...                         ...   \\n\",\n       \"95           Homo sapiens                     RNA-Seq   \\n\",\n       \"96           Homo sapiens                     RNA-Seq   \\n\",\n       \"97           Homo sapiens                     RNA-Seq   \\n\",\n       \"98           Homo sapiens                     RNA-Seq   \\n\",\n       \"99           Homo sapiens                     RNA-Seq   \\n\",\n       \"\\n\",\n       \"   experiment_library_source experiment_library_selection sample_accession  \\\\\\n\",\n       \"0                    GENOMIC                        other      SRS22571584   \\n\",\n       \"1                    GENOMIC                        other      SRS22571583   \\n\",\n       \"2                    GENOMIC                        other      SRS22571582   \\n\",\n       \"3                    GENOMIC                        other      SRS22571581   \\n\",\n       \"4                    GENOMIC                        other      SRS22571580   \\n\",\n       \"..                       ...                          ...              ...   \\n\",\n       \"95            TRANSCRIPTOMIC                         cDNA      SRS22520997   \\n\",\n       \"96            TRANSCRIPTOMIC                         cDNA      SRS22520996   \\n\",\n       \"97            TRANSCRIPTOMIC                         cDNA      SRS22520995   \\n\",\n       \"98            TRANSCRIPTOMIC                         cDNA      SRS22515729   \\n\",\n       \"99            TRANSCRIPTOMIC                         cDNA      SRS22515728   \\n\",\n       \"\\n\",\n       \"   sample_alias  ... study_link_1_type study_link_1_value_1  \\\\\\n\",\n       \"0    GSM8501051  ...              <NA>                 <NA>   \\n\",\n       \"1    GSM8501050  ...              <NA>                 <NA>   \\n\",\n       \"2    GSM8501049  ...              <NA>                 <NA>   \\n\",\n       \"3    GSM8501048  ...              <NA>                 <NA>   \\n\",\n       \"4    GSM8501047  ...              <NA>                 <NA>   \\n\",\n       \"..          ...  ...               ...                  ...   \\n\",\n       \"95   GSM8493072  ...         XREF_LINK           DB: pubmed   \\n\",\n       \"96   GSM8493071  ...         XREF_LINK           DB: pubmed   \\n\",\n       \"97   GSM8493070  ...         XREF_LINK           DB: pubmed   \\n\",\n       \"98   GSM8492057  ...              <NA>                 <NA>   \\n\",\n       \"99   GSM8492056  ...              <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"   study_link_1_value_2                               study_study_abstract  \\\\\\n\",\n       \"0                  <NA>  Although the spatial organization of the genom...   \\n\",\n       \"1                  <NA>  Although the spatial organization of the genom...   \\n\",\n       \"2                  <NA>  Although the spatial organization of the genom...   \\n\",\n       \"3                  <NA>  Although the spatial organization of the genom...   \\n\",\n       \"4                  <NA>  Although the spatial organization of the genom...   \\n\",\n       \"..                  ...                                                ...   \\n\",\n       \"95         ID: 39752487  Fluid shear stress (FSS) from blood flow sense...   \\n\",\n       \"96         ID: 39752487  Fluid shear stress (FSS) from blood flow sense...   \\n\",\n       \"97         ID: 39752487  Fluid shear stress (FSS) from blood flow sense...   \\n\",\n       \"98                 <NA>  Adrenoleukodystrophy (ALD) is a rare X-linked ...   \\n\",\n       \"99                 <NA>  Adrenoleukodystrophy (ALD) is a rare X-linked ...   \\n\",\n       \"\\n\",\n       \"                                    study_study_title  \\\\\\n\",\n       \"0   Large-scale manipulation of radial positioning...   \\n\",\n       \"1   Large-scale manipulation of radial positioning...   \\n\",\n       \"2   Large-scale manipulation of radial positioning...   \\n\",\n       \"3   Large-scale manipulation of radial positioning...   \\n\",\n       \"4   Large-scale manipulation of radial positioning...   \\n\",\n       \"..                                                ...   \\n\",\n       \"95  cSTAR analysis identifies endothelial cell cyc...   \\n\",\n       \"96  cSTAR analysis identifies endothelial cell cyc...   \\n\",\n       \"97  cSTAR analysis identifies endothelial cell cyc...   \\n\",\n       \"98  Transcriptomic Analysis of Identical Twins wit...   \\n\",\n       \"99  Transcriptomic Analysis of Identical Twins wit...   \\n\",\n       \"\\n\",\n       \"   study_study_type_existing_study_type submission_accession submission_alias  \\\\\\n\",\n       \"0                                 Other           SRA1964865      SUB14711595   \\n\",\n       \"1                                 Other           SRA1964865      SUB14711595   \\n\",\n       \"2                                 Other           SRA1964865      SUB14711595   \\n\",\n       \"3                                 Other           SRA1964865      SUB14711595   \\n\",\n       \"4                                 Other           SRA1964865      SUB14711595   \\n\",\n       \"..                                  ...                  ...              ...   \\n\",\n       \"95               Transcriptome Analysis           SRA1960858      SUB14701816   \\n\",\n       \"96               Transcriptome Analysis           SRA1960858      SUB14701816   \\n\",\n       \"97               Transcriptome Analysis           SRA1960858      SUB14701816   \\n\",\n       \"98               Transcriptome Analysis           SRA1960558      SUB14700372   \\n\",\n       \"99               Transcriptome Analysis           SRA1960558      SUB14700372   \\n\",\n       \"\\n\",\n       \"                               submission_center_name submission_lab_name  \\n\",\n       \"0           Technion - Israel Institute of Technology                <NA>  \\n\",\n       \"1           Technion - Israel Institute of Technology                <NA>  \\n\",\n       \"2           Technion - Israel Institute of Technology                <NA>  \\n\",\n       \"3           Technion - Israel Institute of Technology                <NA>  \\n\",\n       \"4           Technion - Israel Institute of Technology                <NA>  \\n\",\n       \"..                                                ...                 ...  \\n\",\n       \"95  Systems Biology Ireland, University College Du...                <NA>  \\n\",\n       \"96  Systems Biology Ireland, University College Du...                <NA>  \\n\",\n       \"97  Systems Biology Ireland, University College Du...                <NA>  \\n\",\n       \"98  Southwest Hospital, Army Medical University (T...                <NA>  \\n\",\n       \"99  Southwest Hospital, Army Medical University (T...                <NA>  \\n\",\n       \"\\n\",\n       \"[100 rows x 644 columns]\"\n      ]\n     },\n     \"execution_count\": 16,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# https://github.com/saketkc/pysradb/issues/221\\n\",\n    \"instance = GeoSearch(\\n\",\n    \"    publication_date=\\\"05-09-2024:06-09-2024\\\", return_max=100, verbosity=3\\n\",\n    \")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 17,\n   \"metadata\": {},\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1000/1000 [00:48<00:00, 20.72it/s]\\n\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"['GSE276554' 'GSE276553' 'GSE267301' 'GSE276379' 'GSE276473' 'GSE276365'\\n\",\n      \" 'GSE276447' 'GSE276438' 'GSE219269' 'GSE276372' 'GSE276338' 'GSE276337'\\n\",\n      \" 'GSE276206' 'GSE276309' 'GSE276304' 'GSE276245' 'GSE276204' 'GSE276185'\\n\",\n      \" 'GSE276195' 'GSE276192' 'GSE276153' 'GSE276130' 'GSE276122' 'GSE276065'\\n\",\n      \" 'GSE276058' 'GSE276038' 'GSE276037' 'GSE275962' 'GSE275896' 'GSE275863'\\n\",\n      \" 'GSE275777' 'GSE275778' 'GSE275571' 'GSE253407' 'GSE275211' 'GSE274586'\\n\",\n      \" 'GSE274408' 'GSE273907' 'GSE273844' 'GSE273813' 'GSE253145' 'GSE272793'\\n\",\n      \" 'GSE272635' 'GSE272394' 'GSE247707' 'GSE247706' 'GSE272252' 'GSE271996'\\n\",\n      \" 'GSE271746' 'GSE271667' 'GSE271653' 'GSE264193' 'GSE245033' 'GSE268837'\\n\",\n      \" 'GSE267343' 'GSE267342' 'GSE266976' 'GSE266471' 'GSE264212' 'GSE264012'\\n\",\n      \" 'GSE263804' 'GSE263798' 'GSE263549' 'GSE263414' 'GSE263441' 'GSE262699'\\n\",\n      \" 'GSE262282' 'GSE262272' 'GSE262127' 'GSE262125' 'GSE262126']\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/plain\": [\n       \"np.int64(0)\"\n      ]\n     },\n     \"execution_count\": 17,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"instance = GeoSearch(\\n\",\n    \"    publication_date=\\\"04-09-2024:06-09-2024\\\", return_max=1000, verbosity=3\\n\",\n    \")\\n\",\n    \"instance.search()\\n\",\n    \"df = instance.get_df()\\n\",\n    \"print(df[\\\"study_alias\\\"].unique())\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"<br>\\n\",\n    \"\\n\",\n    \"##### 6. Corresponding terminal command example, with max set to 20:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"!pysradb search --db ena -m 20 -v 3 --organism Escherichia coli --layout Paired --mbases 100 --publication-date 01-01-2019:31-12-2019 --platform illumina --selection random --source Genomic --strategy wgs\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": []\n  }\n ],\n \"metadata\": {\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.10.18\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/08.PMC_DOI_Identifiers.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/08.PMC_DOI_Identifiers.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"# Extract Identifiers from PMC/DOI\\n\",\n    \"\\n\",\n    \"This notebook shows how to extract SRA identifiers from PubMed Central articles and DOI references.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Extracting Database Identifiers from Literature (PMC/DOI)\\n\",\n    \"\\n\",\n    \"This notebook demonstrates how to extract database identifiers (GSE, PRJNA, SRP, SRR, SRX, SRS) from:\\n\",\n    \"- PubMed Central (PMC) articles\\n\",\n    \"- PubMed IDs (PMIDs)\\n\",\n    \"- Digital Object Identifiers (DOIs)\\n\",\n    \"\\n\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Setup\\n\",\n    \"\\n\",\n    \"First, let's import pysradb and create a connection:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:25:40.819732Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:25:40.819432Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:25:41.414646Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:25:41.414407Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:25:40.819709Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/Users/saket/github/pysradb/pysradb/utils.py:14: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb.sraweb import SRAweb\\n\",\n    \"import pandas as pd\\n\",\n    \"\\n\",\n    \"db = SRAweb()\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 1: Extract Identifiers from PMID\\n\",\n    \"\\n\",\n    \"Let's extract all database identifiers from a PubMed article using its PMID:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:25:41.415030Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:25:41.414918Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:25:52.365812Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:25:52.365164Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:25:41.415021Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Identifiers found for PMID 39528918:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"      <th>prjna_ids</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"      <th>srr_ids</th>\\n\",\n       \"      <th>srx_ids</th>\\n\",\n       \"      <th>srs_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>39528918</td>\\n\",\n       \"      <td>PMC11552371</td>\\n\",\n       \"      <td>GSE253406</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>SRP484103</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"       pmid       pmc_id    gse_ids prjna_ids    srp_ids srr_ids srx_ids  \\\\\\n\",\n       \"0  39528918  PMC11552371  GSE253406      None  SRP484103    None    None   \\n\",\n       \"\\n\",\n       \"  srs_ids  \\n\",\n       \"0    None  \"\n      ]\n     },\n     \"execution_count\": 2,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Extract all identifiers from PMID 39528918\\n\",\n    \"pmid = \\\"39528918\\\"\\n\",\n    \"df = db.pmid_to_identifiers(pmid)\\n\",\n    \"\\n\",\n    \"print(f\\\"Identifiers found for PMID {pmid}:\\\")\\n\",\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 2: Get Only GSE IDs from PMID\\n\",\n    \"\\n\",\n    \"Sometimes you only need specific identifier types:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:25:52.367068Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:25:52.366478Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:02.906611Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:02.904561Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:25:52.367035Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"GSE identifiers:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>39528918</td>\\n\",\n       \"      <td>PMC11552371</td>\\n\",\n       \"      <td>GSE253406</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"       pmid       pmc_id    gse_ids\\n\",\n       \"0  39528918  PMC11552371  GSE253406\"\n      ]\n     },\n     \"execution_count\": 3,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Get only GSE identifiers\\n\",\n    \"gse_df = db.pmid_to_gse(\\\"39528918\\\")\\n\",\n    \"print(\\\"GSE identifiers:\\\")\\n\",\n    \"gse_df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 3: Get Only SRP IDs from PMID\\n\",\n    \"\\n\",\n    \"**Important:** Even if the paper only mentions GSE IDs, pysradb will automatically convert them to SRP!\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:02.908476Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:02.908077Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:13.757381Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:13.756733Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:02.908448Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"SRP identifiers (auto-converted from GSE if needed):\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>39528918</td>\\n\",\n       \"      <td>PMC11552371</td>\\n\",\n       \"      <td>SRP484103</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"       pmid       pmc_id    srp_ids\\n\",\n       \"0  39528918  PMC11552371  SRP484103\"\n      ]\n     },\n     \"execution_count\": 4,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Get only SRP identifiers\\n\",\n    \"# This works even if the paper only mentions GSE253406!\\n\",\n    \"srp_df = db.pmid_to_srp(\\\"39528918\\\")\\n\",\n    \"print(\\\"SRP identifiers (auto-converted from GSE if needed):\\\")\\n\",\n    \"srp_df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 4: Process Multiple PMIDs\\n\",\n    \"\\n\",\n    \"You can batch process multiple PMIDs at once:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:13.758482Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:13.758266Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:29.005645Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:29.004516Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:13.758460Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Identifiers from 2 PMIDs:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"      <th>prjna_ids</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"      <th>srr_ids</th>\\n\",\n       \"      <th>srx_ids</th>\\n\",\n       \"      <th>srs_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>39528918</td>\\n\",\n       \"      <td>PMC11552371</td>\\n\",\n       \"      <td>GSE253406</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>SRP484103</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>27373336</td>\\n\",\n       \"      <td>PMC4958508</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"       pmid       pmc_id    gse_ids prjna_ids    srp_ids srr_ids srx_ids  \\\\\\n\",\n       \"0  39528918  PMC11552371  GSE253406      None  SRP484103    None    None   \\n\",\n       \"1  27373336   PMC4958508       None      None       None    None    None   \\n\",\n       \"\\n\",\n       \"  srs_ids  \\n\",\n       \"0    None  \\n\",\n       \"1    None  \"\n      ]\n     },\n     \"execution_count\": 5,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Process multiple PMIDs\\n\",\n    \"pmids = [\\\"39528918\\\", \\\"27373336\\\"]\\n\",\n    \"df_multiple = db.pmid_to_identifiers(pmids)\\n\",\n    \"\\n\",\n    \"print(f\\\"Identifiers from {len(pmids)} PMIDs:\\\")\\n\",\n    \"df_multiple\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 5: Extract from PMC ID\\n\",\n    \"\\n\",\n    \"If you have a PMC ID directly, you can use it:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 6,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:29.009263Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:29.008979Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:30.954276Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:30.953720Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:29.009240Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Identifiers from PMC article:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"      <th>prjna_ids</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"      <th>srr_ids</th>\\n\",\n       \"      <th>srx_ids</th>\\n\",\n       \"      <th>srs_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>PMC10802650</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"        pmc_id gse_ids prjna_ids srp_ids srr_ids srx_ids srs_ids\\n\",\n       \"0  PMC10802650    <NA>      <NA>    <NA>    <NA>    <NA>    <NA>\"\n      ]\n     },\n     \"execution_count\": 6,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Extract from PMC ID\\n\",\n    \"pmc_df = db.pmc_to_identifiers(\\\"PMC10802650\\\")\\n\",\n    \"print(\\\"Identifiers from PMC article:\\\")\\n\",\n    \"pmc_df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 6: Extract from DOI\\n\",\n    \"\\n\",\n    \"You can also extract identifiers directly from a DOI:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:30.955170Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:30.954888Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:37.713908Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:37.713227Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:30.955148Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Identifiers from DOI 10.12688/f1000research.18676.1:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>doi</th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"      <th>prjna_ids</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"      <th>srr_ids</th>\\n\",\n       \"      <th>srx_ids</th>\\n\",\n       \"      <th>srs_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>10.12688/f1000research.18676.1</td>\\n\",\n       \"      <td>31114675</td>\\n\",\n       \"      <td>PMC6505635</td>\\n\",\n       \"      <td>GSE100007,GSE24355,GSE25842,GSE41637</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>SRP000941,SRP003870,SRP005378,SRP010679,SRP109126</td>\\n\",\n       \"      <td>SRR403882,SRR403883,SRR403884,SRR403885,SRR403...</td>\\n\",\n       \"      <td>SRX118285,SRX118286,SRX118287,SRX118288,SRX118...</td>\\n\",\n       \"      <td>SRS2282390,SRS2282391,SRS2282392,SRS2282393,SR...</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"                              doi      pmid      pmc_id  \\\\\\n\",\n       \"0  10.12688/f1000research.18676.1  31114675  PMC6505635   \\n\",\n       \"\\n\",\n       \"                                gse_ids prjna_ids  \\\\\\n\",\n       \"0  GSE100007,GSE24355,GSE25842,GSE41637      None   \\n\",\n       \"\\n\",\n       \"                                             srp_ids  \\\\\\n\",\n       \"0  SRP000941,SRP003870,SRP005378,SRP010679,SRP109126   \\n\",\n       \"\\n\",\n       \"                                             srr_ids  \\\\\\n\",\n       \"0  SRR403882,SRR403883,SRR403884,SRR403885,SRR403...   \\n\",\n       \"\\n\",\n       \"                                             srx_ids  \\\\\\n\",\n       \"0  SRX118285,SRX118286,SRX118287,SRX118288,SRX118...   \\n\",\n       \"\\n\",\n       \"                                             srs_ids  \\n\",\n       \"0  SRS2282390,SRS2282391,SRS2282392,SRS2282393,SR...  \"\n      ]\n     },\n     \"execution_count\": 7,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Extract from DOI\\n\",\n    \"doi = \\\"10.12688/f1000research.18676.1\\\"\\n\",\n    \"doi_df = db.doi_to_identifiers(doi)\\n\",\n    \"\\n\",\n    \"print(f\\\"Identifiers from DOI {doi}:\\\")\\n\",\n    \"doi_df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 7: Get GSE from DOI\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:37.714861Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:37.714634Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:44.104644Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:44.104085Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:37.714839Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"GSE identifiers from DOI:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>doi</th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>10.12688/f1000research.18676.1</td>\\n\",\n       \"      <td>31114675</td>\\n\",\n       \"      <td>PMC6505635</td>\\n\",\n       \"      <td>GSE100007,GSE24355,GSE25842,GSE41637</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"                              doi      pmid      pmc_id  \\\\\\n\",\n       \"0  10.12688/f1000research.18676.1  31114675  PMC6505635   \\n\",\n       \"\\n\",\n       \"                                gse_ids  \\n\",\n       \"0  GSE100007,GSE24355,GSE25842,GSE41637  \"\n      ]\n     },\n     \"execution_count\": 8,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Get only GSE from DOI\\n\",\n    \"doi_gse_df = db.doi_to_gse(\\\"10.12688/f1000research.18676.1\\\")\\n\",\n    \"print(\\\"GSE identifiers from DOI:\\\")\\n\",\n    \"doi_gse_df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 8: Complete Workflow - DOI to Data Download\\n\",\n    \"\\n\",\n    \"Here's a complete workflow from DOI to downloading the actual data:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 9,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:44.105623Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:44.105263Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:51.023304Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:51.022717Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:44.105600Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Step 1: Extracting identifiers from DOI: 10.12688/f1000research.18676.1\\n\",\n      \"                              doi      pmid      pmc_id  \\\\\\n\",\n      \"0  10.12688/f1000research.18676.1  31114675  PMC6505635   \\n\",\n      \"\\n\",\n      \"                                             srp_ids  \\n\",\n      \"0  SRP000941,SRP003870,SRP005378,SRP010679,SRP109126  \\n\",\n      \"\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Step 1: Extract SRP from DOI\\n\",\n    \"doi = \\\"10.12688/f1000research.18676.1\\\"\\n\",\n    \"print(f\\\"Step 1: Extracting identifiers from DOI: {doi}\\\")\\n\",\n    \"doi_results = db.doi_to_srp(doi)\\n\",\n    \"print(doi_results)\\n\",\n    \"print()\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 10,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:51.024564Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:51.024187Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:26:59.904233Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:26:59.903956Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:51.024535Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Step 2: Found SRP ID: SRP000941\\n\",\n      \"\\n\",\n      \"Step 3: Getting metadata for SRP000941\\n\",\n      \"Found 2207 samples\\n\",\n      \"     study_accession                                     study_title  \\\\\\n\",\n      \"16         SRP000941  UCSD Human Reference Epigenome Mapping Project   \\n\",\n      \"1055       SRP000941  UCSD Human Reference Epigenome Mapping Project   \\n\",\n      \"1053       SRP000941  UCSD Human Reference Epigenome Mapping Project   \\n\",\n      \"1054       SRP000941  UCSD Human Reference Epigenome Mapping Project   \\n\",\n      \"968        SRP000941  UCSD Human Reference Epigenome Mapping Project   \\n\",\n      \"\\n\",\n      \"     experiment_accession                                   experiment_title  \\\\\\n\",\n      \"16              SRX027874  Reference Epigenome: ChIP-Seq Analysis of H3K9...   \\n\",\n      \"1055            SRX006235  Reference Epigenome: ChIP-Seq Analysis of H3K3...   \\n\",\n      \"1053            SRX006237  Reference Epigenome: ChIP-Seq Analysis of H3K4...   \\n\",\n      \"1054            SRX006236  Reference Epigenome: ChIP-Seq Analysis of H3K4...   \\n\",\n      \"968             SRX006240  Whole genome shotgun bisulfite sequencing of t...   \\n\",\n      \"\\n\",\n      \"                                        experiment_desc organism_taxid  \\\\\\n\",\n      \"16    Reference Epigenome: ChIP-Seq Analysis of H3K9...           9606   \\n\",\n      \"1055  Reference Epigenome: ChIP-Seq Analysis of H3K3...           9606   \\n\",\n      \"1053  Reference Epigenome: ChIP-Seq Analysis of H3K4...           9606   \\n\",\n      \"1054  Reference Epigenome: ChIP-Seq Analysis of H3K4...           9606   \\n\",\n      \"968   Whole genome shotgun bisulfite sequencing of t...           9606   \\n\",\n      \"\\n\",\n      \"     organism_name        library_name library_strategy library_source  ...  \\\\\\n\",\n      \"16    Homo sapiens               LL218         ChIP-Seq        GENOMIC  ...   \\n\",\n      \"1055  Homo sapiens               LL220         ChIP-Seq        GENOMIC  ...   \\n\",\n      \"1053  Homo sapiens               LL227         ChIP-Seq        GENOMIC  ...   \\n\",\n      \"1054  Homo sapiens               LL228         ChIP-Seq        GENOMIC  ...   \\n\",\n      \"968   Homo sapiens  methylC-seq_h1_r2b    Bisulfite-Seq        GENOMIC  ...   \\n\",\n      \"\\n\",\n      \"         biosample bioproject                   instrument  \\\\\\n\",\n      \"16    SAMN00004698       <NA>  Illumina Genome Analyzer II   \\n\",\n      \"1055  SAMN00004459       <NA>  Illumina Genome Analyzer II   \\n\",\n      \"1053  SAMN00004459       <NA>  Illumina Genome Analyzer II   \\n\",\n      \"1054  SAMN00004459       <NA>  Illumina Genome Analyzer II   \\n\",\n      \"968   SAMN00004462       <NA>  Illumina Genome Analyzer II   \\n\",\n      \"\\n\",\n      \"                 instrument_model instrument_model_desc total_spots  \\\\\\n\",\n      \"16    Illumina Genome Analyzer II              ILLUMINA    59041190   \\n\",\n      \"1055  Illumina Genome Analyzer II              ILLUMINA    12466602   \\n\",\n      \"1053  Illumina Genome Analyzer II              ILLUMINA     7763232   \\n\",\n      \"1054  Illumina Genome Analyzer II              ILLUMINA     7110370   \\n\",\n      \"968   Illumina Genome Analyzer II              ILLUMINA   544393574   \\n\",\n      \"\\n\",\n      \"       total_size run_accession run_total_spots run_total_bases  \\n\",\n      \"16     1555248627     SRR018453        11642838       419142168  \\n\",\n      \"1055    223017616     SRR018454        12466602       448797672  \\n\",\n      \"1053    204130918     SRR018455         7763232       279476352  \\n\",\n      \"1054    185053545     SRR018456         7110370       255973320  \\n\",\n      \"968   32242220269     SRR018975        16729745      1455487815  \\n\",\n      \"\\n\",\n      \"[5 rows x 24 columns]\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Step 2: Extract SRP ID from results\\n\",\n    \"if not doi_results.empty and not pd.isna(doi_results.iloc[0][\\\"srp_ids\\\"]):\\n\",\n    \"    srp_id = doi_results.iloc[0][\\\"srp_ids\\\"].split(\\\",\\\")[0]  # Take first SRP if multiple\\n\",\n    \"    print(f\\\"Step 2: Found SRP ID: {srp_id}\\\")\\n\",\n    \"    print()\\n\",\n    \"\\n\",\n    \"    # Step 3: Get metadata for this SRP\\n\",\n    \"    print(f\\\"Step 3: Getting metadata for {srp_id}\\\")\\n\",\n    \"    metadata = db.sra_metadata(srp_id)\\n\",\n    \"    print(f\\\"Found {len(metadata)} samples\\\")\\n\",\n    \"    print(metadata.head())\\n\",\n    \"\\n\",\n    \"    # Optional: Download the data\\n\",\n    \"    # db.download(df=metadata, out_dir='./downloads')\\n\",\n    \"else:\\n\",\n    \"    print(\\\"No SRP IDs found for this DOI\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 9: Batch Processing Literature\\n\",\n    \"\\n\",\n    \"Process multiple papers from a literature search:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 11,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:26:59.904602Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:26:59.904525Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:27:17.447503Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:27:17.446805Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:26:59.904594Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Processed 3 papers\\n\",\n      \"Found 1 papers with SRA data\\n\",\n      \"\\n\",\n      \"Papers with SRA data:\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>pmid</th>\\n\",\n       \"      <th>pmc_id</th>\\n\",\n       \"      <th>gse_ids</th>\\n\",\n       \"      <th>prjna_ids</th>\\n\",\n       \"      <th>srp_ids</th>\\n\",\n       \"      <th>srr_ids</th>\\n\",\n       \"      <th>srx_ids</th>\\n\",\n       \"      <th>srs_ids</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>39528918</td>\\n\",\n       \"      <td>PMC11552371</td>\\n\",\n       \"      <td>GSE253406</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>SRP484103</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"      <td>None</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"       pmid       pmc_id    gse_ids prjna_ids    srp_ids srr_ids srx_ids  \\\\\\n\",\n       \"0  39528918  PMC11552371  GSE253406      None  SRP484103    None    None   \\n\",\n       \"\\n\",\n       \"  srs_ids  \\n\",\n       \"0    None  \"\n      ]\n     },\n     \"execution_count\": 11,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"# Simulate PMIDs from a literature search\\n\",\n    \"pmids_from_search = [\\\"39528918\\\", \\\"27373336\\\", \\\"30873266\\\"]\\n\",\n    \"\\n\",\n    \"# Extract identifiers from all papers\\n\",\n    \"results = db.pmid_to_identifiers(pmids_from_search)\\n\",\n    \"\\n\",\n    \"# Filter to papers with SRA data\\n\",\n    \"papers_with_sra = results[~pd.isna(results[\\\"srp_ids\\\"])]\\n\",\n    \"\\n\",\n    \"print(f\\\"Processed {len(pmids_from_search)} papers\\\")\\n\",\n    \"print(f\\\"Found {len(papers_with_sra)} papers with SRA data\\\")\\n\",\n    \"print()\\n\",\n    \"print(\\\"Papers with SRA data:\\\")\\n\",\n    \"papers_with_sra\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 10: Extract Identifiers from Custom Text\\n\",\n    \"\\n\",\n    \"You can also extract identifiers from any text:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 12,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:27:17.448365Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:27:17.448167Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:27:17.452555Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:27:17.452046Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:27:17.448344Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Identifiers found in text:\\n\",\n      \"  GSE: GSE81903\\n\",\n      \"  PRJNA: PRJNA319707\\n\",\n      \"  SRP: SRP075720\\n\",\n      \"  SRR: SRR3587529\\n\",\n      \"  SRX: SRX1800089\\n\",\n      \"  SRS: SRS1467635\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Custom text with database identifiers\\n\",\n    \"text = \\\"\\\"\\\"\\n\",\n    \"This study analyzed RNA-seq data from GSE81903 and SRP075720.\\n\",\n    \"The BioProject accession is PRJNA319707 with representative samples \\n\",\n    \"SRR3587529, SRX1800089, and SRS1467635.\\n\",\n    \"\\\"\\\"\\\"\\n\",\n    \"\\n\",\n    \"identifiers = db.extract_identifiers_from_text(text)\\n\",\n    \"\\n\",\n    \"print(\\\"Identifiers found in text:\\\")\\n\",\n    \"for id_type, ids in identifiers.items():\\n\",\n    \"    if ids:\\n\",\n    \"        print(f\\\"  {id_type.upper()}: {', '.join(ids)}\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Example 11: ID Conversion Utilities\\n\",\n    \"\\n\",\n    \"Convert between different identifier types:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 14,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-19T11:28:37.588115Z\",\n     \"iopub.status.busy\": \"2025-10-19T11:28:37.587717Z\",\n     \"iopub.status.idle\": \"2025-10-19T11:28:40.771236Z\",\n     \"shell.execute_reply\": \"2025-10-19T11:28:40.770044Z\",\n     \"shell.execute_reply.started\": \"2025-10-19T11:28:37.588092Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"PMID to PMC conversion:\\n\",\n      \"{'27373336': 'PMC4958508'}\\n\",\n      \"\\n\",\n      \"DOI to PMID conversion:\\n\",\n      \"{'10.12688/f1000research.18676.1': '31114675'}\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Convert PMID to PMC\\n\",\n    \"print(\\\"PMID to PMC conversion:\\\")\\n\",\n    \"pmid_pmc = db.pmid_to_pmc(\\\"27373336\\\")\\n\",\n    \"print(pmid_pmc)\\n\",\n    \"print()\\n\",\n    \"\\n\",\n    \"# Convert DOI to PMID\\n\",\n    \"print(\\\"DOI to PMID conversion:\\\")\\n\",\n    \"doi_pmid = db.doi_to_pmid(\\\"10.12688/f1000research.18676.1\\\")\\n\",\n    \"print(doi_pmid)\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": []\n  }\n ],\n \"metadata\": {\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.11.12\"\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/09.Metadata_enrichment.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"5sioFsNrTU7L\"\n   },\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/09.Metadata_Enrichment_with_LLMs.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"QBGljXsQTU7M\"\n   },\n   \"source\": [\n    \"# Metadata Enrichment with LLMs\\n\",\n    \"\\n\",\n    \"pysradb now helps you 'enrich' your metadata frame by leveraging recent advancements in (fast) (S)LLMs. The parsed metadata can be fed to an LLM that is 'instructed' to enrich the metadata by returning 9 ontology-based fields::\\n\",\n    \"`organ`, `tissue`, `anatomical_system`, `cell_type`, `disease`, `sex`, `development_stage`, `assay`, `organism`\\n\",\n    \"\\n\",\n    \"There are two approaches in which this is possible:\\n\",\n    \"\\n\",\n    \"- **LLMs** ([Requires Ollama](https://ollama.com/download)  - local, no API keys)\\n\",\n    \"- **Embeddings** ([Using sentence-transformers](https://huggingface.co/sentence-transformers) with [BioLORD](https://arxiv.org/abs/2311.16075) embedding model)\\n\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"id\": \"RNrFmwO6TU7N\",\n    \"outputId\": \"acb894d2-1b75-4daf-ebfa-c9508ee2da6f\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Installing pysradb from GitHub...\\n\",\n      \"  Installing build dependencies ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"  Getting requirements to build wheel ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"  Preparing metadata (pyproject.toml) ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"  Building wheel for pysradb (pyproject.toml) ... \\u001b[?25l\\u001b[?25hdone\\n\",\n      \"pysradb installed successfully!\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-22T16:43:39.723229Z\",\n     \"iopub.status.busy\": \"2025-10-22T16:43:39.722983Z\",\n     \"iopub.status.idle\": \"2025-10-22T16:43:40.469655Z\",\n     \"shell.execute_reply\": \"2025-10-22T16:43:40.469420Z\",\n     \"shell.execute_reply.started\": \"2025-10-22T16:43:39.723206Z\"\n    },\n    \"id\": \"veB38ra_TU7N\",\n    \"outputId\": \"e7310eaf-5a61-4106-e605-c48a28477837\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/usr/local/lib/python3.12/dist-packages/pysradb/utils.py:16: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from pysradb import SRAweb\\n\",\n    \"from pysradb.metadata_enrichment import create_metadata_extractor\\n\",\n    \"from pysradb.search import GeoSearch\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"HXBwIr21TU7O\"\n   },\n   \"source\": [\n    \"## Quick Start\\n\",\n    \"\\n\",\n    \"One line enrichment!\\n\",\n    \"\\n\",\n    \"**Prerequisites**: Install Ollama (https://ollama.ai) and pull a model: `ollama pull phi3`\\n\",\n    \"\\n\",\n    \"The easiest way to enrich metadata is using the `enrich=True` parameter:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"id\": \"12mmTfSzdzgT\",\n    \"outputId\": \"8d3999a5-e322-4c75-c90a-a61492065ce3\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Hit:1 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/x86_64  InRelease\\n\",\n      \"Get:2 https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/ InRelease [3,632 B]\\n\",\n      \"Hit:3 https://cli.github.com/packages stable InRelease\\n\",\n      \"Get:4 http://security.ubuntu.com/ubuntu jammy-security InRelease [129 kB]\\n\",\n      \"Get:5 https://r2u.stat.illinois.edu/ubuntu jammy InRelease [6,555 B]\\n\",\n      \"Hit:6 http://archive.ubuntu.com/ubuntu jammy InRelease\\n\",\n      \"Get:7 http://archive.ubuntu.com/ubuntu jammy-updates InRelease [128 kB]\\n\",\n      \"Hit:8 https://ppa.launchpadcontent.net/deadsnakes/ppa/ubuntu jammy InRelease\\n\",\n      \"Get:9 https://r2u.stat.illinois.edu/ubuntu jammy/main all Packages [9,413 kB]\\n\",\n      \"Get:10 http://security.ubuntu.com/ubuntu jammy-security/universe amd64 Packages [1,288 kB]\\n\",\n      \"Hit:11 https://ppa.launchpadcontent.net/graphics-drivers/ppa/ubuntu jammy InRelease\\n\",\n      \"Hit:12 https://ppa.launchpadcontent.net/ubuntugis/ppa/ubuntu jammy InRelease\\n\",\n      \"Get:13 http://security.ubuntu.com/ubuntu jammy-security/main amd64 Packages [3,479 kB]\\n\",\n      \"Get:14 http://archive.ubuntu.com/ubuntu jammy-backports InRelease [127 kB]\\n\",\n      \"Get:15 https://r2u.stat.illinois.edu/ubuntu jammy/main amd64 Packages [2,822 kB]\\n\",\n      \"Get:16 http://archive.ubuntu.com/ubuntu jammy-updates/universe amd64 Packages [1,594 kB]\\n\",\n      \"Get:17 http://archive.ubuntu.com/ubuntu jammy-updates/restricted amd64 Packages [6,148 kB]\\n\",\n      \"Get:18 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 Packages [3,847 kB]\\n\",\n      \"Fetched 29.0 MB in 3s (8,430 kB/s)\\n\",\n      \"Reading package lists...\\n\",\n      \"Building dependency tree...\\n\",\n      \"Reading state information...\\n\",\n      \"46 packages can be upgraded. Run 'apt list --upgradable' to see them.\\n\",\n      \"\\u001b[1;33mW: \\u001b[0mSkipping acquire of configured file 'main/source/Sources' as repository 'https://r2u.stat.illinois.edu/ubuntu jammy InRelease' does not seem to provide it (sources.list entry misspelt?)\\u001b[0m\\n\",\n      \"Reading package lists...\\n\",\n      \"Building dependency tree...\\n\",\n      \"Reading state information...\\n\",\n      \"systemd is already the newest version (249.11-0ubuntu3.17).\\n\",\n      \"systemd set to manually installed.\\n\",\n      \"The following additional packages will be installed:\\n\",\n      \"  libpci3 pci.ids usb.ids\\n\",\n      \"The following NEW packages will be installed:\\n\",\n      \"  libpci3 lshw pci.ids pciutils usb.ids\\n\",\n      \"0 upgraded, 5 newly installed, 0 to remove and 46 not upgraded.\\n\",\n      \"Need to get 883 kB of archives.\\n\",\n      \"After this operation, 3,256 kB of additional disk space will be used.\\n\",\n      \"Get:1 http://archive.ubuntu.com/ubuntu jammy-updates/main amd64 pci.ids all 0.0~2022.01.22-1ubuntu0.1 [251 kB]\\n\",\n      \"Get:2 http://archive.ubuntu.com/ubuntu jammy/main amd64 libpci3 amd64 1:3.7.0-6 [28.9 kB]\\n\",\n      \"Get:3 http://archive.ubuntu.com/ubuntu jammy/main amd64 lshw amd64 02.19.git.2021.06.19.996aaad9c7-2build1 [321 kB]\\n\",\n      \"Get:4 http://archive.ubuntu.com/ubuntu jammy/main amd64 pciutils amd64 1:3.7.0-6 [63.6 kB]\\n\",\n      \"Get:5 http://archive.ubuntu.com/ubuntu jammy/main amd64 usb.ids all 2022.04.02-1 [219 kB]\\n\",\n      \"Fetched 883 kB in 1s (686 kB/s)\\n\",\n      \"debconf: unable to initialize frontend: Dialog\\n\",\n      \"debconf: (No usable dialog-like program is installed, so the dialog based frontend cannot be used. at /usr/share/perl5/Debconf/FrontEnd/Dialog.pm line 78, <> line 5.)\\n\",\n      \"debconf: falling back to frontend: Readline\\n\",\n      \"debconf: unable to initialize frontend: Readline\\n\",\n      \"debconf: (This frontend requires a controlling tty.)\\n\",\n      \"debconf: falling back to frontend: Teletype\\n\",\n      \"dpkg-preconfigure: unable to re-open stdin: \\n\",\n      \"Selecting previously unselected package pci.ids.\\n\",\n      \"(Reading database ... 125080 files and directories currently installed.)\\n\",\n      \"Preparing to unpack .../pci.ids_0.0~2022.01.22-1ubuntu0.1_all.deb ...\\n\",\n      \"Unpacking pci.ids (0.0~2022.01.22-1ubuntu0.1) ...\\n\",\n      \"Selecting previously unselected package libpci3:amd64.\\n\",\n      \"Preparing to unpack .../libpci3_1%3a3.7.0-6_amd64.deb ...\\n\",\n      \"Unpacking libpci3:amd64 (1:3.7.0-6) ...\\n\",\n      \"Selecting previously unselected package lshw.\\n\",\n      \"Preparing to unpack .../lshw_02.19.git.2021.06.19.996aaad9c7-2build1_amd64.deb ...\\n\",\n      \"Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build1) ...\\n\",\n      \"Selecting previously unselected package pciutils.\\n\",\n      \"Preparing to unpack .../pciutils_1%3a3.7.0-6_amd64.deb ...\\n\",\n      \"Unpacking pciutils (1:3.7.0-6) ...\\n\",\n      \"Selecting previously unselected package usb.ids.\\n\",\n      \"Preparing to unpack .../usb.ids_2022.04.02-1_all.deb ...\\n\",\n      \"Unpacking usb.ids (2022.04.02-1) ...\\n\",\n      \"Setting up pci.ids (0.0~2022.01.22-1ubuntu0.1) ...\\n\",\n      \"Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build1) ...\\n\",\n      \"Setting up usb.ids (2022.04.02-1) ...\\n\",\n      \"Setting up libpci3:amd64 (1:3.7.0-6) ...\\n\",\n      \"Setting up pciutils (1:3.7.0-6) ...\\n\",\n      \"Processing triggers for man-db (2.10.2-1) ...\\n\",\n      \"Processing triggers for libc-bin (2.35-0ubuntu3.8) ...\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libumf.so.1 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtcm.so.1 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libhwloc.so.15 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libur_loader.so.0 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbbbind_2_0.so.3 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libur_adapter_opencl.so.0 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbb.so.12 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbbbind_2_5.so.3 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libur_adapter_level_zero_v2.so.0 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbbmalloc_proxy.so.2 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtcm_debug.so.1 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbbmalloc.so.2 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libur_adapter_level_zero.so.0 is not a symbolic link\\n\",\n      \"\\n\",\n      \"/sbin/ldconfig.real: /usr/local/lib/libtbbbind.so.3 is not a symbolic link\\n\",\n      \"\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"! sudo apt update -qq && sudo apt install -qq pciutils lshw systemd\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"id\": \"iINq3dweaUXe\",\n    \"outputId\": \"a0b22657-6a9a-407c-a014-501eb56a4c94\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \">>> Installing ollama to /usr/local\\n\",\n      \">>> Downloading Linux amd64 bundle\\n\",\n      \"######################################################################## 100.0%\\n\",\n      \">>> Creating ollama user...\\n\",\n      \">>> Adding ollama user to video group...\\n\",\n      \">>> Adding current user to ollama group...\\n\",\n      \">>> Creating ollama systemd service...\\n\",\n      \"\\u001b[1m\\u001b[31mWARNING:\\u001b[m systemd is not running\\n\",\n      \">>> NVIDIA GPU installed.\\n\",\n      \">>> The Ollama API is now available at 127.0.0.1:11434.\\n\",\n      \">>> Install complete. Run \\\"ollama\\\" from the command line.\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!curl -fsSL https://ollama.com/install.sh | sh\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"id\": \"EgCNQeDScwvX\",\n    \"outputId\": \"9c7eb232-47f7-4ce2-abd1-27dda40519af\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      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     \"NAME           ID              SIZE      MODIFIED               \\n\",\n      \"phi3:latest    4f2222927938    2.2 GB    Less than a second ago    \\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!nohup ollama serve > ollama.log 2>&1 &\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"id\": \"poMsNDr3km1l\",\n    \"outputId\": \"9654f82b-92d8-4cdb-9441-99f80a197261\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\u001b[?2026h\\u001b[?25l\\u001b[1G\\u001b[?25h\\u001b[?2026l\\u001b[?2026h\\u001b[?25l\\u001b[1G\\u001b[?25h\\u001b[?2026l\\u001b[?2026h\\u001b[?25l\\u001b[1G\\u001b[?25h\\u001b[?2026l\\u001b[?2026h\\u001b[?25l\\u001b[1G\\u001b[?25h\\u001b[?2026l\\u001b[?2026h\\u001b[?25l\\u001b[1G\\u001b[?25h\\u001b[?2026l\\n\",\n      \"NAME           ID              SIZE      MODIFIED               \\n\",\n      \"phi3:latest    4f2222927938    2.2 GB    Less than a second ago    \\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"!ollama pull phi3:latest && ollama list\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 9,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 854,\n     \"referenced_widgets\": [\n      \"a2f7696242804d329dea1bd1d07c642a\",\n      \"4df355cbf9d6499c864d55b813d5aa38\",\n      \"d7be1ad3fb9d43d68ba14cc6dd95f208\",\n      \"2b1c99ee25aa4f1b922782ca6240f737\",\n      \"5aab185098214938a32e8b71a82fee5b\",\n      \"2be83750973345c4b9e3ba357c0813f4\",\n      \"827d4909df494037bd49dd50d16b16c5\",\n      \"e618dba921564fd28aca140eb187bd76\",\n      \"86d88cef78174f8faa2fd92c2e84e788\",\n      \"951cfb8ff78b47b38146b7e062c0ed0a\",\n      \"47dcd6740c84466f851e0fa1e8ee4db9\"\n     ]\n    },\n    \"id\": \"I6olFn2waePh\",\n    \"outputId\": \"eaefb7f2-3259-4587-8ede-ee120a05554b\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"a2f7696242804d329dea1bd1d07c642a\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"Enriching metadata:   0%|          | 0/24 [00:00<?, ?row/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.google.colaboratory.intrinsic+json\": {\n       \"repr_error\": \"Out of range float values are not JSON compliant: nan\",\n       \"type\": \"dataframe\"\n      },\n      \"text/html\": [\n       \"\\n\",\n       \"  <div id=\\\"df-5b60a1f2-7d39-461e-ba62-eb39669e6c53\\\" class=\\\"colab-df-container\\\">\\n\",\n       \"    <div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>sample_title</th>\\n\",\n       \"      <th>sex</th>\\n\",\n       \"      <th>guessed_sex</th>\\n\",\n       \"      <th>tissue</th>\\n\",\n       \"      <th>guessed_tissue</th>\\n\",\n       \"      <th>guessed_organ</th>\\n\",\n       \"      <th>guessed_anatomical_system</th>\\n\",\n       \"      <th>guessed_cell_type</th>\\n\",\n       \"      <th>guessed_organ</th>\\n\",\n       \"      <th>guessed_tissue</th>\\n\",\n       \"      <th>guessed_disease</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>cov_01_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>cov_01_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>cov_02_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>cov_02_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>cov_03_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>5</th>\\n\",\n       \"      <td>cov_03_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>6</th>\\n\",\n       \"      <td>cov_04_RNA</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>7</th>\\n\",\n       \"      <td>cov_04_antibody</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>8</th>\\n\",\n       \"      <td>cov_07_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>9</th>\\n\",\n       \"      <td>cov_07_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>10</th>\\n\",\n       \"      <td>cov_08_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>11</th>\\n\",\n       \"      <td>cov_08_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>12</th>\\n\",\n       \"      <td>cov_09_RNA</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>13</th>\\n\",\n       \"      <td>cov_09_antibody</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>14</th>\\n\",\n       \"      <td>cov_10_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>15</th>\\n\",\n       \"      <td>cov_10_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>16</th>\\n\",\n       \"      <td>cov_11_RNA</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>17</th>\\n\",\n       \"      <td>cov_11_antibody</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>18</th>\\n\",\n       \"      <td>cov_12_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>19</th>\\n\",\n       \"      <td>cov_12_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>covid-19</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>20</th>\\n\",\n       \"      <td>cov_17_RNA</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>21</th>\\n\",\n       \"      <td>cov_17_antibody</td>\\n\",\n       \"      <td>M</td>\\n\",\n       \"      <td>male</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>22</th>\\n\",\n       \"      <td>cov_18_RNA</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>23</th>\\n\",\n       \"      <td>cov_18_antibody</td>\\n\",\n       \"      <td>F</td>\\n\",\n       \"      <td>female</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>immune system</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>blood</td>\\n\",\n       \"      <td>peripheral blood</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\\n\",\n       \"    <div class=\\\"colab-df-buttons\\\">\\n\",\n       \"\\n\",\n       \"  <div class=\\\"colab-df-container\\\">\\n\",\n       \"    <button class=\\\"colab-df-convert\\\" onclick=\\\"convertToInteractive('df-5b60a1f2-7d39-461e-ba62-eb39669e6c53')\\\"\\n\",\n       \"            title=\\\"Convert this dataframe to an interactive table.\\\"\\n\",\n       \"            style=\\\"display:none;\\\">\\n\",\n       \"\\n\",\n       \"  <svg xmlns=\\\"http://www.w3.org/2000/svg\\\" height=\\\"24px\\\" viewBox=\\\"0 -960 960 960\\\">\\n\",\n       \"    <path d=\\\"M120-120v-720h720v720H120Zm60-500h600v-160H180v160Zm220 220h160v-160H400v160Zm0 220h160v-160H400v160ZM180-400h160v-160H180v160Zm440 0h160v-160H620v160ZM180-180h160v-160H180v160Zm440 0h160v-160H620v160Z\\\"/>\\n\",\n       \"  </svg>\\n\",\n       \"    </button>\\n\",\n       \"\\n\",\n       \"  <style>\\n\",\n       \"    .colab-df-container {\\n\",\n       \"      display:flex;\\n\",\n       \"      gap: 12px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-convert {\\n\",\n       \"      background-color: #E8F0FE;\\n\",\n       \"      border: none;\\n\",\n       \"      border-radius: 50%;\\n\",\n       \"      cursor: pointer;\\n\",\n       \"      display: none;\\n\",\n       \"      fill: #1967D2;\\n\",\n       \"      height: 32px;\\n\",\n       \"      padding: 0 0 0 0;\\n\",\n       \"      width: 32px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-convert:hover {\\n\",\n       \"      background-color: #E2EBFA;\\n\",\n       \"      box-shadow: 0px 1px 2px rgba(60, 64, 67, 0.3), 0px 1px 3px 1px rgba(60, 64, 67, 0.15);\\n\",\n       \"      fill: #174EA6;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-buttons div {\\n\",\n       \"      margin-bottom: 4px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    [theme=dark] .colab-df-convert {\\n\",\n       \"      background-color: #3B4455;\\n\",\n       \"      fill: #D2E3FC;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    [theme=dark] .colab-df-convert:hover {\\n\",\n       \"      background-color: #434B5C;\\n\",\n       \"      box-shadow: 0px 1px 3px 1px rgba(0, 0, 0, 0.15);\\n\",\n       \"      filter: drop-shadow(0px 1px 2px rgba(0, 0, 0, 0.3));\\n\",\n       \"      fill: #FFFFFF;\\n\",\n       \"    }\\n\",\n       \"  </style>\\n\",\n       \"\\n\",\n       \"    <script>\\n\",\n       \"      const buttonEl =\\n\",\n       \"        document.querySelector('#df-5b60a1f2-7d39-461e-ba62-eb39669e6c53 button.colab-df-convert');\\n\",\n       \"      buttonEl.style.display =\\n\",\n       \"        google.colab.kernel.accessAllowed ? 'block' : 'none';\\n\",\n       \"\\n\",\n       \"      async function convertToInteractive(key) {\\n\",\n       \"        const element = document.querySelector('#df-5b60a1f2-7d39-461e-ba62-eb39669e6c53');\\n\",\n       \"        const dataTable =\\n\",\n       \"          await google.colab.kernel.invokeFunction('convertToInteractive',\\n\",\n       \"                                                    [key], {});\\n\",\n       \"        if (!dataTable) return;\\n\",\n       \"\\n\",\n       \"        const docLinkHtml = 'Like what you see? Visit the ' +\\n\",\n       \"          '<a target=\\\"_blank\\\" href=https://colab.research.google.com/notebooks/data_table.ipynb>data table notebook</a>'\\n\",\n       \"          + ' to learn more about interactive tables.';\\n\",\n       \"        element.innerHTML = '';\\n\",\n       \"        dataTable['output_type'] = 'display_data';\\n\",\n       \"        await google.colab.output.renderOutput(dataTable, element);\\n\",\n       \"        const docLink = document.createElement('div');\\n\",\n       \"        docLink.innerHTML = docLinkHtml;\\n\",\n       \"        element.appendChild(docLink);\\n\",\n       \"      }\\n\",\n       \"    </script>\\n\",\n       \"  </div>\\n\",\n       \"\\n\",\n       \"\\n\",\n       \"    <div id=\\\"df-73eb09f2-ad70-460f-9c38-cd80d61f3236\\\">\\n\",\n       \"      <button class=\\\"colab-df-quickchart\\\" onclick=\\\"quickchart('df-73eb09f2-ad70-460f-9c38-cd80d61f3236')\\\"\\n\",\n       \"                title=\\\"Suggest charts\\\"\\n\",\n       \"                style=\\\"display:none;\\\">\\n\",\n       \"\\n\",\n       \"<svg xmlns=\\\"http://www.w3.org/2000/svg\\\" height=\\\"24px\\\"viewBox=\\\"0 0 24 24\\\"\\n\",\n       \"     width=\\\"24px\\\">\\n\",\n       \"    <g>\\n\",\n       \"        <path d=\\\"M19 3H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2zM9 17H7v-7h2v7zm4 0h-2V7h2v10zm4 0h-2v-4h2v4z\\\"/>\\n\",\n       \"    </g>\\n\",\n       \"</svg>\\n\",\n       \"      </button>\\n\",\n       \"\\n\",\n       \"<style>\\n\",\n       \"  .colab-df-quickchart {\\n\",\n       \"      --bg-color: #E8F0FE;\\n\",\n       \"      --fill-color: #1967D2;\\n\",\n       \"      --hover-bg-color: #E2EBFA;\\n\",\n       \"      --hover-fill-color: #174EA6;\\n\",\n       \"      --disabled-fill-color: #AAA;\\n\",\n       \"      --disabled-bg-color: #DDD;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  [theme=dark] .colab-df-quickchart {\\n\",\n       \"      --bg-color: #3B4455;\\n\",\n       \"      --fill-color: #D2E3FC;\\n\",\n       \"      --hover-bg-color: #434B5C;\\n\",\n       \"      --hover-fill-color: #FFFFFF;\\n\",\n       \"      --disabled-bg-color: #3B4455;\\n\",\n       \"      --disabled-fill-color: #666;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart {\\n\",\n       \"    background-color: var(--bg-color);\\n\",\n       \"    border: none;\\n\",\n       \"    border-radius: 50%;\\n\",\n       \"    cursor: pointer;\\n\",\n       \"    display: none;\\n\",\n       \"    fill: var(--fill-color);\\n\",\n       \"    height: 32px;\\n\",\n       \"    padding: 0;\\n\",\n       \"    width: 32px;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart:hover {\\n\",\n       \"    background-color: var(--hover-bg-color);\\n\",\n       \"    box-shadow: 0 1px 2px rgba(60, 64, 67, 0.3), 0 1px 3px 1px rgba(60, 64, 67, 0.15);\\n\",\n       \"    fill: var(--button-hover-fill-color);\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart-complete:disabled,\\n\",\n       \"  .colab-df-quickchart-complete:disabled:hover {\\n\",\n       \"    background-color: var(--disabled-bg-color);\\n\",\n       \"    fill: var(--disabled-fill-color);\\n\",\n       \"    box-shadow: none;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-spinner {\\n\",\n       \"    border: 2px solid var(--fill-color);\\n\",\n       \"    border-color: transparent;\\n\",\n       \"    border-bottom-color: var(--fill-color);\\n\",\n       \"    animation:\\n\",\n       \"      spin 1s steps(1) infinite;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  @keyframes spin {\\n\",\n       \"    0% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    20% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    30% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    40% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    60% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    80% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    90% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"  }\\n\",\n       \"</style>\\n\",\n       \"\\n\",\n       \"      <script>\\n\",\n       \"        async function quickchart(key) {\\n\",\n       \"          const quickchartButtonEl =\\n\",\n       \"            document.querySelector('#' + key + ' button');\\n\",\n       \"          quickchartButtonEl.disabled = true;  // To prevent multiple clicks.\\n\",\n       \"          quickchartButtonEl.classList.add('colab-df-spinner');\\n\",\n       \"          try {\\n\",\n       \"            const charts = await google.colab.kernel.invokeFunction(\\n\",\n       \"                'suggestCharts', [key], {});\\n\",\n       \"          } catch (error) {\\n\",\n       \"            console.error('Error during call to suggestCharts:', error);\\n\",\n       \"          }\\n\",\n       \"          quickchartButtonEl.classList.remove('colab-df-spinner');\\n\",\n       \"          quickchartButtonEl.classList.add('colab-df-quickchart-complete');\\n\",\n       \"        }\\n\",\n       \"        (() => {\\n\",\n       \"          let quickchartButtonEl =\\n\",\n       \"            document.querySelector('#df-73eb09f2-ad70-460f-9c38-cd80d61f3236 button');\\n\",\n       \"          quickchartButtonEl.style.display =\\n\",\n       \"            google.colab.kernel.accessAllowed ? 'block' : 'none';\\n\",\n       \"        })();\\n\",\n       \"      </script>\\n\",\n       \"    </div>\\n\",\n       \"\\n\",\n       \"    </div>\\n\",\n       \"  </div>\\n\"\n      ],\n      \"text/plain\": [\n       \"       sample_title sex guessed_sex tissue    guessed_tissue guessed_organ  \\\\\\n\",\n       \"0        cov_01_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"1   cov_01_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"2        cov_02_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"3   cov_02_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"4        cov_03_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"5   cov_03_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"6        cov_04_RNA   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"7   cov_04_antibody   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"8        cov_07_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"9   cov_07_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"10       cov_08_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"11  cov_08_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"12       cov_09_RNA   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"13  cov_09_antibody   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"14       cov_10_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"15  cov_10_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"16       cov_11_RNA   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"17  cov_11_antibody   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"18       cov_12_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"19  cov_12_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"20       cov_17_RNA   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"21  cov_17_antibody   M        male   <NA>  peripheral blood         blood   \\n\",\n       \"22       cov_18_RNA   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"23  cov_18_antibody   F      female   <NA>  peripheral blood         blood   \\n\",\n       \"\\n\",\n       \"   guessed_anatomical_system guessed_cell_type guessed_organ  \\\\\\n\",\n       \"0              immune system              pbmc         blood   \\n\",\n       \"1              immune system              pbmc         blood   \\n\",\n       \"2              immune system              pbmc         blood   \\n\",\n       \"3              immune system              pbmc         blood   \\n\",\n       \"4              immune system              pbmc         blood   \\n\",\n       \"5              immune system              pbmc         blood   \\n\",\n       \"6              immune system              pbmc         blood   \\n\",\n       \"7              immune system              pbmc         blood   \\n\",\n       \"8              immune system              pbmc         blood   \\n\",\n       \"9              immune system              pbmc         blood   \\n\",\n       \"10             immune system              pbmc         blood   \\n\",\n       \"11             immune system              pbmc         blood   \\n\",\n       \"12             immune system              pbmc         blood   \\n\",\n       \"13             immune system              pbmc         blood   \\n\",\n       \"14             immune system              pbmc         blood   \\n\",\n       \"15             immune system              pbmc         blood   \\n\",\n       \"16             immune system              pbmc         blood   \\n\",\n       \"17             immune system              pbmc         blood   \\n\",\n       \"18             immune system              pbmc         blood   \\n\",\n       \"19             immune system              pbmc         blood   \\n\",\n       \"20             immune system              pbmc         blood   \\n\",\n       \"21             immune system              pbmc         blood   \\n\",\n       \"22             immune system              pbmc         blood   \\n\",\n       \"23             immune system              pbmc         blood   \\n\",\n       \"\\n\",\n       \"      guessed_tissue guessed_disease  \\n\",\n       \"0   peripheral blood        covid-19  \\n\",\n       \"1   peripheral blood        covid-19  \\n\",\n       \"2   peripheral blood        covid-19  \\n\",\n       \"3   peripheral blood        covid-19  \\n\",\n       \"4   peripheral blood        covid-19  \\n\",\n       \"5   peripheral blood        covid-19  \\n\",\n       \"6   peripheral blood        covid-19  \\n\",\n       \"7   peripheral blood        covid-19  \\n\",\n       \"8   peripheral blood         healthy  \\n\",\n       \"9   peripheral blood         healthy  \\n\",\n       \"10  peripheral blood         healthy  \\n\",\n       \"11  peripheral blood         healthy  \\n\",\n       \"12  peripheral blood         healthy  \\n\",\n       \"13  peripheral blood         healthy  \\n\",\n       \"14  peripheral blood        covid-19  \\n\",\n       \"15  peripheral blood        covid-19  \\n\",\n       \"16  peripheral blood        covid-19  \\n\",\n       \"17  peripheral blood        covid-19  \\n\",\n       \"18  peripheral blood        covid-19  \\n\",\n       \"19  peripheral blood        covid-19  \\n\",\n       \"20  peripheral blood         healthy  \\n\",\n       \"21  peripheral blood         healthy  \\n\",\n       \"22  peripheral blood         healthy  \\n\",\n       \"23  peripheral blood         healthy  \"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    }\n   ],\n   \"source\": [\n    \"from pysradb.sraweb import SRAweb\\n\",\n    \"\\n\",\n    \"db = SRAweb()\\n\",\n    \"\\n\",\n    \"df = db.metadata(\\\"GSE155673\\\", detailed=True, enrich=True)\\n\",\n    \"\\n\",\n    \"cols = [\\n\",\n    \"    \\\"sample_title\\\",\\n\",\n    \"    \\\"sex\\\",\\n\",\n    \"    \\\"guessed_sex\\\",\\n\",\n    \"    \\\"tissue\\\",\\n\",\n    \"    \\\"guessed_tissue\\\",\\n\",\n    \"    \\\"guessed_organ\\\",\\n\",\n    \"    \\\"guessed_anatomical_system\\\",\\n\",\n    \"    \\\"guessed_cell_type\\\",\\n\",\n    \"    \\\"guessed_organ\\\",\\n\",\n    \"    \\\"guessed_tissue\\\",\\n\",\n    \"    \\\"guessed_disease\\\",\\n\",\n    \"]\\n\",\n    \"display(df[cols])\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"qa5Ch_e_TU7O\"\n   },\n   \"source\": [\n    \"---\\n\",\n    \"\\n\",\n    \"## Manual Enrichment\\n\",\n    \"\\n\",\n    \"\\n\",\n    \"For more control, you can manually create extractors and enrich DataFrames:\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"1L8mU1k0TU7O\"\n   },\n   \"source\": [\n    \"### Manual LLM-Based Enrichment\\n\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 10,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\"\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-22T16:48:19.988559Z\",\n     \"iopub.status.busy\": \"2025-10-22T16:48:19.988095Z\",\n     \"iopub.status.idle\": \"2025-10-22T16:48:25.998632Z\",\n     \"shell.execute_reply\": \"2025-10-22T16:48:25.997750Z\",\n     \"shell.execute_reply.started\": \"2025-10-22T16:48:19.988525Z\"\n    },\n    \"id\": \"r8zyyk6xTU7O\",\n    \"outputId\": \"7828b9ab-4034-435b-9d7c-ba1c9d56eb8f\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Extracted metadata:\\n\",\n      \"  organ: breast\\n\",\n      \"  anatomical_system: digestive system\\n\",\n      \"  cell_type: cd4+ t cell\\n\",\n      \"  disease: cancer\\n\",\n      \"  sex: female\\n\",\n      \"  development_stage: adult\\n\",\n      \"  assay: single-cell rna seq\\n\",\n      \"  organism: homo sapiens\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Create LLM extractor\\n\",\n    \"extractor_llm = create_metadata_extractor(method=\\\"llm\\\", backend=\\\"ollama/phi3\\\")\\n\",\n    \"\\n\",\n    \"# Test extraction\\n\",\n    \"text = (\\n\",\n    \"    \\\"Single-cell RNA-seq of CD4+ T cells from breast cancer patients. sex: F. age: 55\\\"\\n\",\n    \")\\n\",\n    \"result = extractor_llm.extract_metadata(text)\\n\",\n    \"\\n\",\n    \"print(\\\"Extracted metadata:\\\")\\n\",\n    \"for key, value in result.items():\\n\",\n    \"    if value != \\\"Unknown\\\":\\n\",\n    \"        print(f\\\"  {key}: {value}\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 11,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 195,\n     \"referenced_widgets\": [\n      \"dc19794504464b64a7ab7e46612406bb\",\n      \"be2dd404c3834276abe5fa9b1ce99e44\",\n      \"830cbb3b0b114c5cbd02a0c13de554bc\",\n      \"56c9b305e6c84804b93a081803bdd0ec\",\n      \"d7640d61db3f4e619868639a8ebd0645\",\n      \"37f621bb6b5245e880eb0a68168c06f1\",\n      \"2cc8a1dce49548f183960299f2bc5207\",\n      \"fcb48970443f461ebec11b11a91cbb6a\",\n      \"767acfa072dc4a1ea6cbc89dcbe8fe8c\",\n      \"c513263cb8134f50a158028262d30dda\",\n      \"f9cb0b5be77349f1a3b93adc423beb97\"\n     ]\n    },\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-22T16:48:29.277395Z\",\n     \"iopub.status.busy\": \"2025-10-22T16:48:29.276699Z\",\n     \"iopub.status.idle\": \"2025-10-22T16:48:45.378697Z\",\n     \"shell.execute_reply\": \"2025-10-22T16:48:45.378199Z\",\n     \"shell.execute_reply.started\": \"2025-10-22T16:48:29.277335Z\"\n    },\n    \"id\": \"m2UKRJshTU7O\",\n    \"outputId\": \"e9dbbcd7-6ca6-44d8-a766-b6a5b7b068fb\"\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"dc19794504464b64a7ab7e46612406bb\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"Enriching metadata:   0%|          | 0/3 [00:00<?, ?row/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.google.colaboratory.intrinsic+json\": {\n       \"summary\": \"{\\n  \\\"name\\\": \\\"    display(df_enriched[cols])\\\",\\n  \\\"rows\\\": 3,\\n  \\\"fields\\\": [\\n    {\\n      \\\"column\\\": \\\"sample_title\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"string\\\",\\n        \\\"num_unique_values\\\": 3,\\n        \\\"samples\\\": [\\n          \\\"cov_01_RNA\\\",\\n          \\\"cov_01_antibody\\\",\\n          \\\"cov_02_RNA\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_organ\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"string\\\",\\n        \\\"num_unique_values\\\": 2,\\n        \\\"samples\\\": [\\n          \\\"unknown\\\",\\n          \\\"brain\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_tissue\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"string\\\",\\n        \\\"num_unique_values\\\": 2,\\n        \\\"samples\\\": [\\n          \\\"unknown\\\",\\n          \\\"brain tissue\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_anatomical_system\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"string\\\",\\n        \\\"num_unique_values\\\": 2,\\n        \\\"samples\\\": [\\n          \\\"unknown\\\",\\n          \\\"nervous system\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_cell_type\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"string\\\",\\n        \\\"num_unique_values\\\": 2,\\n        \\\"samples\\\": [\\n          \\\"pbmc\\\",\\n          \\\"neuron\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_disease\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"category\\\",\\n        \\\"num_unique_values\\\": 1,\\n        \\\"samples\\\": [\\n          \\\"healthy\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_sex\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"category\\\",\\n        \\\"num_unique_values\\\": 1,\\n        \\\"samples\\\": [\\n          \\\"unknown\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_development_stage\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"category\\\",\\n        \\\"num_unique_values\\\": 1,\\n        \\\"samples\\\": [\\n          \\\"adult\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_assay\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"category\\\",\\n        \\\"num_unique_values\\\": 1,\\n        \\\"samples\\\": [\\n          \\\"rna-seq\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    },\\n    {\\n      \\\"column\\\": \\\"guessed_organism\\\",\\n      \\\"properties\\\": {\\n        \\\"dtype\\\": \\\"category\\\",\\n        \\\"num_unique_values\\\": 1,\\n        \\\"samples\\\": [\\n          \\\"homo sapiens\\\"\\n        ],\\n        \\\"semantic_type\\\": \\\"\\\",\\n        \\\"description\\\": \\\"\\\"\\n      }\\n    }\\n  ]\\n}\",\n       \"type\": \"dataframe\"\n      },\n      \"text/html\": [\n       \"\\n\",\n       \"  <div id=\\\"df-990d6313-4c66-45d6-9989-cc56a0ddbdd2\\\" class=\\\"colab-df-container\\\">\\n\",\n       \"    <div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>sample_title</th>\\n\",\n       \"      <th>guessed_organ</th>\\n\",\n       \"      <th>guessed_tissue</th>\\n\",\n       \"      <th>guessed_anatomical_system</th>\\n\",\n       \"      <th>guessed_cell_type</th>\\n\",\n       \"      <th>guessed_disease</th>\\n\",\n       \"      <th>guessed_sex</th>\\n\",\n       \"      <th>guessed_development_stage</th>\\n\",\n       \"      <th>guessed_assay</th>\\n\",\n       \"      <th>guessed_organism</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>cov_01_RNA</td>\\n\",\n       \"      <td>brain</td>\\n\",\n       \"      <td>brain tissue</td>\\n\",\n       \"      <td>nervous system</td>\\n\",\n       \"      <td>neuron</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>adult</td>\\n\",\n       \"      <td>rna-seq</td>\\n\",\n       \"      <td>homo sapiens</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>cov_01_antibody</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>pbmc</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>adult</td>\\n\",\n       \"      <td>rna-seq</td>\\n\",\n       \"      <td>homo sapiens</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>cov_02_RNA</td>\\n\",\n       \"      <td>brain</td>\\n\",\n       \"      <td>brain tissue</td>\\n\",\n       \"      <td>nervous system</td>\\n\",\n       \"      <td>neuron</td>\\n\",\n       \"      <td>healthy</td>\\n\",\n       \"      <td>unknown</td>\\n\",\n       \"      <td>adult</td>\\n\",\n       \"      <td>rna-seq</td>\\n\",\n       \"      <td>homo sapiens</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\\n\",\n       \"    <div class=\\\"colab-df-buttons\\\">\\n\",\n       \"\\n\",\n       \"  <div class=\\\"colab-df-container\\\">\\n\",\n       \"    <button class=\\\"colab-df-convert\\\" onclick=\\\"convertToInteractive('df-990d6313-4c66-45d6-9989-cc56a0ddbdd2')\\\"\\n\",\n       \"            title=\\\"Convert this dataframe to an interactive table.\\\"\\n\",\n       \"            style=\\\"display:none;\\\">\\n\",\n       \"\\n\",\n       \"  <svg xmlns=\\\"http://www.w3.org/2000/svg\\\" height=\\\"24px\\\" viewBox=\\\"0 -960 960 960\\\">\\n\",\n       \"    <path d=\\\"M120-120v-720h720v720H120Zm60-500h600v-160H180v160Zm220 220h160v-160H400v160Zm0 220h160v-160H400v160ZM180-400h160v-160H180v160Zm440 0h160v-160H620v160ZM180-180h160v-160H180v160Zm440 0h160v-160H620v160Z\\\"/>\\n\",\n       \"  </svg>\\n\",\n       \"    </button>\\n\",\n       \"\\n\",\n       \"  <style>\\n\",\n       \"    .colab-df-container {\\n\",\n       \"      display:flex;\\n\",\n       \"      gap: 12px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-convert {\\n\",\n       \"      background-color: #E8F0FE;\\n\",\n       \"      border: none;\\n\",\n       \"      border-radius: 50%;\\n\",\n       \"      cursor: pointer;\\n\",\n       \"      display: none;\\n\",\n       \"      fill: #1967D2;\\n\",\n       \"      height: 32px;\\n\",\n       \"      padding: 0 0 0 0;\\n\",\n       \"      width: 32px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-convert:hover {\\n\",\n       \"      background-color: #E2EBFA;\\n\",\n       \"      box-shadow: 0px 1px 2px rgba(60, 64, 67, 0.3), 0px 1px 3px 1px rgba(60, 64, 67, 0.15);\\n\",\n       \"      fill: #174EA6;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .colab-df-buttons div {\\n\",\n       \"      margin-bottom: 4px;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    [theme=dark] .colab-df-convert {\\n\",\n       \"      background-color: #3B4455;\\n\",\n       \"      fill: #D2E3FC;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    [theme=dark] .colab-df-convert:hover {\\n\",\n       \"      background-color: #434B5C;\\n\",\n       \"      box-shadow: 0px 1px 3px 1px rgba(0, 0, 0, 0.15);\\n\",\n       \"      filter: drop-shadow(0px 1px 2px rgba(0, 0, 0, 0.3));\\n\",\n       \"      fill: #FFFFFF;\\n\",\n       \"    }\\n\",\n       \"  </style>\\n\",\n       \"\\n\",\n       \"    <script>\\n\",\n       \"      const buttonEl =\\n\",\n       \"        document.querySelector('#df-990d6313-4c66-45d6-9989-cc56a0ddbdd2 button.colab-df-convert');\\n\",\n       \"      buttonEl.style.display =\\n\",\n       \"        google.colab.kernel.accessAllowed ? 'block' : 'none';\\n\",\n       \"\\n\",\n       \"      async function convertToInteractive(key) {\\n\",\n       \"        const element = document.querySelector('#df-990d6313-4c66-45d6-9989-cc56a0ddbdd2');\\n\",\n       \"        const dataTable =\\n\",\n       \"          await google.colab.kernel.invokeFunction('convertToInteractive',\\n\",\n       \"                                                    [key], {});\\n\",\n       \"        if (!dataTable) return;\\n\",\n       \"\\n\",\n       \"        const docLinkHtml = 'Like what you see? Visit the ' +\\n\",\n       \"          '<a target=\\\"_blank\\\" href=https://colab.research.google.com/notebooks/data_table.ipynb>data table notebook</a>'\\n\",\n       \"          + ' to learn more about interactive tables.';\\n\",\n       \"        element.innerHTML = '';\\n\",\n       \"        dataTable['output_type'] = 'display_data';\\n\",\n       \"        await google.colab.output.renderOutput(dataTable, element);\\n\",\n       \"        const docLink = document.createElement('div');\\n\",\n       \"        docLink.innerHTML = docLinkHtml;\\n\",\n       \"        element.appendChild(docLink);\\n\",\n       \"      }\\n\",\n       \"    </script>\\n\",\n       \"  </div>\\n\",\n       \"\\n\",\n       \"\\n\",\n       \"    <div id=\\\"df-1f613cfd-309f-4229-8426-1b6373d3bcda\\\">\\n\",\n       \"      <button class=\\\"colab-df-quickchart\\\" onclick=\\\"quickchart('df-1f613cfd-309f-4229-8426-1b6373d3bcda')\\\"\\n\",\n       \"                title=\\\"Suggest charts\\\"\\n\",\n       \"                style=\\\"display:none;\\\">\\n\",\n       \"\\n\",\n       \"<svg xmlns=\\\"http://www.w3.org/2000/svg\\\" height=\\\"24px\\\"viewBox=\\\"0 0 24 24\\\"\\n\",\n       \"     width=\\\"24px\\\">\\n\",\n       \"    <g>\\n\",\n       \"        <path d=\\\"M19 3H5c-1.1 0-2 .9-2 2v14c0 1.1.9 2 2 2h14c1.1 0 2-.9 2-2V5c0-1.1-.9-2-2-2zM9 17H7v-7h2v7zm4 0h-2V7h2v10zm4 0h-2v-4h2v4z\\\"/>\\n\",\n       \"    </g>\\n\",\n       \"</svg>\\n\",\n       \"      </button>\\n\",\n       \"\\n\",\n       \"<style>\\n\",\n       \"  .colab-df-quickchart {\\n\",\n       \"      --bg-color: #E8F0FE;\\n\",\n       \"      --fill-color: #1967D2;\\n\",\n       \"      --hover-bg-color: #E2EBFA;\\n\",\n       \"      --hover-fill-color: #174EA6;\\n\",\n       \"      --disabled-fill-color: #AAA;\\n\",\n       \"      --disabled-bg-color: #DDD;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  [theme=dark] .colab-df-quickchart {\\n\",\n       \"      --bg-color: #3B4455;\\n\",\n       \"      --fill-color: #D2E3FC;\\n\",\n       \"      --hover-bg-color: #434B5C;\\n\",\n       \"      --hover-fill-color: #FFFFFF;\\n\",\n       \"      --disabled-bg-color: #3B4455;\\n\",\n       \"      --disabled-fill-color: #666;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart {\\n\",\n       \"    background-color: var(--bg-color);\\n\",\n       \"    border: none;\\n\",\n       \"    border-radius: 50%;\\n\",\n       \"    cursor: pointer;\\n\",\n       \"    display: none;\\n\",\n       \"    fill: var(--fill-color);\\n\",\n       \"    height: 32px;\\n\",\n       \"    padding: 0;\\n\",\n       \"    width: 32px;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart:hover {\\n\",\n       \"    background-color: var(--hover-bg-color);\\n\",\n       \"    box-shadow: 0 1px 2px rgba(60, 64, 67, 0.3), 0 1px 3px 1px rgba(60, 64, 67, 0.15);\\n\",\n       \"    fill: var(--button-hover-fill-color);\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-quickchart-complete:disabled,\\n\",\n       \"  .colab-df-quickchart-complete:disabled:hover {\\n\",\n       \"    background-color: var(--disabled-bg-color);\\n\",\n       \"    fill: var(--disabled-fill-color);\\n\",\n       \"    box-shadow: none;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  .colab-df-spinner {\\n\",\n       \"    border: 2px solid var(--fill-color);\\n\",\n       \"    border-color: transparent;\\n\",\n       \"    border-bottom-color: var(--fill-color);\\n\",\n       \"    animation:\\n\",\n       \"      spin 1s steps(1) infinite;\\n\",\n       \"  }\\n\",\n       \"\\n\",\n       \"  @keyframes spin {\\n\",\n       \"    0% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    20% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    30% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-left-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    40% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"      border-top-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    60% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    80% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-right-color: var(--fill-color);\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"    90% {\\n\",\n       \"      border-color: transparent;\\n\",\n       \"      border-bottom-color: var(--fill-color);\\n\",\n       \"    }\\n\",\n       \"  }\\n\",\n       \"</style>\\n\",\n       \"\\n\",\n       \"      <script>\\n\",\n       \"        async function quickchart(key) {\\n\",\n       \"          const quickchartButtonEl =\\n\",\n       \"            document.querySelector('#' + key + ' button');\\n\",\n       \"          quickchartButtonEl.disabled = true;  // To prevent multiple clicks.\\n\",\n       \"          quickchartButtonEl.classList.add('colab-df-spinner');\\n\",\n       \"          try {\\n\",\n       \"            const charts = await google.colab.kernel.invokeFunction(\\n\",\n       \"                'suggestCharts', [key], {});\\n\",\n       \"          } catch (error) {\\n\",\n       \"            console.error('Error during call to suggestCharts:', error);\\n\",\n       \"          }\\n\",\n       \"          quickchartButtonEl.classList.remove('colab-df-spinner');\\n\",\n       \"          quickchartButtonEl.classList.add('colab-df-quickchart-complete');\\n\",\n       \"        }\\n\",\n       \"        (() => {\\n\",\n       \"          let quickchartButtonEl =\\n\",\n       \"            document.querySelector('#df-1f613cfd-309f-4229-8426-1b6373d3bcda button');\\n\",\n       \"          quickchartButtonEl.style.display =\\n\",\n       \"            google.colab.kernel.accessAllowed ? 'block' : 'none';\\n\",\n       \"        })();\\n\",\n       \"      </script>\\n\",\n       \"    </div>\\n\",\n       \"\\n\",\n       \"    </div>\\n\",\n       \"  </div>\\n\"\n      ],\n      \"text/plain\": [\n       \"      sample_title guessed_organ guessed_tissue guessed_anatomical_system  \\\\\\n\",\n       \"0       cov_01_RNA         brain   brain tissue            nervous system   \\n\",\n       \"1  cov_01_antibody       unknown        unknown                   unknown   \\n\",\n       \"2       cov_02_RNA         brain   brain tissue            nervous system   \\n\",\n       \"\\n\",\n       \"  guessed_cell_type guessed_disease guessed_sex guessed_development_stage  \\\\\\n\",\n       \"0            neuron         healthy     unknown                     adult   \\n\",\n       \"1              pbmc         healthy     unknown                     adult   \\n\",\n       \"2            neuron         healthy     unknown                     adult   \\n\",\n       \"\\n\",\n       \"  guessed_assay guessed_organism  \\n\",\n       \"0       rna-seq     homo sapiens  \\n\",\n       \"1       rna-seq     homo sapiens  \\n\",\n       \"2       rna-seq     homo sapiens  \"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    }\n   ],\n   \"source\": [\n    \"if not df.empty:\\n\",\n    \"    df_enriched = extractor_llm.enrich_dataframe(\\n\",\n    \"        df.head(3), text_column=\\\"sample_title\\\", prefix=\\\"guessed_\\\"\\n\",\n    \"    )\\n\",\n    \"\\n\",\n    \"    cols = [\\\"sample_title\\\"] + [\\n\",\n    \"        c for c in df_enriched.columns if c.startswith(\\\"guessed_\\\")\\n\",\n    \"    ]\\n\",\n    \"    display(df_enriched[cols])\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {\n    \"id\": \"LpqKPbUhTU7P\"\n   },\n   \"source\": [\n    \"### Manual Embedding-Based Enrichment\\n\",\n    \"\\n\",\n    \"Faster than LLMs, works offline. Load comprehensive ontology reference (31K+ terms):\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 12,\n   \"metadata\": {\n    \"colab\": {\n     \"base_uri\": \"https://localhost:8080/\",\n     \"height\": 545,\n     \"referenced_widgets\": [\n      \"3e50af1eca894c3399d048aefbb845f1\",\n      \"ac674fd9e2f64cfbae4a1e781a6c45bf\",\n      \"dfa4e2a65fb44f238e6dc09588c545f0\",\n      \"fa968cf8d2a64cf09345a87e40c4dd0e\",\n      \"e8b7cb75c8b444f394671c7f2120ce40\",\n      \"f765315e669d44c18c57e8e49fbc226f\",\n      \"562282aa212341c48b3e1deeb9739de1\",\n      \"28d0e8c7b542492398a0f79b431c761f\",\n      \"61de55611634414fac9e23f7b8e515e3\",\n      \"0f81ad1bb8b54f99b127b32f90bd0e69\",\n      \"404fc1d6f6d047b69e318cdde29108a0\",\n      \"ac3a7eb327fa4ac88391346776f3d7dc\",\n      \"6d95724552fd40a6aa098d13c7e6a4fb\",\n      \"af1f6c9cfce4450e806a2e00fff3ef44\",\n      \"29fcf766d37c44a0a76b8faab54492a5\",\n      \"9d34e6c58468477ca0e5594deaad7f1d\",\n      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\"shell.execute_reply\": \"2025-10-22T16:49:15.702764Z\",\n     \"shell.execute_reply.started\": \"2025-10-22T16:49:05.232516Z\"\n    },\n    \"id\": \"F0iOlZ9tTU7P\",\n    \"outputId\": \"1abe7c86-453f-4584-a61a-bbc30af03aba\"\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Loaded 698 ontology terms\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/usr/local/lib/python3.12/dist-packages/huggingface_hub/utils/_auth.py:94: UserWarning: \\n\",\n      \"The secret `HF_TOKEN` does not exist in your Colab secrets.\\n\",\n      \"To authenticate with the Hugging Face Hub, create a token in your settings tab (https://huggingface.co/settings/tokens), set it as secret in your Google Colab and restart your session.\\n\",\n      \"You will be able to reuse this secret in all of your notebooks.\\n\",\n      \"Please note that authentication is recommended but still optional to access public models or datasets.\\n\",\n      \"  warnings.warn(\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"3e50af1eca894c3399d048aefbb845f1\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"modules.json:   0%|          | 0.00/229 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"ac3a7eb327fa4ac88391346776f3d7dc\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"config_sentence_transformers.json:   0%|          | 0.00/124 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"feece831475f496b97f77ac2ff53047f\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"README.md: 0.00B [00:00, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"6de015b4578841a8a1061350e15da8b3\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"sentence_bert_config.json:   0%|          | 0.00/53.0 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"3f4bcc5af37b4317b2a1d4c130b5a373\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"config.json:   0%|          | 0.00/649 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"894f6addaa1d46f89a3bfc24b11365cd\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"model.safetensors:   0%|          | 0.00/438M [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"8941e47c2fc34df0876c4924b43362c3\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"tokenizer_config.json: 0.00B [00:00, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"594fe5c3fb8d41ce827935b752501bc2\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"vocab.txt: 0.00B [00:00, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"74583c53d9104717aa07b95fd7709ec8\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"tokenizer.json: 0.00B [00:00, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"8f62c3240b7b40d9ab87be96b6662a3c\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"special_tokens_map.json:   0%|          | 0.00/280 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"data\": {\n      \"application/vnd.jupyter.widget-view+json\": {\n       \"model_id\": \"f0ea129b00ed4cb6b5374de37e9c6639\",\n       \"version_major\": 2,\n       \"version_minor\": 0\n      },\n      \"text/plain\": [\n       \"config.json:   0%|          | 0.00/190 [00:00<?, ?B/s]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"Extracted: {'organ': 'Unknown', 'tissue': 'Unknown', 'anatomical_system': 'Unknown', 'cell_type': 'CD8 T cell', 'disease': 'melanoma', 'sex': 'Unknown', 'development_stage': 'Unknown', 'assay': 'microRNA sequencing', 'organism': 'Unknown'}\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Load ontology reference (31K+ terms from UBERON, MONDO, CL)\\n\",\n    \"from pysradb.metadata_enrichment import load_ontology_reference\\n\",\n    \"\\n\",\n    \"ontology_ref = load_ontology_reference()\\n\",\n    \"print(f\\\"Loaded {sum(len(v) for v in ontology_ref.values()):,} ontology terms\\\")\\n\",\n    \"\\n\",\n    \"# Create embedding extractor\\n\",\n    \"extractor_emb = create_metadata_extractor(\\n\",\n    \"    method=\\\"embedding\\\",\\n\",\n    \"    model=\\\"FremyCompany/BioLORD-2023\\\",\\n\",\n    \"    reference_categories=ontology_ref,\\n\",\n    \")\\n\",\n    \"\\n\",\n    \"text = \\\"scRNA-seq of CD8+ T cells from melanoma patients\\\"\\n\",\n    \"result = extractor_emb.extract_metadata(text)\\n\",\n    \"print(f\\\"\\\\nExtracted: {result}\\\")\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"accelerator\": \"GPU\",\n  \"colab\": {\n   \"gpuType\": \"T4\",\n   \"provenance\": []\n  },\n  \"kernelspec\": {\n   \"display_name\": \"Python [conda env:base] *\",\n   \"language\": \"python\",\n   \"name\": \"conda-base-py\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.13.9\"\n  },\n  \"widgets\": {\n   \"application/vnd.jupyter.widget-state+json\": {\n    \"state\": {},\n    \"version_major\": 2,\n    \"version_minor\": 0\n   }\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}\n"
  },
  {
    "path": "notebooks/11.Parse_Bioscience_Search.ipynb",
    "content": "{\n \"cells\": [\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/saketkc/pysradb/blob/develop/notebooks/11.Parse_Bioscience_Search.ipynb)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"\\n\",\n    \"This notebook demonstrates how to search for all Parse Bioscience single-cell sequencing datasets in the Gene Expression Omnibus (GEO) database.\\n\",\n    \"\\n\",\n    \"[Parse Biosciences](https://www.parsebiosciences.com/) provides single-cell RNA sequencing technology using a combinatorial barcoding approach. This example shows how to find all Parse Bioscience datasets published from January 1, 2020 to the present day.\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"source\": [\n    \"#\",\n    \" \",\n    \"P\",\n    \"a\",\n    \"r\",\n    \"s\",\n    \"e\",\n    \" \",\n    \"B\",\n    \"i\",\n    \"o\",\n    \"S\",\n    \"c\",\n    \"i\",\n    \"e\",\n    \"n\",\n    \"c\",\n    \"e\",\n    \" \",\n    \"S\",\n    \"e\",\n    \"a\",\n    \"r\",\n    \"c\",\n    \"h\",\n    \"\\n\",\n    \"\\n\",\n    \"T\",\n    \"h\",\n    \"i\",\n    \"s\",\n    \" \",\n    \"n\",\n    \"o\",\n    \"t\",\n    \"e\",\n    \"b\",\n    \"o\",\n    \"o\",\n    \"k\",\n    \" \",\n    \"d\",\n    \"e\",\n    \"m\",\n    \"o\",\n    \"n\",\n    \"s\",\n    \"t\",\n    \"r\",\n    \"a\",\n    \"t\",\n    \"e\",\n    \"s\",\n    \" \",\n    \"h\",\n    \"o\",\n    \"w\",\n    \" \",\n    \"t\",\n    \"o\",\n    \" \",\n    \"p\",\n    \"a\",\n    \"r\",\n    \"s\",\n    \"e\",\n    \" \",\n    \"a\",\n    \"n\",\n    \"d\",\n    \" \",\n    \"a\",\n    \"n\",\n    \"a\",\n    \"l\",\n    \"y\",\n    \"z\",\n    \"e\",\n    \" \",\n    \"s\",\n    \"e\",\n    \"a\",\n    \"r\",\n    \"c\",\n    \"h\",\n    \" \",\n    \"r\",\n    \"e\",\n    \"s\",\n    \"u\",\n    \"l\",\n    \"t\",\n    \"s\",\n    \" \",\n    \"f\",\n    \"r\",\n    \"o\",\n    \"m\",\n    \" \",\n    \"B\",\n    \"i\",\n    \"o\",\n    \"S\",\n    \"c\",\n    \"i\",\n    \"e\",\n    \"n\",\n    \"c\",\n    \"e\",\n    \" \",\n    \"d\",\n    \"a\",\n    \"t\",\n    \"a\",\n    \"s\",\n    \"e\",\n    \"t\",\n    \"s\",\n    \".\"\n   ],\n   \"metadata\": {}\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": null,\n   \"metadata\": {},\n   \"outputs\": [],\n   \"source\": [\n    \"# Install pysradb if not already installed\\n\",\n    \"try:\\n\",\n    \"    import pysradb\\n\",\n    \"\\n\",\n    \"    print(f\\\"pysradb {pysradb.__version__} is already installed\\\")\\n\",\n    \"except ImportError:\\n\",\n    \"    print(\\\"Installing pysradb from GitHub...\\\")\\n\",\n    \"    import sys\\n\",\n    \"\\n\",\n    \"    !{sys.executable} -m pip install -q git+https://github.com/saketkc/pysradb\\n\",\n    \"    print(\\\"pysradb installed successfully!\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Setup\\n\",\n    \"\\n\",\n    \"First, let's import the necessary modules and set up our search parameters:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 1,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:24.787045Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:24.786702Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:25.363299Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:25.363068Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:24.787020Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"/Users/saket/github/pysradb/pysradb/utils.py:14: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\\n\",\n      \"  from tqdm.autonotebook import tqdm\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"from datetime import datetime\\n\",\n    \"\\n\",\n    \"import pandas as pd\\n\",\n    \"\\n\",\n    \"from pysradb.search import GeoSearch\\n\",\n    \"\\n\",\n    \"# Set pandas display options for better readability\\n\",\n    \"pd.set_option(\\\"display.max_columns\\\", None)\\n\",\n    \"pd.set_option(\\\"display.max_colwidth\\\", 100)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Search for Parse Bioscience Datasets\\n\",\n    \"\\n\",\n    \"We'll search GEO for all datasets that mention \\\"Parse Bioscience\\\". \\n\",\n    \"\\n\",\n    \"**Note**: The GEO search date filtering can be restrictive and may miss some results. We'll search without date constraints first, then you can filter the results by date manually if needed.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 2,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:25.363728Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:25.363623Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.149014Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.148696Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:25.363721Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Searching for Parse Bioscience datasets...\\n\",\n      \"This may take a few minutes...\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|██████████████████████████████████████████████████████████████████████████| 500/500 [00:11<00:00, 41.86it/s]\\n\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"Found 500 total entries matching the search criteria\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Search for Parse Bioscience datasets\\n\",\n    \"# Note: Date filtering with GeoSearch can be restrictive and may miss results\\n\",\n    \"# We'll first search without date filter, then filter results manually if needed\\n\",\n    \"\\n\",\n    \"print(\\\"Searching for Parse Bioscience datasets...\\\")\\n\",\n    \"print(\\\"This may take a few minutes...\\\\n\\\")\\n\",\n    \"\\n\",\n    \"# Create search instance\\n\",\n    \"# We use verbosity=3 to get all available metadata\\n\",\n    \"# Starting without date filter to ensure we capture all datasets\\n\",\n    \"instance = GeoSearch(\\n\",\n    \"    verbosity=3,\\n\",\n    \"    return_max=500,  # Adjust if needed\\n\",\n    \"    geo_query=\\\"Parse Biosciences OR Evercode\\\",\\n\",\n    \")\\n\",\n    \"\\n\",\n    \"# Execute the search\\n\",\n    \"instance.search()\\n\",\n    \"\\n\",\n    \"# Get results as DataFrame\\n\",\n    \"df = instance.get_df()\\n\",\n    \"\\n\",\n    \"print(f\\\"\\\\nFound {len(df)} total entries matching the search criteria\\\")\\n\",\n    \"\\n\",\n    \"# Optional: Filter by date manually if needed\\n\",\n    \"# Uncomment the following to filter by publication date\\n\",\n    \"# if not df.empty and 'run_1_published' in df.columns:\\n\",\n    \"#     df['pub_date'] = pd.to_datetime(df['run_1_published'], errors='coerce')\\n\",\n    \"#     df = df[df['pub_date'] >= '2020-01-01']\\n\",\n    \"#     print(f\\\"After date filtering (>=2020-01-01): {len(df)} entries\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 3,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.149760Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.149671Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.905180Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.904836Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.149751Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>sample_taxon_id</th>\\n\",\n       \"      <th>sample_scientific_name</th>\\n\",\n       \"      <th>experiment_library_strategy</th>\\n\",\n       \"      <th>experiment_library_source</th>\\n\",\n       \"      <th>experiment_library_selection</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>sample_alias</th>\\n\",\n       \"      <th>experiment_instrument_model</th>\\n\",\n       \"      <th>pool_member_spots</th>\\n\",\n       \"      <th>run_1_size</th>\\n\",\n       \"      <th>run_1_accession</th>\\n\",\n       \"      <th>run_1_total_spots</th>\\n\",\n       \"      <th>run_1_total_bases</th>\\n\",\n       \"      <th>experiment_alias</th>\\n\",\n       \"      <th>experiment_attributes_1_tag</th>\\n\",\n       \"      <th>experiment_attributes_1_value</th>\\n\",\n       \"      <th>experiment_external_id</th>\\n\",\n       \"      <th>experiment_external_id_1</th>\\n\",\n       \"      <th>experiment_external_id_1_namespace</th>\\n\",\n       \"      <th>experiment_library_construction_protocol</th>\\n\",\n       \"      <th>experiment_library_name</th>\\n\",\n       \"      <th>experiment_link_1_type</th>\\n\",\n       \"      <th>experiment_link_1_value_1</th>\\n\",\n       \"      <th>experiment_link_1_value_2</th>\\n\",\n       \"      <th>experiment_link_1_value_3</th>\\n\",\n       \"      <th>experiment_platform</th>\\n\",\n       \"      <th>experiment_sample_descriptor_accession</th>\\n\",\n       \"      <th>library_layout</th>\\n\",\n       \"      <th>pool_external_id</th>\\n\",\n       \"      <th>pool_member_accession</th>\\n\",\n       \"      <th>pool_member_bases</th>\\n\",\n       \"      <th>pool_member_member_name</th>\\n\",\n       \"      <th>pool_member_organism</th>\\n\",\n       \"      <th>pool_member_sample_name</th>\\n\",\n       \"      <th>pool_member_sample_title</th>\\n\",\n       \"      <th>pool_member_tax_id</th>\\n\",\n       \"      <th>run_10_accession</th>\\n\",\n       \"      <th>run_10_alias</th>\\n\",\n       \"      <th>run_10_base_A_count</th>\\n\",\n       \"      <th>run_10_base_C_count</th>\\n\",\n       \"      <th>run_10_base_G_count</th>\\n\",\n       \"      <th>run_10_base_N_count</th>\\n\",\n       \"      <th>run_10_base_T_count</th>\\n\",\n       \"      <th>run_10_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_10_cloudfile_1_location</th>\\n\",\n       \"      <th>run_10_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_10_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_10_cloudfile_2_location</th>\\n\",\n       \"      <th>run_10_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_10_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_10_cloudfile_3_location</th>\\n\",\n       \"      <th>run_10_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_10_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_10_cloudfile_4_location</th>\\n\",\n       \"      <th>run_10_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_10_cluster_name</th>\\n\",\n       \"      <th>run_10_database_1</th>\\n\",\n       \"      <th>run_10_has_taxanalysis</th>\\n\",\n       \"      <th>run_10_is_public</th>\\n\",\n       \"      <th>run_10_load_done</th>\\n\",\n       \"      <th>run_10_published</th>\\n\",\n       \"      <th>run_10_size</th>\\n\",\n       \"      <th>run_10_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_10_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_10_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_10_srafile_1_cluster</th>\\n\",\n       \"      <th>run_10_srafile_1_date</th>\\n\",\n       \"      <th>run_10_srafile_1_filename</th>\\n\",\n       \"      <th>run_10_srafile_1_md5</th>\\n\",\n       \"      <th>run_10_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_10_srafile_1_size</th>\\n\",\n       \"      <th>run_10_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_10_srafile_1_supertype</th>\\n\",\n       \"      <th>run_10_srafile_1_version</th>\\n\",\n       \"      <th>run_10_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_10_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_10_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_10_srafile_2_cluster</th>\\n\",\n       \"      <th>run_10_srafile_2_date</th>\\n\",\n       \"      <th>run_10_srafile_2_filename</th>\\n\",\n       \"      <th>run_10_srafile_2_md5</th>\\n\",\n       \"      <th>run_10_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_10_srafile_2_size</th>\\n\",\n       \"      <th>run_10_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_10_srafile_2_supertype</th>\\n\",\n       \"      <th>run_10_srafile_2_url</th>\\n\",\n       \"      <th>run_10_srafile_2_version</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_10_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_10_srafile_3_cluster</th>\\n\",\n       \"      <th>run_10_srafile_3_date</th>\\n\",\n       \"      <th>run_10_srafile_3_filename</th>\\n\",\n       \"      <th>run_10_srafile_3_md5</th>\\n\",\n       \"      <th>run_10_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_10_srafile_3_size</th>\\n\",\n       \"      <th>run_10_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_10_srafile_3_supertype</th>\\n\",\n       \"      <th>run_10_srafile_3_url</th>\\n\",\n       \"      <th>run_10_srafile_3_version</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_10_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_10_srafile_4_cluster</th>\\n\",\n       \"      <th>run_10_srafile_4_date</th>\\n\",\n       \"      <th>run_10_srafile_4_filename</th>\\n\",\n       \"      <th>run_10_srafile_4_md5</th>\\n\",\n       \"      <th>run_10_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_10_srafile_4_size</th>\\n\",\n       \"      <th>run_10_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_10_srafile_4_supertype</th>\\n\",\n       \"      <th>run_10_srafile_4_url</th>\\n\",\n       \"      <th>run_10_srafile_4_version</th>\\n\",\n       \"      <th>run_10_static_data_available</th>\\n\",\n       \"      <th>run_10_total_base_count</th>\\n\",\n       \"      <th>run_10_total_base_cs_native</th>\\n\",\n       \"      <th>run_10_total_bases</th>\\n\",\n       \"      <th>run_10_total_spots</th>\\n\",\n       \"      <th>run_11_accession</th>\\n\",\n       \"      <th>run_11_alias</th>\\n\",\n       \"      <th>run_11_base_A_count</th>\\n\",\n       \"      <th>run_11_base_C_count</th>\\n\",\n       \"      <th>run_11_base_G_count</th>\\n\",\n       \"      <th>run_11_base_N_count</th>\\n\",\n       \"      <th>run_11_base_T_count</th>\\n\",\n       \"      <th>run_11_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_11_cloudfile_1_location</th>\\n\",\n       \"      <th>run_11_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_11_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_11_cloudfile_2_location</th>\\n\",\n       \"      <th>run_11_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_11_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_11_cloudfile_3_location</th>\\n\",\n       \"      <th>run_11_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_11_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_11_cloudfile_4_location</th>\\n\",\n       \"      <th>run_11_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_11_cluster_name</th>\\n\",\n       \"      <th>run_11_database_1</th>\\n\",\n       \"      <th>run_11_has_taxanalysis</th>\\n\",\n       \"      <th>run_11_is_public</th>\\n\",\n       \"      <th>run_11_load_done</th>\\n\",\n       \"      <th>run_11_published</th>\\n\",\n       \"      <th>run_11_size</th>\\n\",\n       \"      <th>run_11_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_11_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_11_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_11_srafile_1_cluster</th>\\n\",\n       \"      <th>run_11_srafile_1_date</th>\\n\",\n       \"      <th>run_11_srafile_1_filename</th>\\n\",\n       \"      <th>run_11_srafile_1_md5</th>\\n\",\n       \"      <th>run_11_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_11_srafile_1_size</th>\\n\",\n       \"      <th>run_11_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_11_srafile_1_supertype</th>\\n\",\n       \"      <th>run_11_srafile_1_version</th>\\n\",\n       \"      <th>run_11_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_11_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_11_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_11_srafile_2_cluster</th>\\n\",\n       \"      <th>run_11_srafile_2_date</th>\\n\",\n       \"      <th>run_11_srafile_2_filename</th>\\n\",\n       \"      <th>run_11_srafile_2_md5</th>\\n\",\n       \"      <th>run_11_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_11_srafile_2_size</th>\\n\",\n       \"      <th>run_11_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_11_srafile_2_supertype</th>\\n\",\n       \"      <th>run_11_srafile_2_url</th>\\n\",\n       \"      <th>run_11_srafile_2_version</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_11_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_11_srafile_3_cluster</th>\\n\",\n       \"      <th>run_11_srafile_3_date</th>\\n\",\n       \"      <th>run_11_srafile_3_filename</th>\\n\",\n       \"      <th>run_11_srafile_3_md5</th>\\n\",\n       \"      <th>run_11_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_11_srafile_3_size</th>\\n\",\n       \"      <th>run_11_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_11_srafile_3_supertype</th>\\n\",\n       \"      <th>run_11_srafile_3_url</th>\\n\",\n       \"      <th>run_11_srafile_3_version</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_11_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_11_srafile_4_cluster</th>\\n\",\n       \"      <th>run_11_srafile_4_date</th>\\n\",\n       \"      <th>run_11_srafile_4_filename</th>\\n\",\n       \"      <th>run_11_srafile_4_md5</th>\\n\",\n       \"      <th>run_11_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_11_srafile_4_size</th>\\n\",\n       \"      <th>run_11_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_11_srafile_4_supertype</th>\\n\",\n       \"      <th>run_11_srafile_4_url</th>\\n\",\n       \"      <th>run_11_srafile_4_version</th>\\n\",\n       \"      <th>run_11_static_data_available</th>\\n\",\n       \"      <th>run_11_total_base_count</th>\\n\",\n       \"      <th>run_11_total_base_cs_native</th>\\n\",\n       \"      <th>run_11_total_bases</th>\\n\",\n       \"      <th>run_11_total_spots</th>\\n\",\n       \"      <th>run_12_accession</th>\\n\",\n       \"      <th>run_12_alias</th>\\n\",\n       \"      <th>run_12_base_A_count</th>\\n\",\n       \"      <th>run_12_base_C_count</th>\\n\",\n       \"      <th>run_12_base_G_count</th>\\n\",\n       \"      <th>run_12_base_N_count</th>\\n\",\n       \"      <th>run_12_base_T_count</th>\\n\",\n       \"      <th>run_12_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_12_cloudfile_1_location</th>\\n\",\n       \"      <th>run_12_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_12_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_12_cloudfile_2_location</th>\\n\",\n       \"      <th>run_12_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_12_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_12_cloudfile_3_location</th>\\n\",\n       \"      <th>run_12_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_12_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_12_cloudfile_4_location</th>\\n\",\n       \"      <th>run_12_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_12_cluster_name</th>\\n\",\n       \"      <th>run_12_database_1</th>\\n\",\n       \"      <th>run_12_has_taxanalysis</th>\\n\",\n       \"      <th>run_12_is_public</th>\\n\",\n       \"      <th>run_12_load_done</th>\\n\",\n       \"      <th>run_12_published</th>\\n\",\n       \"      <th>run_12_size</th>\\n\",\n       \"      <th>run_12_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_12_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_12_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_12_srafile_1_cluster</th>\\n\",\n       \"      <th>run_12_srafile_1_date</th>\\n\",\n       \"      <th>run_12_srafile_1_filename</th>\\n\",\n       \"      <th>run_12_srafile_1_md5</th>\\n\",\n       \"      <th>run_12_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_12_srafile_1_size</th>\\n\",\n       \"      <th>run_12_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_12_srafile_1_supertype</th>\\n\",\n       \"      <th>run_12_srafile_1_version</th>\\n\",\n       \"      <th>run_12_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_12_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_12_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_12_srafile_2_cluster</th>\\n\",\n       \"      <th>run_12_srafile_2_date</th>\\n\",\n       \"      <th>run_12_srafile_2_filename</th>\\n\",\n       \"      <th>run_12_srafile_2_md5</th>\\n\",\n       \"      <th>run_12_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_12_srafile_2_size</th>\\n\",\n       \"      <th>run_12_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_12_srafile_2_supertype</th>\\n\",\n       \"      <th>run_12_srafile_2_url</th>\\n\",\n       \"      <th>run_12_srafile_2_version</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_12_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_12_srafile_3_cluster</th>\\n\",\n       \"      <th>run_12_srafile_3_date</th>\\n\",\n       \"      <th>run_12_srafile_3_filename</th>\\n\",\n       \"      <th>run_12_srafile_3_md5</th>\\n\",\n       \"      <th>run_12_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_12_srafile_3_size</th>\\n\",\n       \"      <th>run_12_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_12_srafile_3_supertype</th>\\n\",\n       \"      <th>run_12_srafile_3_url</th>\\n\",\n       \"      <th>run_12_srafile_3_version</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_12_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_12_srafile_4_cluster</th>\\n\",\n       \"      <th>run_12_srafile_4_date</th>\\n\",\n       \"      <th>run_12_srafile_4_filename</th>\\n\",\n       \"      <th>run_12_srafile_4_md5</th>\\n\",\n       \"      <th>run_12_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_12_srafile_4_size</th>\\n\",\n       \"      <th>run_12_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_12_srafile_4_supertype</th>\\n\",\n       \"      <th>run_12_srafile_4_url</th>\\n\",\n       \"      <th>run_12_srafile_4_version</th>\\n\",\n       \"      <th>run_12_static_data_available</th>\\n\",\n       \"      <th>run_12_total_base_count</th>\\n\",\n       \"      <th>run_12_total_base_cs_native</th>\\n\",\n       \"      <th>run_12_total_bases</th>\\n\",\n       \"      <th>run_12_total_spots</th>\\n\",\n       \"      <th>run_13_accession</th>\\n\",\n       \"      <th>run_13_alias</th>\\n\",\n       \"      <th>run_13_base_A_count</th>\\n\",\n       \"      <th>run_13_base_C_count</th>\\n\",\n       \"      <th>run_13_base_G_count</th>\\n\",\n       \"      <th>run_13_base_N_count</th>\\n\",\n       \"      <th>run_13_base_T_count</th>\\n\",\n       \"      <th>run_13_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_13_cloudfile_1_location</th>\\n\",\n       \"      <th>run_13_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_13_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_13_cloudfile_2_location</th>\\n\",\n       \"      <th>run_13_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_13_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_13_cloudfile_3_location</th>\\n\",\n       \"      <th>run_13_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_13_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_13_cloudfile_4_location</th>\\n\",\n       \"      <th>run_13_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_13_cluster_name</th>\\n\",\n       \"      <th>run_13_database_1</th>\\n\",\n       \"      <th>run_13_has_taxanalysis</th>\\n\",\n       \"      <th>run_13_is_public</th>\\n\",\n       \"      <th>run_13_load_done</th>\\n\",\n       \"      <th>run_13_published</th>\\n\",\n       \"      <th>run_13_size</th>\\n\",\n       \"      <th>run_13_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_13_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_13_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_13_srafile_1_cluster</th>\\n\",\n       \"      <th>run_13_srafile_1_date</th>\\n\",\n       \"      <th>run_13_srafile_1_filename</th>\\n\",\n       \"      <th>run_13_srafile_1_md5</th>\\n\",\n       \"      <th>run_13_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_13_srafile_1_size</th>\\n\",\n       \"      <th>run_13_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_13_srafile_1_supertype</th>\\n\",\n       \"      <th>run_13_srafile_1_version</th>\\n\",\n       \"      <th>run_13_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_13_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_13_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_13_srafile_2_cluster</th>\\n\",\n       \"      <th>run_13_srafile_2_date</th>\\n\",\n       \"      <th>run_13_srafile_2_filename</th>\\n\",\n       \"      <th>run_13_srafile_2_md5</th>\\n\",\n       \"      <th>run_13_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_13_srafile_2_size</th>\\n\",\n       \"      <th>run_13_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_13_srafile_2_supertype</th>\\n\",\n       \"      <th>run_13_srafile_2_url</th>\\n\",\n       \"      <th>run_13_srafile_2_version</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_13_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_13_srafile_3_cluster</th>\\n\",\n       \"      <th>run_13_srafile_3_date</th>\\n\",\n       \"      <th>run_13_srafile_3_filename</th>\\n\",\n       \"      <th>run_13_srafile_3_md5</th>\\n\",\n       \"      <th>run_13_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_13_srafile_3_size</th>\\n\",\n       \"      <th>run_13_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_13_srafile_3_supertype</th>\\n\",\n       \"      <th>run_13_srafile_3_url</th>\\n\",\n       \"      <th>run_13_srafile_3_version</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_13_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_13_srafile_4_cluster</th>\\n\",\n       \"      <th>run_13_srafile_4_date</th>\\n\",\n       \"      <th>run_13_srafile_4_filename</th>\\n\",\n       \"      <th>run_13_srafile_4_md5</th>\\n\",\n       \"      <th>run_13_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_13_srafile_4_size</th>\\n\",\n       \"      <th>run_13_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_13_srafile_4_supertype</th>\\n\",\n       \"      <th>run_13_srafile_4_url</th>\\n\",\n       \"      <th>run_13_srafile_4_version</th>\\n\",\n       \"      <th>run_13_static_data_available</th>\\n\",\n       \"      <th>run_13_total_base_count</th>\\n\",\n       \"      <th>run_13_total_base_cs_native</th>\\n\",\n       \"      <th>run_13_total_bases</th>\\n\",\n       \"      <th>run_13_total_spots</th>\\n\",\n       \"      <th>run_14_accession</th>\\n\",\n       \"      <th>run_14_alias</th>\\n\",\n       \"      <th>run_14_base_A_count</th>\\n\",\n       \"      <th>run_14_base_C_count</th>\\n\",\n       \"      <th>run_14_base_G_count</th>\\n\",\n       \"      <th>run_14_base_N_count</th>\\n\",\n       \"      <th>run_14_base_T_count</th>\\n\",\n       \"      <th>run_14_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_14_cloudfile_1_location</th>\\n\",\n       \"      <th>run_14_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_14_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_14_cloudfile_2_location</th>\\n\",\n       \"      <th>run_14_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_14_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_14_cloudfile_3_location</th>\\n\",\n       \"      <th>run_14_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_14_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_14_cloudfile_4_location</th>\\n\",\n       \"      <th>run_14_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_14_cluster_name</th>\\n\",\n       \"      <th>run_14_database_1</th>\\n\",\n       \"      <th>run_14_has_taxanalysis</th>\\n\",\n       \"      <th>run_14_is_public</th>\\n\",\n       \"      <th>run_14_load_done</th>\\n\",\n       \"      <th>run_14_published</th>\\n\",\n       \"      <th>run_14_size</th>\\n\",\n       \"      <th>run_14_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_14_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_14_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_14_srafile_1_cluster</th>\\n\",\n       \"      <th>run_14_srafile_1_date</th>\\n\",\n       \"      <th>run_14_srafile_1_filename</th>\\n\",\n       \"      <th>run_14_srafile_1_md5</th>\\n\",\n       \"      <th>run_14_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_14_srafile_1_size</th>\\n\",\n       \"      <th>run_14_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_14_srafile_1_supertype</th>\\n\",\n       \"      <th>run_14_srafile_1_version</th>\\n\",\n       \"      <th>run_14_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_14_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_14_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_14_srafile_2_cluster</th>\\n\",\n       \"      <th>run_14_srafile_2_date</th>\\n\",\n       \"      <th>run_14_srafile_2_filename</th>\\n\",\n       \"      <th>run_14_srafile_2_md5</th>\\n\",\n       \"      <th>run_14_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_14_srafile_2_size</th>\\n\",\n       \"      <th>run_14_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_14_srafile_2_supertype</th>\\n\",\n       \"      <th>run_14_srafile_2_url</th>\\n\",\n       \"      <th>run_14_srafile_2_version</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_14_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_14_srafile_3_cluster</th>\\n\",\n       \"      <th>run_14_srafile_3_date</th>\\n\",\n       \"      <th>run_14_srafile_3_filename</th>\\n\",\n       \"      <th>run_14_srafile_3_md5</th>\\n\",\n       \"      <th>run_14_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_14_srafile_3_size</th>\\n\",\n       \"      <th>run_14_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_14_srafile_3_supertype</th>\\n\",\n       \"      <th>run_14_srafile_3_url</th>\\n\",\n       \"      <th>run_14_srafile_3_version</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_14_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_14_srafile_4_cluster</th>\\n\",\n       \"      <th>run_14_srafile_4_date</th>\\n\",\n       \"      <th>run_14_srafile_4_filename</th>\\n\",\n       \"      <th>run_14_srafile_4_md5</th>\\n\",\n       \"      <th>run_14_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_14_srafile_4_size</th>\\n\",\n       \"      <th>run_14_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_14_srafile_4_supertype</th>\\n\",\n       \"      <th>run_14_srafile_4_url</th>\\n\",\n       \"      <th>run_14_srafile_4_version</th>\\n\",\n       \"      <th>run_14_static_data_available</th>\\n\",\n       \"      <th>run_14_total_base_count</th>\\n\",\n       \"      <th>run_14_total_base_cs_native</th>\\n\",\n       \"      <th>run_14_total_bases</th>\\n\",\n       \"      <th>run_14_total_spots</th>\\n\",\n       \"      <th>run_15_accession</th>\\n\",\n       \"      <th>run_15_alias</th>\\n\",\n       \"      <th>run_15_base_A_count</th>\\n\",\n       \"      <th>run_15_base_C_count</th>\\n\",\n       \"      <th>run_15_base_G_count</th>\\n\",\n       \"      <th>run_15_base_N_count</th>\\n\",\n       \"      <th>run_15_base_T_count</th>\\n\",\n       \"      <th>run_15_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_15_cloudfile_1_location</th>\\n\",\n       \"      <th>run_15_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_15_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_15_cloudfile_2_location</th>\\n\",\n       \"      <th>run_15_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_15_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_15_cloudfile_3_location</th>\\n\",\n       \"      <th>run_15_cloudfile_3_provider</th>\\n\",\n       \"      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<th>run_15_srafile_1_md5</th>\\n\",\n       \"      <th>run_15_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_15_srafile_1_size</th>\\n\",\n       \"      <th>run_15_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_15_srafile_1_supertype</th>\\n\",\n       \"      <th>run_15_srafile_1_version</th>\\n\",\n       \"      <th>run_15_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_15_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_15_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_15_srafile_2_cluster</th>\\n\",\n       \"      <th>run_15_srafile_2_date</th>\\n\",\n       \"      <th>run_15_srafile_2_filename</th>\\n\",\n       \"      <th>run_15_srafile_2_md5</th>\\n\",\n       \"      <th>run_15_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_15_srafile_2_size</th>\\n\",\n       \"      <th>run_15_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_15_srafile_2_supertype</th>\\n\",\n       \"      <th>run_15_srafile_2_url</th>\\n\",\n       \"      <th>run_15_srafile_2_version</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_15_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_15_srafile_3_cluster</th>\\n\",\n       \"      <th>run_15_srafile_3_date</th>\\n\",\n       \"      <th>run_15_srafile_3_filename</th>\\n\",\n       \"      <th>run_15_srafile_3_md5</th>\\n\",\n       \"      <th>run_15_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_15_srafile_3_size</th>\\n\",\n       \"      <th>run_15_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_15_srafile_3_supertype</th>\\n\",\n       \"      <th>run_15_srafile_3_url</th>\\n\",\n       \"      <th>run_15_srafile_3_version</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_15_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_15_srafile_4_cluster</th>\\n\",\n       \"      <th>run_15_srafile_4_date</th>\\n\",\n       \"      <th>run_15_srafile_4_filename</th>\\n\",\n       \"      <th>run_15_srafile_4_md5</th>\\n\",\n       \"      <th>run_15_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_15_srafile_4_size</th>\\n\",\n       \"      <th>run_15_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_15_srafile_4_supertype</th>\\n\",\n       \"      <th>run_15_srafile_4_url</th>\\n\",\n       \"      <th>run_15_srafile_4_version</th>\\n\",\n       \"      <th>run_15_static_data_available</th>\\n\",\n       \"      <th>run_15_total_base_count</th>\\n\",\n       \"      <th>run_15_total_base_cs_native</th>\\n\",\n       \"      <th>run_15_total_bases</th>\\n\",\n       \"      <th>run_15_total_spots</th>\\n\",\n       \"      <th>run_16_accession</th>\\n\",\n       \"      <th>run_16_alias</th>\\n\",\n       \"      <th>run_16_base_A_count</th>\\n\",\n       \"      <th>run_16_base_C_count</th>\\n\",\n       \"      <th>run_16_base_G_count</th>\\n\",\n       \"      <th>run_16_base_N_count</th>\\n\",\n       \"      <th>run_16_base_T_count</th>\\n\",\n       \"      <th>run_16_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_16_cloudfile_1_location</th>\\n\",\n       \"      <th>run_16_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_16_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_16_cloudfile_2_location</th>\\n\",\n       \"      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<th>run_16_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_16_srafile_1_cluster</th>\\n\",\n       \"      <th>run_16_srafile_1_date</th>\\n\",\n       \"      <th>run_16_srafile_1_filename</th>\\n\",\n       \"      <th>run_16_srafile_1_md5</th>\\n\",\n       \"      <th>run_16_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_16_srafile_1_size</th>\\n\",\n       \"      <th>run_16_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_16_srafile_1_supertype</th>\\n\",\n       \"      <th>run_16_srafile_1_version</th>\\n\",\n       \"      <th>run_16_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_16_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_16_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_16_srafile_2_cluster</th>\\n\",\n       \"      <th>run_16_srafile_2_date</th>\\n\",\n       \"      <th>run_16_srafile_2_filename</th>\\n\",\n       \"      <th>run_16_srafile_2_md5</th>\\n\",\n       \"      <th>run_16_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_16_srafile_2_size</th>\\n\",\n       \"      <th>run_16_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_16_srafile_2_supertype</th>\\n\",\n       \"      <th>run_16_srafile_2_url</th>\\n\",\n       \"      <th>run_16_srafile_2_version</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_16_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_16_srafile_3_cluster</th>\\n\",\n       \"      <th>run_16_srafile_3_date</th>\\n\",\n       \"      <th>run_16_srafile_3_filename</th>\\n\",\n       \"      <th>run_16_srafile_3_md5</th>\\n\",\n       \"      <th>run_16_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_16_srafile_3_size</th>\\n\",\n       \"      <th>run_16_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_16_srafile_3_supertype</th>\\n\",\n       \"      <th>run_16_srafile_3_url</th>\\n\",\n       \"      <th>run_16_srafile_3_version</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_16_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_16_srafile_4_cluster</th>\\n\",\n       \"      <th>run_16_srafile_4_date</th>\\n\",\n       \"      <th>run_16_srafile_4_filename</th>\\n\",\n       \"      <th>run_16_srafile_4_md5</th>\\n\",\n       \"      <th>run_16_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_16_srafile_4_size</th>\\n\",\n       \"      <th>run_16_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_16_srafile_4_supertype</th>\\n\",\n       \"      <th>run_16_srafile_4_url</th>\\n\",\n       \"      <th>run_16_srafile_4_version</th>\\n\",\n       \"      <th>run_16_static_data_available</th>\\n\",\n       \"      <th>run_16_total_base_count</th>\\n\",\n       \"      <th>run_16_total_base_cs_native</th>\\n\",\n       \"      <th>run_16_total_bases</th>\\n\",\n       \"      <th>run_16_total_spots</th>\\n\",\n       \"      <th>run_17_accession</th>\\n\",\n       \"      <th>run_17_alias</th>\\n\",\n       \"      <th>run_17_base_A_count</th>\\n\",\n       \"      <th>run_17_base_C_count</th>\\n\",\n       \"      <th>run_17_base_G_count</th>\\n\",\n       \"      <th>run_17_base_N_count</th>\\n\",\n       \"      <th>run_17_base_T_count</th>\\n\",\n       \"      <th>run_17_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_17_cloudfile_1_location</th>\\n\",\n       \"      <th>run_17_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_17_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_17_cloudfile_2_location</th>\\n\",\n       \"      <th>run_17_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_17_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_17_cloudfile_3_location</th>\\n\",\n       \"      <th>run_17_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_17_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_17_cloudfile_4_location</th>\\n\",\n       \"      <th>run_17_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_17_cluster_name</th>\\n\",\n       \"      <th>run_17_database_1</th>\\n\",\n       \"      <th>run_17_has_taxanalysis</th>\\n\",\n       \"      <th>run_17_is_public</th>\\n\",\n       \"      <th>run_17_load_done</th>\\n\",\n       \"      <th>run_17_published</th>\\n\",\n       \"      <th>run_17_size</th>\\n\",\n       \"      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<th>run_17_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_17_srafile_2_cluster</th>\\n\",\n       \"      <th>run_17_srafile_2_date</th>\\n\",\n       \"      <th>run_17_srafile_2_filename</th>\\n\",\n       \"      <th>run_17_srafile_2_md5</th>\\n\",\n       \"      <th>run_17_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_17_srafile_2_size</th>\\n\",\n       \"      <th>run_17_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_17_srafile_2_supertype</th>\\n\",\n       \"      <th>run_17_srafile_2_url</th>\\n\",\n       \"      <th>run_17_srafile_2_version</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_17_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_17_srafile_3_cluster</th>\\n\",\n       \"      <th>run_17_srafile_3_date</th>\\n\",\n       \"      <th>run_17_srafile_3_filename</th>\\n\",\n       \"      <th>run_17_srafile_3_md5</th>\\n\",\n       \"      <th>run_17_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_17_srafile_3_size</th>\\n\",\n       \"      <th>run_17_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_17_srafile_3_supertype</th>\\n\",\n       \"      <th>run_17_srafile_3_url</th>\\n\",\n       \"      <th>run_17_srafile_3_version</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_17_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_17_srafile_4_cluster</th>\\n\",\n       \"      <th>run_17_srafile_4_date</th>\\n\",\n       \"      <th>run_17_srafile_4_filename</th>\\n\",\n       \"      <th>run_17_srafile_4_md5</th>\\n\",\n       \"      <th>run_17_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_17_srafile_4_size</th>\\n\",\n       \"      <th>run_17_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_17_srafile_4_supertype</th>\\n\",\n       \"      <th>run_17_srafile_4_url</th>\\n\",\n       \"      <th>run_17_srafile_4_version</th>\\n\",\n       \"      <th>run_17_static_data_available</th>\\n\",\n       \"      <th>run_17_total_base_count</th>\\n\",\n       \"      <th>run_17_total_base_cs_native</th>\\n\",\n       \"      <th>run_17_total_bases</th>\\n\",\n       \"      <th>run_17_total_spots</th>\\n\",\n       \"      <th>run_18_accession</th>\\n\",\n       \"      <th>run_18_alias</th>\\n\",\n       \"      <th>run_18_base_A_count</th>\\n\",\n       \"      <th>run_18_base_C_count</th>\\n\",\n       \"      <th>run_18_base_G_count</th>\\n\",\n       \"      <th>run_18_base_N_count</th>\\n\",\n       \"      <th>run_18_base_T_count</th>\\n\",\n       \"      <th>run_18_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_18_cloudfile_1_location</th>\\n\",\n       \"      <th>run_18_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_18_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_18_cloudfile_2_location</th>\\n\",\n       \"      <th>run_18_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_18_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_18_cloudfile_3_location</th>\\n\",\n       \"      <th>run_18_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_18_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_18_cloudfile_4_location</th>\\n\",\n       \"      <th>run_18_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_18_cluster_name</th>\\n\",\n       \"      <th>run_18_database_1</th>\\n\",\n       \"      <th>run_18_has_taxanalysis</th>\\n\",\n       \"      <th>run_18_is_public</th>\\n\",\n       \"      <th>run_18_load_done</th>\\n\",\n       \"      <th>run_18_published</th>\\n\",\n       \"      <th>run_18_size</th>\\n\",\n       \"      <th>run_18_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_18_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_18_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_18_srafile_1_cluster</th>\\n\",\n       \"      <th>run_18_srafile_1_date</th>\\n\",\n       \"      <th>run_18_srafile_1_filename</th>\\n\",\n       \"      <th>run_18_srafile_1_md5</th>\\n\",\n       \"      <th>run_18_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_18_srafile_1_size</th>\\n\",\n       \"      <th>run_18_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_18_srafile_1_supertype</th>\\n\",\n       \"      <th>run_18_srafile_1_version</th>\\n\",\n       \"      <th>run_18_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_18_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_18_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_18_srafile_2_cluster</th>\\n\",\n       \"      <th>run_18_srafile_2_date</th>\\n\",\n       \"      <th>run_18_srafile_2_filename</th>\\n\",\n       \"      <th>run_18_srafile_2_md5</th>\\n\",\n       \"      <th>run_18_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_18_srafile_2_size</th>\\n\",\n       \"      <th>run_18_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_18_srafile_2_supertype</th>\\n\",\n       \"      <th>run_18_srafile_2_url</th>\\n\",\n       \"      <th>run_18_srafile_2_version</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_18_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_18_srafile_3_cluster</th>\\n\",\n       \"      <th>run_18_srafile_3_date</th>\\n\",\n       \"      <th>run_18_srafile_3_filename</th>\\n\",\n       \"      <th>run_18_srafile_3_md5</th>\\n\",\n       \"      <th>run_18_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_18_srafile_3_size</th>\\n\",\n       \"      <th>run_18_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_18_srafile_3_supertype</th>\\n\",\n       \"      <th>run_18_srafile_3_url</th>\\n\",\n       \"      <th>run_18_srafile_3_version</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_18_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_18_srafile_4_cluster</th>\\n\",\n       \"      <th>run_18_srafile_4_date</th>\\n\",\n       \"      <th>run_18_srafile_4_filename</th>\\n\",\n       \"      <th>run_18_srafile_4_md5</th>\\n\",\n       \"      <th>run_18_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_18_srafile_4_size</th>\\n\",\n       \"      <th>run_18_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_18_srafile_4_supertype</th>\\n\",\n       \"      <th>run_18_srafile_4_url</th>\\n\",\n       \"      <th>run_18_srafile_4_version</th>\\n\",\n       \"      <th>run_18_static_data_available</th>\\n\",\n       \"      <th>run_18_total_base_count</th>\\n\",\n       \"      <th>run_18_total_base_cs_native</th>\\n\",\n       \"      <th>run_18_total_bases</th>\\n\",\n       \"      <th>run_18_total_spots</th>\\n\",\n       \"      <th>run_19_accession</th>\\n\",\n       \"      <th>run_19_alias</th>\\n\",\n       \"      <th>run_19_base_A_count</th>\\n\",\n       \"      <th>run_19_base_C_count</th>\\n\",\n       \"      <th>run_19_base_G_count</th>\\n\",\n       \"      <th>run_19_base_N_count</th>\\n\",\n       \"      <th>run_19_base_T_count</th>\\n\",\n       \"      <th>run_19_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_19_cloudfile_1_location</th>\\n\",\n       \"      <th>run_19_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_19_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_19_cloudfile_2_location</th>\\n\",\n       \"      <th>run_19_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_19_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_19_cloudfile_3_location</th>\\n\",\n       \"      <th>run_19_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_19_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_19_cloudfile_4_location</th>\\n\",\n       \"      <th>run_19_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_19_cluster_name</th>\\n\",\n       \"      <th>run_19_database_1</th>\\n\",\n       \"      <th>run_19_has_taxanalysis</th>\\n\",\n       \"      <th>run_19_is_public</th>\\n\",\n       \"      <th>run_19_load_done</th>\\n\",\n       \"      <th>run_19_published</th>\\n\",\n       \"      <th>run_19_size</th>\\n\",\n       \"      <th>run_19_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_19_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_19_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_19_srafile_1_cluster</th>\\n\",\n       \"      <th>run_19_srafile_1_date</th>\\n\",\n       \"      <th>run_19_srafile_1_filename</th>\\n\",\n       \"      <th>run_19_srafile_1_md5</th>\\n\",\n       \"      <th>run_19_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_19_srafile_1_size</th>\\n\",\n       \"      <th>run_19_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_19_srafile_1_supertype</th>\\n\",\n       \"      <th>run_19_srafile_1_version</th>\\n\",\n       \"      <th>run_19_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_19_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_19_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_19_srafile_2_cluster</th>\\n\",\n       \"      <th>run_19_srafile_2_date</th>\\n\",\n       \"      <th>run_19_srafile_2_filename</th>\\n\",\n       \"      <th>run_19_srafile_2_md5</th>\\n\",\n       \"      <th>run_19_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_19_srafile_2_size</th>\\n\",\n       \"      <th>run_19_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_19_srafile_2_supertype</th>\\n\",\n       \"      <th>run_19_srafile_2_url</th>\\n\",\n       \"      <th>run_19_srafile_2_version</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_19_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_19_srafile_3_cluster</th>\\n\",\n       \"      <th>run_19_srafile_3_date</th>\\n\",\n       \"      <th>run_19_srafile_3_filename</th>\\n\",\n       \"      <th>run_19_srafile_3_md5</th>\\n\",\n       \"      <th>run_19_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_19_srafile_3_size</th>\\n\",\n       \"      <th>run_19_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_19_srafile_3_supertype</th>\\n\",\n       \"      <th>run_19_srafile_3_url</th>\\n\",\n       \"      <th>run_19_srafile_3_version</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_19_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_19_srafile_4_cluster</th>\\n\",\n       \"      <th>run_19_srafile_4_date</th>\\n\",\n       \"      <th>run_19_srafile_4_filename</th>\\n\",\n       \"      <th>run_19_srafile_4_md5</th>\\n\",\n       \"      <th>run_19_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_19_srafile_4_size</th>\\n\",\n       \"      <th>run_19_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_19_srafile_4_supertype</th>\\n\",\n       \"      <th>run_19_srafile_4_url</th>\\n\",\n       \"      <th>run_19_srafile_4_version</th>\\n\",\n       \"      <th>run_19_static_data_available</th>\\n\",\n       \"      <th>run_19_total_base_count</th>\\n\",\n       \"      <th>run_19_total_base_cs_native</th>\\n\",\n       \"      <th>run_19_total_bases</th>\\n\",\n       \"      <th>run_19_total_spots</th>\\n\",\n       \"      <th>run_1_alias</th>\\n\",\n       \"      <th>run_1_assembly</th>\\n\",\n       \"      <th>run_1_base_A_count</th>\\n\",\n       \"      <th>run_1_base_C_count</th>\\n\",\n       \"      <th>run_1_base_G_count</th>\\n\",\n       \"      <th>run_1_base_N_count</th>\\n\",\n       \"      <th>run_1_base_T_count</th>\\n\",\n       \"      <th>run_1_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_1_cloudfile_1_location</th>\\n\",\n       \"      <th>run_1_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_1_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_1_cloudfile_2_location</th>\\n\",\n       \"      <th>run_1_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_1_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_1_cloudfile_3_location</th>\\n\",\n       \"      <th>run_1_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_1_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_1_cloudfile_4_location</th>\\n\",\n       \"      <th>run_1_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_1_cluster_name</th>\\n\",\n       \"      <th>run_1_database_1</th>\\n\",\n       \"      <th>run_1_has_taxanalysis</th>\\n\",\n       \"      <th>run_1_is_public</th>\\n\",\n       \"      <th>run_1_load_done</th>\\n\",\n       \"      <th>run_1_published</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_1_cluster</th>\\n\",\n       \"      <th>run_1_srafile_1_date</th>\\n\",\n       \"      <th>run_1_srafile_1_filename</th>\\n\",\n       \"      <th>run_1_srafile_1_md5</th>\\n\",\n       \"      <th>run_1_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_1_size</th>\\n\",\n       \"      <th>run_1_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_1_supertype</th>\\n\",\n       \"      <th>run_1_srafile_1_url</th>\\n\",\n       \"      <th>run_1_srafile_1_version</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_2_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_2_cluster</th>\\n\",\n       \"      <th>run_1_srafile_2_date</th>\\n\",\n       \"      <th>run_1_srafile_2_filename</th>\\n\",\n       \"      <th>run_1_srafile_2_md5</th>\\n\",\n       \"      <th>run_1_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_2_size</th>\\n\",\n       \"      <th>run_1_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_2_supertype</th>\\n\",\n       \"      <th>run_1_srafile_2_url</th>\\n\",\n       \"      <th>run_1_srafile_2_version</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_3_cluster</th>\\n\",\n       \"      <th>run_1_srafile_3_date</th>\\n\",\n       \"      <th>run_1_srafile_3_filename</th>\\n\",\n       \"      <th>run_1_srafile_3_md5</th>\\n\",\n       \"      <th>run_1_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_3_size</th>\\n\",\n       \"      <th>run_1_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_3_supertype</th>\\n\",\n       \"      <th>run_1_srafile_3_url</th>\\n\",\n       \"      <th>run_1_srafile_3_version</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_4_cluster</th>\\n\",\n       \"      <th>run_1_srafile_4_date</th>\\n\",\n       \"      <th>run_1_srafile_4_filename</th>\\n\",\n       \"      <th>run_1_srafile_4_md5</th>\\n\",\n       \"      <th>run_1_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_4_size</th>\\n\",\n       \"      <th>run_1_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_4_supertype</th>\\n\",\n       \"      <th>run_1_srafile_4_url</th>\\n\",\n       \"      <th>run_1_srafile_4_version</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_5_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_5_cluster</th>\\n\",\n       \"      <th>run_1_srafile_5_date</th>\\n\",\n       \"      <th>run_1_srafile_5_filename</th>\\n\",\n       \"      <th>run_1_srafile_5_md5</th>\\n\",\n       \"      <th>run_1_srafile_5_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_5_size</th>\\n\",\n       \"      <th>run_1_srafile_5_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_5_supertype</th>\\n\",\n       \"      <th>run_1_srafile_5_url</th>\\n\",\n       \"      <th>run_1_srafile_5_version</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_1_access_type</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_1_org</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_1_url</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_2_access_type</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_2_org</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_2_url</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_3_access_type</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_3_org</th>\\n\",\n       \"      <th>run_1_srafile_6_alternative_3_url</th>\\n\",\n       \"      <th>run_1_srafile_6_cluster</th>\\n\",\n       \"      <th>run_1_srafile_6_date</th>\\n\",\n       \"      <th>run_1_srafile_6_filename</th>\\n\",\n       \"      <th>run_1_srafile_6_md5</th>\\n\",\n       \"      <th>run_1_srafile_6_semantic_name</th>\\n\",\n       \"      <th>run_1_srafile_6_size</th>\\n\",\n       \"      <th>run_1_srafile_6_sratoolkit</th>\\n\",\n       \"      <th>run_1_srafile_6_supertype</th>\\n\",\n       \"      <th>run_1_srafile_6_url</th>\\n\",\n       \"      <th>run_1_srafile_6_version</th>\\n\",\n       \"      <th>run_1_static_data_available</th>\\n\",\n       \"      <th>run_1_total_base_count</th>\\n\",\n       \"      <th>run_1_total_base_cs_native</th>\\n\",\n       \"      <th>run_20_accession</th>\\n\",\n       \"      <th>run_20_alias</th>\\n\",\n       \"      <th>run_20_base_A_count</th>\\n\",\n       \"      <th>run_20_base_C_count</th>\\n\",\n       \"      <th>run_20_base_G_count</th>\\n\",\n       \"      <th>run_20_base_N_count</th>\\n\",\n       \"      <th>run_20_base_T_count</th>\\n\",\n       \"      <th>run_20_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_20_cloudfile_1_location</th>\\n\",\n       \"      <th>run_20_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_20_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_20_cloudfile_2_location</th>\\n\",\n       \"      <th>run_20_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_20_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_20_cloudfile_3_location</th>\\n\",\n       \"      <th>run_20_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_20_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_20_cloudfile_4_location</th>\\n\",\n       \"      <th>run_20_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_20_cluster_name</th>\\n\",\n       \"      <th>run_20_database_1</th>\\n\",\n       \"      <th>run_20_has_taxanalysis</th>\\n\",\n       \"      <th>run_20_is_public</th>\\n\",\n       \"      <th>run_20_load_done</th>\\n\",\n       \"      <th>run_20_published</th>\\n\",\n       \"      <th>run_20_size</th>\\n\",\n       \"      <th>run_20_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_20_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_20_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_20_srafile_1_cluster</th>\\n\",\n       \"      <th>run_20_srafile_1_date</th>\\n\",\n       \"      <th>run_20_srafile_1_filename</th>\\n\",\n       \"      <th>run_20_srafile_1_md5</th>\\n\",\n       \"      <th>run_20_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_20_srafile_1_size</th>\\n\",\n       \"      <th>run_20_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_20_srafile_1_supertype</th>\\n\",\n       \"      <th>run_20_srafile_1_version</th>\\n\",\n       \"      <th>run_20_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_20_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_20_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_20_srafile_2_cluster</th>\\n\",\n       \"      <th>run_20_srafile_2_date</th>\\n\",\n       \"      <th>run_20_srafile_2_filename</th>\\n\",\n       \"      <th>run_20_srafile_2_md5</th>\\n\",\n       \"      <th>run_20_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_20_srafile_2_size</th>\\n\",\n       \"      <th>run_20_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_20_srafile_2_supertype</th>\\n\",\n       \"      <th>run_20_srafile_2_url</th>\\n\",\n       \"      <th>run_20_srafile_2_version</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_20_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_20_srafile_3_cluster</th>\\n\",\n       \"      <th>run_20_srafile_3_date</th>\\n\",\n       \"      <th>run_20_srafile_3_filename</th>\\n\",\n       \"      <th>run_20_srafile_3_md5</th>\\n\",\n       \"      <th>run_20_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_20_srafile_3_size</th>\\n\",\n       \"      <th>run_20_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_20_srafile_3_supertype</th>\\n\",\n       \"      <th>run_20_srafile_3_url</th>\\n\",\n       \"      <th>run_20_srafile_3_version</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_20_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_20_srafile_4_cluster</th>\\n\",\n       \"      <th>run_20_srafile_4_date</th>\\n\",\n       \"      <th>run_20_srafile_4_filename</th>\\n\",\n       \"      <th>run_20_srafile_4_md5</th>\\n\",\n       \"      <th>run_20_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_20_srafile_4_size</th>\\n\",\n       \"      <th>run_20_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_20_srafile_4_supertype</th>\\n\",\n       \"      <th>run_20_srafile_4_url</th>\\n\",\n       \"      <th>run_20_srafile_4_version</th>\\n\",\n       \"      <th>run_20_static_data_available</th>\\n\",\n       \"      <th>run_20_total_base_count</th>\\n\",\n       \"      <th>run_20_total_base_cs_native</th>\\n\",\n       \"      <th>run_20_total_bases</th>\\n\",\n       \"      <th>run_20_total_spots</th>\\n\",\n       \"      <th>run_21_accession</th>\\n\",\n       \"      <th>run_21_alias</th>\\n\",\n       \"      <th>run_21_base_A_count</th>\\n\",\n       \"      <th>run_21_base_C_count</th>\\n\",\n       \"      <th>run_21_base_G_count</th>\\n\",\n       \"      <th>run_21_base_N_count</th>\\n\",\n       \"      <th>run_21_base_T_count</th>\\n\",\n       \"      <th>run_21_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_21_cloudfile_1_location</th>\\n\",\n       \"      <th>run_21_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_21_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_21_cloudfile_2_location</th>\\n\",\n       \"      <th>run_21_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_21_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_21_cloudfile_3_location</th>\\n\",\n       \"      <th>run_21_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_21_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_21_cloudfile_4_location</th>\\n\",\n       \"      <th>run_21_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_21_cluster_name</th>\\n\",\n       \"      <th>run_21_database_1</th>\\n\",\n       \"      <th>run_21_has_taxanalysis</th>\\n\",\n       \"      <th>run_21_is_public</th>\\n\",\n       \"      <th>run_21_load_done</th>\\n\",\n       \"      <th>run_21_published</th>\\n\",\n       \"      <th>run_21_size</th>\\n\",\n       \"      <th>run_21_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_21_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_21_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_21_srafile_1_cluster</th>\\n\",\n       \"      <th>run_21_srafile_1_date</th>\\n\",\n       \"      <th>run_21_srafile_1_filename</th>\\n\",\n       \"      <th>run_21_srafile_1_md5</th>\\n\",\n       \"      <th>run_21_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_21_srafile_1_size</th>\\n\",\n       \"      <th>run_21_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_21_srafile_1_supertype</th>\\n\",\n       \"      <th>run_21_srafile_1_version</th>\\n\",\n       \"      <th>run_21_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_21_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_21_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_21_srafile_2_cluster</th>\\n\",\n       \"      <th>run_21_srafile_2_date</th>\\n\",\n       \"      <th>run_21_srafile_2_filename</th>\\n\",\n       \"      <th>run_21_srafile_2_md5</th>\\n\",\n       \"      <th>run_21_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_21_srafile_2_size</th>\\n\",\n       \"      <th>run_21_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_21_srafile_2_supertype</th>\\n\",\n       \"      <th>run_21_srafile_2_url</th>\\n\",\n       \"      <th>run_21_srafile_2_version</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_21_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_21_srafile_3_cluster</th>\\n\",\n       \"      <th>run_21_srafile_3_date</th>\\n\",\n       \"      <th>run_21_srafile_3_filename</th>\\n\",\n       \"      <th>run_21_srafile_3_md5</th>\\n\",\n       \"      <th>run_21_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_21_srafile_3_size</th>\\n\",\n       \"      <th>run_21_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_21_srafile_3_supertype</th>\\n\",\n       \"      <th>run_21_srafile_3_url</th>\\n\",\n       \"      <th>run_21_srafile_3_version</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_21_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_21_srafile_4_cluster</th>\\n\",\n       \"      <th>run_21_srafile_4_date</th>\\n\",\n       \"      <th>run_21_srafile_4_filename</th>\\n\",\n       \"      <th>run_21_srafile_4_md5</th>\\n\",\n       \"      <th>run_21_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_21_srafile_4_size</th>\\n\",\n       \"      <th>run_21_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_21_srafile_4_supertype</th>\\n\",\n       \"      <th>run_21_srafile_4_url</th>\\n\",\n       \"      <th>run_21_srafile_4_version</th>\\n\",\n       \"      <th>run_21_static_data_available</th>\\n\",\n       \"      <th>run_21_total_base_count</th>\\n\",\n       \"      <th>run_21_total_base_cs_native</th>\\n\",\n       \"      <th>run_21_total_bases</th>\\n\",\n       \"      <th>run_21_total_spots</th>\\n\",\n       \"      <th>run_22_accession</th>\\n\",\n       \"      <th>run_22_alias</th>\\n\",\n       \"      <th>run_22_base_A_count</th>\\n\",\n       \"      <th>run_22_base_C_count</th>\\n\",\n       \"      <th>run_22_base_G_count</th>\\n\",\n       \"      <th>run_22_base_N_count</th>\\n\",\n       \"      <th>run_22_base_T_count</th>\\n\",\n       \"      <th>run_22_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_22_cloudfile_1_location</th>\\n\",\n       \"      <th>run_22_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_22_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_22_cloudfile_2_location</th>\\n\",\n       \"      <th>run_22_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_22_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_22_cloudfile_3_location</th>\\n\",\n       \"      <th>run_22_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_22_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_22_cloudfile_4_location</th>\\n\",\n       \"      <th>run_22_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_22_cluster_name</th>\\n\",\n       \"      <th>run_22_database_1</th>\\n\",\n       \"      <th>run_22_has_taxanalysis</th>\\n\",\n       \"      <th>run_22_is_public</th>\\n\",\n       \"      <th>run_22_load_done</th>\\n\",\n       \"      <th>run_22_published</th>\\n\",\n       \"      <th>run_22_size</th>\\n\",\n       \"      <th>run_22_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_22_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_22_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_22_srafile_1_cluster</th>\\n\",\n       \"      <th>run_22_srafile_1_date</th>\\n\",\n       \"      <th>run_22_srafile_1_filename</th>\\n\",\n       \"      <th>run_22_srafile_1_md5</th>\\n\",\n       \"      <th>run_22_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_22_srafile_1_size</th>\\n\",\n       \"      <th>run_22_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_22_srafile_1_supertype</th>\\n\",\n       \"      <th>run_22_srafile_1_version</th>\\n\",\n       \"      <th>run_22_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_22_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_22_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_22_srafile_2_cluster</th>\\n\",\n       \"      <th>run_22_srafile_2_date</th>\\n\",\n       \"      <th>run_22_srafile_2_filename</th>\\n\",\n       \"      <th>run_22_srafile_2_md5</th>\\n\",\n       \"      <th>run_22_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_22_srafile_2_size</th>\\n\",\n       \"      <th>run_22_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_22_srafile_2_supertype</th>\\n\",\n       \"      <th>run_22_srafile_2_url</th>\\n\",\n       \"      <th>run_22_srafile_2_version</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_22_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_22_srafile_3_cluster</th>\\n\",\n       \"      <th>run_22_srafile_3_date</th>\\n\",\n       \"      <th>run_22_srafile_3_filename</th>\\n\",\n       \"      <th>run_22_srafile_3_md5</th>\\n\",\n       \"      <th>run_22_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_22_srafile_3_size</th>\\n\",\n       \"      <th>run_22_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_22_srafile_3_supertype</th>\\n\",\n       \"      <th>run_22_srafile_3_url</th>\\n\",\n       \"      <th>run_22_srafile_3_version</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_22_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_22_srafile_4_cluster</th>\\n\",\n       \"      <th>run_22_srafile_4_date</th>\\n\",\n       \"      <th>run_22_srafile_4_filename</th>\\n\",\n       \"      <th>run_22_srafile_4_md5</th>\\n\",\n       \"      <th>run_22_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_22_srafile_4_size</th>\\n\",\n       \"      <th>run_22_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_22_srafile_4_supertype</th>\\n\",\n       \"      <th>run_22_srafile_4_url</th>\\n\",\n       \"      <th>run_22_srafile_4_version</th>\\n\",\n       \"      <th>run_22_static_data_available</th>\\n\",\n       \"      <th>run_22_total_base_count</th>\\n\",\n       \"      <th>run_22_total_base_cs_native</th>\\n\",\n       \"      <th>run_22_total_bases</th>\\n\",\n       \"      <th>run_22_total_spots</th>\\n\",\n       \"      <th>run_23_accession</th>\\n\",\n       \"      <th>run_23_alias</th>\\n\",\n       \"      <th>run_23_base_A_count</th>\\n\",\n       \"      <th>run_23_base_C_count</th>\\n\",\n       \"      <th>run_23_base_G_count</th>\\n\",\n       \"      <th>run_23_base_N_count</th>\\n\",\n       \"      <th>run_23_base_T_count</th>\\n\",\n       \"      <th>run_23_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_23_cloudfile_1_location</th>\\n\",\n       \"      <th>run_23_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_23_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_23_cloudfile_2_location</th>\\n\",\n       \"      <th>run_23_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_23_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_23_cloudfile_3_location</th>\\n\",\n       \"      <th>run_23_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_23_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_23_cloudfile_4_location</th>\\n\",\n       \"      <th>run_23_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_23_cluster_name</th>\\n\",\n       \"      <th>run_23_database_1</th>\\n\",\n       \"      <th>run_23_has_taxanalysis</th>\\n\",\n       \"      <th>run_23_is_public</th>\\n\",\n       \"      <th>run_23_load_done</th>\\n\",\n       \"      <th>run_23_published</th>\\n\",\n       \"      <th>run_23_size</th>\\n\",\n       \"      <th>run_23_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_23_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_23_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_23_srafile_1_cluster</th>\\n\",\n       \"      <th>run_23_srafile_1_date</th>\\n\",\n       \"      <th>run_23_srafile_1_filename</th>\\n\",\n       \"      <th>run_23_srafile_1_md5</th>\\n\",\n       \"      <th>run_23_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_23_srafile_1_size</th>\\n\",\n       \"      <th>run_23_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_23_srafile_1_supertype</th>\\n\",\n       \"      <th>run_23_srafile_1_version</th>\\n\",\n       \"      <th>run_23_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_23_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_23_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_23_srafile_2_cluster</th>\\n\",\n       \"      <th>run_23_srafile_2_date</th>\\n\",\n       \"      <th>run_23_srafile_2_filename</th>\\n\",\n       \"      <th>run_23_srafile_2_md5</th>\\n\",\n       \"      <th>run_23_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_23_srafile_2_size</th>\\n\",\n       \"      <th>run_23_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_23_srafile_2_supertype</th>\\n\",\n       \"      <th>run_23_srafile_2_url</th>\\n\",\n       \"      <th>run_23_srafile_2_version</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_23_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_23_srafile_3_cluster</th>\\n\",\n       \"      <th>run_23_srafile_3_date</th>\\n\",\n       \"      <th>run_23_srafile_3_filename</th>\\n\",\n       \"      <th>run_23_srafile_3_md5</th>\\n\",\n       \"      <th>run_23_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_23_srafile_3_size</th>\\n\",\n       \"      <th>run_23_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_23_srafile_3_supertype</th>\\n\",\n       \"      <th>run_23_srafile_3_url</th>\\n\",\n       \"      <th>run_23_srafile_3_version</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_23_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_23_srafile_4_cluster</th>\\n\",\n       \"      <th>run_23_srafile_4_date</th>\\n\",\n       \"      <th>run_23_srafile_4_filename</th>\\n\",\n       \"      <th>run_23_srafile_4_md5</th>\\n\",\n       \"      <th>run_23_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_23_srafile_4_size</th>\\n\",\n       \"      <th>run_23_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_23_srafile_4_supertype</th>\\n\",\n       \"      <th>run_23_srafile_4_url</th>\\n\",\n       \"      <th>run_23_srafile_4_version</th>\\n\",\n       \"      <th>run_23_static_data_available</th>\\n\",\n       \"      <th>run_23_total_base_count</th>\\n\",\n       \"      <th>run_23_total_base_cs_native</th>\\n\",\n       \"      <th>run_23_total_bases</th>\\n\",\n       \"      <th>run_23_total_spots</th>\\n\",\n       \"      <th>run_24_accession</th>\\n\",\n       \"      <th>run_24_alias</th>\\n\",\n       \"      <th>run_24_base_A_count</th>\\n\",\n       \"      <th>run_24_base_C_count</th>\\n\",\n       \"      <th>run_24_base_G_count</th>\\n\",\n       \"      <th>run_24_base_N_count</th>\\n\",\n       \"      <th>run_24_base_T_count</th>\\n\",\n       \"      <th>run_24_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_24_cloudfile_1_location</th>\\n\",\n       \"      <th>run_24_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_24_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_24_cloudfile_2_location</th>\\n\",\n       \"      <th>run_24_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_24_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_24_cloudfile_3_location</th>\\n\",\n       \"      <th>run_24_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_24_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_24_cloudfile_4_location</th>\\n\",\n       \"      <th>run_24_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_24_cluster_name</th>\\n\",\n       \"      <th>run_24_database_1</th>\\n\",\n       \"      <th>run_24_has_taxanalysis</th>\\n\",\n       \"      <th>run_24_is_public</th>\\n\",\n       \"      <th>run_24_load_done</th>\\n\",\n       \"      <th>run_24_published</th>\\n\",\n       \"      <th>run_24_size</th>\\n\",\n       \"      <th>run_24_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_24_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_24_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_24_srafile_1_cluster</th>\\n\",\n       \"      <th>run_24_srafile_1_date</th>\\n\",\n       \"      <th>run_24_srafile_1_filename</th>\\n\",\n       \"      <th>run_24_srafile_1_md5</th>\\n\",\n       \"      <th>run_24_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_24_srafile_1_size</th>\\n\",\n       \"      <th>run_24_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_24_srafile_1_supertype</th>\\n\",\n       \"      <th>run_24_srafile_1_version</th>\\n\",\n       \"      <th>run_24_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_24_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_24_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_24_srafile_2_cluster</th>\\n\",\n       \"      <th>run_24_srafile_2_date</th>\\n\",\n       \"      <th>run_24_srafile_2_filename</th>\\n\",\n       \"      <th>run_24_srafile_2_md5</th>\\n\",\n       \"      <th>run_24_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_24_srafile_2_size</th>\\n\",\n       \"      <th>run_24_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_24_srafile_2_supertype</th>\\n\",\n       \"      <th>run_24_srafile_2_url</th>\\n\",\n       \"      <th>run_24_srafile_2_version</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_24_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_24_srafile_3_cluster</th>\\n\",\n       \"      <th>run_24_srafile_3_date</th>\\n\",\n       \"      <th>run_24_srafile_3_filename</th>\\n\",\n       \"      <th>run_24_srafile_3_md5</th>\\n\",\n       \"      <th>run_24_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_24_srafile_3_size</th>\\n\",\n       \"      <th>run_24_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_24_srafile_3_supertype</th>\\n\",\n       \"      <th>run_24_srafile_3_url</th>\\n\",\n       \"      <th>run_24_srafile_3_version</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_24_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_24_srafile_4_cluster</th>\\n\",\n       \"      <th>run_24_srafile_4_date</th>\\n\",\n       \"      <th>run_24_srafile_4_filename</th>\\n\",\n       \"      <th>run_24_srafile_4_md5</th>\\n\",\n       \"      <th>run_24_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_24_srafile_4_size</th>\\n\",\n       \"      <th>run_24_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_24_srafile_4_supertype</th>\\n\",\n       \"      <th>run_24_srafile_4_url</th>\\n\",\n       \"      <th>run_24_srafile_4_version</th>\\n\",\n       \"      <th>run_24_static_data_available</th>\\n\",\n       \"      <th>run_24_total_base_count</th>\\n\",\n       \"      <th>run_24_total_base_cs_native</th>\\n\",\n       \"      <th>run_24_total_bases</th>\\n\",\n       \"      <th>run_24_total_spots</th>\\n\",\n       \"      <th>run_25_accession</th>\\n\",\n       \"      <th>run_25_alias</th>\\n\",\n       \"      <th>run_25_base_A_count</th>\\n\",\n       \"      <th>run_25_base_C_count</th>\\n\",\n       \"      <th>run_25_base_G_count</th>\\n\",\n       \"      <th>run_25_base_N_count</th>\\n\",\n       \"      <th>run_25_base_T_count</th>\\n\",\n       \"      <th>run_25_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_25_cloudfile_1_location</th>\\n\",\n       \"      <th>run_25_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_25_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_25_cloudfile_2_location</th>\\n\",\n       \"      <th>run_25_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_25_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_25_cloudfile_3_location</th>\\n\",\n       \"      <th>run_25_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_25_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_25_cloudfile_4_location</th>\\n\",\n       \"      <th>run_25_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_25_cluster_name</th>\\n\",\n       \"      <th>run_25_database_1</th>\\n\",\n       \"      <th>run_25_has_taxanalysis</th>\\n\",\n       \"      <th>run_25_is_public</th>\\n\",\n       \"      <th>run_25_load_done</th>\\n\",\n       \"      <th>run_25_published</th>\\n\",\n       \"      <th>run_25_size</th>\\n\",\n       \"      <th>run_25_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_25_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_25_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_25_srafile_1_cluster</th>\\n\",\n       \"      <th>run_25_srafile_1_date</th>\\n\",\n       \"      <th>run_25_srafile_1_filename</th>\\n\",\n       \"      <th>run_25_srafile_1_md5</th>\\n\",\n       \"      <th>run_25_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_25_srafile_1_size</th>\\n\",\n       \"      <th>run_25_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_25_srafile_1_supertype</th>\\n\",\n       \"      <th>run_25_srafile_1_version</th>\\n\",\n       \"      <th>run_25_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_25_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_25_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_25_srafile_2_cluster</th>\\n\",\n       \"      <th>run_25_srafile_2_date</th>\\n\",\n       \"      <th>run_25_srafile_2_filename</th>\\n\",\n       \"      <th>run_25_srafile_2_md5</th>\\n\",\n       \"      <th>run_25_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_25_srafile_2_size</th>\\n\",\n       \"      <th>run_25_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_25_srafile_2_supertype</th>\\n\",\n       \"      <th>run_25_srafile_2_url</th>\\n\",\n       \"      <th>run_25_srafile_2_version</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_25_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_25_srafile_3_cluster</th>\\n\",\n       \"      <th>run_25_srafile_3_date</th>\\n\",\n       \"      <th>run_25_srafile_3_filename</th>\\n\",\n       \"      <th>run_25_srafile_3_md5</th>\\n\",\n       \"      <th>run_25_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_25_srafile_3_size</th>\\n\",\n       \"      <th>run_25_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_25_srafile_3_supertype</th>\\n\",\n       \"      <th>run_25_srafile_3_url</th>\\n\",\n       \"      <th>run_25_srafile_3_version</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_25_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_25_srafile_4_cluster</th>\\n\",\n       \"      <th>run_25_srafile_4_date</th>\\n\",\n       \"      <th>run_25_srafile_4_filename</th>\\n\",\n       \"      <th>run_25_srafile_4_md5</th>\\n\",\n       \"      <th>run_25_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_25_srafile_4_size</th>\\n\",\n       \"      <th>run_25_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_25_srafile_4_supertype</th>\\n\",\n       \"      <th>run_25_srafile_4_url</th>\\n\",\n       \"      <th>run_25_srafile_4_version</th>\\n\",\n       \"      <th>run_25_static_data_available</th>\\n\",\n       \"      <th>run_25_total_base_count</th>\\n\",\n       \"      <th>run_25_total_base_cs_native</th>\\n\",\n       \"      <th>run_25_total_bases</th>\\n\",\n       \"      <th>run_25_total_spots</th>\\n\",\n       \"      <th>run_26_accession</th>\\n\",\n       \"      <th>run_26_alias</th>\\n\",\n       \"      <th>run_26_base_A_count</th>\\n\",\n       \"      <th>run_26_base_C_count</th>\\n\",\n       \"      <th>run_26_base_G_count</th>\\n\",\n       \"      <th>run_26_base_N_count</th>\\n\",\n       \"      <th>run_26_base_T_count</th>\\n\",\n       \"      <th>run_26_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_26_cloudfile_1_location</th>\\n\",\n       \"      <th>run_26_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_26_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_26_cloudfile_2_location</th>\\n\",\n       \"      <th>run_26_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_26_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_26_cloudfile_3_location</th>\\n\",\n       \"      <th>run_26_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_26_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_26_cloudfile_4_location</th>\\n\",\n       \"      <th>run_26_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_26_cluster_name</th>\\n\",\n       \"      <th>run_26_database_1</th>\\n\",\n       \"      <th>run_26_has_taxanalysis</th>\\n\",\n       \"      <th>run_26_is_public</th>\\n\",\n       \"      <th>run_26_load_done</th>\\n\",\n       \"      <th>run_26_published</th>\\n\",\n       \"      <th>run_26_size</th>\\n\",\n       \"      <th>run_26_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_26_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_26_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_26_srafile_1_cluster</th>\\n\",\n       \"      <th>run_26_srafile_1_date</th>\\n\",\n       \"      <th>run_26_srafile_1_filename</th>\\n\",\n       \"      <th>run_26_srafile_1_md5</th>\\n\",\n       \"      <th>run_26_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_26_srafile_1_size</th>\\n\",\n       \"      <th>run_26_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_26_srafile_1_supertype</th>\\n\",\n       \"      <th>run_26_srafile_1_version</th>\\n\",\n       \"      <th>run_26_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_26_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_26_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_26_srafile_2_cluster</th>\\n\",\n       \"      <th>run_26_srafile_2_date</th>\\n\",\n       \"      <th>run_26_srafile_2_filename</th>\\n\",\n       \"      <th>run_26_srafile_2_md5</th>\\n\",\n       \"      <th>run_26_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_26_srafile_2_size</th>\\n\",\n       \"      <th>run_26_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_26_srafile_2_supertype</th>\\n\",\n       \"      <th>run_26_srafile_2_url</th>\\n\",\n       \"      <th>run_26_srafile_2_version</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_26_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_26_srafile_3_cluster</th>\\n\",\n       \"      <th>run_26_srafile_3_date</th>\\n\",\n       \"      <th>run_26_srafile_3_filename</th>\\n\",\n       \"      <th>run_26_srafile_3_md5</th>\\n\",\n       \"      <th>run_26_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_26_srafile_3_size</th>\\n\",\n       \"      <th>run_26_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_26_srafile_3_supertype</th>\\n\",\n       \"      <th>run_26_srafile_3_url</th>\\n\",\n       \"      <th>run_26_srafile_3_version</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_26_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_26_srafile_4_cluster</th>\\n\",\n       \"      <th>run_26_srafile_4_date</th>\\n\",\n       \"      <th>run_26_srafile_4_filename</th>\\n\",\n       \"      <th>run_26_srafile_4_md5</th>\\n\",\n       \"      <th>run_26_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_26_srafile_4_size</th>\\n\",\n       \"      <th>run_26_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_26_srafile_4_supertype</th>\\n\",\n       \"      <th>run_26_srafile_4_url</th>\\n\",\n       \"      <th>run_26_srafile_4_version</th>\\n\",\n       \"      <th>run_26_static_data_available</th>\\n\",\n       \"      <th>run_26_total_base_count</th>\\n\",\n       \"      <th>run_26_total_base_cs_native</th>\\n\",\n       \"      <th>run_26_total_bases</th>\\n\",\n       \"      <th>run_26_total_spots</th>\\n\",\n       \"      <th>run_27_accession</th>\\n\",\n       \"      <th>run_27_alias</th>\\n\",\n       \"      <th>run_27_base_A_count</th>\\n\",\n       \"      <th>run_27_base_C_count</th>\\n\",\n       \"      <th>run_27_base_G_count</th>\\n\",\n       \"      <th>run_27_base_N_count</th>\\n\",\n       \"      <th>run_27_base_T_count</th>\\n\",\n       \"      <th>run_27_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_27_cloudfile_1_location</th>\\n\",\n       \"      <th>run_27_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_27_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_27_cloudfile_2_location</th>\\n\",\n       \"      <th>run_27_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_27_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_27_cloudfile_3_location</th>\\n\",\n       \"      <th>run_27_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_27_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_27_cloudfile_4_location</th>\\n\",\n       \"      <th>run_27_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_27_cluster_name</th>\\n\",\n       \"      <th>run_27_database_1</th>\\n\",\n       \"      <th>run_27_has_taxanalysis</th>\\n\",\n       \"      <th>run_27_is_public</th>\\n\",\n       \"      <th>run_27_load_done</th>\\n\",\n       \"      <th>run_27_published</th>\\n\",\n       \"      <th>run_27_size</th>\\n\",\n       \"      <th>run_27_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_27_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_27_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_27_srafile_1_cluster</th>\\n\",\n       \"      <th>run_27_srafile_1_date</th>\\n\",\n       \"      <th>run_27_srafile_1_filename</th>\\n\",\n       \"      <th>run_27_srafile_1_md5</th>\\n\",\n       \"      <th>run_27_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_27_srafile_1_size</th>\\n\",\n       \"      <th>run_27_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_27_srafile_1_supertype</th>\\n\",\n       \"      <th>run_27_srafile_1_version</th>\\n\",\n       \"      <th>run_27_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_27_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_27_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_27_srafile_2_cluster</th>\\n\",\n       \"      <th>run_27_srafile_2_date</th>\\n\",\n       \"      <th>run_27_srafile_2_filename</th>\\n\",\n       \"      <th>run_27_srafile_2_md5</th>\\n\",\n       \"      <th>run_27_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_27_srafile_2_size</th>\\n\",\n       \"      <th>run_27_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_27_srafile_2_supertype</th>\\n\",\n       \"      <th>run_27_srafile_2_url</th>\\n\",\n       \"      <th>run_27_srafile_2_version</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_27_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_27_srafile_3_cluster</th>\\n\",\n       \"      <th>run_27_srafile_3_date</th>\\n\",\n       \"      <th>run_27_srafile_3_filename</th>\\n\",\n       \"      <th>run_27_srafile_3_md5</th>\\n\",\n       \"      <th>run_27_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_27_srafile_3_size</th>\\n\",\n       \"      <th>run_27_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_27_srafile_3_supertype</th>\\n\",\n       \"      <th>run_27_srafile_3_url</th>\\n\",\n       \"      <th>run_27_srafile_3_version</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_27_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_27_srafile_4_cluster</th>\\n\",\n       \"      <th>run_27_srafile_4_date</th>\\n\",\n       \"      <th>run_27_srafile_4_filename</th>\\n\",\n       \"      <th>run_27_srafile_4_md5</th>\\n\",\n       \"      <th>run_27_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_27_srafile_4_size</th>\\n\",\n       \"      <th>run_27_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_27_srafile_4_supertype</th>\\n\",\n       \"      <th>run_27_srafile_4_url</th>\\n\",\n       \"      <th>run_27_srafile_4_version</th>\\n\",\n       \"      <th>run_27_static_data_available</th>\\n\",\n       \"      <th>run_27_total_base_count</th>\\n\",\n       \"      <th>run_27_total_base_cs_native</th>\\n\",\n       \"      <th>run_27_total_bases</th>\\n\",\n       \"      <th>run_27_total_spots</th>\\n\",\n       \"      <th>run_28_accession</th>\\n\",\n       \"      <th>run_28_alias</th>\\n\",\n       \"      <th>run_28_base_A_count</th>\\n\",\n       \"      <th>run_28_base_C_count</th>\\n\",\n       \"      <th>run_28_base_G_count</th>\\n\",\n       \"      <th>run_28_base_N_count</th>\\n\",\n       \"      <th>run_28_base_T_count</th>\\n\",\n       \"      <th>run_28_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_28_cloudfile_1_location</th>\\n\",\n       \"      <th>run_28_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_28_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_28_cloudfile_2_location</th>\\n\",\n       \"      <th>run_28_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_28_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_28_cloudfile_3_location</th>\\n\",\n       \"      <th>run_28_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_28_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_28_cloudfile_4_location</th>\\n\",\n       \"      <th>run_28_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_28_cluster_name</th>\\n\",\n       \"      <th>run_28_database_1</th>\\n\",\n       \"      <th>run_28_has_taxanalysis</th>\\n\",\n       \"      <th>run_28_is_public</th>\\n\",\n       \"      <th>run_28_load_done</th>\\n\",\n       \"      <th>run_28_published</th>\\n\",\n       \"      <th>run_28_size</th>\\n\",\n       \"      <th>run_28_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_28_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_28_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_28_srafile_1_cluster</th>\\n\",\n       \"      <th>run_28_srafile_1_date</th>\\n\",\n       \"      <th>run_28_srafile_1_filename</th>\\n\",\n       \"      <th>run_28_srafile_1_md5</th>\\n\",\n       \"      <th>run_28_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_28_srafile_1_size</th>\\n\",\n       \"      <th>run_28_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_28_srafile_1_supertype</th>\\n\",\n       \"      <th>run_28_srafile_1_version</th>\\n\",\n       \"      <th>run_28_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_28_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_28_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_28_srafile_2_cluster</th>\\n\",\n       \"      <th>run_28_srafile_2_date</th>\\n\",\n       \"      <th>run_28_srafile_2_filename</th>\\n\",\n       \"      <th>run_28_srafile_2_md5</th>\\n\",\n       \"      <th>run_28_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_28_srafile_2_size</th>\\n\",\n       \"      <th>run_28_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_28_srafile_2_supertype</th>\\n\",\n       \"      <th>run_28_srafile_2_url</th>\\n\",\n       \"      <th>run_28_srafile_2_version</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_28_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_28_srafile_3_cluster</th>\\n\",\n       \"      <th>run_28_srafile_3_date</th>\\n\",\n       \"      <th>run_28_srafile_3_filename</th>\\n\",\n       \"      <th>run_28_srafile_3_md5</th>\\n\",\n       \"      <th>run_28_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_28_srafile_3_size</th>\\n\",\n       \"      <th>run_28_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_28_srafile_3_supertype</th>\\n\",\n       \"      <th>run_28_srafile_3_url</th>\\n\",\n       \"      <th>run_28_srafile_3_version</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_28_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_28_srafile_4_cluster</th>\\n\",\n       \"      <th>run_28_srafile_4_date</th>\\n\",\n       \"      <th>run_28_srafile_4_filename</th>\\n\",\n       \"      <th>run_28_srafile_4_md5</th>\\n\",\n       \"      <th>run_28_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_28_srafile_4_size</th>\\n\",\n       \"      <th>run_28_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_28_srafile_4_supertype</th>\\n\",\n       \"      <th>run_28_srafile_4_url</th>\\n\",\n       \"      <th>run_28_srafile_4_version</th>\\n\",\n       \"      <th>run_28_static_data_available</th>\\n\",\n       \"      <th>run_28_total_base_count</th>\\n\",\n       \"      <th>run_28_total_base_cs_native</th>\\n\",\n       \"      <th>run_28_total_bases</th>\\n\",\n       \"      <th>run_28_total_spots</th>\\n\",\n       \"      <th>run_29_accession</th>\\n\",\n       \"      <th>run_29_alias</th>\\n\",\n       \"      <th>run_29_base_A_count</th>\\n\",\n       \"      <th>run_29_base_C_count</th>\\n\",\n       \"      <th>run_29_base_G_count</th>\\n\",\n       \"      <th>run_29_base_N_count</th>\\n\",\n       \"      <th>run_29_base_T_count</th>\\n\",\n       \"      <th>run_29_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_29_cloudfile_1_location</th>\\n\",\n       \"      <th>run_29_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_29_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_29_cloudfile_2_location</th>\\n\",\n       \"      <th>run_29_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_29_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_29_cloudfile_3_location</th>\\n\",\n       \"      <th>run_29_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_29_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_29_cloudfile_4_location</th>\\n\",\n       \"      <th>run_29_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_29_cluster_name</th>\\n\",\n       \"      <th>run_29_database_1</th>\\n\",\n       \"      <th>run_29_has_taxanalysis</th>\\n\",\n       \"      <th>run_29_is_public</th>\\n\",\n       \"      <th>run_29_load_done</th>\\n\",\n       \"      <th>run_29_published</th>\\n\",\n       \"      <th>run_29_size</th>\\n\",\n       \"      <th>run_29_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_29_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_29_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_29_srafile_1_cluster</th>\\n\",\n       \"      <th>run_29_srafile_1_date</th>\\n\",\n       \"      <th>run_29_srafile_1_filename</th>\\n\",\n       \"      <th>run_29_srafile_1_md5</th>\\n\",\n       \"      <th>run_29_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_29_srafile_1_size</th>\\n\",\n       \"      <th>run_29_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_29_srafile_1_supertype</th>\\n\",\n       \"      <th>run_29_srafile_1_version</th>\\n\",\n       \"      <th>run_29_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_29_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_29_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_29_srafile_2_cluster</th>\\n\",\n       \"      <th>run_29_srafile_2_date</th>\\n\",\n       \"      <th>run_29_srafile_2_filename</th>\\n\",\n       \"      <th>run_29_srafile_2_md5</th>\\n\",\n       \"      <th>run_29_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_29_srafile_2_size</th>\\n\",\n       \"      <th>run_29_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_29_srafile_2_supertype</th>\\n\",\n       \"      <th>run_29_srafile_2_url</th>\\n\",\n       \"      <th>run_29_srafile_2_version</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_29_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_29_srafile_3_cluster</th>\\n\",\n       \"      <th>run_29_srafile_3_date</th>\\n\",\n       \"      <th>run_29_srafile_3_filename</th>\\n\",\n       \"      <th>run_29_srafile_3_md5</th>\\n\",\n       \"      <th>run_29_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_29_srafile_3_size</th>\\n\",\n       \"      <th>run_29_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_29_srafile_3_supertype</th>\\n\",\n       \"      <th>run_29_srafile_3_url</th>\\n\",\n       \"      <th>run_29_srafile_3_version</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_29_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_29_srafile_4_cluster</th>\\n\",\n       \"      <th>run_29_srafile_4_date</th>\\n\",\n       \"      <th>run_29_srafile_4_filename</th>\\n\",\n       \"      <th>run_29_srafile_4_md5</th>\\n\",\n       \"      <th>run_29_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_29_srafile_4_size</th>\\n\",\n       \"      <th>run_29_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_29_srafile_4_supertype</th>\\n\",\n       \"      <th>run_29_srafile_4_url</th>\\n\",\n       \"      <th>run_29_srafile_4_version</th>\\n\",\n       \"      <th>run_29_static_data_available</th>\\n\",\n       \"      <th>run_29_total_base_count</th>\\n\",\n       \"      <th>run_29_total_base_cs_native</th>\\n\",\n       \"      <th>run_29_total_bases</th>\\n\",\n       \"      <th>run_29_total_spots</th>\\n\",\n       \"      <th>run_2_accession</th>\\n\",\n       \"      <th>run_2_alias</th>\\n\",\n       \"      <th>run_2_base_A_count</th>\\n\",\n       \"      <th>run_2_base_C_count</th>\\n\",\n       \"      <th>run_2_base_G_count</th>\\n\",\n       \"      <th>run_2_base_N_count</th>\\n\",\n       \"      <th>run_2_base_T_count</th>\\n\",\n       \"      <th>run_2_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_2_cloudfile_1_location</th>\\n\",\n       \"      <th>run_2_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_2_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_2_cloudfile_2_location</th>\\n\",\n       \"      <th>run_2_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_2_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_2_cloudfile_3_location</th>\\n\",\n       \"      <th>run_2_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_2_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_2_cloudfile_4_location</th>\\n\",\n       \"      <th>run_2_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_2_cluster_name</th>\\n\",\n       \"      <th>run_2_database_1</th>\\n\",\n       \"      <th>run_2_has_taxanalysis</th>\\n\",\n       \"      <th>run_2_is_public</th>\\n\",\n       \"      <th>run_2_load_done</th>\\n\",\n       \"      <th>run_2_published</th>\\n\",\n       \"      <th>run_2_size</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_2_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_2_srafile_1_cluster</th>\\n\",\n       \"      <th>run_2_srafile_1_date</th>\\n\",\n       \"      <th>run_2_srafile_1_filename</th>\\n\",\n       \"      <th>run_2_srafile_1_md5</th>\\n\",\n       \"      <th>run_2_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_1_size</th>\\n\",\n       \"      <th>run_2_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_1_supertype</th>\\n\",\n       \"      <th>run_2_srafile_1_url</th>\\n\",\n       \"      <th>run_2_srafile_1_version</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_2_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_2_cluster</th>\\n\",\n       \"      <th>run_2_srafile_2_date</th>\\n\",\n       \"      <th>run_2_srafile_2_filename</th>\\n\",\n       \"      <th>run_2_srafile_2_md5</th>\\n\",\n       \"      <th>run_2_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_2_size</th>\\n\",\n       \"      <th>run_2_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_2_supertype</th>\\n\",\n       \"      <th>run_2_srafile_2_url</th>\\n\",\n       \"      <th>run_2_srafile_2_version</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_2_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_2_srafile_3_cluster</th>\\n\",\n       \"      <th>run_2_srafile_3_date</th>\\n\",\n       \"      <th>run_2_srafile_3_filename</th>\\n\",\n       \"      <th>run_2_srafile_3_md5</th>\\n\",\n       \"      <th>run_2_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_3_size</th>\\n\",\n       \"      <th>run_2_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_3_supertype</th>\\n\",\n       \"      <th>run_2_srafile_3_url</th>\\n\",\n       \"      <th>run_2_srafile_3_version</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_2_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_2_srafile_4_cluster</th>\\n\",\n       \"      <th>run_2_srafile_4_date</th>\\n\",\n       \"      <th>run_2_srafile_4_filename</th>\\n\",\n       \"      <th>run_2_srafile_4_md5</th>\\n\",\n       \"      <th>run_2_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_4_size</th>\\n\",\n       \"      <th>run_2_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_4_supertype</th>\\n\",\n       \"      <th>run_2_srafile_4_url</th>\\n\",\n       \"      <th>run_2_srafile_4_version</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_3_access_type</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_3_org</th>\\n\",\n       \"      <th>run_2_srafile_5_alternative_3_url</th>\\n\",\n       \"      <th>run_2_srafile_5_cluster</th>\\n\",\n       \"      <th>run_2_srafile_5_date</th>\\n\",\n       \"      <th>run_2_srafile_5_filename</th>\\n\",\n       \"      <th>run_2_srafile_5_md5</th>\\n\",\n       \"      <th>run_2_srafile_5_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_5_size</th>\\n\",\n       \"      <th>run_2_srafile_5_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_5_supertype</th>\\n\",\n       \"      <th>run_2_srafile_5_url</th>\\n\",\n       \"      <th>run_2_srafile_5_version</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_1_access_type</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_1_org</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_1_url</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_2_access_type</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_2_org</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_2_url</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_3_access_type</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_3_org</th>\\n\",\n       \"      <th>run_2_srafile_6_alternative_3_url</th>\\n\",\n       \"      <th>run_2_srafile_6_cluster</th>\\n\",\n       \"      <th>run_2_srafile_6_date</th>\\n\",\n       \"      <th>run_2_srafile_6_filename</th>\\n\",\n       \"      <th>run_2_srafile_6_md5</th>\\n\",\n       \"      <th>run_2_srafile_6_semantic_name</th>\\n\",\n       \"      <th>run_2_srafile_6_size</th>\\n\",\n       \"      <th>run_2_srafile_6_sratoolkit</th>\\n\",\n       \"      <th>run_2_srafile_6_supertype</th>\\n\",\n       \"      <th>run_2_srafile_6_url</th>\\n\",\n       \"      <th>run_2_srafile_6_version</th>\\n\",\n       \"      <th>run_2_static_data_available</th>\\n\",\n       \"      <th>run_2_total_base_count</th>\\n\",\n       \"      <th>run_2_total_base_cs_native</th>\\n\",\n       \"      <th>run_2_total_bases</th>\\n\",\n       \"      <th>run_2_total_spots</th>\\n\",\n       \"      <th>run_30_accession</th>\\n\",\n       \"      <th>run_30_alias</th>\\n\",\n       \"      <th>run_30_base_A_count</th>\\n\",\n       \"      <th>run_30_base_C_count</th>\\n\",\n       \"      <th>run_30_base_G_count</th>\\n\",\n       \"      <th>run_30_base_N_count</th>\\n\",\n       \"      <th>run_30_base_T_count</th>\\n\",\n       \"      <th>run_30_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_30_cloudfile_1_location</th>\\n\",\n       \"      <th>run_30_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_30_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_30_cloudfile_2_location</th>\\n\",\n       \"      <th>run_30_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_30_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_30_cloudfile_3_location</th>\\n\",\n       \"      <th>run_30_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_30_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_30_cloudfile_4_location</th>\\n\",\n       \"      <th>run_30_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_30_cluster_name</th>\\n\",\n       \"      <th>run_30_database_1</th>\\n\",\n       \"      <th>run_30_has_taxanalysis</th>\\n\",\n       \"      <th>run_30_is_public</th>\\n\",\n       \"      <th>run_30_load_done</th>\\n\",\n       \"      <th>run_30_published</th>\\n\",\n       \"      <th>run_30_size</th>\\n\",\n       \"      <th>run_30_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_30_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_30_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_30_srafile_1_cluster</th>\\n\",\n       \"      <th>run_30_srafile_1_date</th>\\n\",\n       \"      <th>run_30_srafile_1_filename</th>\\n\",\n       \"      <th>run_30_srafile_1_md5</th>\\n\",\n       \"      <th>run_30_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_30_srafile_1_size</th>\\n\",\n       \"      <th>run_30_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_30_srafile_1_supertype</th>\\n\",\n       \"      <th>run_30_srafile_1_version</th>\\n\",\n       \"      <th>run_30_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_30_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_30_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_30_srafile_2_cluster</th>\\n\",\n       \"      <th>run_30_srafile_2_date</th>\\n\",\n       \"      <th>run_30_srafile_2_filename</th>\\n\",\n       \"      <th>run_30_srafile_2_md5</th>\\n\",\n       \"      <th>run_30_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_30_srafile_2_size</th>\\n\",\n       \"      <th>run_30_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_30_srafile_2_supertype</th>\\n\",\n       \"      <th>run_30_srafile_2_url</th>\\n\",\n       \"      <th>run_30_srafile_2_version</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_30_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_30_srafile_3_cluster</th>\\n\",\n       \"      <th>run_30_srafile_3_date</th>\\n\",\n       \"      <th>run_30_srafile_3_filename</th>\\n\",\n       \"      <th>run_30_srafile_3_md5</th>\\n\",\n       \"      <th>run_30_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_30_srafile_3_size</th>\\n\",\n       \"      <th>run_30_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_30_srafile_3_supertype</th>\\n\",\n       \"      <th>run_30_srafile_3_url</th>\\n\",\n       \"      <th>run_30_srafile_3_version</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_30_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_30_srafile_4_cluster</th>\\n\",\n       \"      <th>run_30_srafile_4_date</th>\\n\",\n       \"      <th>run_30_srafile_4_filename</th>\\n\",\n       \"      <th>run_30_srafile_4_md5</th>\\n\",\n       \"      <th>run_30_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_30_srafile_4_size</th>\\n\",\n       \"      <th>run_30_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_30_srafile_4_supertype</th>\\n\",\n       \"      <th>run_30_srafile_4_url</th>\\n\",\n       \"      <th>run_30_srafile_4_version</th>\\n\",\n       \"      <th>run_30_static_data_available</th>\\n\",\n       \"      <th>run_30_total_base_count</th>\\n\",\n       \"      <th>run_30_total_base_cs_native</th>\\n\",\n       \"      <th>run_30_total_bases</th>\\n\",\n       \"      <th>run_30_total_spots</th>\\n\",\n       \"      <th>run_31_accession</th>\\n\",\n       \"      <th>run_31_alias</th>\\n\",\n       \"      <th>run_31_base_A_count</th>\\n\",\n       \"      <th>run_31_base_C_count</th>\\n\",\n       \"      <th>run_31_base_G_count</th>\\n\",\n       \"      <th>run_31_base_N_count</th>\\n\",\n       \"      <th>run_31_base_T_count</th>\\n\",\n       \"      <th>run_31_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_31_cloudfile_1_location</th>\\n\",\n       \"      <th>run_31_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_31_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_31_cloudfile_2_location</th>\\n\",\n       \"      <th>run_31_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_31_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_31_cloudfile_3_location</th>\\n\",\n       \"      <th>run_31_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_31_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_31_cloudfile_4_location</th>\\n\",\n       \"      <th>run_31_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_31_cluster_name</th>\\n\",\n       \"      <th>run_31_database_1</th>\\n\",\n       \"      <th>run_31_has_taxanalysis</th>\\n\",\n       \"      <th>run_31_is_public</th>\\n\",\n       \"      <th>run_31_load_done</th>\\n\",\n       \"      <th>run_31_published</th>\\n\",\n       \"      <th>run_31_size</th>\\n\",\n       \"      <th>run_31_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_31_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_31_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_31_srafile_1_cluster</th>\\n\",\n       \"      <th>run_31_srafile_1_date</th>\\n\",\n       \"      <th>run_31_srafile_1_filename</th>\\n\",\n       \"      <th>run_31_srafile_1_md5</th>\\n\",\n       \"      <th>run_31_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_31_srafile_1_size</th>\\n\",\n       \"      <th>run_31_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_31_srafile_1_supertype</th>\\n\",\n       \"      <th>run_31_srafile_1_version</th>\\n\",\n       \"      <th>run_31_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_31_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_31_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_31_srafile_2_cluster</th>\\n\",\n       \"      <th>run_31_srafile_2_date</th>\\n\",\n       \"      <th>run_31_srafile_2_filename</th>\\n\",\n       \"      <th>run_31_srafile_2_md5</th>\\n\",\n       \"      <th>run_31_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_31_srafile_2_size</th>\\n\",\n       \"      <th>run_31_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_31_srafile_2_supertype</th>\\n\",\n       \"      <th>run_31_srafile_2_url</th>\\n\",\n       \"      <th>run_31_srafile_2_version</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_31_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_31_srafile_3_cluster</th>\\n\",\n       \"      <th>run_31_srafile_3_date</th>\\n\",\n       \"      <th>run_31_srafile_3_filename</th>\\n\",\n       \"      <th>run_31_srafile_3_md5</th>\\n\",\n       \"      <th>run_31_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_31_srafile_3_size</th>\\n\",\n       \"      <th>run_31_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_31_srafile_3_supertype</th>\\n\",\n       \"      <th>run_31_srafile_3_url</th>\\n\",\n       \"      <th>run_31_srafile_3_version</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_31_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_31_srafile_4_cluster</th>\\n\",\n       \"      <th>run_31_srafile_4_date</th>\\n\",\n       \"      <th>run_31_srafile_4_filename</th>\\n\",\n       \"      <th>run_31_srafile_4_md5</th>\\n\",\n       \"      <th>run_31_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_31_srafile_4_size</th>\\n\",\n       \"      <th>run_31_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_31_srafile_4_supertype</th>\\n\",\n       \"      <th>run_31_srafile_4_url</th>\\n\",\n       \"      <th>run_31_srafile_4_version</th>\\n\",\n       \"      <th>run_31_static_data_available</th>\\n\",\n       \"      <th>run_31_total_base_count</th>\\n\",\n       \"      <th>run_31_total_base_cs_native</th>\\n\",\n       \"      <th>run_31_total_bases</th>\\n\",\n       \"      <th>run_31_total_spots</th>\\n\",\n       \"      <th>run_32_accession</th>\\n\",\n       \"      <th>run_32_alias</th>\\n\",\n       \"      <th>run_32_base_A_count</th>\\n\",\n       \"      <th>run_32_base_C_count</th>\\n\",\n       \"      <th>run_32_base_G_count</th>\\n\",\n       \"      <th>run_32_base_N_count</th>\\n\",\n       \"      <th>run_32_base_T_count</th>\\n\",\n       \"      <th>run_32_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_32_cloudfile_1_location</th>\\n\",\n       \"      <th>run_32_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_32_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_32_cloudfile_2_location</th>\\n\",\n       \"      <th>run_32_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_32_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_32_cloudfile_3_location</th>\\n\",\n       \"      <th>run_32_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_32_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_32_cloudfile_4_location</th>\\n\",\n       \"      <th>run_32_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_32_cluster_name</th>\\n\",\n       \"      <th>run_32_database_1</th>\\n\",\n       \"      <th>run_32_has_taxanalysis</th>\\n\",\n       \"      <th>run_32_is_public</th>\\n\",\n       \"      <th>run_32_load_done</th>\\n\",\n       \"      <th>run_32_published</th>\\n\",\n       \"      <th>run_32_size</th>\\n\",\n       \"      <th>run_32_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_32_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_32_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_32_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_32_srafile_1_cluster</th>\\n\",\n       \"      <th>run_32_srafile_1_date</th>\\n\",\n       \"      <th>run_32_srafile_1_filename</th>\\n\",\n       \"      <th>run_32_srafile_1_md5</th>\\n\",\n       \"      <th>run_32_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_32_srafile_1_size</th>\\n\",\n       \"      <th>run_32_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_32_srafile_1_supertype</th>\\n\",\n       \"      <th>run_32_srafile_1_version</th>\\n\",\n       \"      <th>run_32_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_32_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_32_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_32_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_32_srafile_2_cluster</th>\\n\",\n       \"      <th>run_32_srafile_2_date</th>\\n\",\n       \"      <th>run_32_srafile_2_filename</th>\\n\",\n       \"      <th>run_32_srafile_2_md5</th>\\n\",\n       \"      <th>run_32_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_32_srafile_2_size</th>\\n\",\n       \"      <th>run_32_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_32_srafile_2_supertype</th>\\n\",\n       \"      <th>run_32_srafile_2_url</th>\\n\",\n       \"      <th>run_32_srafile_2_version</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_32_srafile_3_alternative_2_url</th>\\n\",\n       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 \"      <th>run_35_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_35_srafile_2_supertype</th>\\n\",\n       \"      <th>run_35_srafile_2_url</th>\\n\",\n       \"      <th>run_35_srafile_2_version</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_35_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_35_srafile_3_cluster</th>\\n\",\n       \"      <th>run_35_srafile_3_date</th>\\n\",\n       \"      <th>run_35_srafile_3_filename</th>\\n\",\n       \"      <th>run_35_srafile_3_md5</th>\\n\",\n       \"      <th>run_35_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_35_srafile_3_size</th>\\n\",\n       \"      <th>run_35_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_35_srafile_3_supertype</th>\\n\",\n       \"      <th>run_35_srafile_3_url</th>\\n\",\n       \"      <th>run_35_srafile_3_version</th>\\n\",\n       \"      <th>run_35_static_data_available</th>\\n\",\n       \"      <th>run_35_total_base_count</th>\\n\",\n       \"      <th>run_35_total_base_cs_native</th>\\n\",\n       \"      <th>run_35_total_bases</th>\\n\",\n       \"      <th>run_35_total_spots</th>\\n\",\n       \"      <th>run_36_accession</th>\\n\",\n       \"      <th>run_36_alias</th>\\n\",\n       \"      <th>run_36_base_A_count</th>\\n\",\n       \"      <th>run_36_base_C_count</th>\\n\",\n       \"      <th>run_36_base_G_count</th>\\n\",\n       \"      <th>run_36_base_N_count</th>\\n\",\n       \"      <th>run_36_base_T_count</th>\\n\",\n       \"      <th>run_36_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_36_cloudfile_1_location</th>\\n\",\n       \"      <th>run_36_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_36_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_36_cloudfile_2_location</th>\\n\",\n       \"      <th>run_36_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_36_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_36_cloudfile_3_location</th>\\n\",\n       \"      <th>run_36_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_36_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_36_cloudfile_4_location</th>\\n\",\n       \"      <th>run_36_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_36_cluster_name</th>\\n\",\n       \"      <th>run_36_database_1</th>\\n\",\n       \"      <th>run_36_has_taxanalysis</th>\\n\",\n       \"      <th>run_36_is_public</th>\\n\",\n       \"      <th>run_36_load_done</th>\\n\",\n       \"      <th>run_36_published</th>\\n\",\n       \"      <th>run_36_size</th>\\n\",\n       \"      <th>run_36_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_36_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_36_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_36_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_36_srafile_1_cluster</th>\\n\",\n       \"      <th>run_36_srafile_1_date</th>\\n\",\n       \"      <th>run_36_srafile_1_filename</th>\\n\",\n       \"      <th>run_36_srafile_1_md5</th>\\n\",\n       \"      <th>run_36_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_36_srafile_1_size</th>\\n\",\n       \"      <th>run_36_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_36_srafile_1_supertype</th>\\n\",\n       \"      <th>run_36_srafile_1_version</th>\\n\",\n       \"      <th>run_36_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_36_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_36_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_36_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_36_srafile_2_cluster</th>\\n\",\n       \"      <th>run_36_srafile_2_date</th>\\n\",\n       \"      <th>run_36_srafile_2_filename</th>\\n\",\n       \"      <th>run_36_srafile_2_md5</th>\\n\",\n       \"      <th>run_36_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_36_srafile_2_size</th>\\n\",\n       \"      <th>run_36_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_36_srafile_2_supertype</th>\\n\",\n       \"      <th>run_36_srafile_2_url</th>\\n\",\n       \"      <th>run_36_srafile_2_version</th>\\n\",\n       \"      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     <th>run_36_srafile_3_md5</th>\\n\",\n       \"      <th>run_36_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_36_srafile_3_size</th>\\n\",\n       \"      <th>run_36_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_36_srafile_3_supertype</th>\\n\",\n       \"      <th>run_36_srafile_3_url</th>\\n\",\n       \"      <th>run_36_srafile_3_version</th>\\n\",\n       \"      <th>run_36_static_data_available</th>\\n\",\n       \"      <th>run_36_total_base_count</th>\\n\",\n       \"      <th>run_36_total_base_cs_native</th>\\n\",\n       \"      <th>run_36_total_bases</th>\\n\",\n       \"      <th>run_36_total_spots</th>\\n\",\n       \"      <th>run_37_accession</th>\\n\",\n       \"      <th>run_37_alias</th>\\n\",\n       \"      <th>run_37_base_A_count</th>\\n\",\n       \"      <th>run_37_base_C_count</th>\\n\",\n       \"      <th>run_37_base_G_count</th>\\n\",\n       \"      <th>run_37_base_N_count</th>\\n\",\n       \"      <th>run_37_base_T_count</th>\\n\",\n       \"      <th>run_37_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_37_cloudfile_1_location</th>\\n\",\n       \"      <th>run_37_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_37_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_37_cloudfile_2_location</th>\\n\",\n       \"      <th>run_37_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_37_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_37_cloudfile_3_location</th>\\n\",\n       \"      <th>run_37_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_37_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_37_cloudfile_4_location</th>\\n\",\n       \"      <th>run_37_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_37_cluster_name</th>\\n\",\n       \"      <th>run_37_database_1</th>\\n\",\n       \"      <th>run_37_has_taxanalysis</th>\\n\",\n       \"      <th>run_37_is_public</th>\\n\",\n       \"      <th>run_37_load_done</th>\\n\",\n       \"      <th>run_37_published</th>\\n\",\n       \"      <th>run_37_size</th>\\n\",\n       \"      <th>run_37_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_37_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_37_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_37_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_37_srafile_1_cluster</th>\\n\",\n       \"      <th>run_37_srafile_1_date</th>\\n\",\n       \"      <th>run_37_srafile_1_filename</th>\\n\",\n       \"      <th>run_37_srafile_1_md5</th>\\n\",\n       \"      <th>run_37_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_37_srafile_1_size</th>\\n\",\n       \"      <th>run_37_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_37_srafile_1_supertype</th>\\n\",\n       \"      <th>run_37_srafile_1_version</th>\\n\",\n       \"      <th>run_37_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_37_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_37_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_37_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_37_srafile_2_cluster</th>\\n\",\n       \"      <th>run_37_srafile_2_date</th>\\n\",\n       \"      <th>run_37_srafile_2_filename</th>\\n\",\n       \"      <th>run_37_srafile_2_md5</th>\\n\",\n       \"      <th>run_37_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_37_srafile_2_size</th>\\n\",\n       \"      <th>run_37_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_37_srafile_2_supertype</th>\\n\",\n       \"      <th>run_37_srafile_2_url</th>\\n\",\n       \"      <th>run_37_srafile_2_version</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_37_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_37_srafile_3_cluster</th>\\n\",\n       \"      <th>run_37_srafile_3_date</th>\\n\",\n       \"      <th>run_37_srafile_3_filename</th>\\n\",\n       \"      <th>run_37_srafile_3_md5</th>\\n\",\n       \"      <th>run_37_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_37_srafile_3_size</th>\\n\",\n       \"      <th>run_37_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_37_srafile_3_supertype</th>\\n\",\n       \"      <th>run_37_srafile_3_url</th>\\n\",\n       \"      <th>run_37_srafile_3_version</th>\\n\",\n       \"      <th>run_37_static_data_available</th>\\n\",\n       \"      <th>run_37_total_base_count</th>\\n\",\n       \"      <th>run_37_total_base_cs_native</th>\\n\",\n       \"      <th>run_37_total_bases</th>\\n\",\n       \"      <th>run_37_total_spots</th>\\n\",\n       \"      <th>run_38_accession</th>\\n\",\n       \"      <th>run_38_alias</th>\\n\",\n       \"      <th>run_38_base_A_count</th>\\n\",\n       \"      <th>run_38_base_C_count</th>\\n\",\n       \"      <th>run_38_base_G_count</th>\\n\",\n       \"      <th>run_38_base_N_count</th>\\n\",\n       \"      <th>run_38_base_T_count</th>\\n\",\n       \"      <th>run_38_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_38_cloudfile_1_location</th>\\n\",\n       \"      <th>run_38_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_38_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_38_cloudfile_2_location</th>\\n\",\n       \"      <th>run_38_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_38_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_38_cloudfile_3_location</th>\\n\",\n       \"      <th>run_38_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_38_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_38_cloudfile_4_location</th>\\n\",\n       \"      <th>run_38_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_38_cluster_name</th>\\n\",\n       \"      <th>run_38_database_1</th>\\n\",\n       \"      <th>run_38_has_taxanalysis</th>\\n\",\n       \"      <th>run_38_is_public</th>\\n\",\n       \"      <th>run_38_load_done</th>\\n\",\n       \"      <th>run_38_published</th>\\n\",\n       \"      <th>run_38_size</th>\\n\",\n       \"      <th>run_38_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_38_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_38_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_38_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_38_srafile_1_cluster</th>\\n\",\n       \"      <th>run_38_srafile_1_date</th>\\n\",\n       \"      <th>run_38_srafile_1_filename</th>\\n\",\n       \"      <th>run_38_srafile_1_md5</th>\\n\",\n       \"      <th>run_38_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_38_srafile_1_size</th>\\n\",\n       \"      <th>run_38_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_38_srafile_1_supertype</th>\\n\",\n       \"      <th>run_38_srafile_1_version</th>\\n\",\n       \"      <th>run_38_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_38_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_38_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_38_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_38_srafile_2_cluster</th>\\n\",\n       \"      <th>run_38_srafile_2_date</th>\\n\",\n       \"      <th>run_38_srafile_2_filename</th>\\n\",\n       \"      <th>run_38_srafile_2_md5</th>\\n\",\n       \"      <th>run_38_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_38_srafile_2_size</th>\\n\",\n       \"      <th>run_38_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_38_srafile_2_supertype</th>\\n\",\n       \"      <th>run_38_srafile_2_url</th>\\n\",\n       \"      <th>run_38_srafile_2_version</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_38_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_38_srafile_3_cluster</th>\\n\",\n       \"      <th>run_38_srafile_3_date</th>\\n\",\n       \"      <th>run_38_srafile_3_filename</th>\\n\",\n       \"      <th>run_38_srafile_3_md5</th>\\n\",\n       \"      <th>run_38_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_38_srafile_3_size</th>\\n\",\n       \"      <th>run_38_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_38_srafile_3_supertype</th>\\n\",\n       \"      <th>run_38_srafile_3_url</th>\\n\",\n       \"      <th>run_38_srafile_3_version</th>\\n\",\n       \"      <th>run_38_static_data_available</th>\\n\",\n       \"      <th>run_38_total_base_count</th>\\n\",\n       \"      <th>run_38_total_base_cs_native</th>\\n\",\n       \"      <th>run_38_total_bases</th>\\n\",\n       \"      <th>run_38_total_spots</th>\\n\",\n       \"      <th>run_39_accession</th>\\n\",\n       \"      <th>run_39_alias</th>\\n\",\n       \"      <th>run_39_base_A_count</th>\\n\",\n       \"      <th>run_39_base_C_count</th>\\n\",\n       \"      <th>run_39_base_G_count</th>\\n\",\n       \"      <th>run_39_base_N_count</th>\\n\",\n       \"      <th>run_39_base_T_count</th>\\n\",\n       \"      <th>run_39_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_39_cloudfile_1_location</th>\\n\",\n       \"      <th>run_39_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_39_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_39_cloudfile_2_location</th>\\n\",\n       \"      <th>run_39_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_39_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_39_cloudfile_3_location</th>\\n\",\n       \"      <th>run_39_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_39_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_39_cloudfile_4_location</th>\\n\",\n       \"      <th>run_39_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_39_cluster_name</th>\\n\",\n       \"      <th>run_39_database_1</th>\\n\",\n       \"      <th>run_39_has_taxanalysis</th>\\n\",\n       \"      <th>run_39_is_public</th>\\n\",\n       \"      <th>run_39_load_done</th>\\n\",\n       \"      <th>run_39_published</th>\\n\",\n       \"      <th>run_39_size</th>\\n\",\n       \"      <th>run_39_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_39_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_39_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_39_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_39_srafile_1_cluster</th>\\n\",\n       \"      <th>run_39_srafile_1_date</th>\\n\",\n       \"      <th>run_39_srafile_1_filename</th>\\n\",\n       \"      <th>run_39_srafile_1_md5</th>\\n\",\n       \"      <th>run_39_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_39_srafile_1_size</th>\\n\",\n       \"      <th>run_39_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_39_srafile_1_supertype</th>\\n\",\n       \"      <th>run_39_srafile_1_version</th>\\n\",\n       \"      <th>run_39_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_39_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_39_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_39_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_39_srafile_2_cluster</th>\\n\",\n       \"      <th>run_39_srafile_2_date</th>\\n\",\n       \"      <th>run_39_srafile_2_filename</th>\\n\",\n       \"      <th>run_39_srafile_2_md5</th>\\n\",\n       \"      <th>run_39_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_39_srafile_2_size</th>\\n\",\n       \"      <th>run_39_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_39_srafile_2_supertype</th>\\n\",\n       \"      <th>run_39_srafile_2_url</th>\\n\",\n       \"      <th>run_39_srafile_2_version</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_39_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_39_srafile_3_cluster</th>\\n\",\n       \"      <th>run_39_srafile_3_date</th>\\n\",\n       \"      <th>run_39_srafile_3_filename</th>\\n\",\n       \"      <th>run_39_srafile_3_md5</th>\\n\",\n       \"      <th>run_39_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_39_srafile_3_size</th>\\n\",\n       \"      <th>run_39_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_39_srafile_3_supertype</th>\\n\",\n       \"      <th>run_39_srafile_3_url</th>\\n\",\n       \"      <th>run_39_srafile_3_version</th>\\n\",\n       \"      <th>run_39_static_data_available</th>\\n\",\n       \"      <th>run_39_total_base_count</th>\\n\",\n       \"      <th>run_39_total_base_cs_native</th>\\n\",\n       \"      <th>run_39_total_bases</th>\\n\",\n       \"      <th>run_39_total_spots</th>\\n\",\n       \"      <th>run_3_accession</th>\\n\",\n       \"      <th>run_3_alias</th>\\n\",\n       \"      <th>run_3_base_A_count</th>\\n\",\n       \"      <th>run_3_base_C_count</th>\\n\",\n       \"      <th>run_3_base_G_count</th>\\n\",\n       \"      <th>run_3_base_N_count</th>\\n\",\n       \"      <th>run_3_base_T_count</th>\\n\",\n       \"      <th>run_3_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_3_cloudfile_1_location</th>\\n\",\n       \"      <th>run_3_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_3_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_3_cloudfile_2_location</th>\\n\",\n       \"      <th>run_3_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_3_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_3_cloudfile_3_location</th>\\n\",\n       \"      <th>run_3_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_3_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_3_cloudfile_4_location</th>\\n\",\n       \"      <th>run_3_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_3_cluster_name</th>\\n\",\n       \"      <th>run_3_database_1</th>\\n\",\n       \"      <th>run_3_has_taxanalysis</th>\\n\",\n       \"      <th>run_3_is_public</th>\\n\",\n       \"      <th>run_3_load_done</th>\\n\",\n       \"      <th>run_3_published</th>\\n\",\n       \"      <th>run_3_size</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_1_cluster</th>\\n\",\n       \"      <th>run_3_srafile_1_date</th>\\n\",\n       \"      <th>run_3_srafile_1_filename</th>\\n\",\n       \"      <th>run_3_srafile_1_md5</th>\\n\",\n       \"      <th>run_3_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_1_size</th>\\n\",\n       \"      <th>run_3_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_1_supertype</th>\\n\",\n       \"      <th>run_3_srafile_1_url</th>\\n\",\n       \"      <th>run_3_srafile_1_version</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_2_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_2_cluster</th>\\n\",\n       \"      <th>run_3_srafile_2_date</th>\\n\",\n       \"      <th>run_3_srafile_2_filename</th>\\n\",\n       \"      <th>run_3_srafile_2_md5</th>\\n\",\n       \"      <th>run_3_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_2_size</th>\\n\",\n       \"      <th>run_3_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_2_supertype</th>\\n\",\n       \"      <th>run_3_srafile_2_url</th>\\n\",\n       \"      <th>run_3_srafile_2_version</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_3_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_3_srafile_3_cluster</th>\\n\",\n       \"      <th>run_3_srafile_3_date</th>\\n\",\n       \"      <th>run_3_srafile_3_filename</th>\\n\",\n       \"      <th>run_3_srafile_3_md5</th>\\n\",\n       \"      <th>run_3_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_3_size</th>\\n\",\n       \"      <th>run_3_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_3_supertype</th>\\n\",\n       \"      <th>run_3_srafile_3_url</th>\\n\",\n       \"      <th>run_3_srafile_3_version</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_3_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_3_srafile_4_cluster</th>\\n\",\n       \"      <th>run_3_srafile_4_date</th>\\n\",\n       \"      <th>run_3_srafile_4_filename</th>\\n\",\n       \"      <th>run_3_srafile_4_md5</th>\\n\",\n       \"      <th>run_3_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_4_size</th>\\n\",\n       \"      <th>run_3_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_4_supertype</th>\\n\",\n       \"      <th>run_3_srafile_4_url</th>\\n\",\n       \"      <th>run_3_srafile_4_version</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_3_access_type</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_3_org</th>\\n\",\n       \"      <th>run_3_srafile_5_alternative_3_url</th>\\n\",\n       \"      <th>run_3_srafile_5_cluster</th>\\n\",\n       \"      <th>run_3_srafile_5_date</th>\\n\",\n       \"      <th>run_3_srafile_5_filename</th>\\n\",\n       \"      <th>run_3_srafile_5_md5</th>\\n\",\n       \"      <th>run_3_srafile_5_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_5_size</th>\\n\",\n       \"      <th>run_3_srafile_5_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_5_supertype</th>\\n\",\n       \"      <th>run_3_srafile_5_url</th>\\n\",\n       \"      <th>run_3_srafile_5_version</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_1_access_type</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_1_org</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_1_url</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_2_access_type</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_2_org</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_2_url</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_3_access_type</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_3_org</th>\\n\",\n       \"      <th>run_3_srafile_6_alternative_3_url</th>\\n\",\n       \"      <th>run_3_srafile_6_cluster</th>\\n\",\n       \"      <th>run_3_srafile_6_date</th>\\n\",\n       \"      <th>run_3_srafile_6_filename</th>\\n\",\n       \"      <th>run_3_srafile_6_md5</th>\\n\",\n       \"      <th>run_3_srafile_6_semantic_name</th>\\n\",\n       \"      <th>run_3_srafile_6_size</th>\\n\",\n       \"      <th>run_3_srafile_6_sratoolkit</th>\\n\",\n       \"      <th>run_3_srafile_6_supertype</th>\\n\",\n       \"      <th>run_3_srafile_6_url</th>\\n\",\n       \"      <th>run_3_srafile_6_version</th>\\n\",\n       \"      <th>run_3_static_data_available</th>\\n\",\n       \"      <th>run_3_total_base_count</th>\\n\",\n       \"      <th>run_3_total_base_cs_native</th>\\n\",\n       \"      <th>run_3_total_bases</th>\\n\",\n       \"      <th>run_3_total_spots</th>\\n\",\n       \"      <th>run_40_accession</th>\\n\",\n       \"      <th>run_40_alias</th>\\n\",\n       \"      <th>run_40_base_A_count</th>\\n\",\n       \"      <th>run_40_base_C_count</th>\\n\",\n       \"      <th>run_40_base_G_count</th>\\n\",\n       \"      <th>run_40_base_N_count</th>\\n\",\n       \"      <th>run_40_base_T_count</th>\\n\",\n       \"      <th>run_40_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_40_cloudfile_1_location</th>\\n\",\n       \"      <th>run_40_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_40_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_40_cloudfile_2_location</th>\\n\",\n       \"      <th>run_40_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_40_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_40_cloudfile_3_location</th>\\n\",\n       \"      <th>run_40_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_40_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_40_cloudfile_4_location</th>\\n\",\n       \"      <th>run_40_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_40_cluster_name</th>\\n\",\n       \"      <th>run_40_database_1</th>\\n\",\n       \"      <th>run_40_has_taxanalysis</th>\\n\",\n       \"      <th>run_40_is_public</th>\\n\",\n       \"      <th>run_40_load_done</th>\\n\",\n       \"      <th>run_40_published</th>\\n\",\n       \"      <th>run_40_size</th>\\n\",\n       \"      <th>run_40_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_40_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_40_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_40_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_40_srafile_1_cluster</th>\\n\",\n       \"      <th>run_40_srafile_1_date</th>\\n\",\n       \"      <th>run_40_srafile_1_filename</th>\\n\",\n       \"      <th>run_40_srafile_1_md5</th>\\n\",\n       \"      <th>run_40_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_40_srafile_1_size</th>\\n\",\n       \"      <th>run_40_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_40_srafile_1_supertype</th>\\n\",\n       \"      <th>run_40_srafile_1_version</th>\\n\",\n       \"      <th>run_40_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_40_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_40_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_40_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_40_srafile_2_cluster</th>\\n\",\n       \"      <th>run_40_srafile_2_date</th>\\n\",\n       \"      <th>run_40_srafile_2_filename</th>\\n\",\n       \"      <th>run_40_srafile_2_md5</th>\\n\",\n       \"      <th>run_40_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_40_srafile_2_size</th>\\n\",\n       \"      <th>run_40_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_40_srafile_2_supertype</th>\\n\",\n       \"      <th>run_40_srafile_2_url</th>\\n\",\n       \"      <th>run_40_srafile_2_version</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_40_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_40_srafile_3_cluster</th>\\n\",\n       \"      <th>run_40_srafile_3_date</th>\\n\",\n       \"      <th>run_40_srafile_3_filename</th>\\n\",\n       \"      <th>run_40_srafile_3_md5</th>\\n\",\n       \"      <th>run_40_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_40_srafile_3_size</th>\\n\",\n       \"      <th>run_40_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_40_srafile_3_supertype</th>\\n\",\n       \"      <th>run_40_srafile_3_url</th>\\n\",\n       \"      <th>run_40_srafile_3_version</th>\\n\",\n       \"      <th>run_40_static_data_available</th>\\n\",\n       \"      <th>run_40_total_base_count</th>\\n\",\n       \"      <th>run_40_total_base_cs_native</th>\\n\",\n       \"      <th>run_40_total_bases</th>\\n\",\n       \"      <th>run_40_total_spots</th>\\n\",\n       \"      <th>run_41_accession</th>\\n\",\n       \"      <th>run_41_alias</th>\\n\",\n       \"      <th>run_41_base_A_count</th>\\n\",\n       \"      <th>run_41_base_C_count</th>\\n\",\n       \"      <th>run_41_base_G_count</th>\\n\",\n       \"      <th>run_41_base_N_count</th>\\n\",\n       \"      <th>run_41_base_T_count</th>\\n\",\n       \"      <th>run_41_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_41_cloudfile_1_location</th>\\n\",\n       \"      <th>run_41_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_41_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_41_cloudfile_2_location</th>\\n\",\n       \"      <th>run_41_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_41_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_41_cloudfile_3_location</th>\\n\",\n       \"      <th>run_41_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_41_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_41_cloudfile_4_location</th>\\n\",\n       \"      <th>run_41_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_41_cluster_name</th>\\n\",\n       \"      <th>run_41_database_1</th>\\n\",\n       \"      <th>run_41_has_taxanalysis</th>\\n\",\n       \"      <th>run_41_is_public</th>\\n\",\n       \"      <th>run_41_load_done</th>\\n\",\n       \"      <th>run_41_published</th>\\n\",\n       \"      <th>run_41_size</th>\\n\",\n       \"      <th>run_41_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_41_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_41_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_41_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_41_srafile_1_cluster</th>\\n\",\n       \"      <th>run_41_srafile_1_date</th>\\n\",\n       \"      <th>run_41_srafile_1_filename</th>\\n\",\n       \"      <th>run_41_srafile_1_md5</th>\\n\",\n       \"      <th>run_41_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_41_srafile_1_size</th>\\n\",\n       \"      <th>run_41_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_41_srafile_1_supertype</th>\\n\",\n       \"      <th>run_41_srafile_1_version</th>\\n\",\n       \"      <th>run_41_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_41_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_41_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_41_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_41_srafile_2_cluster</th>\\n\",\n       \"      <th>run_41_srafile_2_date</th>\\n\",\n       \"      <th>run_41_srafile_2_filename</th>\\n\",\n       \"      <th>run_41_srafile_2_md5</th>\\n\",\n       \"      <th>run_41_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_41_srafile_2_size</th>\\n\",\n       \"      <th>run_41_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_41_srafile_2_supertype</th>\\n\",\n       \"      <th>run_41_srafile_2_url</th>\\n\",\n       \"      <th>run_41_srafile_2_version</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_41_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_41_srafile_3_cluster</th>\\n\",\n       \"      <th>run_41_srafile_3_date</th>\\n\",\n       \"      <th>run_41_srafile_3_filename</th>\\n\",\n       \"      <th>run_41_srafile_3_md5</th>\\n\",\n       \"      <th>run_41_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_41_srafile_3_size</th>\\n\",\n       \"      <th>run_41_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_41_srafile_3_supertype</th>\\n\",\n       \"      <th>run_41_srafile_3_url</th>\\n\",\n       \"      <th>run_41_srafile_3_version</th>\\n\",\n       \"      <th>run_41_static_data_available</th>\\n\",\n       \"      <th>run_41_total_base_count</th>\\n\",\n       \"      <th>run_41_total_base_cs_native</th>\\n\",\n       \"      <th>run_41_total_bases</th>\\n\",\n       \"      <th>run_41_total_spots</th>\\n\",\n       \"      <th>run_42_accession</th>\\n\",\n       \"      <th>run_42_alias</th>\\n\",\n       \"      <th>run_42_base_A_count</th>\\n\",\n       \"      <th>run_42_base_C_count</th>\\n\",\n       \"      <th>run_42_base_G_count</th>\\n\",\n       \"      <th>run_42_base_N_count</th>\\n\",\n       \"      <th>run_42_base_T_count</th>\\n\",\n       \"      <th>run_42_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_42_cloudfile_1_location</th>\\n\",\n       \"      <th>run_42_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_42_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_42_cloudfile_2_location</th>\\n\",\n       \"      <th>run_42_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_42_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_42_cloudfile_3_location</th>\\n\",\n       \"      <th>run_42_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_42_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_42_cloudfile_4_location</th>\\n\",\n       \"      <th>run_42_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_42_cluster_name</th>\\n\",\n       \"      <th>run_42_database_1</th>\\n\",\n       \"      <th>run_42_has_taxanalysis</th>\\n\",\n       \"      <th>run_42_is_public</th>\\n\",\n       \"      <th>run_42_load_done</th>\\n\",\n       \"      <th>run_42_published</th>\\n\",\n       \"      <th>run_42_size</th>\\n\",\n       \"      <th>run_42_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_42_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_42_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_42_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_42_srafile_1_cluster</th>\\n\",\n       \"      <th>run_42_srafile_1_date</th>\\n\",\n       \"      <th>run_42_srafile_1_filename</th>\\n\",\n       \"      <th>run_42_srafile_1_md5</th>\\n\",\n       \"      <th>run_42_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_42_srafile_1_size</th>\\n\",\n       \"      <th>run_42_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_42_srafile_1_supertype</th>\\n\",\n       \"      <th>run_42_srafile_1_version</th>\\n\",\n       \"      <th>run_42_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_42_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_42_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_42_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_42_srafile_2_cluster</th>\\n\",\n       \"      <th>run_42_srafile_2_date</th>\\n\",\n       \"      <th>run_42_srafile_2_filename</th>\\n\",\n       \"      <th>run_42_srafile_2_md5</th>\\n\",\n       \"      <th>run_42_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_42_srafile_2_size</th>\\n\",\n       \"      <th>run_42_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_42_srafile_2_supertype</th>\\n\",\n       \"      <th>run_42_srafile_2_url</th>\\n\",\n       \"      <th>run_42_srafile_2_version</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_42_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_42_srafile_3_cluster</th>\\n\",\n       \"      <th>run_42_srafile_3_date</th>\\n\",\n       \"      <th>run_42_srafile_3_filename</th>\\n\",\n       \"      <th>run_42_srafile_3_md5</th>\\n\",\n       \"      <th>run_42_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_42_srafile_3_size</th>\\n\",\n       \"      <th>run_42_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_42_srafile_3_supertype</th>\\n\",\n       \"      <th>run_42_srafile_3_url</th>\\n\",\n       \"      <th>run_42_srafile_3_version</th>\\n\",\n       \"      <th>run_42_static_data_available</th>\\n\",\n       \"      <th>run_42_total_base_count</th>\\n\",\n       \"      <th>run_42_total_base_cs_native</th>\\n\",\n       \"      <th>run_42_total_bases</th>\\n\",\n       \"      <th>run_42_total_spots</th>\\n\",\n       \"      <th>run_43_accession</th>\\n\",\n       \"      <th>run_43_alias</th>\\n\",\n       \"      <th>run_43_base_A_count</th>\\n\",\n       \"      <th>run_43_base_C_count</th>\\n\",\n       \"      <th>run_43_base_G_count</th>\\n\",\n       \"      <th>run_43_base_N_count</th>\\n\",\n       \"      <th>run_43_base_T_count</th>\\n\",\n       \"      <th>run_43_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_43_cloudfile_1_location</th>\\n\",\n       \"      <th>run_43_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_43_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_43_cloudfile_2_location</th>\\n\",\n       \"      <th>run_43_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_43_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_43_cloudfile_3_location</th>\\n\",\n       \"      <th>run_43_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_43_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_43_cloudfile_4_location</th>\\n\",\n       \"      <th>run_43_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_43_cluster_name</th>\\n\",\n       \"      <th>run_43_database_1</th>\\n\",\n       \"      <th>run_43_has_taxanalysis</th>\\n\",\n       \"      <th>run_43_is_public</th>\\n\",\n       \"      <th>run_43_load_done</th>\\n\",\n       \"      <th>run_43_published</th>\\n\",\n       \"      <th>run_43_size</th>\\n\",\n       \"      <th>run_43_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_43_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_43_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_43_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_43_srafile_1_cluster</th>\\n\",\n       \"      <th>run_43_srafile_1_date</th>\\n\",\n       \"      <th>run_43_srafile_1_filename</th>\\n\",\n       \"      <th>run_43_srafile_1_md5</th>\\n\",\n       \"      <th>run_43_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_43_srafile_1_size</th>\\n\",\n       \"      <th>run_43_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_43_srafile_1_supertype</th>\\n\",\n       \"      <th>run_43_srafile_1_version</th>\\n\",\n       \"      <th>run_43_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_43_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_43_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_43_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_43_srafile_2_cluster</th>\\n\",\n       \"      <th>run_43_srafile_2_date</th>\\n\",\n       \"      <th>run_43_srafile_2_filename</th>\\n\",\n       \"      <th>run_43_srafile_2_md5</th>\\n\",\n       \"      <th>run_43_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_43_srafile_2_size</th>\\n\",\n       \"      <th>run_43_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_43_srafile_2_supertype</th>\\n\",\n       \"      <th>run_43_srafile_2_url</th>\\n\",\n       \"      <th>run_43_srafile_2_version</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_43_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_43_srafile_3_cluster</th>\\n\",\n       \"      <th>run_43_srafile_3_date</th>\\n\",\n       \"      <th>run_43_srafile_3_filename</th>\\n\",\n       \"      <th>run_43_srafile_3_md5</th>\\n\",\n       \"      <th>run_43_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_43_srafile_3_size</th>\\n\",\n       \"      <th>run_43_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_43_srafile_3_supertype</th>\\n\",\n       \"      <th>run_43_srafile_3_url</th>\\n\",\n       \"      <th>run_43_srafile_3_version</th>\\n\",\n       \"      <th>run_43_static_data_available</th>\\n\",\n       \"      <th>run_43_total_base_count</th>\\n\",\n       \"      <th>run_43_total_base_cs_native</th>\\n\",\n       \"      <th>run_43_total_bases</th>\\n\",\n       \"      <th>run_43_total_spots</th>\\n\",\n       \"      <th>run_44_accession</th>\\n\",\n       \"      <th>run_44_alias</th>\\n\",\n       \"      <th>run_44_base_A_count</th>\\n\",\n       \"      <th>run_44_base_C_count</th>\\n\",\n       \"      <th>run_44_base_G_count</th>\\n\",\n       \"      <th>run_44_base_N_count</th>\\n\",\n       \"      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\"      <th>run_44_published</th>\\n\",\n       \"      <th>run_44_size</th>\\n\",\n       \"      <th>run_44_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_44_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_44_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_44_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_44_srafile_1_cluster</th>\\n\",\n       \"      <th>run_44_srafile_1_date</th>\\n\",\n       \"      <th>run_44_srafile_1_filename</th>\\n\",\n       \"      <th>run_44_srafile_1_md5</th>\\n\",\n       \"      <th>run_44_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_44_srafile_1_size</th>\\n\",\n       \"      <th>run_44_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_44_srafile_1_supertype</th>\\n\",\n       \"      <th>run_44_srafile_1_version</th>\\n\",\n       \"      <th>run_44_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_44_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_44_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_44_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_44_srafile_2_cluster</th>\\n\",\n       \"      <th>run_44_srafile_2_date</th>\\n\",\n       \"      <th>run_44_srafile_2_filename</th>\\n\",\n       \"      <th>run_44_srafile_2_md5</th>\\n\",\n       \"      <th>run_44_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_44_srafile_2_size</th>\\n\",\n       \"      <th>run_44_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_44_srafile_2_supertype</th>\\n\",\n       \"      <th>run_44_srafile_2_url</th>\\n\",\n       \"      <th>run_44_srafile_2_version</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_44_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_44_srafile_3_cluster</th>\\n\",\n       \"      <th>run_44_srafile_3_date</th>\\n\",\n       \"      <th>run_44_srafile_3_filename</th>\\n\",\n       \"      <th>run_44_srafile_3_md5</th>\\n\",\n       \"      <th>run_44_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_44_srafile_3_size</th>\\n\",\n       \"      <th>run_44_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_44_srafile_3_supertype</th>\\n\",\n       \"      <th>run_44_srafile_3_url</th>\\n\",\n       \"      <th>run_44_srafile_3_version</th>\\n\",\n       \"      <th>run_44_static_data_available</th>\\n\",\n       \"      <th>run_44_total_base_count</th>\\n\",\n       \"      <th>run_44_total_base_cs_native</th>\\n\",\n       \"      <th>run_44_total_bases</th>\\n\",\n       \"      <th>run_44_total_spots</th>\\n\",\n       \"      <th>run_45_accession</th>\\n\",\n       \"      <th>run_45_alias</th>\\n\",\n       \"      <th>run_45_base_A_count</th>\\n\",\n       \"      <th>run_45_base_C_count</th>\\n\",\n       \"      <th>run_45_base_G_count</th>\\n\",\n       \"      <th>run_45_base_N_count</th>\\n\",\n       \"      <th>run_45_base_T_count</th>\\n\",\n       \"      <th>run_45_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_45_cloudfile_1_location</th>\\n\",\n       \"      <th>run_45_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_45_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_45_cloudfile_2_location</th>\\n\",\n       \"      <th>run_45_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_45_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_45_cloudfile_3_location</th>\\n\",\n       \"      <th>run_45_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_45_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_45_cloudfile_4_location</th>\\n\",\n       \"      <th>run_45_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_45_cluster_name</th>\\n\",\n       \"      <th>run_45_database_1</th>\\n\",\n       \"      <th>run_45_has_taxanalysis</th>\\n\",\n       \"      <th>run_45_is_public</th>\\n\",\n       \"      <th>run_45_load_done</th>\\n\",\n       \"      <th>run_45_published</th>\\n\",\n       \"      <th>run_45_size</th>\\n\",\n       \"      <th>run_45_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_45_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_45_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_45_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_45_srafile_1_cluster</th>\\n\",\n       \"      <th>run_45_srafile_1_date</th>\\n\",\n       \"      <th>run_45_srafile_1_filename</th>\\n\",\n       \"      <th>run_45_srafile_1_md5</th>\\n\",\n       \"      <th>run_45_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_45_srafile_1_size</th>\\n\",\n       \"      <th>run_45_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_45_srafile_1_supertype</th>\\n\",\n       \"      <th>run_45_srafile_1_version</th>\\n\",\n       \"      <th>run_45_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_45_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_45_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_45_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_45_srafile_2_cluster</th>\\n\",\n       \"      <th>run_45_srafile_2_date</th>\\n\",\n       \"      <th>run_45_srafile_2_filename</th>\\n\",\n       \"      <th>run_45_srafile_2_md5</th>\\n\",\n       \"      <th>run_45_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_45_srafile_2_size</th>\\n\",\n       \"      <th>run_45_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_45_srafile_2_supertype</th>\\n\",\n       \"      <th>run_45_srafile_2_url</th>\\n\",\n       \"      <th>run_45_srafile_2_version</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_45_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_45_srafile_3_cluster</th>\\n\",\n       \"      <th>run_45_srafile_3_date</th>\\n\",\n       \"      <th>run_45_srafile_3_filename</th>\\n\",\n       \"      <th>run_45_srafile_3_md5</th>\\n\",\n       \"      <th>run_45_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_45_srafile_3_size</th>\\n\",\n       \"      <th>run_45_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_45_srafile_3_supertype</th>\\n\",\n       \"      <th>run_45_srafile_3_url</th>\\n\",\n       \"      <th>run_45_srafile_3_version</th>\\n\",\n       \"      <th>run_45_static_data_available</th>\\n\",\n       \"      <th>run_45_total_base_count</th>\\n\",\n       \"      <th>run_45_total_base_cs_native</th>\\n\",\n       \"      <th>run_45_total_bases</th>\\n\",\n       \"      <th>run_45_total_spots</th>\\n\",\n       \"      <th>run_46_accession</th>\\n\",\n       \"      <th>run_46_alias</th>\\n\",\n       \"      <th>run_46_base_A_count</th>\\n\",\n       \"      <th>run_46_base_C_count</th>\\n\",\n       \"      <th>run_46_base_G_count</th>\\n\",\n       \"      <th>run_46_base_N_count</th>\\n\",\n       \"      <th>run_46_base_T_count</th>\\n\",\n       \"      <th>run_46_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_46_cloudfile_1_location</th>\\n\",\n       \"      <th>run_46_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_46_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_46_cloudfile_2_location</th>\\n\",\n       \"      <th>run_46_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_46_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_46_cloudfile_3_location</th>\\n\",\n       \"      <th>run_46_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_46_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_46_cloudfile_4_location</th>\\n\",\n       \"      <th>run_46_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_46_cluster_name</th>\\n\",\n       \"      <th>run_46_database_1</th>\\n\",\n       \"      <th>run_46_has_taxanalysis</th>\\n\",\n       \"      <th>run_46_is_public</th>\\n\",\n       \"      <th>run_46_load_done</th>\\n\",\n       \"      <th>run_46_published</th>\\n\",\n       \"      <th>run_46_size</th>\\n\",\n       \"      <th>run_46_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_46_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_46_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_46_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_46_srafile_1_cluster</th>\\n\",\n       \"      <th>run_46_srafile_1_date</th>\\n\",\n       \"      <th>run_46_srafile_1_filename</th>\\n\",\n       \"      <th>run_46_srafile_1_md5</th>\\n\",\n       \"      <th>run_46_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_46_srafile_1_size</th>\\n\",\n       \"      <th>run_46_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_46_srafile_1_supertype</th>\\n\",\n       \"      <th>run_46_srafile_1_version</th>\\n\",\n       \"      <th>run_46_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_46_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_46_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_46_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_46_srafile_2_cluster</th>\\n\",\n       \"      <th>run_46_srafile_2_date</th>\\n\",\n       \"      <th>run_46_srafile_2_filename</th>\\n\",\n       \"      <th>run_46_srafile_2_md5</th>\\n\",\n       \"      <th>run_46_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_46_srafile_2_size</th>\\n\",\n       \"      <th>run_46_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_46_srafile_2_supertype</th>\\n\",\n       \"      <th>run_46_srafile_2_url</th>\\n\",\n       \"      <th>run_46_srafile_2_version</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_46_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_46_srafile_3_cluster</th>\\n\",\n       \"      <th>run_46_srafile_3_date</th>\\n\",\n       \"      <th>run_46_srafile_3_filename</th>\\n\",\n       \"      <th>run_46_srafile_3_md5</th>\\n\",\n       \"      <th>run_46_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_46_srafile_3_size</th>\\n\",\n       \"      <th>run_46_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_46_srafile_3_supertype</th>\\n\",\n       \"      <th>run_46_srafile_3_url</th>\\n\",\n       \"      <th>run_46_srafile_3_version</th>\\n\",\n       \"      <th>run_46_static_data_available</th>\\n\",\n       \"      <th>run_46_total_base_count</th>\\n\",\n       \"      <th>run_46_total_base_cs_native</th>\\n\",\n       \"      <th>run_46_total_bases</th>\\n\",\n       \"      <th>run_46_total_spots</th>\\n\",\n       \"      <th>run_47_accession</th>\\n\",\n       \"      <th>run_47_alias</th>\\n\",\n       \"      <th>run_47_base_A_count</th>\\n\",\n       \"      <th>run_47_base_C_count</th>\\n\",\n       \"      <th>run_47_base_G_count</th>\\n\",\n       \"      <th>run_47_base_N_count</th>\\n\",\n       \"      <th>run_47_base_T_count</th>\\n\",\n       \"      <th>run_47_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_47_cloudfile_1_location</th>\\n\",\n       \"      <th>run_47_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_47_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_47_cloudfile_2_location</th>\\n\",\n       \"      <th>run_47_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_47_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_47_cloudfile_3_location</th>\\n\",\n       \"      <th>run_47_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_47_cloudfile_4_filetype</th>\\n\",\n       \"      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<th>run_47_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_47_srafile_1_size</th>\\n\",\n       \"      <th>run_47_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_47_srafile_1_supertype</th>\\n\",\n       \"      <th>run_47_srafile_1_version</th>\\n\",\n       \"      <th>run_47_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_47_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_47_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_47_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_47_srafile_2_cluster</th>\\n\",\n       \"      <th>run_47_srafile_2_date</th>\\n\",\n       \"      <th>run_47_srafile_2_filename</th>\\n\",\n       \"      <th>run_47_srafile_2_md5</th>\\n\",\n       \"      <th>run_47_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_47_srafile_2_size</th>\\n\",\n       \"      <th>run_47_srafile_2_sratoolkit</th>\\n\",\n       \"      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     <th>run_47_srafile_3_cluster</th>\\n\",\n       \"      <th>run_47_srafile_3_date</th>\\n\",\n       \"      <th>run_47_srafile_3_filename</th>\\n\",\n       \"      <th>run_47_srafile_3_md5</th>\\n\",\n       \"      <th>run_47_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_47_srafile_3_size</th>\\n\",\n       \"      <th>run_47_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_47_srafile_3_supertype</th>\\n\",\n       \"      <th>run_47_srafile_3_url</th>\\n\",\n       \"      <th>run_47_srafile_3_version</th>\\n\",\n       \"      <th>run_47_static_data_available</th>\\n\",\n       \"      <th>run_47_total_base_count</th>\\n\",\n       \"      <th>run_47_total_base_cs_native</th>\\n\",\n       \"      <th>run_47_total_bases</th>\\n\",\n       \"      <th>run_47_total_spots</th>\\n\",\n       \"      <th>run_48_accession</th>\\n\",\n       \"      <th>run_48_alias</th>\\n\",\n       \"      <th>run_48_base_A_count</th>\\n\",\n       \"      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   \"      <th>run_48_has_taxanalysis</th>\\n\",\n       \"      <th>run_48_is_public</th>\\n\",\n       \"      <th>run_48_load_done</th>\\n\",\n       \"      <th>run_48_published</th>\\n\",\n       \"      <th>run_48_size</th>\\n\",\n       \"      <th>run_48_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_48_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_48_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_48_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_48_srafile_1_cluster</th>\\n\",\n       \"      <th>run_48_srafile_1_date</th>\\n\",\n       \"      <th>run_48_srafile_1_filename</th>\\n\",\n       \"      <th>run_48_srafile_1_md5</th>\\n\",\n       \"      <th>run_48_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_48_srafile_1_size</th>\\n\",\n       \"      <th>run_48_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_48_srafile_1_supertype</th>\\n\",\n       \"      <th>run_48_srafile_1_version</th>\\n\",\n       \"      <th>run_48_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_48_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_48_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_48_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_48_srafile_2_cluster</th>\\n\",\n       \"      <th>run_48_srafile_2_date</th>\\n\",\n       \"      <th>run_48_srafile_2_filename</th>\\n\",\n       \"      <th>run_48_srafile_2_md5</th>\\n\",\n       \"      <th>run_48_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_48_srafile_2_size</th>\\n\",\n       \"      <th>run_48_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_48_srafile_2_supertype</th>\\n\",\n       \"      <th>run_48_srafile_2_url</th>\\n\",\n       \"      <th>run_48_srafile_2_version</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_48_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_48_srafile_3_cluster</th>\\n\",\n       \"      <th>run_48_srafile_3_date</th>\\n\",\n       \"      <th>run_48_srafile_3_filename</th>\\n\",\n       \"      <th>run_48_srafile_3_md5</th>\\n\",\n       \"      <th>run_48_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_48_srafile_3_size</th>\\n\",\n       \"      <th>run_48_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_48_srafile_3_supertype</th>\\n\",\n       \"      <th>run_48_srafile_3_url</th>\\n\",\n       \"      <th>run_48_srafile_3_version</th>\\n\",\n       \"      <th>run_48_static_data_available</th>\\n\",\n       \"      <th>run_48_total_base_count</th>\\n\",\n       \"      <th>run_48_total_base_cs_native</th>\\n\",\n       \"      <th>run_48_total_bases</th>\\n\",\n       \"      <th>run_48_total_spots</th>\\n\",\n       \"      <th>run_49_accession</th>\\n\",\n       \"      <th>run_49_alias</th>\\n\",\n       \"      <th>run_49_base_A_count</th>\\n\",\n       \"      <th>run_49_base_C_count</th>\\n\",\n       \"      <th>run_49_base_G_count</th>\\n\",\n       \"      <th>run_49_base_N_count</th>\\n\",\n       \"      <th>run_49_base_T_count</th>\\n\",\n       \"      <th>run_49_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_49_cloudfile_1_location</th>\\n\",\n       \"      <th>run_49_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_49_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_49_cloudfile_2_location</th>\\n\",\n       \"      <th>run_49_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_49_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_49_cloudfile_3_location</th>\\n\",\n       \"      <th>run_49_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_49_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_49_cloudfile_4_location</th>\\n\",\n       \"      <th>run_49_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_49_cluster_name</th>\\n\",\n       \"      <th>run_49_database_1</th>\\n\",\n       \"      <th>run_49_has_taxanalysis</th>\\n\",\n       \"      <th>run_49_is_public</th>\\n\",\n       \"      <th>run_49_load_done</th>\\n\",\n       \"      <th>run_49_published</th>\\n\",\n       \"      <th>run_49_size</th>\\n\",\n       \"      <th>run_49_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_49_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_49_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_49_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_49_srafile_1_cluster</th>\\n\",\n       \"      <th>run_49_srafile_1_date</th>\\n\",\n       \"      <th>run_49_srafile_1_filename</th>\\n\",\n       \"      <th>run_49_srafile_1_md5</th>\\n\",\n       \"      <th>run_49_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_49_srafile_1_size</th>\\n\",\n       \"      <th>run_49_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_49_srafile_1_supertype</th>\\n\",\n       \"      <th>run_49_srafile_1_version</th>\\n\",\n       \"      <th>run_49_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_49_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      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<th>run_49_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_49_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_49_srafile_3_cluster</th>\\n\",\n       \"      <th>run_49_srafile_3_date</th>\\n\",\n       \"      <th>run_49_srafile_3_filename</th>\\n\",\n       \"      <th>run_49_srafile_3_md5</th>\\n\",\n       \"      <th>run_49_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_49_srafile_3_size</th>\\n\",\n       \"      <th>run_49_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_49_srafile_3_supertype</th>\\n\",\n       \"      <th>run_49_srafile_3_url</th>\\n\",\n       \"      <th>run_49_srafile_3_version</th>\\n\",\n       \"      <th>run_49_static_data_available</th>\\n\",\n       \"      <th>run_49_total_base_count</th>\\n\",\n       \"      <th>run_49_total_base_cs_native</th>\\n\",\n       \"      <th>run_49_total_bases</th>\\n\",\n       \"      <th>run_49_total_spots</th>\\n\",\n       \"      <th>run_4_accession</th>\\n\",\n       \"      <th>run_4_alias</th>\\n\",\n       \"      <th>run_4_base_A_count</th>\\n\",\n       \"      <th>run_4_base_C_count</th>\\n\",\n       \"      <th>run_4_base_G_count</th>\\n\",\n       \"      <th>run_4_base_N_count</th>\\n\",\n       \"      <th>run_4_base_T_count</th>\\n\",\n       \"      <th>run_4_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_4_cloudfile_1_location</th>\\n\",\n       \"      <th>run_4_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_4_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_4_cloudfile_2_location</th>\\n\",\n       \"      <th>run_4_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_4_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_4_cloudfile_3_location</th>\\n\",\n       \"      <th>run_4_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_4_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_4_cloudfile_4_location</th>\\n\",\n       \"      <th>run_4_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_4_cluster_name</th>\\n\",\n       \"      <th>run_4_database_1</th>\\n\",\n       \"      <th>run_4_has_taxanalysis</th>\\n\",\n       \"      <th>run_4_is_public</th>\\n\",\n       \"      <th>run_4_load_done</th>\\n\",\n       \"      <th>run_4_published</th>\\n\",\n       \"      <th>run_4_size</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_4_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_4_srafile_1_cluster</th>\\n\",\n       \"      <th>run_4_srafile_1_date</th>\\n\",\n       \"      <th>run_4_srafile_1_filename</th>\\n\",\n       \"      <th>run_4_srafile_1_md5</th>\\n\",\n       \"      <th>run_4_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_1_size</th>\\n\",\n       \"      <th>run_4_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_1_supertype</th>\\n\",\n       \"      <th>run_4_srafile_1_url</th>\\n\",\n       \"      <th>run_4_srafile_1_version</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_2_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_2_cluster</th>\\n\",\n       \"      <th>run_4_srafile_2_date</th>\\n\",\n       \"      <th>run_4_srafile_2_filename</th>\\n\",\n       \"      <th>run_4_srafile_2_md5</th>\\n\",\n       \"      <th>run_4_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_2_size</th>\\n\",\n       \"      <th>run_4_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_2_supertype</th>\\n\",\n       \"      <th>run_4_srafile_2_url</th>\\n\",\n       \"      <th>run_4_srafile_2_version</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_4_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_4_srafile_3_cluster</th>\\n\",\n       \"      <th>run_4_srafile_3_date</th>\\n\",\n       \"      <th>run_4_srafile_3_filename</th>\\n\",\n       \"      <th>run_4_srafile_3_md5</th>\\n\",\n       \"      <th>run_4_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_3_size</th>\\n\",\n       \"      <th>run_4_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_3_supertype</th>\\n\",\n       \"      <th>run_4_srafile_3_url</th>\\n\",\n       \"      <th>run_4_srafile_3_version</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_4_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_4_srafile_4_cluster</th>\\n\",\n       \"      <th>run_4_srafile_4_date</th>\\n\",\n       \"      <th>run_4_srafile_4_filename</th>\\n\",\n       \"      <th>run_4_srafile_4_md5</th>\\n\",\n       \"      <th>run_4_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_4_size</th>\\n\",\n       \"      <th>run_4_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_4_supertype</th>\\n\",\n       \"      <th>run_4_srafile_4_url</th>\\n\",\n       \"      <th>run_4_srafile_4_version</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_3_access_type</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_3_org</th>\\n\",\n       \"      <th>run_4_srafile_5_alternative_3_url</th>\\n\",\n       \"      <th>run_4_srafile_5_cluster</th>\\n\",\n       \"      <th>run_4_srafile_5_date</th>\\n\",\n       \"      <th>run_4_srafile_5_filename</th>\\n\",\n       \"      <th>run_4_srafile_5_md5</th>\\n\",\n       \"      <th>run_4_srafile_5_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_5_size</th>\\n\",\n       \"      <th>run_4_srafile_5_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_5_supertype</th>\\n\",\n       \"      <th>run_4_srafile_5_url</th>\\n\",\n       \"      <th>run_4_srafile_5_version</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_1_access_type</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_1_org</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_1_url</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_2_access_type</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_2_org</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_2_url</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_3_access_type</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_3_org</th>\\n\",\n       \"      <th>run_4_srafile_6_alternative_3_url</th>\\n\",\n       \"      <th>run_4_srafile_6_cluster</th>\\n\",\n       \"      <th>run_4_srafile_6_date</th>\\n\",\n       \"      <th>run_4_srafile_6_filename</th>\\n\",\n       \"      <th>run_4_srafile_6_md5</th>\\n\",\n       \"      <th>run_4_srafile_6_semantic_name</th>\\n\",\n       \"      <th>run_4_srafile_6_size</th>\\n\",\n       \"      <th>run_4_srafile_6_sratoolkit</th>\\n\",\n       \"      <th>run_4_srafile_6_supertype</th>\\n\",\n       \"      <th>run_4_srafile_6_url</th>\\n\",\n       \"      <th>run_4_srafile_6_version</th>\\n\",\n       \"      <th>run_4_static_data_available</th>\\n\",\n       \"      <th>run_4_total_base_count</th>\\n\",\n       \"      <th>run_4_total_base_cs_native</th>\\n\",\n       \"      <th>run_4_total_bases</th>\\n\",\n       \"      <th>run_4_total_spots</th>\\n\",\n       \"      <th>run_50_accession</th>\\n\",\n       \"      <th>run_50_alias</th>\\n\",\n       \"      <th>run_50_base_A_count</th>\\n\",\n       \"      <th>run_50_base_C_count</th>\\n\",\n       \"      <th>run_50_base_G_count</th>\\n\",\n       \"      <th>run_50_base_N_count</th>\\n\",\n       \"      <th>run_50_base_T_count</th>\\n\",\n       \"      <th>run_50_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_50_cloudfile_1_location</th>\\n\",\n       \"      <th>run_50_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_50_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_50_cloudfile_2_location</th>\\n\",\n       \"      <th>run_50_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_50_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_50_cloudfile_3_location</th>\\n\",\n       \"      <th>run_50_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_50_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_50_cloudfile_4_location</th>\\n\",\n       \"      <th>run_50_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_50_cluster_name</th>\\n\",\n       \"      <th>run_50_database_1</th>\\n\",\n       \"      <th>run_50_has_taxanalysis</th>\\n\",\n       \"      <th>run_50_is_public</th>\\n\",\n       \"      <th>run_50_load_done</th>\\n\",\n       \"      <th>run_50_published</th>\\n\",\n       \"      <th>run_50_size</th>\\n\",\n       \"      <th>run_50_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_50_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_50_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_50_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_50_srafile_1_cluster</th>\\n\",\n       \"      <th>run_50_srafile_1_date</th>\\n\",\n       \"      <th>run_50_srafile_1_filename</th>\\n\",\n       \"      <th>run_50_srafile_1_md5</th>\\n\",\n       \"      <th>run_50_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_50_srafile_1_size</th>\\n\",\n       \"      <th>run_50_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_50_srafile_1_supertype</th>\\n\",\n       \"      <th>run_50_srafile_1_version</th>\\n\",\n       \"      <th>run_50_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_50_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_50_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_50_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_50_srafile_2_cluster</th>\\n\",\n       \"      <th>run_50_srafile_2_date</th>\\n\",\n       \"      <th>run_50_srafile_2_filename</th>\\n\",\n       \"      <th>run_50_srafile_2_md5</th>\\n\",\n       \"      <th>run_50_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_50_srafile_2_size</th>\\n\",\n       \"      <th>run_50_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_50_srafile_2_supertype</th>\\n\",\n       \"      <th>run_50_srafile_2_url</th>\\n\",\n       \"      <th>run_50_srafile_2_version</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_50_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_50_srafile_3_cluster</th>\\n\",\n       \"      <th>run_50_srafile_3_date</th>\\n\",\n       \"      <th>run_50_srafile_3_filename</th>\\n\",\n       \"      <th>run_50_srafile_3_md5</th>\\n\",\n       \"      <th>run_50_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_50_srafile_3_size</th>\\n\",\n       \"      <th>run_50_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_50_srafile_3_supertype</th>\\n\",\n       \"      <th>run_50_srafile_3_url</th>\\n\",\n       \"      <th>run_50_srafile_3_version</th>\\n\",\n       \"      <th>run_50_static_data_available</th>\\n\",\n       \"      <th>run_50_total_base_count</th>\\n\",\n       \"      <th>run_50_total_base_cs_native</th>\\n\",\n       \"      <th>run_50_total_bases</th>\\n\",\n       \"      <th>run_50_total_spots</th>\\n\",\n       \"      <th>run_51_accession</th>\\n\",\n       \"      <th>run_51_alias</th>\\n\",\n       \"      <th>run_51_base_A_count</th>\\n\",\n       \"      <th>run_51_base_C_count</th>\\n\",\n       \"      <th>run_51_base_G_count</th>\\n\",\n       \"      <th>run_51_base_N_count</th>\\n\",\n       \"      <th>run_51_base_T_count</th>\\n\",\n       \"      <th>run_51_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_51_cloudfile_1_location</th>\\n\",\n       \"      <th>run_51_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_51_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_51_cloudfile_2_location</th>\\n\",\n       \"      <th>run_51_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_51_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_51_cloudfile_3_location</th>\\n\",\n       \"      <th>run_51_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_51_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_51_cloudfile_4_location</th>\\n\",\n       \"      <th>run_51_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_51_cluster_name</th>\\n\",\n       \"      <th>run_51_database_1</th>\\n\",\n       \"      <th>run_51_has_taxanalysis</th>\\n\",\n       \"      <th>run_51_is_public</th>\\n\",\n       \"      <th>run_51_load_done</th>\\n\",\n       \"      <th>run_51_published</th>\\n\",\n       \"      <th>run_51_size</th>\\n\",\n       \"      <th>run_51_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_51_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_51_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_51_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_51_srafile_1_cluster</th>\\n\",\n       \"      <th>run_51_srafile_1_date</th>\\n\",\n       \"      <th>run_51_srafile_1_filename</th>\\n\",\n       \"      <th>run_51_srafile_1_md5</th>\\n\",\n       \"      <th>run_51_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_51_srafile_1_size</th>\\n\",\n       \"      <th>run_51_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_51_srafile_1_supertype</th>\\n\",\n       \"      <th>run_51_srafile_1_version</th>\\n\",\n       \"      <th>run_51_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_51_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_51_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_51_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_51_srafile_2_cluster</th>\\n\",\n       \"      <th>run_51_srafile_2_date</th>\\n\",\n       \"      <th>run_51_srafile_2_filename</th>\\n\",\n       \"      <th>run_51_srafile_2_md5</th>\\n\",\n       \"      <th>run_51_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_51_srafile_2_size</th>\\n\",\n       \"      <th>run_51_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_51_srafile_2_supertype</th>\\n\",\n       \"      <th>run_51_srafile_2_url</th>\\n\",\n       \"      <th>run_51_srafile_2_version</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_51_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_51_srafile_3_cluster</th>\\n\",\n       \"      <th>run_51_srafile_3_date</th>\\n\",\n       \"      <th>run_51_srafile_3_filename</th>\\n\",\n       \"      <th>run_51_srafile_3_md5</th>\\n\",\n       \"      <th>run_51_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_51_srafile_3_size</th>\\n\",\n       \"      <th>run_51_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_51_srafile_3_supertype</th>\\n\",\n       \"      <th>run_51_srafile_3_url</th>\\n\",\n       \"      <th>run_51_srafile_3_version</th>\\n\",\n       \"      <th>run_51_static_data_available</th>\\n\",\n       \"      <th>run_51_total_base_count</th>\\n\",\n       \"      <th>run_51_total_base_cs_native</th>\\n\",\n       \"      <th>run_51_total_bases</th>\\n\",\n       \"      <th>run_51_total_spots</th>\\n\",\n       \"      <th>run_52_accession</th>\\n\",\n       \"      <th>run_52_alias</th>\\n\",\n       \"      <th>run_52_base_A_count</th>\\n\",\n       \"      <th>run_52_base_C_count</th>\\n\",\n       \"      <th>run_52_base_G_count</th>\\n\",\n       \"      <th>run_52_base_N_count</th>\\n\",\n       \"      <th>run_52_base_T_count</th>\\n\",\n       \"      <th>run_52_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_52_cloudfile_1_location</th>\\n\",\n       \"      <th>run_52_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_52_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_52_cloudfile_2_location</th>\\n\",\n       \"      <th>run_52_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_52_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_52_cloudfile_3_location</th>\\n\",\n       \"      <th>run_52_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_52_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_52_cloudfile_4_location</th>\\n\",\n       \"      <th>run_52_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_52_cluster_name</th>\\n\",\n       \"      <th>run_52_database_1</th>\\n\",\n       \"      <th>run_52_has_taxanalysis</th>\\n\",\n       \"      <th>run_52_is_public</th>\\n\",\n       \"      <th>run_52_load_done</th>\\n\",\n       \"      <th>run_52_published</th>\\n\",\n       \"      <th>run_52_size</th>\\n\",\n       \"      <th>run_52_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_52_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_52_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_52_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_52_srafile_1_cluster</th>\\n\",\n       \"      <th>run_52_srafile_1_date</th>\\n\",\n       \"      <th>run_52_srafile_1_filename</th>\\n\",\n       \"      <th>run_52_srafile_1_md5</th>\\n\",\n       \"      <th>run_52_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_52_srafile_1_size</th>\\n\",\n       \"      <th>run_52_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_52_srafile_1_supertype</th>\\n\",\n       \"      <th>run_52_srafile_1_version</th>\\n\",\n       \"      <th>run_52_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_52_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_52_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_52_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_52_srafile_2_cluster</th>\\n\",\n       \"      <th>run_52_srafile_2_date</th>\\n\",\n       \"      <th>run_52_srafile_2_filename</th>\\n\",\n       \"      <th>run_52_srafile_2_md5</th>\\n\",\n       \"      <th>run_52_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_52_srafile_2_size</th>\\n\",\n       \"      <th>run_52_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_52_srafile_2_supertype</th>\\n\",\n       \"      <th>run_52_srafile_2_url</th>\\n\",\n       \"      <th>run_52_srafile_2_version</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_52_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_52_srafile_3_cluster</th>\\n\",\n       \"      <th>run_52_srafile_3_date</th>\\n\",\n       \"      <th>run_52_srafile_3_filename</th>\\n\",\n       \"      <th>run_52_srafile_3_md5</th>\\n\",\n       \"      <th>run_52_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_52_srafile_3_size</th>\\n\",\n       \"      <th>run_52_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_52_srafile_3_supertype</th>\\n\",\n       \"      <th>run_52_srafile_3_url</th>\\n\",\n       \"      <th>run_52_srafile_3_version</th>\\n\",\n       \"      <th>run_52_static_data_available</th>\\n\",\n       \"      <th>run_52_total_base_count</th>\\n\",\n       \"      <th>run_52_total_base_cs_native</th>\\n\",\n       \"      <th>run_52_total_bases</th>\\n\",\n       \"      <th>run_52_total_spots</th>\\n\",\n       \"      <th>run_53_accession</th>\\n\",\n       \"      <th>run_53_alias</th>\\n\",\n       \"      <th>run_53_base_A_count</th>\\n\",\n       \"      <th>run_53_base_C_count</th>\\n\",\n       \"      <th>run_53_base_G_count</th>\\n\",\n       \"      <th>run_53_base_N_count</th>\\n\",\n       \"      <th>run_53_base_T_count</th>\\n\",\n       \"      <th>run_53_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_53_cloudfile_1_location</th>\\n\",\n       \"      <th>run_53_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_53_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_53_cloudfile_2_location</th>\\n\",\n       \"      <th>run_53_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_53_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_53_cloudfile_3_location</th>\\n\",\n       \"      <th>run_53_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_53_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_53_cloudfile_4_location</th>\\n\",\n       \"      <th>run_53_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_53_cluster_name</th>\\n\",\n       \"      <th>run_53_database_1</th>\\n\",\n       \"      <th>run_53_has_taxanalysis</th>\\n\",\n       \"      <th>run_53_is_public</th>\\n\",\n       \"      <th>run_53_load_done</th>\\n\",\n       \"      <th>run_53_published</th>\\n\",\n       \"      <th>run_53_size</th>\\n\",\n       \"      <th>run_53_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_53_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_53_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_53_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_53_srafile_1_cluster</th>\\n\",\n       \"      <th>run_53_srafile_1_date</th>\\n\",\n       \"      <th>run_53_srafile_1_filename</th>\\n\",\n       \"      <th>run_53_srafile_1_md5</th>\\n\",\n       \"      <th>run_53_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_53_srafile_1_size</th>\\n\",\n       \"      <th>run_53_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_53_srafile_1_supertype</th>\\n\",\n       \"      <th>run_53_srafile_1_version</th>\\n\",\n       \"      <th>run_53_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_53_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_53_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_53_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_53_srafile_2_cluster</th>\\n\",\n       \"      <th>run_53_srafile_2_date</th>\\n\",\n       \"      <th>run_53_srafile_2_filename</th>\\n\",\n       \"      <th>run_53_srafile_2_md5</th>\\n\",\n       \"      <th>run_53_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_53_srafile_2_size</th>\\n\",\n       \"      <th>run_53_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_53_srafile_2_supertype</th>\\n\",\n       \"      <th>run_53_srafile_2_url</th>\\n\",\n       \"      <th>run_53_srafile_2_version</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_53_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_53_srafile_3_cluster</th>\\n\",\n       \"      <th>run_53_srafile_3_date</th>\\n\",\n       \"      <th>run_53_srafile_3_filename</th>\\n\",\n       \"      <th>run_53_srafile_3_md5</th>\\n\",\n       \"      <th>run_53_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_53_srafile_3_size</th>\\n\",\n       \"      <th>run_53_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_53_srafile_3_supertype</th>\\n\",\n       \"      <th>run_53_srafile_3_url</th>\\n\",\n       \"      <th>run_53_srafile_3_version</th>\\n\",\n       \"      <th>run_53_static_data_available</th>\\n\",\n       \"      <th>run_53_total_base_count</th>\\n\",\n       \"      <th>run_53_total_base_cs_native</th>\\n\",\n       \"      <th>run_53_total_bases</th>\\n\",\n       \"      <th>run_53_total_spots</th>\\n\",\n       \"      <th>run_54_accession</th>\\n\",\n       \"      <th>run_54_alias</th>\\n\",\n       \"      <th>run_54_base_A_count</th>\\n\",\n       \"      <th>run_54_base_C_count</th>\\n\",\n       \"      <th>run_54_base_G_count</th>\\n\",\n       \"      <th>run_54_base_N_count</th>\\n\",\n       \"      <th>run_54_base_T_count</th>\\n\",\n       \"      <th>run_54_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_54_cloudfile_1_location</th>\\n\",\n       \"      <th>run_54_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_54_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_54_cloudfile_2_location</th>\\n\",\n       \"      <th>run_54_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_54_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_54_cloudfile_3_location</th>\\n\",\n       \"      <th>run_54_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_54_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_54_cloudfile_4_location</th>\\n\",\n       \"      <th>run_54_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_54_cluster_name</th>\\n\",\n       \"      <th>run_54_database_1</th>\\n\",\n       \"      <th>run_54_has_taxanalysis</th>\\n\",\n       \"      <th>run_54_is_public</th>\\n\",\n       \"      <th>run_54_load_done</th>\\n\",\n       \"      <th>run_54_published</th>\\n\",\n       \"      <th>run_54_size</th>\\n\",\n       \"      <th>run_54_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_54_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_54_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_54_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_54_srafile_1_cluster</th>\\n\",\n       \"      <th>run_54_srafile_1_date</th>\\n\",\n       \"      <th>run_54_srafile_1_filename</th>\\n\",\n       \"      <th>run_54_srafile_1_md5</th>\\n\",\n       \"      <th>run_54_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_54_srafile_1_size</th>\\n\",\n       \"      <th>run_54_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_54_srafile_1_supertype</th>\\n\",\n       \"      <th>run_54_srafile_1_version</th>\\n\",\n       \"      <th>run_54_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_54_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_54_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_54_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_54_srafile_2_cluster</th>\\n\",\n       \"      <th>run_54_srafile_2_date</th>\\n\",\n       \"      <th>run_54_srafile_2_filename</th>\\n\",\n       \"      <th>run_54_srafile_2_md5</th>\\n\",\n       \"      <th>run_54_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_54_srafile_2_size</th>\\n\",\n       \"      <th>run_54_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_54_srafile_2_supertype</th>\\n\",\n       \"      <th>run_54_srafile_2_url</th>\\n\",\n       \"      <th>run_54_srafile_2_version</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_54_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_54_srafile_3_cluster</th>\\n\",\n       \"      <th>run_54_srafile_3_date</th>\\n\",\n       \"      <th>run_54_srafile_3_filename</th>\\n\",\n       \"      <th>run_54_srafile_3_md5</th>\\n\",\n       \"      <th>run_54_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_54_srafile_3_size</th>\\n\",\n       \"      <th>run_54_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_54_srafile_3_supertype</th>\\n\",\n       \"      <th>run_54_srafile_3_url</th>\\n\",\n       \"      <th>run_54_srafile_3_version</th>\\n\",\n       \"      <th>run_54_static_data_available</th>\\n\",\n       \"      <th>run_54_total_base_count</th>\\n\",\n       \"      <th>run_54_total_base_cs_native</th>\\n\",\n       \"      <th>run_54_total_bases</th>\\n\",\n       \"      <th>run_54_total_spots</th>\\n\",\n       \"      <th>run_55_accession</th>\\n\",\n       \"      <th>run_55_alias</th>\\n\",\n       \"      <th>run_55_base_A_count</th>\\n\",\n       \"      <th>run_55_base_C_count</th>\\n\",\n       \"      <th>run_55_base_G_count</th>\\n\",\n       \"      <th>run_55_base_N_count</th>\\n\",\n       \"      <th>run_55_base_T_count</th>\\n\",\n       \"      <th>run_55_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_55_cloudfile_1_location</th>\\n\",\n       \"      <th>run_55_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_55_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_55_cloudfile_2_location</th>\\n\",\n       \"      <th>run_55_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_55_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_55_cloudfile_3_location</th>\\n\",\n       \"      <th>run_55_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_55_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_55_cloudfile_4_location</th>\\n\",\n       \"      <th>run_55_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_55_cluster_name</th>\\n\",\n       \"      <th>run_55_database_1</th>\\n\",\n       \"      <th>run_55_has_taxanalysis</th>\\n\",\n       \"      <th>run_55_is_public</th>\\n\",\n       \"      <th>run_55_load_done</th>\\n\",\n       \"      <th>run_55_published</th>\\n\",\n       \"      <th>run_55_size</th>\\n\",\n       \"      <th>run_55_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_55_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_55_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_55_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_55_srafile_1_cluster</th>\\n\",\n       \"      <th>run_55_srafile_1_date</th>\\n\",\n       \"      <th>run_55_srafile_1_filename</th>\\n\",\n       \"      <th>run_55_srafile_1_md5</th>\\n\",\n       \"      <th>run_55_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_55_srafile_1_size</th>\\n\",\n       \"      <th>run_55_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_55_srafile_1_supertype</th>\\n\",\n       \"      <th>run_55_srafile_1_version</th>\\n\",\n       \"      <th>run_55_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_55_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_55_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_55_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_55_srafile_2_cluster</th>\\n\",\n       \"      <th>run_55_srafile_2_date</th>\\n\",\n       \"      <th>run_55_srafile_2_filename</th>\\n\",\n       \"      <th>run_55_srafile_2_md5</th>\\n\",\n       \"      <th>run_55_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_55_srafile_2_size</th>\\n\",\n       \"      <th>run_55_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_55_srafile_2_supertype</th>\\n\",\n       \"      <th>run_55_srafile_2_url</th>\\n\",\n       \"      <th>run_55_srafile_2_version</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_55_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_55_srafile_3_cluster</th>\\n\",\n       \"      <th>run_55_srafile_3_date</th>\\n\",\n       \"      <th>run_55_srafile_3_filename</th>\\n\",\n       \"      <th>run_55_srafile_3_md5</th>\\n\",\n       \"      <th>run_55_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_55_srafile_3_size</th>\\n\",\n       \"      <th>run_55_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_55_srafile_3_supertype</th>\\n\",\n       \"      <th>run_55_srafile_3_url</th>\\n\",\n       \"      <th>run_55_srafile_3_version</th>\\n\",\n       \"      <th>run_55_static_data_available</th>\\n\",\n       \"      <th>run_55_total_base_count</th>\\n\",\n       \"      <th>run_55_total_base_cs_native</th>\\n\",\n       \"      <th>run_55_total_bases</th>\\n\",\n       \"      <th>run_55_total_spots</th>\\n\",\n       \"      <th>run_56_accession</th>\\n\",\n       \"      <th>run_56_alias</th>\\n\",\n       \"      <th>run_56_base_A_count</th>\\n\",\n       \"      <th>run_56_base_C_count</th>\\n\",\n       \"      <th>run_56_base_G_count</th>\\n\",\n       \"      <th>run_56_base_N_count</th>\\n\",\n       \"      <th>run_56_base_T_count</th>\\n\",\n       \"      <th>run_56_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_56_cloudfile_1_location</th>\\n\",\n       \"      <th>run_56_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_56_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_56_cloudfile_2_location</th>\\n\",\n       \"      <th>run_56_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_56_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_56_cloudfile_3_location</th>\\n\",\n       \"      <th>run_56_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_56_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_56_cloudfile_4_location</th>\\n\",\n       \"      <th>run_56_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_56_cluster_name</th>\\n\",\n       \"      <th>run_56_database_1</th>\\n\",\n       \"      <th>run_56_has_taxanalysis</th>\\n\",\n       \"      <th>run_56_is_public</th>\\n\",\n       \"      <th>run_56_load_done</th>\\n\",\n       \"      <th>run_56_published</th>\\n\",\n       \"      <th>run_56_size</th>\\n\",\n       \"      <th>run_56_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_56_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_56_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_56_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_56_srafile_1_cluster</th>\\n\",\n       \"      <th>run_56_srafile_1_date</th>\\n\",\n       \"      <th>run_56_srafile_1_filename</th>\\n\",\n       \"      <th>run_56_srafile_1_md5</th>\\n\",\n       \"      <th>run_56_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_56_srafile_1_size</th>\\n\",\n       \"      <th>run_56_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_56_srafile_1_supertype</th>\\n\",\n       \"      <th>run_56_srafile_1_version</th>\\n\",\n       \"      <th>run_56_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_56_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_56_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_56_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_56_srafile_2_cluster</th>\\n\",\n       \"      <th>run_56_srafile_2_date</th>\\n\",\n       \"      <th>run_56_srafile_2_filename</th>\\n\",\n       \"      <th>run_56_srafile_2_md5</th>\\n\",\n       \"      <th>run_56_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_56_srafile_2_size</th>\\n\",\n       \"      <th>run_56_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_56_srafile_2_supertype</th>\\n\",\n       \"      <th>run_56_srafile_2_url</th>\\n\",\n       \"      <th>run_56_srafile_2_version</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_56_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_56_srafile_3_cluster</th>\\n\",\n       \"      <th>run_56_srafile_3_date</th>\\n\",\n       \"      <th>run_56_srafile_3_filename</th>\\n\",\n       \"      <th>run_56_srafile_3_md5</th>\\n\",\n       \"      <th>run_56_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_56_srafile_3_size</th>\\n\",\n       \"      <th>run_56_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_56_srafile_3_supertype</th>\\n\",\n       \"      <th>run_56_srafile_3_url</th>\\n\",\n       \"      <th>run_56_srafile_3_version</th>\\n\",\n       \"      <th>run_56_static_data_available</th>\\n\",\n       \"      <th>run_56_total_base_count</th>\\n\",\n       \"      <th>run_56_total_base_cs_native</th>\\n\",\n       \"      <th>run_56_total_bases</th>\\n\",\n       \"      <th>run_56_total_spots</th>\\n\",\n       \"      <th>run_57_accession</th>\\n\",\n       \"      <th>run_57_alias</th>\\n\",\n       \"      <th>run_57_base_A_count</th>\\n\",\n       \"      <th>run_57_base_C_count</th>\\n\",\n       \"      <th>run_57_base_G_count</th>\\n\",\n       \"      <th>run_57_base_N_count</th>\\n\",\n       \"      <th>run_57_base_T_count</th>\\n\",\n       \"      <th>run_57_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_57_cloudfile_1_location</th>\\n\",\n       \"      <th>run_57_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_57_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_57_cloudfile_2_location</th>\\n\",\n       \"      <th>run_57_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_57_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_57_cloudfile_3_location</th>\\n\",\n       \"      <th>run_57_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_57_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_57_cloudfile_4_location</th>\\n\",\n       \"      <th>run_57_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_57_cluster_name</th>\\n\",\n       \"      <th>run_57_database_1</th>\\n\",\n       \"      <th>run_57_has_taxanalysis</th>\\n\",\n       \"      <th>run_57_is_public</th>\\n\",\n       \"      <th>run_57_load_done</th>\\n\",\n       \"      <th>run_57_published</th>\\n\",\n       \"      <th>run_57_size</th>\\n\",\n       \"      <th>run_57_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_57_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_57_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_57_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_57_srafile_1_cluster</th>\\n\",\n       \"      <th>run_57_srafile_1_date</th>\\n\",\n       \"      <th>run_57_srafile_1_filename</th>\\n\",\n       \"      <th>run_57_srafile_1_md5</th>\\n\",\n       \"      <th>run_57_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_57_srafile_1_size</th>\\n\",\n       \"      <th>run_57_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_57_srafile_1_supertype</th>\\n\",\n       \"      <th>run_57_srafile_1_version</th>\\n\",\n       \"      <th>run_57_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_57_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_57_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_57_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_57_srafile_2_cluster</th>\\n\",\n       \"      <th>run_57_srafile_2_date</th>\\n\",\n       \"      <th>run_57_srafile_2_filename</th>\\n\",\n       \"      <th>run_57_srafile_2_md5</th>\\n\",\n       \"      <th>run_57_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_57_srafile_2_size</th>\\n\",\n       \"      <th>run_57_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_57_srafile_2_supertype</th>\\n\",\n       \"      <th>run_57_srafile_2_url</th>\\n\",\n       \"      <th>run_57_srafile_2_version</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_57_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_57_srafile_3_cluster</th>\\n\",\n       \"      <th>run_57_srafile_3_date</th>\\n\",\n       \"      <th>run_57_srafile_3_filename</th>\\n\",\n       \"      <th>run_57_srafile_3_md5</th>\\n\",\n       \"      <th>run_57_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_57_srafile_3_size</th>\\n\",\n       \"      <th>run_57_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_57_srafile_3_supertype</th>\\n\",\n       \"      <th>run_57_srafile_3_url</th>\\n\",\n       \"      <th>run_57_srafile_3_version</th>\\n\",\n       \"      <th>run_57_static_data_available</th>\\n\",\n       \"      <th>run_57_total_base_count</th>\\n\",\n       \"      <th>run_57_total_base_cs_native</th>\\n\",\n       \"      <th>run_57_total_bases</th>\\n\",\n       \"      <th>run_57_total_spots</th>\\n\",\n       \"      <th>run_58_accession</th>\\n\",\n       \"      <th>run_58_alias</th>\\n\",\n       \"      <th>run_58_base_A_count</th>\\n\",\n       \"      <th>run_58_base_C_count</th>\\n\",\n       \"      <th>run_58_base_G_count</th>\\n\",\n       \"      <th>run_58_base_N_count</th>\\n\",\n       \"      <th>run_58_base_T_count</th>\\n\",\n       \"      <th>run_58_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_58_cloudfile_1_location</th>\\n\",\n       \"      <th>run_58_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_58_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_58_cloudfile_2_location</th>\\n\",\n       \"      <th>run_58_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_58_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_58_cloudfile_3_location</th>\\n\",\n       \"      <th>run_58_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_58_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_58_cloudfile_4_location</th>\\n\",\n       \"      <th>run_58_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_58_cluster_name</th>\\n\",\n       \"      <th>run_58_database_1</th>\\n\",\n       \"      <th>run_58_has_taxanalysis</th>\\n\",\n       \"      <th>run_58_is_public</th>\\n\",\n       \"      <th>run_58_load_done</th>\\n\",\n       \"      <th>run_58_published</th>\\n\",\n       \"      <th>run_58_size</th>\\n\",\n       \"      <th>run_58_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_58_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_58_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_58_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_58_srafile_1_cluster</th>\\n\",\n       \"      <th>run_58_srafile_1_date</th>\\n\",\n       \"      <th>run_58_srafile_1_filename</th>\\n\",\n       \"      <th>run_58_srafile_1_md5</th>\\n\",\n       \"      <th>run_58_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_58_srafile_1_size</th>\\n\",\n       \"      <th>run_58_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_58_srafile_1_supertype</th>\\n\",\n       \"      <th>run_58_srafile_1_version</th>\\n\",\n       \"      <th>run_58_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_58_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_58_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_58_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_58_srafile_2_cluster</th>\\n\",\n       \"      <th>run_58_srafile_2_date</th>\\n\",\n       \"      <th>run_58_srafile_2_filename</th>\\n\",\n       \"      <th>run_58_srafile_2_md5</th>\\n\",\n       \"      <th>run_58_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_58_srafile_2_size</th>\\n\",\n       \"      <th>run_58_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_58_srafile_2_supertype</th>\\n\",\n       \"      <th>run_58_srafile_2_url</th>\\n\",\n       \"      <th>run_58_srafile_2_version</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_58_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_58_srafile_3_cluster</th>\\n\",\n       \"      <th>run_58_srafile_3_date</th>\\n\",\n       \"      <th>run_58_srafile_3_filename</th>\\n\",\n       \"      <th>run_58_srafile_3_md5</th>\\n\",\n       \"      <th>run_58_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_58_srafile_3_size</th>\\n\",\n       \"      <th>run_58_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_58_srafile_3_supertype</th>\\n\",\n       \"      <th>run_58_srafile_3_url</th>\\n\",\n       \"      <th>run_58_srafile_3_version</th>\\n\",\n       \"      <th>run_58_static_data_available</th>\\n\",\n       \"      <th>run_58_total_base_count</th>\\n\",\n       \"      <th>run_58_total_base_cs_native</th>\\n\",\n       \"      <th>run_58_total_bases</th>\\n\",\n       \"      <th>run_58_total_spots</th>\\n\",\n       \"      <th>run_59_accession</th>\\n\",\n       \"      <th>run_59_alias</th>\\n\",\n       \"      <th>run_59_base_A_count</th>\\n\",\n       \"      <th>run_59_base_C_count</th>\\n\",\n       \"      <th>run_59_base_G_count</th>\\n\",\n       \"      <th>run_59_base_N_count</th>\\n\",\n       \"      <th>run_59_base_T_count</th>\\n\",\n       \"      <th>run_59_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_59_cloudfile_1_location</th>\\n\",\n       \"      <th>run_59_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_59_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_59_cloudfile_2_location</th>\\n\",\n       \"      <th>run_59_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_59_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_59_cloudfile_3_location</th>\\n\",\n       \"      <th>run_59_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_59_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_59_cloudfile_4_location</th>\\n\",\n       \"      <th>run_59_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_59_cluster_name</th>\\n\",\n       \"      <th>run_59_database_1</th>\\n\",\n       \"      <th>run_59_has_taxanalysis</th>\\n\",\n       \"      <th>run_59_is_public</th>\\n\",\n       \"      <th>run_59_load_done</th>\\n\",\n       \"      <th>run_59_published</th>\\n\",\n       \"      <th>run_59_size</th>\\n\",\n       \"      <th>run_59_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_59_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_59_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_59_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_59_srafile_1_cluster</th>\\n\",\n       \"      <th>run_59_srafile_1_date</th>\\n\",\n       \"      <th>run_59_srafile_1_filename</th>\\n\",\n       \"      <th>run_59_srafile_1_md5</th>\\n\",\n       \"      <th>run_59_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_59_srafile_1_size</th>\\n\",\n       \"      <th>run_59_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_59_srafile_1_supertype</th>\\n\",\n       \"      <th>run_59_srafile_1_version</th>\\n\",\n       \"      <th>run_59_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_59_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_59_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_59_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_59_srafile_2_cluster</th>\\n\",\n       \"      <th>run_59_srafile_2_date</th>\\n\",\n       \"      <th>run_59_srafile_2_filename</th>\\n\",\n       \"      <th>run_59_srafile_2_md5</th>\\n\",\n       \"      <th>run_59_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_59_srafile_2_size</th>\\n\",\n       \"      <th>run_59_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_59_srafile_2_supertype</th>\\n\",\n       \"      <th>run_59_srafile_2_url</th>\\n\",\n       \"      <th>run_59_srafile_2_version</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_59_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_59_srafile_3_cluster</th>\\n\",\n       \"      <th>run_59_srafile_3_date</th>\\n\",\n       \"      <th>run_59_srafile_3_filename</th>\\n\",\n       \"      <th>run_59_srafile_3_md5</th>\\n\",\n       \"      <th>run_59_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_59_srafile_3_size</th>\\n\",\n       \"      <th>run_59_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_59_srafile_3_supertype</th>\\n\",\n       \"      <th>run_59_srafile_3_url</th>\\n\",\n       \"      <th>run_59_srafile_3_version</th>\\n\",\n       \"      <th>run_59_static_data_available</th>\\n\",\n       \"      <th>run_59_total_base_count</th>\\n\",\n       \"      <th>run_59_total_base_cs_native</th>\\n\",\n       \"      <th>run_59_total_bases</th>\\n\",\n       \"      <th>run_59_total_spots</th>\\n\",\n       \"      <th>run_5_accession</th>\\n\",\n       \"      <th>run_5_alias</th>\\n\",\n       \"      <th>run_5_base_A_count</th>\\n\",\n       \"      <th>run_5_base_C_count</th>\\n\",\n       \"      <th>run_5_base_G_count</th>\\n\",\n       \"      <th>run_5_base_N_count</th>\\n\",\n       \"      <th>run_5_base_T_count</th>\\n\",\n       \"      <th>run_5_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_5_cloudfile_1_location</th>\\n\",\n       \"      <th>run_5_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_5_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_5_cloudfile_2_location</th>\\n\",\n       \"      <th>run_5_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_5_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_5_cloudfile_3_location</th>\\n\",\n       \"      <th>run_5_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_5_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_5_cloudfile_4_location</th>\\n\",\n       \"      <th>run_5_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_5_cluster_name</th>\\n\",\n       \"      <th>run_5_database_1</th>\\n\",\n       \"      <th>run_5_has_taxanalysis</th>\\n\",\n       \"      <th>run_5_is_public</th>\\n\",\n       \"      <th>run_5_load_done</th>\\n\",\n       \"      <th>run_5_published</th>\\n\",\n       \"      <th>run_5_size</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_5_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_5_srafile_1_cluster</th>\\n\",\n       \"      <th>run_5_srafile_1_date</th>\\n\",\n       \"      <th>run_5_srafile_1_filename</th>\\n\",\n       \"      <th>run_5_srafile_1_md5</th>\\n\",\n       \"      <th>run_5_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_1_size</th>\\n\",\n       \"      <th>run_5_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_1_supertype</th>\\n\",\n       \"      <th>run_5_srafile_1_url</th>\\n\",\n       \"      <th>run_5_srafile_1_version</th>\\n\",\n       \"      <th>run_5_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_2_cluster</th>\\n\",\n       \"      <th>run_5_srafile_2_date</th>\\n\",\n       \"      <th>run_5_srafile_2_filename</th>\\n\",\n       \"      <th>run_5_srafile_2_md5</th>\\n\",\n       \"      <th>run_5_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_2_size</th>\\n\",\n       \"      <th>run_5_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_2_supertype</th>\\n\",\n       \"      <th>run_5_srafile_2_url</th>\\n\",\n       \"      <th>run_5_srafile_2_version</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_5_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_5_srafile_3_cluster</th>\\n\",\n       \"      <th>run_5_srafile_3_date</th>\\n\",\n       \"      <th>run_5_srafile_3_filename</th>\\n\",\n       \"      <th>run_5_srafile_3_md5</th>\\n\",\n       \"      <th>run_5_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_3_size</th>\\n\",\n       \"      <th>run_5_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_3_supertype</th>\\n\",\n       \"      <th>run_5_srafile_3_url</th>\\n\",\n       \"      <th>run_5_srafile_3_version</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_5_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_5_srafile_4_cluster</th>\\n\",\n       \"      <th>run_5_srafile_4_date</th>\\n\",\n       \"      <th>run_5_srafile_4_filename</th>\\n\",\n       \"      <th>run_5_srafile_4_md5</th>\\n\",\n       \"      <th>run_5_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_4_size</th>\\n\",\n       \"      <th>run_5_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_4_supertype</th>\\n\",\n       \"      <th>run_5_srafile_4_url</th>\\n\",\n       \"      <th>run_5_srafile_4_version</th>\\n\",\n       \"      <th>run_5_srafile_5_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_5_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_5_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_5_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_5_cluster</th>\\n\",\n       \"      <th>run_5_srafile_5_date</th>\\n\",\n       \"      <th>run_5_srafile_5_filename</th>\\n\",\n       \"      <th>run_5_srafile_5_md5</th>\\n\",\n       \"      <th>run_5_srafile_5_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_5_size</th>\\n\",\n       \"      <th>run_5_srafile_5_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_5_supertype</th>\\n\",\n       \"      <th>run_5_srafile_5_url</th>\\n\",\n       \"      <th>run_5_srafile_5_version</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_1_access_type</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_1_org</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_1_url</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_2_access_type</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_2_org</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_2_url</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_3_access_type</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_3_org</th>\\n\",\n       \"      <th>run_5_srafile_6_alternative_3_url</th>\\n\",\n       \"      <th>run_5_srafile_6_cluster</th>\\n\",\n       \"      <th>run_5_srafile_6_date</th>\\n\",\n       \"      <th>run_5_srafile_6_filename</th>\\n\",\n       \"      <th>run_5_srafile_6_md5</th>\\n\",\n       \"      <th>run_5_srafile_6_semantic_name</th>\\n\",\n       \"      <th>run_5_srafile_6_size</th>\\n\",\n       \"      <th>run_5_srafile_6_sratoolkit</th>\\n\",\n       \"      <th>run_5_srafile_6_supertype</th>\\n\",\n       \"      <th>run_5_srafile_6_url</th>\\n\",\n       \"      <th>run_5_srafile_6_version</th>\\n\",\n       \"      <th>run_5_static_data_available</th>\\n\",\n       \"      <th>run_5_total_base_count</th>\\n\",\n       \"      <th>run_5_total_base_cs_native</th>\\n\",\n       \"      <th>run_5_total_bases</th>\\n\",\n       \"      <th>run_5_total_spots</th>\\n\",\n       \"      <th>run_60_accession</th>\\n\",\n       \"      <th>run_60_alias</th>\\n\",\n       \"      <th>run_60_base_A_count</th>\\n\",\n       \"      <th>run_60_base_C_count</th>\\n\",\n       \"      <th>run_60_base_G_count</th>\\n\",\n       \"      <th>run_60_base_N_count</th>\\n\",\n       \"      <th>run_60_base_T_count</th>\\n\",\n       \"      <th>run_60_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_60_cloudfile_1_location</th>\\n\",\n       \"      <th>run_60_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_60_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_60_cloudfile_2_location</th>\\n\",\n       \"      <th>run_60_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_60_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_60_cloudfile_3_location</th>\\n\",\n       \"      <th>run_60_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_60_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_60_cloudfile_4_location</th>\\n\",\n       \"      <th>run_60_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_60_cluster_name</th>\\n\",\n       \"      <th>run_60_database_1</th>\\n\",\n       \"      <th>run_60_has_taxanalysis</th>\\n\",\n       \"      <th>run_60_is_public</th>\\n\",\n       \"      <th>run_60_load_done</th>\\n\",\n       \"      <th>run_60_published</th>\\n\",\n       \"      <th>run_60_size</th>\\n\",\n       \"      <th>run_60_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_60_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_60_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_60_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_60_srafile_1_cluster</th>\\n\",\n       \"      <th>run_60_srafile_1_date</th>\\n\",\n       \"      <th>run_60_srafile_1_filename</th>\\n\",\n       \"      <th>run_60_srafile_1_md5</th>\\n\",\n       \"      <th>run_60_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_60_srafile_1_size</th>\\n\",\n       \"      <th>run_60_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_60_srafile_1_supertype</th>\\n\",\n       \"      <th>run_60_srafile_1_version</th>\\n\",\n       \"      <th>run_60_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_60_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_60_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_60_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_60_srafile_2_cluster</th>\\n\",\n       \"      <th>run_60_srafile_2_date</th>\\n\",\n       \"      <th>run_60_srafile_2_filename</th>\\n\",\n       \"      <th>run_60_srafile_2_md5</th>\\n\",\n       \"      <th>run_60_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_60_srafile_2_size</th>\\n\",\n       \"      <th>run_60_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_60_srafile_2_supertype</th>\\n\",\n       \"      <th>run_60_srafile_2_url</th>\\n\",\n       \"      <th>run_60_srafile_2_version</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_60_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_60_srafile_3_cluster</th>\\n\",\n       \"      <th>run_60_srafile_3_date</th>\\n\",\n       \"      <th>run_60_srafile_3_filename</th>\\n\",\n       \"      <th>run_60_srafile_3_md5</th>\\n\",\n       \"      <th>run_60_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_60_srafile_3_size</th>\\n\",\n       \"      <th>run_60_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_60_srafile_3_supertype</th>\\n\",\n       \"      <th>run_60_srafile_3_url</th>\\n\",\n       \"      <th>run_60_srafile_3_version</th>\\n\",\n       \"      <th>run_60_static_data_available</th>\\n\",\n       \"      <th>run_60_total_base_count</th>\\n\",\n       \"      <th>run_60_total_base_cs_native</th>\\n\",\n       \"      <th>run_60_total_bases</th>\\n\",\n       \"      <th>run_60_total_spots</th>\\n\",\n       \"      <th>run_6_accession</th>\\n\",\n       \"      <th>run_6_alias</th>\\n\",\n       \"      <th>run_6_base_A_count</th>\\n\",\n       \"      <th>run_6_base_C_count</th>\\n\",\n       \"      <th>run_6_base_G_count</th>\\n\",\n       \"      <th>run_6_base_N_count</th>\\n\",\n       \"      <th>run_6_base_T_count</th>\\n\",\n       \"      <th>run_6_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_6_cloudfile_1_location</th>\\n\",\n       \"      <th>run_6_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_6_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_6_cloudfile_2_location</th>\\n\",\n       \"      <th>run_6_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_6_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_6_cloudfile_3_location</th>\\n\",\n       \"      <th>run_6_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_6_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_6_cloudfile_4_location</th>\\n\",\n       \"      <th>run_6_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_6_cluster_name</th>\\n\",\n       \"      <th>run_6_database_1</th>\\n\",\n       \"      <th>run_6_has_taxanalysis</th>\\n\",\n       \"      <th>run_6_is_public</th>\\n\",\n       \"      <th>run_6_load_done</th>\\n\",\n       \"      <th>run_6_published</th>\\n\",\n       \"      <th>run_6_size</th>\\n\",\n       \"      <th>run_6_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_6_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_6_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_6_srafile_1_cluster</th>\\n\",\n       \"      <th>run_6_srafile_1_date</th>\\n\",\n       \"      <th>run_6_srafile_1_filename</th>\\n\",\n       \"      <th>run_6_srafile_1_md5</th>\\n\",\n       \"      <th>run_6_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_6_srafile_1_size</th>\\n\",\n       \"      <th>run_6_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_6_srafile_1_supertype</th>\\n\",\n       \"      <th>run_6_srafile_1_version</th>\\n\",\n       \"      <th>run_6_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_6_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_6_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_6_srafile_2_cluster</th>\\n\",\n       \"      <th>run_6_srafile_2_date</th>\\n\",\n       \"      <th>run_6_srafile_2_filename</th>\\n\",\n       \"      <th>run_6_srafile_2_md5</th>\\n\",\n       \"      <th>run_6_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_6_srafile_2_size</th>\\n\",\n       \"      <th>run_6_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_6_srafile_2_supertype</th>\\n\",\n       \"      <th>run_6_srafile_2_url</th>\\n\",\n       \"      <th>run_6_srafile_2_version</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_6_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_6_srafile_3_cluster</th>\\n\",\n       \"      <th>run_6_srafile_3_date</th>\\n\",\n       \"      <th>run_6_srafile_3_filename</th>\\n\",\n       \"      <th>run_6_srafile_3_md5</th>\\n\",\n       \"      <th>run_6_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_6_srafile_3_size</th>\\n\",\n       \"      <th>run_6_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_6_srafile_3_supertype</th>\\n\",\n       \"      <th>run_6_srafile_3_url</th>\\n\",\n       \"      <th>run_6_srafile_3_version</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_6_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_6_srafile_4_cluster</th>\\n\",\n       \"      <th>run_6_srafile_4_date</th>\\n\",\n       \"      <th>run_6_srafile_4_filename</th>\\n\",\n       \"      <th>run_6_srafile_4_md5</th>\\n\",\n       \"      <th>run_6_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_6_srafile_4_size</th>\\n\",\n       \"      <th>run_6_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_6_srafile_4_supertype</th>\\n\",\n       \"      <th>run_6_srafile_4_url</th>\\n\",\n       \"      <th>run_6_srafile_4_version</th>\\n\",\n       \"      <th>run_6_static_data_available</th>\\n\",\n       \"      <th>run_6_total_base_count</th>\\n\",\n       \"      <th>run_6_total_base_cs_native</th>\\n\",\n       \"      <th>run_6_total_bases</th>\\n\",\n       \"      <th>run_6_total_spots</th>\\n\",\n       \"      <th>run_7_accession</th>\\n\",\n       \"      <th>run_7_alias</th>\\n\",\n       \"      <th>run_7_base_A_count</th>\\n\",\n       \"      <th>run_7_base_C_count</th>\\n\",\n       \"      <th>run_7_base_G_count</th>\\n\",\n       \"      <th>run_7_base_N_count</th>\\n\",\n       \"      <th>run_7_base_T_count</th>\\n\",\n       \"      <th>run_7_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_7_cloudfile_1_location</th>\\n\",\n       \"      <th>run_7_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_7_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_7_cloudfile_2_location</th>\\n\",\n       \"      <th>run_7_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_7_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_7_cloudfile_3_location</th>\\n\",\n       \"      <th>run_7_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_7_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_7_cloudfile_4_location</th>\\n\",\n       \"      <th>run_7_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_7_cluster_name</th>\\n\",\n       \"      <th>run_7_database_1</th>\\n\",\n       \"      <th>run_7_has_taxanalysis</th>\\n\",\n       \"      <th>run_7_is_public</th>\\n\",\n       \"      <th>run_7_load_done</th>\\n\",\n       \"      <th>run_7_published</th>\\n\",\n       \"      <th>run_7_size</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_7_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_7_srafile_1_cluster</th>\\n\",\n       \"      <th>run_7_srafile_1_date</th>\\n\",\n       \"      <th>run_7_srafile_1_filename</th>\\n\",\n       \"      <th>run_7_srafile_1_md5</th>\\n\",\n       \"      <th>run_7_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_7_srafile_1_size</th>\\n\",\n       \"      <th>run_7_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_7_srafile_1_supertype</th>\\n\",\n       \"      <th>run_7_srafile_1_url</th>\\n\",\n       \"      <th>run_7_srafile_1_version</th>\\n\",\n       \"      <th>run_7_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_7_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_7_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_7_srafile_2_cluster</th>\\n\",\n       \"      <th>run_7_srafile_2_date</th>\\n\",\n       \"      <th>run_7_srafile_2_filename</th>\\n\",\n       \"      <th>run_7_srafile_2_md5</th>\\n\",\n       \"      <th>run_7_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_7_srafile_2_size</th>\\n\",\n       \"      <th>run_7_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_7_srafile_2_supertype</th>\\n\",\n       \"      <th>run_7_srafile_2_url</th>\\n\",\n       \"      <th>run_7_srafile_2_version</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_7_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_7_srafile_3_cluster</th>\\n\",\n       \"      <th>run_7_srafile_3_date</th>\\n\",\n       \"      <th>run_7_srafile_3_filename</th>\\n\",\n       \"      <th>run_7_srafile_3_md5</th>\\n\",\n       \"      <th>run_7_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_7_srafile_3_size</th>\\n\",\n       \"      <th>run_7_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_7_srafile_3_supertype</th>\\n\",\n       \"      <th>run_7_srafile_3_url</th>\\n\",\n       \"      <th>run_7_srafile_3_version</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_7_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_7_srafile_4_cluster</th>\\n\",\n       \"      <th>run_7_srafile_4_date</th>\\n\",\n       \"      <th>run_7_srafile_4_filename</th>\\n\",\n       \"      <th>run_7_srafile_4_md5</th>\\n\",\n       \"      <th>run_7_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_7_srafile_4_size</th>\\n\",\n       \"      <th>run_7_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_7_srafile_4_supertype</th>\\n\",\n       \"      <th>run_7_srafile_4_url</th>\\n\",\n       \"      <th>run_7_srafile_4_version</th>\\n\",\n       \"      <th>run_7_static_data_available</th>\\n\",\n       \"      <th>run_7_total_base_count</th>\\n\",\n       \"      <th>run_7_total_base_cs_native</th>\\n\",\n       \"      <th>run_7_total_bases</th>\\n\",\n       \"      <th>run_7_total_spots</th>\\n\",\n       \"      <th>run_8_accession</th>\\n\",\n       \"      <th>run_8_alias</th>\\n\",\n       \"      <th>run_8_base_A_count</th>\\n\",\n       \"      <th>run_8_base_C_count</th>\\n\",\n       \"      <th>run_8_base_G_count</th>\\n\",\n       \"      <th>run_8_base_N_count</th>\\n\",\n       \"      <th>run_8_base_T_count</th>\\n\",\n       \"      <th>run_8_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_8_cloudfile_1_location</th>\\n\",\n       \"      <th>run_8_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_8_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_8_cloudfile_2_location</th>\\n\",\n       \"      <th>run_8_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_8_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_8_cloudfile_3_location</th>\\n\",\n       \"      <th>run_8_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_8_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_8_cloudfile_4_location</th>\\n\",\n       \"      <th>run_8_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_8_cluster_name</th>\\n\",\n       \"      <th>run_8_database_1</th>\\n\",\n       \"      <th>run_8_has_taxanalysis</th>\\n\",\n       \"      <th>run_8_is_public</th>\\n\",\n       \"      <th>run_8_load_done</th>\\n\",\n       \"      <th>run_8_published</th>\\n\",\n       \"      <th>run_8_size</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_2_access_type</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_2_org</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_2_url</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_3_access_type</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_3_org</th>\\n\",\n       \"      <th>run_8_srafile_1_alternative_3_url</th>\\n\",\n       \"      <th>run_8_srafile_1_cluster</th>\\n\",\n       \"      <th>run_8_srafile_1_date</th>\\n\",\n       \"      <th>run_8_srafile_1_filename</th>\\n\",\n       \"      <th>run_8_srafile_1_md5</th>\\n\",\n       \"      <th>run_8_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_8_srafile_1_size</th>\\n\",\n       \"      <th>run_8_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_8_srafile_1_supertype</th>\\n\",\n       \"      <th>run_8_srafile_1_url</th>\\n\",\n       \"      <th>run_8_srafile_1_version</th>\\n\",\n       \"      <th>run_8_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_8_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_8_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_8_srafile_2_cluster</th>\\n\",\n       \"      <th>run_8_srafile_2_date</th>\\n\",\n       \"      <th>run_8_srafile_2_filename</th>\\n\",\n       \"      <th>run_8_srafile_2_md5</th>\\n\",\n       \"      <th>run_8_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_8_srafile_2_size</th>\\n\",\n       \"      <th>run_8_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_8_srafile_2_supertype</th>\\n\",\n       \"      <th>run_8_srafile_2_url</th>\\n\",\n       \"      <th>run_8_srafile_2_version</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_8_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_8_srafile_3_cluster</th>\\n\",\n       \"      <th>run_8_srafile_3_date</th>\\n\",\n       \"      <th>run_8_srafile_3_filename</th>\\n\",\n       \"      <th>run_8_srafile_3_md5</th>\\n\",\n       \"      <th>run_8_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_8_srafile_3_size</th>\\n\",\n       \"      <th>run_8_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_8_srafile_3_supertype</th>\\n\",\n       \"      <th>run_8_srafile_3_url</th>\\n\",\n       \"      <th>run_8_srafile_3_version</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_8_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_8_srafile_4_cluster</th>\\n\",\n       \"      <th>run_8_srafile_4_date</th>\\n\",\n       \"      <th>run_8_srafile_4_filename</th>\\n\",\n       \"      <th>run_8_srafile_4_md5</th>\\n\",\n       \"      <th>run_8_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_8_srafile_4_size</th>\\n\",\n       \"      <th>run_8_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_8_srafile_4_supertype</th>\\n\",\n       \"      <th>run_8_srafile_4_url</th>\\n\",\n       \"      <th>run_8_srafile_4_version</th>\\n\",\n       \"      <th>run_8_static_data_available</th>\\n\",\n       \"      <th>run_8_total_base_count</th>\\n\",\n       \"      <th>run_8_total_base_cs_native</th>\\n\",\n       \"      <th>run_8_total_bases</th>\\n\",\n       \"      <th>run_8_total_spots</th>\\n\",\n       \"      <th>run_9_accession</th>\\n\",\n       \"      <th>run_9_alias</th>\\n\",\n       \"      <th>run_9_base_A_count</th>\\n\",\n       \"      <th>run_9_base_C_count</th>\\n\",\n       \"      <th>run_9_base_G_count</th>\\n\",\n       \"      <th>run_9_base_N_count</th>\\n\",\n       \"      <th>run_9_base_T_count</th>\\n\",\n       \"      <th>run_9_cloudfile_1_filetype</th>\\n\",\n       \"      <th>run_9_cloudfile_1_location</th>\\n\",\n       \"      <th>run_9_cloudfile_1_provider</th>\\n\",\n       \"      <th>run_9_cloudfile_2_filetype</th>\\n\",\n       \"      <th>run_9_cloudfile_2_location</th>\\n\",\n       \"      <th>run_9_cloudfile_2_provider</th>\\n\",\n       \"      <th>run_9_cloudfile_3_filetype</th>\\n\",\n       \"      <th>run_9_cloudfile_3_location</th>\\n\",\n       \"      <th>run_9_cloudfile_3_provider</th>\\n\",\n       \"      <th>run_9_cloudfile_4_filetype</th>\\n\",\n       \"      <th>run_9_cloudfile_4_location</th>\\n\",\n       \"      <th>run_9_cloudfile_4_provider</th>\\n\",\n       \"      <th>run_9_cluster_name</th>\\n\",\n       \"      <th>run_9_database_1</th>\\n\",\n       \"      <th>run_9_has_taxanalysis</th>\\n\",\n       \"      <th>run_9_is_public</th>\\n\",\n       \"      <th>run_9_load_done</th>\\n\",\n       \"      <th>run_9_published</th>\\n\",\n       \"      <th>run_9_size</th>\\n\",\n       \"      <th>run_9_srafile_1_alternative_1_access_type</th>\\n\",\n       \"      <th>run_9_srafile_1_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_1_alternative_1_org</th>\\n\",\n       \"      <th>run_9_srafile_1_alternative_1_url</th>\\n\",\n       \"      <th>run_9_srafile_1_cluster</th>\\n\",\n       \"      <th>run_9_srafile_1_date</th>\\n\",\n       \"      <th>run_9_srafile_1_filename</th>\\n\",\n       \"      <th>run_9_srafile_1_md5</th>\\n\",\n       \"      <th>run_9_srafile_1_semantic_name</th>\\n\",\n       \"      <th>run_9_srafile_1_size</th>\\n\",\n       \"      <th>run_9_srafile_1_sratoolkit</th>\\n\",\n       \"      <th>run_9_srafile_1_supertype</th>\\n\",\n       \"      <th>run_9_srafile_1_version</th>\\n\",\n       \"      <th>run_9_srafile_2_alternative_1_access_type</th>\\n\",\n       \"      <th>run_9_srafile_2_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_2_alternative_1_org</th>\\n\",\n       \"      <th>run_9_srafile_2_alternative_1_url</th>\\n\",\n       \"      <th>run_9_srafile_2_cluster</th>\\n\",\n       \"      <th>run_9_srafile_2_date</th>\\n\",\n       \"      <th>run_9_srafile_2_filename</th>\\n\",\n       \"      <th>run_9_srafile_2_md5</th>\\n\",\n       \"      <th>run_9_srafile_2_semantic_name</th>\\n\",\n       \"      <th>run_9_srafile_2_size</th>\\n\",\n       \"      <th>run_9_srafile_2_sratoolkit</th>\\n\",\n       \"      <th>run_9_srafile_2_supertype</th>\\n\",\n       \"      <th>run_9_srafile_2_url</th>\\n\",\n       \"      <th>run_9_srafile_2_version</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_1_access_type</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_1_org</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_1_url</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_2_access_type</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_2_org</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_2_url</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_3_access_type</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_3_org</th>\\n\",\n       \"      <th>run_9_srafile_3_alternative_3_url</th>\\n\",\n       \"      <th>run_9_srafile_3_cluster</th>\\n\",\n       \"      <th>run_9_srafile_3_date</th>\\n\",\n       \"      <th>run_9_srafile_3_filename</th>\\n\",\n       \"      <th>run_9_srafile_3_md5</th>\\n\",\n       \"      <th>run_9_srafile_3_semantic_name</th>\\n\",\n       \"      <th>run_9_srafile_3_size</th>\\n\",\n       \"      <th>run_9_srafile_3_sratoolkit</th>\\n\",\n       \"      <th>run_9_srafile_3_supertype</th>\\n\",\n       \"      <th>run_9_srafile_3_url</th>\\n\",\n       \"      <th>run_9_srafile_3_version</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_1_access_type</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_1_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_1_org</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_1_url</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_2_access_type</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_2_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_2_org</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_2_url</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_3_access_type</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_3_free_egress</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_3_org</th>\\n\",\n       \"      <th>run_9_srafile_4_alternative_3_url</th>\\n\",\n       \"      <th>run_9_srafile_4_cluster</th>\\n\",\n       \"      <th>run_9_srafile_4_date</th>\\n\",\n       \"      <th>run_9_srafile_4_filename</th>\\n\",\n       \"      <th>run_9_srafile_4_md5</th>\\n\",\n       \"      <th>run_9_srafile_4_semantic_name</th>\\n\",\n       \"      <th>run_9_srafile_4_size</th>\\n\",\n       \"      <th>run_9_srafile_4_sratoolkit</th>\\n\",\n       \"      <th>run_9_srafile_4_supertype</th>\\n\",\n       \"      <th>run_9_srafile_4_url</th>\\n\",\n       \"      <th>run_9_srafile_4_version</th>\\n\",\n       \"      <th>run_9_static_data_available</th>\\n\",\n       \"      <th>run_9_total_base_count</th>\\n\",\n       \"      <th>run_9_total_base_cs_native</th>\\n\",\n       \"      <th>run_9_total_bases</th>\\n\",\n       \"      <th>run_9_total_spots</th>\\n\",\n       \"      <th>run_set_bases</th>\\n\",\n       \"      <th>run_set_bytes</th>\\n\",\n       \"      <th>run_set_runs</th>\\n\",\n       \"      <th>run_set_spots</th>\\n\",\n       \"      <th>sample_attributes_10_tag</th>\\n\",\n       \"      <th>sample_attributes_10_value</th>\\n\",\n       \"      <th>sample_attributes_11_tag</th>\\n\",\n       \"      <th>sample_attributes_11_value</th>\\n\",\n       \"      <th>sample_attributes_12_tag</th>\\n\",\n       \"      <th>sample_attributes_12_value</th>\\n\",\n       \"      <th>sample_attributes_1_tag</th>\\n\",\n       \"      <th>sample_attributes_1_value</th>\\n\",\n       \"      <th>sample_attributes_2_tag</th>\\n\",\n       \"      <th>sample_attributes_2_value</th>\\n\",\n       \"      <th>sample_attributes_3_tag</th>\\n\",\n       \"      <th>sample_attributes_3_value</th>\\n\",\n       \"      <th>sample_attributes_4_tag</th>\\n\",\n       \"      <th>sample_attributes_4_value</th>\\n\",\n       \"      <th>sample_attributes_5_tag</th>\\n\",\n       \"      <th>sample_attributes_5_value</th>\\n\",\n       \"      <th>sample_attributes_6_tag</th>\\n\",\n       \"      <th>sample_attributes_6_value</th>\\n\",\n       \"      <th>sample_attributes_7_tag</th>\\n\",\n       \"      <th>sample_attributes_7_value</th>\\n\",\n       \"      <th>sample_attributes_8_tag</th>\\n\",\n       \"      <th>sample_attributes_8_value</th>\\n\",\n       \"      <th>sample_attributes_9_tag</th>\\n\",\n       \"      <th>sample_attributes_9_value</th>\\n\",\n       \"      <th>sample_external_id_1</th>\\n\",\n       \"      <th>sample_external_id_1_namespace</th>\\n\",\n       \"      <th>sample_link_1_type</th>\\n\",\n       \"      <th>sample_link_1_value_1</th>\\n\",\n       \"      <th>sample_link_1_value_2</th>\\n\",\n       \"      <th>sample_link_1_value_3</th>\\n\",\n       \"      <th>sample_title</th>\\n\",\n       \"      <th>study_alias</th>\\n\",\n       \"      <th>study_attributes_1_tag</th>\\n\",\n       \"      <th>study_attributes_1_value</th>\\n\",\n       \"      <th>study_center_name</th>\\n\",\n       \"      <th>study_center_project_name</th>\\n\",\n       \"      <th>study_external_id_1</th>\\n\",\n       \"      <th>study_external_id_1_namespace</th>\\n\",\n       \"      <th>study_link_1_type</th>\\n\",\n       \"      <th>study_link_1_value_1</th>\\n\",\n       \"      <th>study_link_1_value_2</th>\\n\",\n       \"      <th>study_link_2_type</th>\\n\",\n       \"      <th>study_link_2_value_1</th>\\n\",\n       \"      <th>study_link_2_value_2</th>\\n\",\n       \"      <th>study_study_abstract</th>\\n\",\n       \"      <th>study_study_title</th>\\n\",\n       \"      <th>study_study_type_existing_study_type</th>\\n\",\n       \"      <th>submission_accession</th>\\n\",\n       \"      <th>submission_alias</th>\\n\",\n       \"      <th>submission_broker_name</th>\\n\",\n       \"      <th>submission_center_name</th>\\n\",\n       \"      <th>submission_lab_name</th>\\n\",\n       \"      <th>submission_submission_comment</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>SRX30198976</td>\\n\",\n       \"      <td>GSM9192063: Sublibrary 8; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC SINGLE CELL</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS26258712</td>\\n\",\n       \"      <td>GSM9192063</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>1166206042</td>\\n\",\n       \"      <td>66603478590</td>\\n\",\n       \"      <td>SRR35085617</td>\\n\",\n       \"      <td>1166206042</td>\\n\",\n       \"      <td>188925378804</td>\\n\",\n       \"      <td>GSM9192063_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192063</td>\\n\",\n       \"      <td>GSM9192063_r1</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...</td>\\n\",\n       \"      <td>GSM9192063</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS26258712</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN50743878</td>\\n\",\n       \"      <td>SRS26258712</td>\\n\",\n       \"      <td>188925378804</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>GSM9192063</td>\\n\",\n       \"      <td>Sublibrary 8</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       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<td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>188925378804</td>\\n\",\n       \"      <td>66603478590</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>1166206042</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>cell line</td>\\n\",\n       \"      <td>HepaRG</td>\\n\",\n       \"      <td>cell type</td>\\n\",\n       \"      <td>hepatocyte</td>\\n\",\n       \"      <td>batch</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>geo_loc_name</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>collection_date</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN50743878</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 1309017</td>\\n\",\n       \"      <td>LABEL: PRJNA1309017</td>\\n\",\n       \"      <td>Sublibrary 8</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>PRJNA1309017</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...</td>\\n\",\n       \"      <td>Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA2201062</td>\\n\",\n       \"      <td>SUB15557421</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>US EPA</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>SRX30198975</td>\\n\",\n       \"      <td>GSM9192062: Sublibrary 7; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC SINGLE CELL</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS26258711</td>\\n\",\n       \"      <td>GSM9192062</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>1190703742</td>\\n\",\n       \"      <td>68479328404</td>\\n\",\n       \"      <td>SRR35085618</td>\\n\",\n       \"      <td>1190703742</td>\\n\",\n       \"      <td>192894006204</td>\\n\",\n       \"      <td>GSM9192062_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192062</td>\\n\",\n       \"      <td>GSM9192062_r1</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...</td>\\n\",\n       \"      <td>GSM9192062</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS26258711</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN50743879</td>\\n\",\n       \"      <td>SRS26258711</td>\\n\",\n       \"      <td>192894006204</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>GSM9192062</td>\\n\",\n       \"      <td>Sublibrary 7</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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<td>GSM9192062_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>51542139467</td>\\n\",\n       \"      <td>44674032953</td>\\n\",\n       \"      <td>47161335680</td>\\n\",\n       \"      <td>33430713</td>\\n\",\n       \"      <td>49483067391</td>\\n\",\n       \"      <td>fastq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>gs.us-east1</td>\\n\",\n       \"      <td>gs</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>&lt;Database&gt;&lt;Table name=\\\"SEQUENCE\\\"&gt;&lt;Statistics source=\\\"meta\\\"&gt;&lt;Rows count=\\\"1190703742\\\" /&gt;&lt;Elements ...</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>2025-08-25 00:09:09</td>\\n\",\n       \"      <td>Use Cloud Data Delivery</td>\\n\",\n       \"      <td>-</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>s3://sra-pub-src-3/SRR35085618/NOVA0467.Sample7_20230216_161230.L001.1.fastq.gz.1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2025-08-22 07:40:16</td>\\n\",\n       \"      <td>NOVA0467.Sample7_20230216_161230.L001.1.fastq.gz</td>\\n\",\n       \"      <td>fa41995fba4040ee0e309350dc5d660a</td>\\n\",\n       \"      <td>fastq</td>\\n\",\n       \"      <td>48249250682</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>Original</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Use Cloud Data Delivery</td>\\n\",\n       \"      <td>-</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>s3://sra-pub-src-3/SRR35085618/NOVA0467.Sample7_20230216_161230.L001.2.fastq.gz.1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2025-08-22 07:38:23</td>\\n\",\n       \"      <td>NOVA0467.Sample7_20230216_161230.L001.2.fastq.gz</td>\\n\",\n       \"      <td>0a0b687894e62ca0ac02b5404c3de7cc</td>\\n\",\n       \"      <td>fastq</td>\\n\",\n       \"      <td>56224771836</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>Original</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>anonymous</td>\\n\",\n       \"      <td>worldwide</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085618/SRR35085618</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2025-08-22 07:52:28</td>\\n\",\n       \"      <td>SRR35085618</td>\\n\",\n       \"      <td>ea62d63ec7a19dc21cdb11fb0a5ec7fa</td>\\n\",\n       \"      <td>SRA Normalized</td>\\n\",\n       \"      <td>68479330627</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Primary ETL</td>\\n\",\n       \"      <td>https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085618/SRR35085618</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>anonymous</td>\\n\",\n       \"      <td>worldwide</td>\\n\",\n       \"      <td>NCBI</td>\\n\",\n       \"      <td>https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085618/SRR3508...</td>\\n\",\n       \"      <td>aws identity</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>s3://sra-pub-zq-4/SRR35085618/SRR35085618.lite.1</td>\\n\",\n       \"      <td>gcp identity</td>\\n\",\n       \"      <td>gs.us-east1</td>\\n\",\n       \"      <td>GCP</td>\\n\",\n       \"      <td>gs://sra-pub-zq-106/SRR35085618/SRR35085618.lite.1</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2025-08-22 08:58:57</td>\\n\",\n       \"      <td>SRR35085618.lite</td>\\n\",\n       \"      <td>99d6222f7b8a7e4d278b2c1bbaf43b2a</td>\\n\",\n       \"      <td>SRA Lite</td>\\n\",\n       \"      <td>49532678063</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Primary ETL</td>\\n\",\n       \"      <td>https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085618/SRR3508...</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>192894006204</td>\\n\",\n       \"      <td>68479328404</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>1190703742</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>cell line</td>\\n\",\n       \"      <td>HepaRG</td>\\n\",\n       \"      <td>cell type</td>\\n\",\n       \"      <td>hepatocyte</td>\\n\",\n       \"      <td>batch</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>geo_loc_name</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>collection_date</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN50743879</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 1309017</td>\\n\",\n       \"      <td>LABEL: PRJNA1309017</td>\\n\",\n       \"      <td>Sublibrary 7</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>PRJNA1309017</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...</td>\\n\",\n       \"      <td>Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA2201062</td>\\n\",\n       \"      <td>SUB15557421</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>US EPA</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>SRX30198974</td>\\n\",\n       \"      <td>GSM9192061: Sublibrary 6; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC SINGLE CELL</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS26258710</td>\\n\",\n       \"      <td>GSM9192061</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SRR35085619</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192061_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192061</td>\\n\",\n       \"      <td>GSM9192061_r1</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...</td>\\n\",\n       \"      <td>GSM9192061</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS26258710</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>cell line</td>\\n\",\n       \"      <td>HepaRG</td>\\n\",\n       \"      <td>cell type</td>\\n\",\n       \"      <td>hepatocyte</td>\\n\",\n       \"      <td>batch</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>geo_loc_name</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>collection_date</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN50743880</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 1309017</td>\\n\",\n       \"      <td>LABEL: PRJNA1309017</td>\\n\",\n       \"      <td>Sublibrary 6</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>PRJNA1309017</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...</td>\\n\",\n       \"      <td>Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA2201062</td>\\n\",\n       \"      <td>SUB15557421</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>US EPA</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>SRX30198973</td>\\n\",\n       \"      <td>GSM9192060: Sublibrary 5; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC SINGLE CELL</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS26258709</td>\\n\",\n       \"      <td>GSM9192060</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SRR35085620</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192060_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192060</td>\\n\",\n       \"      <td>GSM9192060_r1</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...</td>\\n\",\n       \"      <td>GSM9192060</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS26258709</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>cell line</td>\\n\",\n       \"      <td>HepaRG</td>\\n\",\n       \"      <td>cell type</td>\\n\",\n       \"      <td>hepatocyte</td>\\n\",\n       \"      <td>batch</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>geo_loc_name</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>collection_date</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN50743881</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 1309017</td>\\n\",\n       \"      <td>LABEL: PRJNA1309017</td>\\n\",\n       \"      <td>Sublibrary 5</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>PRJNA1309017</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...</td>\\n\",\n       \"      <td>Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA2201062</td>\\n\",\n       \"      <td>SUB15557421</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>US EPA</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>SRX30198972</td>\\n\",\n       \"      <td>GSM9192059: Sublibrary 4; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC SINGLE CELL</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS26258708</td>\\n\",\n       \"      <td>GSM9192059</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>1221995024</td>\\n\",\n       \"      <td>70518842810</td>\\n\",\n       \"      <td>SRR35085621</td>\\n\",\n       \"      <td>1221995024</td>\\n\",\n       \"      <td>197963193888</td>\\n\",\n       \"      <td>GSM9192059_r1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GSM9192059</td>\\n\",\n       \"      <td>GSM9192059_r1</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...</td>\\n\",\n       \"      <td>GSM9192059</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS26258708</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN50743882</td>\\n\",\n       \"      <td>SRS26258708</td>\\n\",\n       \"      <td>197963193888</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>GSM9192059</td>\\n\",\n       \"      <td>Sublibrary 4</td>\\n\",\n       \"      <td>9606</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>197963193888</td>\\n\",\n       \"      <td>70518842810</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>1221995024</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>liver</td>\\n\",\n       \"      <td>cell line</td>\\n\",\n       \"      <td>HepaRG</td>\\n\",\n       \"      <td>cell type</td>\\n\",\n       \"      <td>hepatocyte</td>\\n\",\n       \"      <td>batch</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>geo_loc_name</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>collection_date</td>\\n\",\n       \"      <td>missing</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN50743882</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 1309017</td>\\n\",\n       \"      <td>LABEL: PRJNA1309017</td>\\n\",\n       \"      <td>Sublibrary 4</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>PRJNA1309017</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...</td>\\n\",\n       \"      <td>Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]</td>\\n\",\n       \"      <td>Transcriptome Analysis</td>\\n\",\n       \"      <td>SRA2201062</td>\\n\",\n       \"      <td>SUB15557421</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>US EPA</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      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      \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      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      \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>495</th>\\n\",\n       \"      <td>SRP336717</td>\\n\",\n       \"      <td>SRX12150014</td>\\n\",\n       \"      <td>GSM5575098: db/db day 5 wound skin sodium butyrate replicate 1; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS10129301</td>\\n\",\n       \"      <td>GSM5575098</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>67443792</td>\\n\",\n       \"      <td>4391584473</td>\\n\",\n       \"      <td>SRR15858828</td>\\n\",\n       \"      <td>67443792</td>\\n\",\n       \"      <td>13178772204</td>\\n\",\n       \"      <td>GSM5575098</td>\\n\",\n       \"      <td>GEO Accession</td>\\n\",\n       \"      <td>GSM5575098</td>\\n\",\n       \"      <td>GSM5575098</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: gds</td>\\n\",\n       \"      <td>ID: 305575098</td>\\n\",\n       \"      <td>LABEL: GSM5575098</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS10129301</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN21397775</td>\\n\",\n       \"      <td>SRS10129301</td>\\n\",\n       \"      <td>13178772204</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>GSM5575098</td>\\n\",\n       \"      <td>db/db day 5 wound skin sodium butyrate replicate 1</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"    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<td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>13178772204</td>\\n\",\n       \"      <td>4391584473</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>67443792</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>strain</td>\\n\",\n       \"      <td>C57BL/6</td>\\n\",\n       \"      <td>genotype</td>\\n\",\n       \"      <td>db/db</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN21397775</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 762540</td>\\n\",\n       \"      <td>LABEL: PRJNA762540</td>\\n\",\n       \"      <td>db/db day 5 wound skin sodium butyrate replicate 1</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>PRJNA762540</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...</td>\\n\",\n       \"      <td>Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1293148</td>\\n\",\n       \"      <td>GEO: GSE183965</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>submission brokered by GEO</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>496</th>\\n\",\n       \"      <td>SRP336717</td>\\n\",\n       \"      <td>SRX12150013</td>\\n\",\n       \"      <td>GSM5575097: db/db day 5 wound skin vehicle replicate 5; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS10129302</td>\\n\",\n       \"      <td>GSM5575097</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>54395336</td>\\n\",\n       \"      <td>3661511279</td>\\n\",\n       \"      <td>SRR15858827</td>\\n\",\n       \"      <td>54395336</td>\\n\",\n       \"      <td>10690654836</td>\\n\",\n       \"      <td>GSM5575097</td>\\n\",\n       \"      <td>GEO Accession</td>\\n\",\n       \"      <td>GSM5575097</td>\\n\",\n       \"      <td>GSM5575097</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: gds</td>\\n\",\n       \"      <td>ID: 305575097</td>\\n\",\n       \"      <td>LABEL: GSM5575097</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS10129302</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN21397774</td>\\n\",\n       \"      <td>SRS10129302</td>\\n\",\n       \"      <td>10690654836</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>GSM5575097</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 5</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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<td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>10690654836</td>\\n\",\n       \"      <td>3661511279</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>54395336</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>strain</td>\\n\",\n       \"      <td>C57BL/6</td>\\n\",\n       \"      <td>genotype</td>\\n\",\n       \"      <td>db/db</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN21397774</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 762540</td>\\n\",\n       \"      <td>LABEL: PRJNA762540</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 5</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>PRJNA762540</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...</td>\\n\",\n       \"      <td>Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1293148</td>\\n\",\n       \"      <td>GEO: GSE183965</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>submission brokered by GEO</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>497</th>\\n\",\n       \"      <td>SRP336717</td>\\n\",\n       \"      <td>SRX12150012</td>\\n\",\n       \"      <td>GSM5575096: db/db day 5 wound skin vehicle replicate 4; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS10129300</td>\\n\",\n       \"      <td>GSM5575096</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>62043721</td>\\n\",\n       \"      <td>4091462023</td>\\n\",\n       \"      <td>SRR15858826</td>\\n\",\n       \"      <td>62043721</td>\\n\",\n       \"      <td>12241438327</td>\\n\",\n       \"      <td>GSM5575096</td>\\n\",\n       \"      <td>GEO Accession</td>\\n\",\n       \"      <td>GSM5575096</td>\\n\",\n       \"      <td>GSM5575096</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: gds</td>\\n\",\n       \"      <td>ID: 305575096</td>\\n\",\n       \"      <td>LABEL: GSM5575096</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS10129300</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN21397773</td>\\n\",\n       \"      <td>SRS10129300</td>\\n\",\n       \"      <td>12241438327</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>GSM5575096</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 4</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>fastq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>gs.us-east1</td>\\n\",\n       \"      <td>gs</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>&lt;Database&gt;&lt;Table name=\\\"SEQUENCE\\\"&gt;&lt;Statistics source=\\\"meta\\\"&gt;&lt;Rows count=\\\"62043721\\\" /&gt;&lt;Elements co...</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>2021-09-16 11:09:10</td>\\n\",\n       \"      <td>Use Cloud Data Delivery</td>\\n\",\n       \"      <td>-</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>12241438327</td>\\n\",\n       \"      <td>4091462023</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>62043721</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>strain</td>\\n\",\n       \"      <td>C57BL/6</td>\\n\",\n       \"      <td>genotype</td>\\n\",\n       \"      <td>db/db</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN21397773</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 762540</td>\\n\",\n       \"      <td>LABEL: PRJNA762540</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 4</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>PRJNA762540</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...</td>\\n\",\n       \"      <td>Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1293148</td>\\n\",\n       \"      <td>GEO: GSE183965</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>submission brokered by GEO</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>498</th>\\n\",\n       \"      <td>SRP336717</td>\\n\",\n       \"      <td>SRX12150011</td>\\n\",\n       \"      <td>GSM5575095: db/db day 5 wound skin vehicle replicate 3; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS10129299</td>\\n\",\n       \"      <td>GSM5575095</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>65966410</td>\\n\",\n       \"      <td>4388118727</td>\\n\",\n       \"      <td>SRR15858825</td>\\n\",\n       \"      <td>65966410</td>\\n\",\n       \"      <td>12918706392</td>\\n\",\n       \"      <td>GSM5575095</td>\\n\",\n       \"      <td>GEO Accession</td>\\n\",\n       \"      <td>GSM5575095</td>\\n\",\n       \"      <td>GSM5575095</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: gds</td>\\n\",\n       \"      <td>ID: 305575095</td>\\n\",\n       \"      <td>LABEL: GSM5575095</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS10129299</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN21397772</td>\\n\",\n       \"      <td>SRS10129299</td>\\n\",\n       \"      <td>12918706392</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>GSM5575095</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 3</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>12918706392</td>\\n\",\n       \"      <td>4388118727</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>65966410</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>strain</td>\\n\",\n       \"      <td>C57BL/6</td>\\n\",\n       \"      <td>genotype</td>\\n\",\n       \"      <td>db/db</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN21397772</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 762540</td>\\n\",\n       \"      <td>LABEL: PRJNA762540</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 3</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>PRJNA762540</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...</td>\\n\",\n       \"      <td>Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1293148</td>\\n\",\n       \"      <td>GEO: GSE183965</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>submission brokered by GEO</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>499</th>\\n\",\n       \"      <td>SRP336717</td>\\n\",\n       \"      <td>SRX12150010</td>\\n\",\n       \"      <td>GSM5575094: db/db day 5 wound skin vehicle replicate 2; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>TRANSCRIPTOMIC</td>\\n\",\n       \"      <td>cDNA</td>\\n\",\n       \"      <td>SRS10129298</td>\\n\",\n       \"      <td>GSM5575094</td>\\n\",\n       \"      <td>Illumina NovaSeq 6000</td>\\n\",\n       \"      <td>65557755</td>\\n\",\n       \"      <td>4549420217</td>\\n\",\n       \"      <td>SRR15858824</td>\\n\",\n       \"      <td>65557755</td>\\n\",\n       \"      <td>13000066097</td>\\n\",\n       \"      <td>GSM5575094</td>\\n\",\n       \"      <td>GEO Accession</td>\\n\",\n       \"      <td>GSM5575094</td>\\n\",\n       \"      <td>GSM5575094</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: gds</td>\\n\",\n       \"      <td>ID: 305575094</td>\\n\",\n       \"      <td>LABEL: GSM5575094</td>\\n\",\n       \"      <td>ILLUMINA</td>\\n\",\n       \"      <td>SRS10129298</td>\\n\",\n       \"      <td>PAIRED</td>\\n\",\n       \"      <td>SAMN21397771</td>\\n\",\n       \"      <td>SRS10129298</td>\\n\",\n       \"      <td>13000066097</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>GSM5575094</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 2</td>\\n\",\n       \"      <td>10090</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      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\"      <td>fastq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>gs.us-east1</td>\\n\",\n       \"      <td>gs</td>\\n\",\n       \"      <td>run.zq</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>s3</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>&lt;Database&gt;&lt;Table name=\\\"SEQUENCE\\\"&gt;&lt;Statistics source=\\\"meta\\\"&gt;&lt;Rows count=\\\"65557755\\\" /&gt;&lt;Elements co...</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>true</td>\\n\",\n       \"      <td>2021-09-16 11:09:10</td>\\n\",\n       \"      <td>Use Cloud Data Delivery</td>\\n\",\n       \"      <td>-</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      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<td>s3://sra-pub-src-3/SRR15858824/12-D5-V2_S12_ME_R2.fastq.gz.1</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2021-09-12 15:15:45</td>\\n\",\n       \"      <td>12-D5-V2_S12_ME_R2.fastq.gz</td>\\n\",\n       \"      <td>6b6f7202542efee92786887cd92fc5d5</td>\\n\",\n       \"      <td>fastq</td>\\n\",\n       \"      <td>3456393183</td>\\n\",\n       \"      <td>0</td>\\n\",\n       \"      <td>Original</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>anonymous</td>\\n\",\n       \"      <td>worldwide</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858824/SRR15858824</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2021-09-12 15:16:26</td>\\n\",\n       \"      <td>SRR15858824</td>\\n\",\n       \"      <td>4a9ca8f3194df802c4e366329fb77136</td>\\n\",\n       \"      <td>SRA Normalized</td>\\n\",\n       \"      <td>4549423018</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Primary ETL</td>\\n\",\n       \"      <td>https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858824/SRR15858824</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>anonymous</td>\\n\",\n       \"      <td>worldwide</td>\\n\",\n       \"      <td>NCBI</td>\\n\",\n       \"      <td>https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR015/15858/SRR15858824/SRR158...</td>\\n\",\n       \"      <td>aws identity</td>\\n\",\n       \"      <td>s3.us-east-1</td>\\n\",\n       \"      <td>AWS</td>\\n\",\n       \"      <td>s3://sra-pub-zq-8/SRR15858824/SRR15858824.lite.1</td>\\n\",\n       \"      <td>gcp identity</td>\\n\",\n       \"      <td>gs.us-east1</td>\\n\",\n       \"      <td>GCP</td>\\n\",\n       \"      <td>gs://sra-pub-zq-101/SRR15858824/SRR15858824.lite.1</td>\\n\",\n       \"      <td>public</td>\\n\",\n       \"      <td>2022-08-05 06:04:24</td>\\n\",\n       \"      <td>SRR15858824.lite</td>\\n\",\n       \"      <td>43410aa709730d43955051935f830508</td>\\n\",\n       \"      <td>SRA Lite</td>\\n\",\n       \"      <td>3456931570</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Primary ETL</td>\\n\",\n       \"      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\"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>13000066097</td>\\n\",\n       \"      <td>4549420217</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>65557755</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>source_name</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>strain</td>\\n\",\n       \"      <td>C57BL/6</td>\\n\",\n       \"      <td>genotype</td>\\n\",\n       \"      <td>db/db</td>\\n\",\n       \"      <td>tissue</td>\\n\",\n       \"      <td>total skin</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>SAMN21397771</td>\\n\",\n       \"      <td>BioSample</td>\\n\",\n       \"      <td>XREF_LINK</td>\\n\",\n       \"      <td>DB: bioproject</td>\\n\",\n       \"      <td>ID: 762540</td>\\n\",\n       \"      <td>LABEL: PRJNA762540</td>\\n\",\n       \"      <td>db/db day 5 wound skin vehicle replicate 2</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GSE183965</td>\\n\",\n       \"      <td>PRJNA762540</td>\\n\",\n       \"      <td>BioProject</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...</td>\\n\",\n       \"      <td>Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds</td>\\n\",\n       \"      <td>Other</td>\\n\",\n       \"      <td>SRA1293148</td>\\n\",\n       \"      <td>GEO: GSE183965</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>GEO</td>\\n\",\n       \"      <td>&lt;NA&gt;</td>\\n\",\n       \"      <td>submission brokered by GEO</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>500 rows × 5888 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"    study_accession experiment_accession  \\\\\\n\",\n       \"0         SRP610621          SRX30198976   \\n\",\n       \"1         SRP610621          SRX30198975   \\n\",\n       \"2         SRP610621          SRX30198974   \\n\",\n       \"3         SRP610621          SRX30198973   \\n\",\n       \"4         SRP610621          SRX30198972   \\n\",\n       \"..              ...                  ...   \\n\",\n       \"495       SRP336717          SRX12150014   \\n\",\n       \"496       SRP336717          SRX12150013   \\n\",\n       \"497       SRP336717          SRX12150012   \\n\",\n       \"498       SRP336717          SRX12150011   \\n\",\n       \"499       SRP336717          SRX12150010   \\n\",\n       \"\\n\",\n       \"                                                                          experiment_title  \\\\\\n\",\n       \"0                                          GSM9192063: Sublibrary 8; Homo sapiens; RNA-Seq   \\n\",\n       \"1                                          GSM9192062: Sublibrary 7; Homo sapiens; RNA-Seq   \\n\",\n       \"2                                          GSM9192061: Sublibrary 6; Homo sapiens; RNA-Seq   \\n\",\n       \"3                                          GSM9192060: Sublibrary 5; Homo sapiens; RNA-Seq   \\n\",\n       \"4                                          GSM9192059: Sublibrary 4; Homo sapiens; RNA-Seq   \\n\",\n       \"..                                                                                     ...   \\n\",\n       \"495  GSM5575098: db/db day 5 wound skin sodium butyrate replicate 1; Mus musculus; RNA-Seq   \\n\",\n       \"496          GSM5575097: db/db day 5 wound skin vehicle replicate 5; Mus musculus; RNA-Seq   \\n\",\n       \"497          GSM5575096: db/db day 5 wound skin vehicle replicate 4; Mus musculus; RNA-Seq   \\n\",\n       \"498          GSM5575095: db/db day 5 wound skin vehicle replicate 3; Mus musculus; RNA-Seq   \\n\",\n       \"499          GSM5575094: db/db day 5 wound skin vehicle replicate 2; Mus musculus; RNA-Seq   \\n\",\n       \"\\n\",\n       \"    sample_taxon_id sample_scientific_name experiment_library_strategy  \\\\\\n\",\n       \"0              9606           Homo sapiens                     RNA-Seq   \\n\",\n       \"1              9606           Homo sapiens                     RNA-Seq   \\n\",\n       \"2              9606           Homo sapiens                     RNA-Seq   \\n\",\n       \"3              9606           Homo sapiens                     RNA-Seq   \\n\",\n       \"4              9606           Homo sapiens                     RNA-Seq   \\n\",\n       \"..              ...                    ...                         ...   \\n\",\n       \"495           10090           Mus musculus                     RNA-Seq   \\n\",\n       \"496           10090           Mus musculus                     RNA-Seq   \\n\",\n       \"497           10090           Mus musculus                     RNA-Seq   \\n\",\n       \"498           10090           Mus musculus                     RNA-Seq   \\n\",\n       \"499           10090           Mus musculus                     RNA-Seq   \\n\",\n       \"\\n\",\n       \"      experiment_library_source experiment_library_selection sample_accession  \\\\\\n\",\n       \"0    TRANSCRIPTOMIC SINGLE CELL                         cDNA      SRS26258712   \\n\",\n       \"1    TRANSCRIPTOMIC SINGLE CELL                         cDNA      SRS26258711   \\n\",\n       \"2    TRANSCRIPTOMIC SINGLE CELL                         cDNA      SRS26258710   \\n\",\n       \"3    TRANSCRIPTOMIC SINGLE CELL                         cDNA      SRS26258709   \\n\",\n       \"4    TRANSCRIPTOMIC SINGLE CELL                         cDNA      SRS26258708   \\n\",\n       \"..                          ...                          ...              ...   \\n\",\n       \"495              TRANSCRIPTOMIC                         cDNA      SRS10129301   \\n\",\n       \"496              TRANSCRIPTOMIC                         cDNA      SRS10129302   \\n\",\n       \"497              TRANSCRIPTOMIC                         cDNA      SRS10129300   \\n\",\n       \"498              TRANSCRIPTOMIC                         cDNA      SRS10129299   \\n\",\n       \"499              TRANSCRIPTOMIC                         cDNA      SRS10129298   \\n\",\n       \"\\n\",\n       \"    sample_alias experiment_instrument_model pool_member_spots   run_1_size  \\\\\\n\",\n       \"0     GSM9192063       Illumina NovaSeq 6000        1166206042  66603478590   \\n\",\n       \"1     GSM9192062       Illumina NovaSeq 6000        1190703742  68479328404   \\n\",\n       \"2     GSM9192061       Illumina NovaSeq 6000              <NA>         <NA>   \\n\",\n       \"3     GSM9192060       Illumina NovaSeq 6000              <NA>         <NA>   \\n\",\n       \"4     GSM9192059       Illumina NovaSeq 6000        1221995024  70518842810   \\n\",\n       \"..           ...                         ...               ...          ...   \\n\",\n       \"495   GSM5575098       Illumina NovaSeq 6000          67443792   4391584473   \\n\",\n       \"496   GSM5575097       Illumina NovaSeq 6000          54395336   3661511279   \\n\",\n       \"497   GSM5575096       Illumina NovaSeq 6000          62043721   4091462023   \\n\",\n       \"498   GSM5575095       Illumina NovaSeq 6000          65966410   4388118727   \\n\",\n       \"499   GSM5575094       Illumina NovaSeq 6000          65557755   4549420217   \\n\",\n       \"\\n\",\n       \"    run_1_accession run_1_total_spots run_1_total_bases experiment_alias  \\\\\\n\",\n       \"0       SRR35085617        1166206042      188925378804    GSM9192063_r1   \\n\",\n       \"1       SRR35085618        1190703742      192894006204    GSM9192062_r1   \\n\",\n       \"2       SRR35085619              <NA>              <NA>    GSM9192061_r1   \\n\",\n       \"3       SRR35085620              <NA>              <NA>    GSM9192060_r1   \\n\",\n       \"4       SRR35085621        1221995024      197963193888    GSM9192059_r1   \\n\",\n       \"..              ...               ...               ...              ...   \\n\",\n       \"495     SRR15858828          67443792       13178772204       GSM5575098   \\n\",\n       \"496     SRR15858827          54395336       10690654836       GSM5575097   \\n\",\n       \"497     SRR15858826          62043721       12241438327       GSM5575096   \\n\",\n       \"498     SRR15858825          65966410       12918706392       GSM5575095   \\n\",\n       \"499     SRR15858824          65557755       13000066097       GSM5575094   \\n\",\n       \"\\n\",\n       \"    experiment_attributes_1_tag experiment_attributes_1_value  \\\\\\n\",\n       \"0                          <NA>                          <NA>   \\n\",\n       \"1                          <NA>                          <NA>   \\n\",\n       \"2                          <NA>                          <NA>   \\n\",\n       \"3                          <NA>                          <NA>   \\n\",\n       \"4                          <NA>                          <NA>   \\n\",\n       \"..                          ...                           ...   \\n\",\n       \"495               GEO Accession                    GSM5575098   \\n\",\n       \"496               GEO Accession                    GSM5575097   \\n\",\n       \"497               GEO Accession                    GSM5575096   \\n\",\n       \"498               GEO Accession                    GSM5575095   \\n\",\n       \"499               GEO Accession                    GSM5575094   \\n\",\n       \"\\n\",\n       \"    experiment_external_id experiment_external_id_1  \\\\\\n\",\n       \"0               GSM9192063            GSM9192063_r1   \\n\",\n       \"1               GSM9192062            GSM9192062_r1   \\n\",\n       \"2               GSM9192061            GSM9192061_r1   \\n\",\n       \"3               GSM9192060            GSM9192060_r1   \\n\",\n       \"4               GSM9192059            GSM9192059_r1   \\n\",\n       \"..                     ...                      ...   \\n\",\n       \"495             GSM5575098                     <NA>   \\n\",\n       \"496             GSM5575097                     <NA>   \\n\",\n       \"497             GSM5575096                     <NA>   \\n\",\n       \"498             GSM5575095                     <NA>   \\n\",\n       \"499             GSM5575094                     <NA>   \\n\",\n       \"\\n\",\n       \"    experiment_external_id_1_namespace  \\\\\\n\",\n       \"0                                  GEO   \\n\",\n       \"1                                  GEO   \\n\",\n       \"2                                  GEO   \\n\",\n       \"3                                  GEO   \\n\",\n       \"4                                  GEO   \\n\",\n       \"..                                 ...   \\n\",\n       \"495                               <NA>   \\n\",\n       \"496                               <NA>   \\n\",\n       \"497                               <NA>   \\n\",\n       \"498                               <NA>   \\n\",\n       \"499                               <NA>   \\n\",\n       \"\\n\",\n       \"                                                                experiment_library_construction_protocol  \\\\\\n\",\n       \"0    Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...   \\n\",\n       \"1    Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...   \\n\",\n       \"2    Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...   \\n\",\n       \"3    Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...   \\n\",\n       \"4    Following treatment, cells were dissociated into a single cell suspension, cell counts and viabi...   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495  Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...   \\n\",\n       \"496  Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...   \\n\",\n       \"497  Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...   \\n\",\n       \"498  Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...   \\n\",\n       \"499  Total RNA from skin and macrophages was isolated using Rneasy kit (Qiagen) rRNA removal was perf...   \\n\",\n       \"\\n\",\n       \"    experiment_library_name experiment_link_1_type experiment_link_1_value_1  \\\\\\n\",\n       \"0                GSM9192063                   <NA>                      <NA>   \\n\",\n       \"1                GSM9192062                   <NA>                      <NA>   \\n\",\n       \"2                GSM9192061                   <NA>                      <NA>   \\n\",\n       \"3                GSM9192060                   <NA>                      <NA>   \\n\",\n       \"4                GSM9192059                   <NA>                      <NA>   \\n\",\n       \"..                      ...                    ...                       ...   \\n\",\n       \"495                    <NA>              XREF_LINK                   DB: gds   \\n\",\n       \"496                    <NA>              XREF_LINK                   DB: gds   \\n\",\n       \"497                    <NA>              XREF_LINK                   DB: gds   \\n\",\n       \"498                    <NA>              XREF_LINK                   DB: gds   \\n\",\n       \"499                    <NA>              XREF_LINK                   DB: gds   \\n\",\n       \"\\n\",\n       \"    experiment_link_1_value_2 experiment_link_1_value_3 experiment_platform  \\\\\\n\",\n       \"0                        <NA>                      <NA>            ILLUMINA   \\n\",\n       \"1                        <NA>                      <NA>            ILLUMINA   \\n\",\n       \"2                        <NA>                      <NA>            ILLUMINA   \\n\",\n       \"3                        <NA>                      <NA>            ILLUMINA   \\n\",\n       \"4                        <NA>                      <NA>            ILLUMINA   \\n\",\n       \"..                        ...                       ...                 ...   \\n\",\n       \"495             ID: 305575098         LABEL: GSM5575098            ILLUMINA   \\n\",\n       \"496             ID: 305575097         LABEL: GSM5575097            ILLUMINA   \\n\",\n       \"497             ID: 305575096         LABEL: GSM5575096            ILLUMINA   \\n\",\n       \"498             ID: 305575095         LABEL: GSM5575095            ILLUMINA   \\n\",\n       \"499             ID: 305575094         LABEL: GSM5575094            ILLUMINA   \\n\",\n       \"\\n\",\n       \"    experiment_sample_descriptor_accession library_layout pool_external_id  \\\\\\n\",\n       \"0                              SRS26258712         PAIRED     SAMN50743878   \\n\",\n       \"1                              SRS26258711         PAIRED     SAMN50743879   \\n\",\n       \"2                              SRS26258710         PAIRED             <NA>   \\n\",\n       \"3                              SRS26258709         PAIRED             <NA>   \\n\",\n       \"4                              SRS26258708         PAIRED     SAMN50743882   \\n\",\n       \"..                                     ...            ...              ...   \\n\",\n       \"495                            SRS10129301         PAIRED     SAMN21397775   \\n\",\n       \"496                            SRS10129302         PAIRED     SAMN21397774   \\n\",\n       \"497                            SRS10129300         PAIRED     SAMN21397773   \\n\",\n       \"498                            SRS10129299         PAIRED     SAMN21397772   \\n\",\n       \"499                            SRS10129298         PAIRED     SAMN21397771   \\n\",\n       \"\\n\",\n       \"    pool_member_accession pool_member_bases pool_member_member_name  \\\\\\n\",\n       \"0             SRS26258712      188925378804                    <NA>   \\n\",\n       \"1             SRS26258711      192894006204                    <NA>   \\n\",\n       \"2                    <NA>              <NA>                    <NA>   \\n\",\n       \"3                    <NA>              <NA>                    <NA>   \\n\",\n       \"4             SRS26258708      197963193888                    <NA>   \\n\",\n       \"..                    ...               ...                     ...   \\n\",\n       \"495           SRS10129301       13178772204                    <NA>   \\n\",\n       \"496           SRS10129302       10690654836                    <NA>   \\n\",\n       \"497           SRS10129300       12241438327                    <NA>   \\n\",\n       \"498           SRS10129299       12918706392                    <NA>   \\n\",\n       \"499           SRS10129298       13000066097                    <NA>   \\n\",\n       \"\\n\",\n       \"    pool_member_organism pool_member_sample_name  \\\\\\n\",\n       \"0           Homo sapiens              GSM9192063   \\n\",\n       \"1           Homo sapiens              GSM9192062   \\n\",\n       \"2                   <NA>                    <NA>   \\n\",\n       \"3                   <NA>                    <NA>   \\n\",\n       \"4           Homo sapiens              GSM9192059   \\n\",\n       \"..                   ...                     ...   \\n\",\n       \"495         Mus musculus              GSM5575098   \\n\",\n       \"496         Mus musculus              GSM5575097   \\n\",\n       \"497         Mus musculus              GSM5575096   \\n\",\n       \"498         Mus musculus              GSM5575095   \\n\",\n       \"499         Mus musculus              GSM5575094   \\n\",\n       \"\\n\",\n       \"                               pool_member_sample_title pool_member_tax_id  \\\\\\n\",\n       \"0                                          Sublibrary 8               9606   \\n\",\n       \"1                                          Sublibrary 7               9606   \\n\",\n       \"2                                                  <NA>               <NA>   \\n\",\n       \"3                                                  <NA>               <NA>   \\n\",\n       \"4                                          Sublibrary 4               9606   \\n\",\n       \"..                                                  ...                ...   \\n\",\n       \"495  db/db day 5 wound skin sodium butyrate replicate 1              10090   \\n\",\n       \"496          db/db day 5 wound skin vehicle replicate 5              10090   \\n\",\n       \"497          db/db day 5 wound skin vehicle replicate 4              10090   \\n\",\n       \"498          db/db day 5 wound skin vehicle replicate 3              10090   \\n\",\n       \"499          db/db day 5 wound skin vehicle replicate 2              10090   \\n\",\n       \"\\n\",\n       \"    run_10_accession run_10_alias run_10_base_A_count run_10_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_base_G_count run_10_base_N_count run_10_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_1_filetype run_10_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_1_provider run_10_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_2_location run_10_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_3_filetype run_10_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_3_provider run_10_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cloudfile_4_location run_10_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_cluster_name run_10_database_1 run_10_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_is_public run_10_load_done run_10_published run_10_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_alternative_1_org run_10_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_cluster run_10_srafile_1_date run_10_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_md5 run_10_srafile_1_semantic_name run_10_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_sratoolkit run_10_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_1_version run_10_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_alternative_1_org run_10_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_cluster run_10_srafile_2_date run_10_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_md5 run_10_srafile_2_semantic_name run_10_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_sratoolkit run_10_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_2_url run_10_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_1_org run_10_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_2_org run_10_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_alternative_3_org run_10_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_cluster run_10_srafile_3_date run_10_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_md5 run_10_srafile_3_semantic_name run_10_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_sratoolkit run_10_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_3_url run_10_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_1_org run_10_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_2_org run_10_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_alternative_3_org run_10_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_cluster run_10_srafile_4_date run_10_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_md5 run_10_srafile_4_semantic_name run_10_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_sratoolkit run_10_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_srafile_4_url run_10_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_static_data_available run_10_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_10_total_base_cs_native run_10_total_bases run_10_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_accession run_11_alias run_11_base_A_count run_11_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_base_G_count run_11_base_N_count run_11_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_1_filetype run_11_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_1_provider run_11_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_2_location run_11_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_3_filetype run_11_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_3_provider run_11_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cloudfile_4_location run_11_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_cluster_name run_11_database_1 run_11_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_is_public run_11_load_done run_11_published run_11_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_alternative_1_org run_11_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_cluster run_11_srafile_1_date run_11_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_md5 run_11_srafile_1_semantic_name run_11_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_sratoolkit run_11_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_1_version run_11_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_alternative_1_org run_11_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_cluster run_11_srafile_2_date run_11_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_md5 run_11_srafile_2_semantic_name run_11_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_sratoolkit run_11_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_2_url run_11_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_1_org run_11_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_2_org run_11_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_alternative_3_org run_11_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_cluster run_11_srafile_3_date run_11_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_md5 run_11_srafile_3_semantic_name run_11_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_sratoolkit run_11_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_3_url run_11_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_1_org run_11_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_2_org run_11_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_alternative_3_org run_11_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_cluster run_11_srafile_4_date run_11_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_md5 run_11_srafile_4_semantic_name run_11_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_sratoolkit run_11_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_srafile_4_url run_11_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_static_data_available run_11_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_11_total_base_cs_native run_11_total_bases run_11_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_accession run_12_alias run_12_base_A_count run_12_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_base_G_count run_12_base_N_count run_12_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_1_filetype run_12_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_1_provider run_12_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_2_location run_12_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_3_filetype run_12_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_3_provider run_12_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cloudfile_4_location run_12_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_cluster_name run_12_database_1 run_12_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_is_public run_12_load_done run_12_published run_12_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_alternative_1_org run_12_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_cluster run_12_srafile_1_date run_12_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_md5 run_12_srafile_1_semantic_name run_12_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_sratoolkit run_12_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_1_version run_12_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_alternative_1_org run_12_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_cluster run_12_srafile_2_date run_12_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_md5 run_12_srafile_2_semantic_name run_12_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_sratoolkit run_12_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_2_url run_12_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_1_org run_12_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_2_org run_12_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_alternative_3_org run_12_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_cluster run_12_srafile_3_date run_12_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_md5 run_12_srafile_3_semantic_name run_12_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_sratoolkit run_12_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_3_url run_12_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_1_org run_12_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_2_org run_12_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_alternative_3_org run_12_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_cluster run_12_srafile_4_date run_12_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_md5 run_12_srafile_4_semantic_name run_12_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_sratoolkit run_12_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_srafile_4_url run_12_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_static_data_available run_12_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_12_total_base_cs_native run_12_total_bases run_12_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_accession run_13_alias run_13_base_A_count run_13_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_base_G_count run_13_base_N_count run_13_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_1_filetype run_13_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_1_provider run_13_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_2_location run_13_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_3_filetype run_13_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_3_provider run_13_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cloudfile_4_location run_13_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_cluster_name run_13_database_1 run_13_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_is_public run_13_load_done run_13_published run_13_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_alternative_1_org run_13_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_cluster run_13_srafile_1_date run_13_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_md5 run_13_srafile_1_semantic_name run_13_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_sratoolkit run_13_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_1_version run_13_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_alternative_1_org run_13_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_cluster run_13_srafile_2_date run_13_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_md5 run_13_srafile_2_semantic_name run_13_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_sratoolkit run_13_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_2_url run_13_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_1_org run_13_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_2_org run_13_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_alternative_3_org run_13_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_cluster run_13_srafile_3_date run_13_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_md5 run_13_srafile_3_semantic_name run_13_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_sratoolkit run_13_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_3_url run_13_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_1_org run_13_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_2_org run_13_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_alternative_3_org run_13_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_cluster run_13_srafile_4_date run_13_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_md5 run_13_srafile_4_semantic_name run_13_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_sratoolkit run_13_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_srafile_4_url run_13_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_static_data_available run_13_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_13_total_base_cs_native run_13_total_bases run_13_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_accession run_14_alias run_14_base_A_count run_14_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_base_G_count run_14_base_N_count run_14_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_1_filetype run_14_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_1_provider run_14_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_2_location run_14_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_3_filetype run_14_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_3_provider run_14_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cloudfile_4_location run_14_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_cluster_name run_14_database_1 run_14_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_is_public run_14_load_done run_14_published run_14_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_alternative_1_org run_14_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_cluster run_14_srafile_1_date run_14_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_md5 run_14_srafile_1_semantic_name run_14_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_sratoolkit run_14_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_1_version run_14_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_alternative_1_org run_14_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_cluster run_14_srafile_2_date run_14_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_md5 run_14_srafile_2_semantic_name run_14_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_sratoolkit run_14_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_2_url run_14_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_1_org run_14_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_2_org run_14_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_alternative_3_org run_14_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_cluster run_14_srafile_3_date run_14_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_md5 run_14_srafile_3_semantic_name run_14_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_sratoolkit run_14_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_3_url run_14_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_1_org run_14_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_2_org run_14_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_alternative_3_org run_14_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_cluster run_14_srafile_4_date run_14_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_md5 run_14_srafile_4_semantic_name run_14_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_sratoolkit run_14_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_srafile_4_url run_14_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_static_data_available run_14_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_14_total_base_cs_native run_14_total_bases run_14_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_accession run_15_alias run_15_base_A_count run_15_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_base_G_count run_15_base_N_count run_15_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_1_filetype run_15_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_1_provider run_15_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_2_location run_15_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_3_filetype run_15_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_3_provider run_15_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cloudfile_4_location run_15_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_cluster_name run_15_database_1 run_15_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_is_public run_15_load_done run_15_published run_15_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_alternative_1_org run_15_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_cluster run_15_srafile_1_date run_15_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_md5 run_15_srafile_1_semantic_name run_15_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_sratoolkit run_15_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_1_version run_15_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_alternative_1_org run_15_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_cluster run_15_srafile_2_date run_15_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_md5 run_15_srafile_2_semantic_name run_15_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_sratoolkit run_15_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_2_url run_15_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_1_org run_15_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_2_org run_15_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_alternative_3_org run_15_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_cluster run_15_srafile_3_date run_15_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_md5 run_15_srafile_3_semantic_name run_15_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_sratoolkit run_15_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_3_url run_15_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_1_org run_15_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_2_org run_15_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_alternative_3_org run_15_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_cluster run_15_srafile_4_date run_15_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_md5 run_15_srafile_4_semantic_name run_15_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_sratoolkit run_15_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_srafile_4_url run_15_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_static_data_available run_15_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_15_total_base_cs_native run_15_total_bases run_15_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_accession run_16_alias run_16_base_A_count run_16_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_base_G_count run_16_base_N_count run_16_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_1_filetype run_16_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_1_provider run_16_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_2_location run_16_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_3_filetype run_16_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_3_provider run_16_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cloudfile_4_location run_16_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_cluster_name run_16_database_1 run_16_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_is_public run_16_load_done run_16_published run_16_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_alternative_1_org run_16_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_cluster run_16_srafile_1_date run_16_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_md5 run_16_srafile_1_semantic_name run_16_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_sratoolkit run_16_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_1_version run_16_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_alternative_1_org run_16_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_cluster run_16_srafile_2_date run_16_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_md5 run_16_srafile_2_semantic_name run_16_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_sratoolkit run_16_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_2_url run_16_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_1_org run_16_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_2_org run_16_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_alternative_3_org run_16_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_cluster run_16_srafile_3_date run_16_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_md5 run_16_srafile_3_semantic_name run_16_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_sratoolkit run_16_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_3_url run_16_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_1_org run_16_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_2_org run_16_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_alternative_3_org run_16_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_cluster run_16_srafile_4_date run_16_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_md5 run_16_srafile_4_semantic_name run_16_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_sratoolkit run_16_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_srafile_4_url run_16_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_static_data_available run_16_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_16_total_base_cs_native run_16_total_bases run_16_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_accession run_17_alias run_17_base_A_count run_17_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_base_G_count run_17_base_N_count run_17_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_1_filetype run_17_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_1_provider run_17_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_2_location run_17_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_3_filetype run_17_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_3_provider run_17_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cloudfile_4_location run_17_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_cluster_name run_17_database_1 run_17_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_is_public run_17_load_done run_17_published run_17_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_alternative_1_org run_17_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_cluster run_17_srafile_1_date run_17_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_md5 run_17_srafile_1_semantic_name run_17_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_sratoolkit run_17_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_1_version run_17_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_alternative_1_org run_17_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_cluster run_17_srafile_2_date run_17_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_md5 run_17_srafile_2_semantic_name run_17_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_sratoolkit run_17_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_2_url run_17_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_1_org run_17_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_2_org run_17_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_alternative_3_org run_17_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_cluster run_17_srafile_3_date run_17_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_md5 run_17_srafile_3_semantic_name run_17_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_sratoolkit run_17_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_3_url run_17_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_1_org run_17_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_2_org run_17_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_alternative_3_org run_17_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_cluster run_17_srafile_4_date run_17_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_md5 run_17_srafile_4_semantic_name run_17_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_sratoolkit run_17_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_srafile_4_url run_17_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_static_data_available run_17_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_17_total_base_cs_native run_17_total_bases run_17_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_accession run_18_alias run_18_base_A_count run_18_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_base_G_count run_18_base_N_count run_18_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_1_filetype run_18_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_1_provider run_18_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_2_location run_18_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_3_filetype run_18_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_3_provider run_18_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cloudfile_4_location run_18_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_cluster_name run_18_database_1 run_18_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_is_public run_18_load_done run_18_published run_18_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_alternative_1_org run_18_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_cluster run_18_srafile_1_date run_18_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_md5 run_18_srafile_1_semantic_name run_18_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_sratoolkit run_18_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_1_version run_18_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_alternative_1_org run_18_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_cluster run_18_srafile_2_date run_18_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_md5 run_18_srafile_2_semantic_name run_18_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_sratoolkit run_18_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_2_url run_18_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_1_org run_18_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_2_org run_18_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_alternative_3_org run_18_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_cluster run_18_srafile_3_date run_18_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_md5 run_18_srafile_3_semantic_name run_18_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_sratoolkit run_18_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_3_url run_18_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_1_org run_18_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_2_org run_18_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_alternative_3_org run_18_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_cluster run_18_srafile_4_date run_18_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_md5 run_18_srafile_4_semantic_name run_18_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_sratoolkit run_18_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_srafile_4_url run_18_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_static_data_available run_18_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_18_total_base_cs_native run_18_total_bases run_18_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_accession run_19_alias run_19_base_A_count run_19_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_base_G_count run_19_base_N_count run_19_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_1_filetype run_19_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_1_provider run_19_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_2_location run_19_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_3_filetype run_19_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_3_provider run_19_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cloudfile_4_location run_19_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_cluster_name run_19_database_1 run_19_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_is_public run_19_load_done run_19_published run_19_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_alternative_1_org run_19_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_cluster run_19_srafile_1_date run_19_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_md5 run_19_srafile_1_semantic_name run_19_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_sratoolkit run_19_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_1_version run_19_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_alternative_1_org run_19_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_cluster run_19_srafile_2_date run_19_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_md5 run_19_srafile_2_semantic_name run_19_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_sratoolkit run_19_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_2_url run_19_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_1_org run_19_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_2_org run_19_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_alternative_3_org run_19_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_cluster run_19_srafile_3_date run_19_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_md5 run_19_srafile_3_semantic_name run_19_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_sratoolkit run_19_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_3_url run_19_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_1_org run_19_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_2_org run_19_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_alternative_3_org run_19_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_cluster run_19_srafile_4_date run_19_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_md5 run_19_srafile_4_semantic_name run_19_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_sratoolkit run_19_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_srafile_4_url run_19_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_static_data_available run_19_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_19_total_base_cs_native run_19_total_bases run_19_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"       run_1_alias run_1_assembly run_1_base_A_count run_1_base_C_count  \\\\\\n\",\n       \"0    GSM9192063_r1           <NA>        50336055550        43597383104   \\n\",\n       \"1    GSM9192062_r1           <NA>        51542139467        44674032953   \\n\",\n       \"2    GSM9192061_r1           <NA>               <NA>               <NA>   \\n\",\n       \"3    GSM9192060_r1           <NA>               <NA>               <NA>   \\n\",\n       \"4    GSM9192059_r1           <NA>        53089233655        45826461230   \\n\",\n       \"..             ...            ...                ...                ...   \\n\",\n       \"495  GSM5575098_r1           <NA>         2929603228         3595215455   \\n\",\n       \"496  GSM5575097_r1           <NA>         2568479589         2707472034   \\n\",\n       \"497  GSM5575096_r1           <NA>         2711388260         3302984465   \\n\",\n       \"498  GSM5575095_r1           <NA>         2913136810         3368980733   \\n\",\n       \"499  GSM5575094_r1           <NA>         3559540478         2869481579   \\n\",\n       \"\\n\",\n       \"    run_1_base_G_count run_1_base_N_count run_1_base_T_count  \\\\\\n\",\n       \"0          46359706066           32760673        48599473411   \\n\",\n       \"1          47161335680           33430713        49483067391   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4          48797580374           34407186        50215511443   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495         3695107349            3832498         2955013674   \\n\",\n       \"496         2836892951            4857993         2572952269   \\n\",\n       \"497         3482940899            7905491         2736219212   \\n\",\n       \"498         3678138268           10561719         2947888862   \\n\",\n       \"499         2992167162            6700560         3572176318   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_1_filetype run_1_cloudfile_1_location  \\\\\\n\",\n       \"0                        fastq               s3.us-east-1   \\n\",\n       \"1                        fastq               s3.us-east-1   \\n\",\n       \"2                       source               s3.us-east-1   \\n\",\n       \"3                       source               s3.us-east-1   \\n\",\n       \"4                        fastq               s3.us-east-1   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                      fastq               s3.us-east-1   \\n\",\n       \"496                      fastq               s3.us-east-1   \\n\",\n       \"497                      fastq               s3.us-east-1   \\n\",\n       \"498                      fastq               s3.us-east-1   \\n\",\n       \"499                      fastq               s3.us-east-1   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_1_provider run_1_cloudfile_2_filetype  \\\\\\n\",\n       \"0                           s3                        run   \\n\",\n       \"1                           s3                        run   \\n\",\n       \"2                           s3                       <NA>   \\n\",\n       \"3                           s3                       <NA>   \\n\",\n       \"4                           s3                        run   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                         s3                        run   \\n\",\n       \"496                         s3                        run   \\n\",\n       \"497                         s3                        run   \\n\",\n       \"498                         s3                        run   \\n\",\n       \"499                         s3                        run   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_2_location run_1_cloudfile_2_provider  \\\\\\n\",\n       \"0                 s3.us-east-1                         s3   \\n\",\n       \"1                 s3.us-east-1                         s3   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                 s3.us-east-1                         s3   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495               s3.us-east-1                         s3   \\n\",\n       \"496               s3.us-east-1                         s3   \\n\",\n       \"497               s3.us-east-1                         s3   \\n\",\n       \"498               s3.us-east-1                         s3   \\n\",\n       \"499               s3.us-east-1                         s3   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_3_filetype run_1_cloudfile_3_location  \\\\\\n\",\n       \"0                       run.zq                gs.us-east1   \\n\",\n       \"1                       run.zq                gs.us-east1   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                       run.zq                gs.us-east1   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                     run.zq                gs.us-east1   \\n\",\n       \"496                     run.zq                gs.us-east1   \\n\",\n       \"497                     run.zq                gs.us-east1   \\n\",\n       \"498                     run.zq                gs.us-east1   \\n\",\n       \"499                     run.zq                gs.us-east1   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_3_provider run_1_cloudfile_4_filetype  \\\\\\n\",\n       \"0                           gs                     run.zq   \\n\",\n       \"1                           gs                     run.zq   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                           gs                     run.zq   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                         gs                     run.zq   \\n\",\n       \"496                         gs                     run.zq   \\n\",\n       \"497                         gs                     run.zq   \\n\",\n       \"498                         gs                     run.zq   \\n\",\n       \"499                         gs                     run.zq   \\n\",\n       \"\\n\",\n       \"    run_1_cloudfile_4_location run_1_cloudfile_4_provider run_1_cluster_name  \\\\\\n\",\n       \"0                 s3.us-east-1                         s3             public   \\n\",\n       \"1                 s3.us-east-1                         s3             public   \\n\",\n       \"2                         <NA>                       <NA>             public   \\n\",\n       \"3                         <NA>                       <NA>             public   \\n\",\n       \"4                 s3.us-east-1                         s3             public   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495               s3.us-east-1                         s3             public   \\n\",\n       \"496               s3.us-east-1                         s3             public   \\n\",\n       \"497               s3.us-east-1                         s3             public   \\n\",\n       \"498               s3.us-east-1                         s3             public   \\n\",\n       \"499               s3.us-east-1                         s3             public   \\n\",\n       \"\\n\",\n       \"                                                                                        run_1_database_1  \\\\\\n\",\n       \"0    <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"1166206042\\\" /><Elements ...   \\n\",\n       \"1    <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"1190703742\\\" /><Elements ...   \\n\",\n       \"2                                                                                                   <NA>   \\n\",\n       \"3                                                                                                   <NA>   \\n\",\n       \"4    <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"1221995024\\\" /><Elements ...   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495  <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"67443792\\\" /><Elements co...   \\n\",\n       \"496  <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"54395336\\\" /><Elements co...   \\n\",\n       \"497  <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"62043721\\\" /><Elements co...   \\n\",\n       \"498  <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"65966410\\\" /><Elements co...   \\n\",\n       \"499  <Database><Table name=\\\"SEQUENCE\\\"><Statistics source=\\\"meta\\\"><Rows count=\\\"65557755\\\" /><Elements co...   \\n\",\n       \"\\n\",\n       \"    run_1_has_taxanalysis run_1_is_public run_1_load_done  \\\\\\n\",\n       \"0                       1            true            true   \\n\",\n       \"1                       1            true            true   \\n\",\n       \"2                    <NA>            true            true   \\n\",\n       \"3                    <NA>            true            true   \\n\",\n       \"4                       1            true            true   \\n\",\n       \"..                    ...             ...             ...   \\n\",\n       \"495                     1            true            true   \\n\",\n       \"496                     1            true            true   \\n\",\n       \"497                     1            true            true   \\n\",\n       \"498                     1            true            true   \\n\",\n       \"499                     1            true            true   \\n\",\n       \"\\n\",\n       \"         run_1_published run_1_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0    2025-08-25 00:09:09                   Use Cloud Data Delivery   \\n\",\n       \"1    2025-08-25 00:09:09                   Use Cloud Data Delivery   \\n\",\n       \"2    2025-08-25 00:15:31                   Use Cloud Data Delivery   \\n\",\n       \"3    2025-08-25 00:15:31                   Use Cloud Data Delivery   \\n\",\n       \"4    2025-08-25 00:09:10                   Use Cloud Data Delivery   \\n\",\n       \"..                   ...                                       ...   \\n\",\n       \"495  2021-09-16 11:09:10                   Use Cloud Data Delivery   \\n\",\n       \"496  2021-09-16 11:09:10                   Use Cloud Data Delivery   \\n\",\n       \"497  2021-09-16 11:09:10                   Use Cloud Data Delivery   \\n\",\n       \"498  2021-09-16 11:09:10                   Use Cloud Data Delivery   \\n\",\n       \"499  2021-09-16 11:09:10                   Use Cloud Data Delivery   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                           -   \\n\",\n       \"1                                           -   \\n\",\n       \"2                                           -   \\n\",\n       \"3                                           -   \\n\",\n       \"4                                           -   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                         -   \\n\",\n       \"496                                         -   \\n\",\n       \"497                                         -   \\n\",\n       \"498                                         -   \\n\",\n       \"499                                         -   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_1_org  \\\\\\n\",\n       \"0                                 AWS   \\n\",\n       \"1                                 AWS   \\n\",\n       \"2                                 AWS   \\n\",\n       \"3                                 AWS   \\n\",\n       \"4                                 AWS   \\n\",\n       \"..                                ...   \\n\",\n       \"495                               AWS   \\n\",\n       \"496                               AWS   \\n\",\n       \"497                               AWS   \\n\",\n       \"498                               AWS   \\n\",\n       \"499                               AWS   \\n\",\n       \"\\n\",\n       \"                                                      run_1_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0    s3://sra-pub-src-11/SRR35085617/NOVA0467.Sample8_20230216_161230.L001.1.fastq.gz.1   \\n\",\n       \"1     s3://sra-pub-src-3/SRR35085618/NOVA0467.Sample7_20230216_161230.L001.1.fastq.gz.1   \\n\",\n       \"2     s3://sra-pub-src-3/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.1.fastq.gz.1   \\n\",\n       \"3     s3://sra-pub-src-3/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.1.fastq.gz.1   \\n\",\n       \"4    s3://sra-pub-src-11/SRR35085621/NOVA0467.Sample4_20230216_161230.L001.1.fastq.gz.1   \\n\",\n       \"..                                                                                  ...   \\n\",\n       \"495                      s3://sra-pub-src-12/SRR15858828/16-D5-SB1_S16_ME_R1.fastq.gz.1   \\n\",\n       \"496                        s3://sra-pub-src-6/SRR15858827/15-D5-V5_S15_ME_R1.fastq.gz.1   \\n\",\n       \"497                       s3://sra-pub-src-17/SRR15858826/14-D5-V4_S14_ME_R1.fastq.gz.1   \\n\",\n       \"498                        s3://sra-pub-src-6/SRR15858825/13-D5-V3_S13_ME_R1.fastq.gz.1   \\n\",\n       \"499                        s3://sra-pub-src-3/SRR15858824/12-D5-V2_S12_ME_R1.fastq.gz.1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                   anonymous   \\n\",\n       \"3                                   anonymous   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                   worldwide   \\n\",\n       \"3                                   worldwide   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_2_org  \\\\\\n\",\n       \"0                                <NA>   \\n\",\n       \"1                                <NA>   \\n\",\n       \"2                                 AWS   \\n\",\n       \"3                                 AWS   \\n\",\n       \"4                                <NA>   \\n\",\n       \"..                                ...   \\n\",\n       \"495                              <NA>   \\n\",\n       \"496                              <NA>   \\n\",\n       \"497                              <NA>   \\n\",\n       \"498                              <NA>   \\n\",\n       \"499                              <NA>   \\n\",\n       \"\\n\",\n       \"                                                                       run_1_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                                                                                   <NA>   \\n\",\n       \"1                                                                                                   <NA>   \\n\",\n       \"2    https://sra-pub-src-1.s3.amazonaws.com/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.1.fastq...   \\n\",\n       \"3    https://sra-pub-src-1.s3.amazonaws.com/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.1.fastq...   \\n\",\n       \"4                                                                                                   <NA>   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495                                                                                                 <NA>   \\n\",\n       \"496                                                                                                 <NA>   \\n\",\n       \"497                                                                                                 <NA>   \\n\",\n       \"498                                                                                                 <NA>   \\n\",\n       \"499                                                                                                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_alternative_3_org run_1_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_cluster run_1_srafile_1_date  \\\\\\n\",\n       \"0                    public  2025-08-22 08:38:48   \\n\",\n       \"1                    public  2025-08-22 07:40:16   \\n\",\n       \"2                    public  2025-08-22 05:06:53   \\n\",\n       \"3                    public  2025-08-22 05:05:43   \\n\",\n       \"4                    public  2025-08-22 08:17:48   \\n\",\n       \"..                      ...                  ...   \\n\",\n       \"495                  public  2021-09-12 15:49:49   \\n\",\n       \"496                  public  2021-09-12 15:04:38   \\n\",\n       \"497                  public  2021-09-12 15:19:30   \\n\",\n       \"498                  public  2021-09-12 17:13:27   \\n\",\n       \"499                  public  2021-09-12 15:15:26   \\n\",\n       \"\\n\",\n       \"                             run_1_srafile_1_filename  \\\\\\n\",\n       \"0    NOVA0467.Sample8_20230216_161230.L001.1.fastq.gz   \\n\",\n       \"1    NOVA0467.Sample7_20230216_161230.L001.1.fastq.gz   \\n\",\n       \"2    NOVA0467.Sample6_20230216_161230.L001.1.fastq.gz   \\n\",\n       \"3    NOVA0467.Sample5_20230216_161230.L001.1.fastq.gz   \\n\",\n       \"4    NOVA0467.Sample4_20230216_161230.L001.1.fastq.gz   \\n\",\n       \"..                                                ...   \\n\",\n       \"495                      16-D5-SB1_S16_ME_R1.fastq.gz   \\n\",\n       \"496                       15-D5-V5_S15_ME_R1.fastq.gz   \\n\",\n       \"497                       14-D5-V4_S14_ME_R1.fastq.gz   \\n\",\n       \"498                       13-D5-V3_S13_ME_R1.fastq.gz   \\n\",\n       \"499                       12-D5-V2_S12_ME_R1.fastq.gz   \\n\",\n       \"\\n\",\n       \"                  run_1_srafile_1_md5 run_1_srafile_1_semantic_name  \\\\\\n\",\n       \"0    7e23e7b4c30ef1ba4938bbd6fdf48c40                         fastq   \\n\",\n       \"1    fa41995fba4040ee0e309350dc5d660a                         fastq   \\n\",\n       \"2    10c1615b1b4663495398d86be85ab0e9                         fastq   \\n\",\n       \"3    0cf395524bf03770147b7bd388c7cc69                         fastq   \\n\",\n       \"4    1489941887e4bfaa843b19d2c6582780                         fastq   \\n\",\n       \"..                                ...                           ...   \\n\",\n       \"495  4bbbf5b5f22cd7864dd29ca59f052598                         fastq   \\n\",\n       \"496  053b8b04bca99e9e4eef175f8eaa2df2                         fastq   \\n\",\n       \"497  2c03cde0f21e108341a2f12503696b68                         fastq   \\n\",\n       \"498  4e6845c8a21031f3e269b2eec93d9bb9                         fastq   \\n\",\n       \"499  d6285c3122f94dc490d6c2228ab13c13                         fastq   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_size run_1_srafile_1_sratoolkit run_1_srafile_1_supertype  \\\\\\n\",\n       \"0            47177385707                          0                  Original   \\n\",\n       \"1            48249250682                          0                  Original   \\n\",\n       \"2            97334669252                          0                  Original   \\n\",\n       \"3            64856991436                          0                  Original   \\n\",\n       \"4            48560135611                          0                  Original   \\n\",\n       \"..                   ...                        ...                       ...   \\n\",\n       \"495           3512841722                          0                  Original   \\n\",\n       \"496           2877953568                          0                  Original   \\n\",\n       \"497           3270284688                          0                  Original   \\n\",\n       \"498           3434266235                          0                  Original   \\n\",\n       \"499           3214800013                          0                  Original   \\n\",\n       \"\\n\",\n       \"                                                                                     run_1_srafile_1_url  \\\\\\n\",\n       \"0                                                                                                   <NA>   \\n\",\n       \"1                                                                                                   <NA>   \\n\",\n       \"2    https://sra-pub-src-1.s3.amazonaws.com/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.1.fastq...   \\n\",\n       \"3    https://sra-pub-src-1.s3.amazonaws.com/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.1.fastq...   \\n\",\n       \"4                                                                                                   <NA>   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495                                                                                                 <NA>   \\n\",\n       \"496                                                                                                 <NA>   \\n\",\n       \"497                                                                                                 <NA>   \\n\",\n       \"498                                                                                                 <NA>   \\n\",\n       \"499                                                                                                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_1_version run_1_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                         1                   Use Cloud Data Delivery   \\n\",\n       \"1                         1                   Use Cloud Data Delivery   \\n\",\n       \"2                         1                   Use Cloud Data Delivery   \\n\",\n       \"3                         1                   Use Cloud Data Delivery   \\n\",\n       \"4                         1                   Use Cloud Data Delivery   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                       1                   Use Cloud Data Delivery   \\n\",\n       \"496                       1                   Use Cloud Data Delivery   \\n\",\n       \"497                       1                   Use Cloud Data Delivery   \\n\",\n       \"498                       1                   Use Cloud Data Delivery   \\n\",\n       \"499                       1                   Use Cloud Data Delivery   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                           -   \\n\",\n       \"1                                           -   \\n\",\n       \"2                                           -   \\n\",\n       \"3                                           -   \\n\",\n       \"4                                           -   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                         -   \\n\",\n       \"496                                         -   \\n\",\n       \"497                                         -   \\n\",\n       \"498                                         -   \\n\",\n       \"499                                         -   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_1_org  \\\\\\n\",\n       \"0                                 AWS   \\n\",\n       \"1                                 AWS   \\n\",\n       \"2                                 AWS   \\n\",\n       \"3                                 AWS   \\n\",\n       \"4                                 AWS   \\n\",\n       \"..                                ...   \\n\",\n       \"495                               AWS   \\n\",\n       \"496                               AWS   \\n\",\n       \"497                               AWS   \\n\",\n       \"498                               AWS   \\n\",\n       \"499                               AWS   \\n\",\n       \"\\n\",\n       \"                                                      run_1_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0    s3://sra-pub-src-11/SRR35085617/NOVA0467.Sample8_20230216_161230.L001.2.fastq.gz.1   \\n\",\n       \"1     s3://sra-pub-src-3/SRR35085618/NOVA0467.Sample7_20230216_161230.L001.2.fastq.gz.1   \\n\",\n       \"2     s3://sra-pub-src-3/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.2.fastq.gz.1   \\n\",\n       \"3     s3://sra-pub-src-3/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.2.fastq.gz.1   \\n\",\n       \"4    s3://sra-pub-src-11/SRR35085621/NOVA0467.Sample4_20230216_161230.L001.2.fastq.gz.1   \\n\",\n       \"..                                                                                  ...   \\n\",\n       \"495                      s3://sra-pub-src-12/SRR15858828/16-D5-SB1_S16_ME_R2.fastq.gz.1   \\n\",\n       \"496                       s3://sra-pub-src-15/SRR15858827/15-D5-V5_S15_ME_R2.fastq.gz.1   \\n\",\n       \"497                       s3://sra-pub-src-17/SRR15858826/14-D5-V4_S14_ME_R2.fastq.gz.1   \\n\",\n       \"498                        s3://sra-pub-src-6/SRR15858825/13-D5-V3_S13_ME_R2.fastq.gz.1   \\n\",\n       \"499                        s3://sra-pub-src-3/SRR15858824/12-D5-V2_S12_ME_R2.fastq.gz.1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                   anonymous   \\n\",\n       \"3                                   anonymous   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                   worldwide   \\n\",\n       \"3                                   worldwide   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_2_org  \\\\\\n\",\n       \"0                                <NA>   \\n\",\n       \"1                                <NA>   \\n\",\n       \"2                                 AWS   \\n\",\n       \"3                                 AWS   \\n\",\n       \"4                                <NA>   \\n\",\n       \"..                                ...   \\n\",\n       \"495                              <NA>   \\n\",\n       \"496                              <NA>   \\n\",\n       \"497                              <NA>   \\n\",\n       \"498                              <NA>   \\n\",\n       \"499                              <NA>   \\n\",\n       \"\\n\",\n       \"                                                                       run_1_srafile_2_alternative_2_url  \\\\\\n\",\n       \"0                                                                                                   <NA>   \\n\",\n       \"1                                                                                                   <NA>   \\n\",\n       \"2    https://sra-pub-src-1.s3.amazonaws.com/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.2.fastq...   \\n\",\n       \"3    https://sra-pub-src-1.s3.amazonaws.com/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.2.fastq...   \\n\",\n       \"4                                                                                                   <NA>   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495                                                                                                 <NA>   \\n\",\n       \"496                                                                                                 <NA>   \\n\",\n       \"497                                                                                                 <NA>   \\n\",\n       \"498                                                                                                 <NA>   \\n\",\n       \"499                                                                                                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_alternative_3_org run_1_srafile_2_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_cluster run_1_srafile_2_date  \\\\\\n\",\n       \"0                    public  2025-08-22 08:43:22   \\n\",\n       \"1                    public  2025-08-22 07:38:23   \\n\",\n       \"2                    public  2025-08-22 05:12:10   \\n\",\n       \"3                    public  2025-08-22 05:09:45   \\n\",\n       \"4                    public  2025-08-22 08:21:48   \\n\",\n       \"..                      ...                  ...   \\n\",\n       \"495                  public  2021-09-12 15:50:57   \\n\",\n       \"496                  public  2021-09-12 15:05:31   \\n\",\n       \"497                  public  2021-09-12 15:19:10   \\n\",\n       \"498                  public  2021-09-12 17:14:32   \\n\",\n       \"499                  public  2021-09-12 15:15:45   \\n\",\n       \"\\n\",\n       \"                             run_1_srafile_2_filename  \\\\\\n\",\n       \"0    NOVA0467.Sample8_20230216_161230.L001.2.fastq.gz   \\n\",\n       \"1    NOVA0467.Sample7_20230216_161230.L001.2.fastq.gz   \\n\",\n       \"2    NOVA0467.Sample6_20230216_161230.L001.2.fastq.gz   \\n\",\n       \"3    NOVA0467.Sample5_20230216_161230.L001.2.fastq.gz   \\n\",\n       \"4    NOVA0467.Sample4_20230216_161230.L001.2.fastq.gz   \\n\",\n       \"..                                                ...   \\n\",\n       \"495                      16-D5-SB1_S16_ME_R2.fastq.gz   \\n\",\n       \"496                       15-D5-V5_S15_ME_R2.fastq.gz   \\n\",\n       \"497                       14-D5-V4_S14_ME_R2.fastq.gz   \\n\",\n       \"498                       13-D5-V3_S13_ME_R2.fastq.gz   \\n\",\n       \"499                       12-D5-V2_S12_ME_R2.fastq.gz   \\n\",\n       \"\\n\",\n       \"                  run_1_srafile_2_md5 run_1_srafile_2_semantic_name  \\\\\\n\",\n       \"0    84e2f9824557d19e733551e8bd86b1d3                         fastq   \\n\",\n       \"1    0a0b687894e62ca0ac02b5404c3de7cc                         fastq   \\n\",\n       \"2    5ac1136a3d0700344b32e80d5319e321                         fastq   \\n\",\n       \"3    9c2696580d8787eb54f45ecf44ca2abb                         fastq   \\n\",\n       \"4    5426d657819f17b3477842223241433f                         fastq   \\n\",\n       \"..                                ...                           ...   \\n\",\n       \"495  89a1588cdb600dd5cacf920b9bab0398                         fastq   \\n\",\n       \"496  246213a8d92ce91f0e9813039be8128c                         fastq   \\n\",\n       \"497  c99615c9da116c518128ddf3f0175fe8                         fastq   \\n\",\n       \"498  a2f2a9f59bff2750556946ed13492bdd                         fastq   \\n\",\n       \"499  6b6f7202542efee92786887cd92fc5d5                         fastq   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_size run_1_srafile_2_sratoolkit run_1_srafile_2_supertype  \\\\\\n\",\n       \"0            54477755743                          0                  Original   \\n\",\n       \"1            56224771836                          0                  Original   \\n\",\n       \"2           116053320033                          0                  Original   \\n\",\n       \"3            77021074079                          0                  Original   \\n\",\n       \"4            58237835017                          0                  Original   \\n\",\n       \"..                   ...                        ...                       ...   \\n\",\n       \"495           3589685139                          0                  Original   \\n\",\n       \"496           3016249646                          0                  Original   \\n\",\n       \"497           3327474706                          0                  Original   \\n\",\n       \"498           3609143922                          0                  Original   \\n\",\n       \"499           3456393183                          0                  Original   \\n\",\n       \"\\n\",\n       \"                                                                                     run_1_srafile_2_url  \\\\\\n\",\n       \"0                                                                                                   <NA>   \\n\",\n       \"1                                                                                                   <NA>   \\n\",\n       \"2    https://sra-pub-src-1.s3.amazonaws.com/SRR35085619/NOVA0467.Sample6_20230216_161230.L001.2.fastq...   \\n\",\n       \"3    https://sra-pub-src-1.s3.amazonaws.com/SRR35085620/NOVA0467.Sample5_20230216_161230.L001.2.fastq...   \\n\",\n       \"4                                                                                                   <NA>   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495                                                                                                 <NA>   \\n\",\n       \"496                                                                                                 <NA>   \\n\",\n       \"497                                                                                                 <NA>   \\n\",\n       \"498                                                                                                 <NA>   \\n\",\n       \"499                                                                                                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_2_version run_1_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                         1                                 anonymous   \\n\",\n       \"1                         1                                 anonymous   \\n\",\n       \"2                         1                                      <NA>   \\n\",\n       \"3                         1                                      <NA>   \\n\",\n       \"4                         1                                 anonymous   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                       1                                 anonymous   \\n\",\n       \"496                       1                                 anonymous   \\n\",\n       \"497                       1                                 anonymous   \\n\",\n       \"498                       1                                 anonymous   \\n\",\n       \"499                       1                                 anonymous   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                   worldwide   \\n\",\n       \"1                                   worldwide   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                   worldwide   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                 worldwide   \\n\",\n       \"496                                 worldwide   \\n\",\n       \"497                                 worldwide   \\n\",\n       \"498                                 worldwide   \\n\",\n       \"499                                 worldwide   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_1_org  \\\\\\n\",\n       \"0                                 AWS   \\n\",\n       \"1                                 AWS   \\n\",\n       \"2                                <NA>   \\n\",\n       \"3                                <NA>   \\n\",\n       \"4                                 AWS   \\n\",\n       \"..                                ...   \\n\",\n       \"495                               AWS   \\n\",\n       \"496                               AWS   \\n\",\n       \"497                               AWS   \\n\",\n       \"498                               AWS   \\n\",\n       \"499                               AWS   \\n\",\n       \"\\n\",\n       \"                                        run_1_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085617/SRR35085617   \\n\",\n       \"1    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085618/SRR35085618   \\n\",\n       \"2                                                                    <NA>   \\n\",\n       \"3                                                                    <NA>   \\n\",\n       \"4    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085621/SRR35085621   \\n\",\n       \"..                                                                    ...   \\n\",\n       \"495  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858828/SRR15858828   \\n\",\n       \"496  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858827/SRR15858827   \\n\",\n       \"497  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858826/SRR15858826   \\n\",\n       \"498  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858825/SRR15858825   \\n\",\n       \"499  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858824/SRR15858824   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_2_org run_1_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_alternative_3_org run_1_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_cluster run_1_srafile_3_date run_1_srafile_3_filename  \\\\\\n\",\n       \"0                    public  2025-08-22 08:58:11              SRR35085617   \\n\",\n       \"1                    public  2025-08-22 07:52:28              SRR35085618   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                    public  2025-08-22 08:36:17              SRR35085621   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                  public  2021-09-12 15:52:56              SRR15858828   \\n\",\n       \"496                  public  2021-09-12 15:06:44              SRR15858827   \\n\",\n       \"497                  public  2021-09-12 15:20:05              SRR15858826   \\n\",\n       \"498                  public  2021-09-12 17:16:45              SRR15858825   \\n\",\n       \"499                  public  2021-09-12 15:16:26              SRR15858824   \\n\",\n       \"\\n\",\n       \"                  run_1_srafile_3_md5 run_1_srafile_3_semantic_name  \\\\\\n\",\n       \"0    c0d36d71ec3e3c5b121e9bcae349a8da                SRA Normalized   \\n\",\n       \"1    ea62d63ec7a19dc21cdb11fb0a5ec7fa                SRA Normalized   \\n\",\n       \"2                                <NA>                          <NA>   \\n\",\n       \"3                                <NA>                          <NA>   \\n\",\n       \"4    4f3ab1791f5b3a0bde6a552db1440ee1                SRA Normalized   \\n\",\n       \"..                                ...                           ...   \\n\",\n       \"495  a84816cdd3ed30eebbd956394ff2e3e7                SRA Normalized   \\n\",\n       \"496  c87c622802569752e288e715e2b1ad1d                SRA Normalized   \\n\",\n       \"497  ce1036be1b68eb29040c6a3f18a8f079                SRA Normalized   \\n\",\n       \"498  24e9c42ff70362b749fd79b2ad4d8cfc                SRA Normalized   \\n\",\n       \"499  4a9ca8f3194df802c4e366329fb77136                SRA Normalized   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_size run_1_srafile_3_sratoolkit run_1_srafile_3_supertype  \\\\\\n\",\n       \"0            66603480815                          1               Primary ETL   \\n\",\n       \"1            68479330627                          1               Primary ETL   \\n\",\n       \"2                   <NA>                       <NA>                      <NA>   \\n\",\n       \"3                   <NA>                       <NA>                      <NA>   \\n\",\n       \"4            70518845039                          1               Primary ETL   \\n\",\n       \"..                   ...                        ...                       ...   \\n\",\n       \"495           4391587272                          1               Primary ETL   \\n\",\n       \"496           3661514086                          1               Primary ETL   \\n\",\n       \"497           4091464818                          1               Primary ETL   \\n\",\n       \"498           4388121525                          1               Primary ETL   \\n\",\n       \"499           4549423018                          1               Primary ETL   \\n\",\n       \"\\n\",\n       \"                                                      run_1_srafile_3_url  \\\\\\n\",\n       \"0    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085617/SRR35085617   \\n\",\n       \"1    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085618/SRR35085618   \\n\",\n       \"2                                                                    <NA>   \\n\",\n       \"3                                                                    <NA>   \\n\",\n       \"4    https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR35085621/SRR35085621   \\n\",\n       \"..                                                                    ...   \\n\",\n       \"495  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858828/SRR15858828   \\n\",\n       \"496  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858827/SRR15858827   \\n\",\n       \"497  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858826/SRR15858826   \\n\",\n       \"498  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858825/SRR15858825   \\n\",\n       \"499  https://sra-pub-run-odp.s3.amazonaws.com/sra/SRR15858824/SRR15858824   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_3_version run_1_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                         1                                 anonymous   \\n\",\n       \"1                         1                                 anonymous   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                         1                                 anonymous   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                       1                                 anonymous   \\n\",\n       \"496                       1                                 anonymous   \\n\",\n       \"497                       1                                 anonymous   \\n\",\n       \"498                       1                                 anonymous   \\n\",\n       \"499                       1                                 anonymous   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                   worldwide   \\n\",\n       \"1                                   worldwide   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                   worldwide   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                 worldwide   \\n\",\n       \"496                                 worldwide   \\n\",\n       \"497                                 worldwide   \\n\",\n       \"498                                 worldwide   \\n\",\n       \"499                                 worldwide   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_1_org  \\\\\\n\",\n       \"0                                NCBI   \\n\",\n       \"1                                NCBI   \\n\",\n       \"2                                <NA>   \\n\",\n       \"3                                <NA>   \\n\",\n       \"4                                NCBI   \\n\",\n       \"..                                ...   \\n\",\n       \"495                              NCBI   \\n\",\n       \"496                              NCBI   \\n\",\n       \"497                              NCBI   \\n\",\n       \"498                              NCBI   \\n\",\n       \"499                              NCBI   \\n\",\n       \"\\n\",\n       \"                                                                       run_1_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085617/SRR3508...   \\n\",\n       \"1    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085618/SRR3508...   \\n\",\n       \"2                                                                                                   <NA>   \\n\",\n       \"3                                                                                                   <NA>   \\n\",\n       \"4    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085621/SRR3508...   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858828/SRR1585...   \\n\",\n       \"496  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858827/SRR1585...   \\n\",\n       \"497  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR015/15858/SRR15858826/SRR158...   \\n\",\n       \"498  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858825/SRR1585...   \\n\",\n       \"499  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR015/15858/SRR15858824/SRR158...   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                aws identity   \\n\",\n       \"1                                aws identity   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                aws identity   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                              aws identity   \\n\",\n       \"496                              aws identity   \\n\",\n       \"497                              aws identity   \\n\",\n       \"498                              aws identity   \\n\",\n       \"499                              aws identity   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                s3.us-east-1   \\n\",\n       \"1                                s3.us-east-1   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                s3.us-east-1   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                              s3.us-east-1   \\n\",\n       \"496                              s3.us-east-1   \\n\",\n       \"497                              s3.us-east-1   \\n\",\n       \"498                              s3.us-east-1   \\n\",\n       \"499                              s3.us-east-1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_2_org  \\\\\\n\",\n       \"0                                 AWS   \\n\",\n       \"1                                 AWS   \\n\",\n       \"2                                <NA>   \\n\",\n       \"3                                <NA>   \\n\",\n       \"4                                 AWS   \\n\",\n       \"..                                ...   \\n\",\n       \"495                               AWS   \\n\",\n       \"496                               AWS   \\n\",\n       \"497                               AWS   \\n\",\n       \"498                               AWS   \\n\",\n       \"499                               AWS   \\n\",\n       \"\\n\",\n       \"                    run_1_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0    s3://sra-pub-zq-4/SRR35085617/SRR35085617.lite.1   \\n\",\n       \"1    s3://sra-pub-zq-4/SRR35085618/SRR35085618.lite.1   \\n\",\n       \"2                                                <NA>   \\n\",\n       \"3                                                <NA>   \\n\",\n       \"4    s3://sra-pub-zq-4/SRR35085621/SRR35085621.lite.1   \\n\",\n       \"..                                                ...   \\n\",\n       \"495  s3://sra-pub-zq-7/SRR15858828/SRR15858828.lite.1   \\n\",\n       \"496  s3://sra-pub-zq-6/SRR15858827/SRR15858827.lite.1   \\n\",\n       \"497  s3://sra-pub-zq-1/SRR15858826/SRR15858826.lite.1   \\n\",\n       \"498  s3://sra-pub-zq-7/SRR15858825/SRR15858825.lite.1   \\n\",\n       \"499  s3://sra-pub-zq-8/SRR15858824/SRR15858824.lite.1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                gcp identity   \\n\",\n       \"1                                gcp identity   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                gcp identity   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                              gcp identity   \\n\",\n       \"496                              gcp identity   \\n\",\n       \"497                              gcp identity   \\n\",\n       \"498                              gcp identity   \\n\",\n       \"499                              gcp identity   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                 gs.us-east1   \\n\",\n       \"1                                 gs.us-east1   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                 gs.us-east1   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                               gs.us-east1   \\n\",\n       \"496                               gs.us-east1   \\n\",\n       \"497                               gs.us-east1   \\n\",\n       \"498                               gs.us-east1   \\n\",\n       \"499                               gs.us-east1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_alternative_3_org  \\\\\\n\",\n       \"0                                 GCP   \\n\",\n       \"1                                 GCP   \\n\",\n       \"2                                <NA>   \\n\",\n       \"3                                <NA>   \\n\",\n       \"4                                 GCP   \\n\",\n       \"..                                ...   \\n\",\n       \"495                               GCP   \\n\",\n       \"496                               GCP   \\n\",\n       \"497                               GCP   \\n\",\n       \"498                               GCP   \\n\",\n       \"499                               GCP   \\n\",\n       \"\\n\",\n       \"                      run_1_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0    gs://sra-pub-zq-106/SRR35085617/SRR35085617.lite.1   \\n\",\n       \"1    gs://sra-pub-zq-106/SRR35085618/SRR35085618.lite.1   \\n\",\n       \"2                                                  <NA>   \\n\",\n       \"3                                                  <NA>   \\n\",\n       \"4    gs://sra-pub-zq-106/SRR35085621/SRR35085621.lite.1   \\n\",\n       \"..                                                  ...   \\n\",\n       \"495  gs://sra-pub-zq-106/SRR15858828/SRR15858828.lite.1   \\n\",\n       \"496  gs://sra-pub-zq-104/SRR15858827/SRR15858827.lite.1   \\n\",\n       \"497  gs://sra-pub-zq-101/SRR15858826/SRR15858826.lite.1   \\n\",\n       \"498  gs://sra-pub-zq-109/SRR15858825/SRR15858825.lite.1   \\n\",\n       \"499  gs://sra-pub-zq-101/SRR15858824/SRR15858824.lite.1   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_cluster run_1_srafile_4_date run_1_srafile_4_filename  \\\\\\n\",\n       \"0                    public  2025-08-22 13:40:54         SRR35085617.lite   \\n\",\n       \"1                    public  2025-08-22 08:58:57         SRR35085618.lite   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                    public  2025-08-22 13:44:39         SRR35085621.lite   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                  public  2022-09-22 11:24:04         SRR15858828.lite   \\n\",\n       \"496                  public  2022-09-14 17:05:21         SRR15858827.lite   \\n\",\n       \"497                  public  2022-11-15 03:38:05         SRR15858826.lite   \\n\",\n       \"498                  public  2022-09-17 14:07:40         SRR15858825.lite   \\n\",\n       \"499                  public  2022-08-05 06:04:24         SRR15858824.lite   \\n\",\n       \"\\n\",\n       \"                  run_1_srafile_4_md5 run_1_srafile_4_semantic_name  \\\\\\n\",\n       \"0    bc058c63052b01f9d8fcc28498eeec8c                      SRA Lite   \\n\",\n       \"1    99d6222f7b8a7e4d278b2c1bbaf43b2a                      SRA Lite   \\n\",\n       \"2                                <NA>                          <NA>   \\n\",\n       \"3                                <NA>                          <NA>   \\n\",\n       \"4    4a1b64e214c8bf2cbb028eb46271ed10                      SRA Lite   \\n\",\n       \"..                                ...                           ...   \\n\",\n       \"495  68a48992accba11b23dbf713cad29caa                      SRA Lite   \\n\",\n       \"496  b2a140163009df32e50c70a846e0ff0f                      SRA Lite   \\n\",\n       \"497  50ae49bf89119652fc4f2c0db770bb1b                      SRA Lite   \\n\",\n       \"498  5c04e895a40d35c76388f8736d2da1b6                      SRA Lite   \\n\",\n       \"499  43410aa709730d43955051935f830508                      SRA Lite   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_size run_1_srafile_4_sratoolkit run_1_srafile_4_supertype  \\\\\\n\",\n       \"0            48521590347                          1               Primary ETL   \\n\",\n       \"1            49532678063                          1               Primary ETL   \\n\",\n       \"2                   <NA>                       <NA>                      <NA>   \\n\",\n       \"3                   <NA>                       <NA>                      <NA>   \\n\",\n       \"4            50806198935                          1               Primary ETL   \\n\",\n       \"..                   ...                        ...                       ...   \\n\",\n       \"495           3518818364                          1               Primary ETL   \\n\",\n       \"496           2854855682                          1               Primary ETL   \\n\",\n       \"497           3261968598                          1               Primary ETL   \\n\",\n       \"498           3449755369                          1               Primary ETL   \\n\",\n       \"499           3456931570                          1               Primary ETL   \\n\",\n       \"\\n\",\n       \"                                                                                     run_1_srafile_4_url  \\\\\\n\",\n       \"0    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085617/SRR3508...   \\n\",\n       \"1    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085618/SRR3508...   \\n\",\n       \"2                                                                                                   <NA>   \\n\",\n       \"3                                                                                                   <NA>   \\n\",\n       \"4    https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR035/35085/SRR35085621/SRR3508...   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858828/SRR1585...   \\n\",\n       \"496  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858827/SRR1585...   \\n\",\n       \"497  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos9/sra-pub-zq-922/SRR015/15858/SRR15858826/SRR158...   \\n\",\n       \"498  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-zq-38/SRR015/15858/SRR15858825/SRR1585...   \\n\",\n       \"499  https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos8/sra-pub-zq-820/SRR015/15858/SRR15858824/SRR158...   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_4_version run_1_srafile_5_alternative_1_access_type  \\\\\\n\",\n       \"0                         1                                      <NA>   \\n\",\n       \"1                         1                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                         1                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                       1                                      <NA>   \\n\",\n       \"496                       1                                      <NA>   \\n\",\n       \"497                       1                                      <NA>   \\n\",\n       \"498                       1                                      <NA>   \\n\",\n       \"499                       1                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_1_org run_1_srafile_5_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_2_org run_1_srafile_5_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_alternative_3_org run_1_srafile_5_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_cluster run_1_srafile_5_date run_1_srafile_5_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_md5 run_1_srafile_5_semantic_name run_1_srafile_5_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_sratoolkit run_1_srafile_5_supertype run_1_srafile_5_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_5_version run_1_srafile_6_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_1_org run_1_srafile_6_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_2_org run_1_srafile_6_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_alternative_3_org run_1_srafile_6_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_cluster run_1_srafile_6_date run_1_srafile_6_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_md5 run_1_srafile_6_semantic_name run_1_srafile_6_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_sratoolkit run_1_srafile_6_supertype run_1_srafile_6_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_1_srafile_6_version run_1_static_data_available  \\\\\\n\",\n       \"0                      <NA>                           1   \\n\",\n       \"1                      <NA>                           1   \\n\",\n       \"2                      <NA>                           1   \\n\",\n       \"3                      <NA>                           1   \\n\",\n       \"4                      <NA>                           1   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                           1   \\n\",\n       \"496                    <NA>                           1   \\n\",\n       \"497                    <NA>                           1   \\n\",\n       \"498                    <NA>                           1   \\n\",\n       \"499                    <NA>                           1   \\n\",\n       \"\\n\",\n       \"    run_1_total_base_count run_1_total_base_cs_native run_20_accession  \\\\\\n\",\n       \"0             188925378804                      false             <NA>   \\n\",\n       \"1             192894006204                      false             <NA>   \\n\",\n       \"2                     <NA>                       <NA>             <NA>   \\n\",\n       \"3                     <NA>                       <NA>             <NA>   \\n\",\n       \"4             197963193888                      false             <NA>   \\n\",\n       \"..                     ...                        ...              ...   \\n\",\n       \"495            13178772204                      false             <NA>   \\n\",\n       \"496            10690654836                      false             <NA>   \\n\",\n       \"497            12241438327                      false             <NA>   \\n\",\n       \"498            12918706392                      false             <NA>   \\n\",\n       \"499            13000066097                      false             <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_alias run_20_base_A_count run_20_base_C_count run_20_base_G_count  \\\\\\n\",\n       \"0           <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"1           <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"2           <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"3           <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"4           <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"..           ...                 ...                 ...                 ...   \\n\",\n       \"495         <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"496         <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"497         <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"498         <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"499         <NA>                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_base_N_count run_20_base_T_count run_20_cloudfile_1_filetype  \\\\\\n\",\n       \"0                  <NA>                <NA>                        <NA>   \\n\",\n       \"1                  <NA>                <NA>                        <NA>   \\n\",\n       \"2                  <NA>                <NA>                        <NA>   \\n\",\n       \"3                  <NA>                <NA>                        <NA>   \\n\",\n       \"4                  <NA>                <NA>                        <NA>   \\n\",\n       \"..                  ...                 ...                         ...   \\n\",\n       \"495                <NA>                <NA>                        <NA>   \\n\",\n       \"496                <NA>                <NA>                        <NA>   \\n\",\n       \"497                <NA>                <NA>                        <NA>   \\n\",\n       \"498                <NA>                <NA>                        <NA>   \\n\",\n       \"499                <NA>                <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_1_location run_20_cloudfile_1_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_2_filetype run_20_cloudfile_2_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_2_provider run_20_cloudfile_3_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_3_location run_20_cloudfile_3_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_4_filetype run_20_cloudfile_4_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_cloudfile_4_provider run_20_cluster_name run_20_database_1  \\\\\\n\",\n       \"0                          <NA>                <NA>              <NA>   \\n\",\n       \"1                          <NA>                <NA>              <NA>   \\n\",\n       \"2                          <NA>                <NA>              <NA>   \\n\",\n       \"3                          <NA>                <NA>              <NA>   \\n\",\n       \"4                          <NA>                <NA>              <NA>   \\n\",\n       \"..                          ...                 ...               ...   \\n\",\n       \"495                        <NA>                <NA>              <NA>   \\n\",\n       \"496                        <NA>                <NA>              <NA>   \\n\",\n       \"497                        <NA>                <NA>              <NA>   \\n\",\n       \"498                        <NA>                <NA>              <NA>   \\n\",\n       \"499                        <NA>                <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_has_taxanalysis run_20_is_public run_20_load_done run_20_published  \\\\\\n\",\n       \"0                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"1                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"2                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"3                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"4                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"..                     ...              ...              ...              ...   \\n\",\n       \"495                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"496                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"497                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"498                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"499                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_size run_20_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0          <NA>                                       <NA>   \\n\",\n       \"1          <NA>                                       <NA>   \\n\",\n       \"2          <NA>                                       <NA>   \\n\",\n       \"3          <NA>                                       <NA>   \\n\",\n       \"4          <NA>                                       <NA>   \\n\",\n       \"..          ...                                        ...   \\n\",\n       \"495        <NA>                                       <NA>   \\n\",\n       \"496        <NA>                                       <NA>   \\n\",\n       \"497        <NA>                                       <NA>   \\n\",\n       \"498        <NA>                                       <NA>   \\n\",\n       \"499        <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_alternative_1_org run_20_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_cluster run_20_srafile_1_date run_20_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_md5 run_20_srafile_1_semantic_name run_20_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_sratoolkit run_20_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_1_version run_20_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_alternative_1_org run_20_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_cluster run_20_srafile_2_date run_20_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_md5 run_20_srafile_2_semantic_name run_20_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_sratoolkit run_20_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_2_url run_20_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_1_org run_20_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_2_org run_20_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_alternative_3_org run_20_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_cluster run_20_srafile_3_date run_20_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_md5 run_20_srafile_3_semantic_name run_20_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_sratoolkit run_20_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_3_url run_20_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_1_org run_20_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_2_org run_20_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_alternative_3_org run_20_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_cluster run_20_srafile_4_date run_20_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_md5 run_20_srafile_4_semantic_name run_20_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_sratoolkit run_20_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_srafile_4_url run_20_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_static_data_available run_20_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_20_total_base_cs_native run_20_total_bases run_20_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_accession run_21_alias run_21_base_A_count run_21_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_base_G_count run_21_base_N_count run_21_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_1_filetype run_21_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_1_provider run_21_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_2_location run_21_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_3_filetype run_21_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_3_provider run_21_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cloudfile_4_location run_21_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_cluster_name run_21_database_1 run_21_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_is_public run_21_load_done run_21_published run_21_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_alternative_1_org run_21_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_cluster run_21_srafile_1_date run_21_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_md5 run_21_srafile_1_semantic_name run_21_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_sratoolkit run_21_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_1_version run_21_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_alternative_1_org run_21_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_cluster run_21_srafile_2_date run_21_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_md5 run_21_srafile_2_semantic_name run_21_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_sratoolkit run_21_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_2_url run_21_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_1_org run_21_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_2_org run_21_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_alternative_3_org run_21_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_cluster run_21_srafile_3_date run_21_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_md5 run_21_srafile_3_semantic_name run_21_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_sratoolkit run_21_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_3_url run_21_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_1_org run_21_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_2_org run_21_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_alternative_3_org run_21_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_cluster run_21_srafile_4_date run_21_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_md5 run_21_srafile_4_semantic_name run_21_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_sratoolkit run_21_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_srafile_4_url run_21_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_static_data_available run_21_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_21_total_base_cs_native run_21_total_bases run_21_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_accession run_22_alias run_22_base_A_count run_22_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_base_G_count run_22_base_N_count run_22_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_1_filetype run_22_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_1_provider run_22_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_2_location run_22_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_3_filetype run_22_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_3_provider run_22_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cloudfile_4_location run_22_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_cluster_name run_22_database_1 run_22_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_is_public run_22_load_done run_22_published run_22_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_alternative_1_org run_22_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_cluster run_22_srafile_1_date run_22_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_md5 run_22_srafile_1_semantic_name run_22_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_sratoolkit run_22_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_1_version run_22_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_alternative_1_org run_22_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_cluster run_22_srafile_2_date run_22_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_md5 run_22_srafile_2_semantic_name run_22_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_sratoolkit run_22_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_2_url run_22_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_1_org run_22_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_2_org run_22_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_alternative_3_org run_22_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_cluster run_22_srafile_3_date run_22_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_md5 run_22_srafile_3_semantic_name run_22_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_sratoolkit run_22_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_3_url run_22_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_1_org run_22_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_2_org run_22_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_alternative_3_org run_22_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_cluster run_22_srafile_4_date run_22_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_md5 run_22_srafile_4_semantic_name run_22_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_sratoolkit run_22_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_srafile_4_url run_22_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_static_data_available run_22_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_22_total_base_cs_native run_22_total_bases run_22_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_accession run_23_alias run_23_base_A_count run_23_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_base_G_count run_23_base_N_count run_23_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_1_filetype run_23_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_1_provider run_23_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_2_location run_23_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_3_filetype run_23_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_3_provider run_23_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cloudfile_4_location run_23_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_cluster_name run_23_database_1 run_23_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_is_public run_23_load_done run_23_published run_23_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_alternative_1_org run_23_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_cluster run_23_srafile_1_date run_23_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_md5 run_23_srafile_1_semantic_name run_23_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_sratoolkit run_23_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_1_version run_23_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_alternative_1_org run_23_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_cluster run_23_srafile_2_date run_23_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_md5 run_23_srafile_2_semantic_name run_23_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_sratoolkit run_23_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_2_url run_23_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_1_org run_23_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_2_org run_23_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_alternative_3_org run_23_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_cluster run_23_srafile_3_date run_23_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_md5 run_23_srafile_3_semantic_name run_23_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_sratoolkit run_23_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_3_url run_23_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_1_org run_23_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_2_org run_23_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_alternative_3_org run_23_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_cluster run_23_srafile_4_date run_23_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_md5 run_23_srafile_4_semantic_name run_23_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_sratoolkit run_23_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_srafile_4_url run_23_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_static_data_available run_23_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_23_total_base_cs_native run_23_total_bases run_23_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_accession run_24_alias run_24_base_A_count run_24_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_base_G_count run_24_base_N_count run_24_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_1_filetype run_24_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_1_provider run_24_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_2_location run_24_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_3_filetype run_24_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_3_provider run_24_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cloudfile_4_location run_24_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_cluster_name run_24_database_1 run_24_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_is_public run_24_load_done run_24_published run_24_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_alternative_1_org run_24_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_cluster run_24_srafile_1_date run_24_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_md5 run_24_srafile_1_semantic_name run_24_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_sratoolkit run_24_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_1_version run_24_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_alternative_1_org run_24_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_cluster run_24_srafile_2_date run_24_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_md5 run_24_srafile_2_semantic_name run_24_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_sratoolkit run_24_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_2_url run_24_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_1_org run_24_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_2_org run_24_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_alternative_3_org run_24_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_cluster run_24_srafile_3_date run_24_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_md5 run_24_srafile_3_semantic_name run_24_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_sratoolkit run_24_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_3_url run_24_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_1_org run_24_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_2_org run_24_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_alternative_3_org run_24_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_cluster run_24_srafile_4_date run_24_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_md5 run_24_srafile_4_semantic_name run_24_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_sratoolkit run_24_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_srafile_4_url run_24_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_static_data_available run_24_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_24_total_base_cs_native run_24_total_bases run_24_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_accession run_25_alias run_25_base_A_count run_25_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_base_G_count run_25_base_N_count run_25_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_1_filetype run_25_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_1_provider run_25_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_2_location run_25_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_3_filetype run_25_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_3_provider run_25_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cloudfile_4_location run_25_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_cluster_name run_25_database_1 run_25_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_is_public run_25_load_done run_25_published run_25_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_alternative_1_org run_25_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_cluster run_25_srafile_1_date run_25_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_md5 run_25_srafile_1_semantic_name run_25_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_sratoolkit run_25_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_1_version run_25_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_alternative_1_org run_25_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_cluster run_25_srafile_2_date run_25_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_md5 run_25_srafile_2_semantic_name run_25_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_sratoolkit run_25_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_2_url run_25_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_1_org run_25_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_2_org run_25_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_alternative_3_org run_25_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_cluster run_25_srafile_3_date run_25_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_md5 run_25_srafile_3_semantic_name run_25_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_sratoolkit run_25_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_3_url run_25_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_1_org run_25_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_2_org run_25_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_alternative_3_org run_25_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_cluster run_25_srafile_4_date run_25_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_md5 run_25_srafile_4_semantic_name run_25_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_sratoolkit run_25_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_srafile_4_url run_25_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_static_data_available run_25_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_25_total_base_cs_native run_25_total_bases run_25_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_accession run_26_alias run_26_base_A_count run_26_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_base_G_count run_26_base_N_count run_26_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_1_filetype run_26_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_1_provider run_26_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_2_location run_26_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_3_filetype run_26_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_3_provider run_26_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cloudfile_4_location run_26_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_cluster_name run_26_database_1 run_26_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_is_public run_26_load_done run_26_published run_26_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_alternative_1_org run_26_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_cluster run_26_srafile_1_date run_26_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_md5 run_26_srafile_1_semantic_name run_26_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_sratoolkit run_26_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_1_version run_26_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_alternative_1_org run_26_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_cluster run_26_srafile_2_date run_26_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_md5 run_26_srafile_2_semantic_name run_26_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_sratoolkit run_26_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_2_url run_26_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_1_org run_26_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_2_org run_26_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_alternative_3_org run_26_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_cluster run_26_srafile_3_date run_26_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_md5 run_26_srafile_3_semantic_name run_26_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_sratoolkit run_26_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_3_url run_26_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_1_org run_26_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_2_org run_26_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_alternative_3_org run_26_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_cluster run_26_srafile_4_date run_26_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_md5 run_26_srafile_4_semantic_name run_26_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_sratoolkit run_26_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_srafile_4_url run_26_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_static_data_available run_26_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_26_total_base_cs_native run_26_total_bases run_26_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_accession run_27_alias run_27_base_A_count run_27_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_base_G_count run_27_base_N_count run_27_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_1_filetype run_27_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_1_provider run_27_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_2_location run_27_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_3_filetype run_27_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_3_provider run_27_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cloudfile_4_location run_27_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_cluster_name run_27_database_1 run_27_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_is_public run_27_load_done run_27_published run_27_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_alternative_1_org run_27_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_cluster run_27_srafile_1_date run_27_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_md5 run_27_srafile_1_semantic_name run_27_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_sratoolkit run_27_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_1_version run_27_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_alternative_1_org run_27_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_cluster run_27_srafile_2_date run_27_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_md5 run_27_srafile_2_semantic_name run_27_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_sratoolkit run_27_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_2_url run_27_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_1_org run_27_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_2_org run_27_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_alternative_3_org run_27_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_cluster run_27_srafile_3_date run_27_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_md5 run_27_srafile_3_semantic_name run_27_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_sratoolkit run_27_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_3_url run_27_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_1_org run_27_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_2_org run_27_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_alternative_3_org run_27_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_cluster run_27_srafile_4_date run_27_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_md5 run_27_srafile_4_semantic_name run_27_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_sratoolkit run_27_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_srafile_4_url run_27_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_static_data_available run_27_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_27_total_base_cs_native run_27_total_bases run_27_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_accession run_28_alias run_28_base_A_count run_28_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_base_G_count run_28_base_N_count run_28_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_1_filetype run_28_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_1_provider run_28_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_2_location run_28_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_3_filetype run_28_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_3_provider run_28_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cloudfile_4_location run_28_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_cluster_name run_28_database_1 run_28_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_is_public run_28_load_done run_28_published run_28_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_alternative_1_org run_28_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_cluster run_28_srafile_1_date run_28_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_md5 run_28_srafile_1_semantic_name run_28_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_sratoolkit run_28_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_1_version run_28_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_alternative_1_org run_28_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_cluster run_28_srafile_2_date run_28_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_md5 run_28_srafile_2_semantic_name run_28_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_sratoolkit run_28_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_2_url run_28_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_1_org run_28_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_2_org run_28_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_alternative_3_org run_28_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_cluster run_28_srafile_3_date run_28_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_md5 run_28_srafile_3_semantic_name run_28_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_sratoolkit run_28_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_3_url run_28_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_1_org run_28_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_2_org run_28_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_alternative_3_org run_28_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_cluster run_28_srafile_4_date run_28_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_md5 run_28_srafile_4_semantic_name run_28_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_sratoolkit run_28_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_srafile_4_url run_28_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_static_data_available run_28_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_28_total_base_cs_native run_28_total_bases run_28_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_accession run_29_alias run_29_base_A_count run_29_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_base_G_count run_29_base_N_count run_29_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_1_filetype run_29_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_1_provider run_29_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_2_location run_29_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_3_filetype run_29_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_3_provider run_29_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cloudfile_4_location run_29_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_cluster_name run_29_database_1 run_29_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_is_public run_29_load_done run_29_published run_29_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_alternative_1_org run_29_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_cluster run_29_srafile_1_date run_29_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_md5 run_29_srafile_1_semantic_name run_29_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_sratoolkit run_29_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_1_version run_29_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_alternative_1_org run_29_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_cluster run_29_srafile_2_date run_29_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_md5 run_29_srafile_2_semantic_name run_29_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_sratoolkit run_29_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_2_url run_29_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_1_org run_29_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_2_org run_29_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_alternative_3_org run_29_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_cluster run_29_srafile_3_date run_29_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_md5 run_29_srafile_3_semantic_name run_29_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_sratoolkit run_29_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_3_url run_29_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_1_org run_29_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_2_org run_29_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_alternative_3_org run_29_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_cluster run_29_srafile_4_date run_29_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_md5 run_29_srafile_4_semantic_name run_29_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_sratoolkit run_29_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_srafile_4_url run_29_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_static_data_available run_29_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_29_total_base_cs_native run_29_total_bases run_29_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_accession run_2_alias run_2_base_A_count run_2_base_C_count  \\\\\\n\",\n       \"0              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"1              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"2              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"3              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"4              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"..              ...         ...                ...                ...   \\n\",\n       \"495            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"496            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"497            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"498            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"499            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_base_G_count run_2_base_N_count run_2_base_T_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_1_filetype run_2_cloudfile_1_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_1_provider run_2_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_2_location run_2_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_3_filetype run_2_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_3_provider run_2_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_cloudfile_4_location run_2_cloudfile_4_provider run_2_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_database_1 run_2_has_taxanalysis run_2_is_public run_2_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_published run_2_size run_2_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_1_org run_2_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_2_org run_2_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_alternative_3_org run_2_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_cluster run_2_srafile_1_date run_2_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_md5 run_2_srafile_1_semantic_name run_2_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_sratoolkit run_2_srafile_1_supertype run_2_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_1_version run_2_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_alternative_1_org run_2_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_alternative_2_org run_2_srafile_2_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_cluster run_2_srafile_2_date run_2_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_md5 run_2_srafile_2_semantic_name run_2_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_sratoolkit run_2_srafile_2_supertype run_2_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_2_version run_2_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_1_org run_2_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_2_org run_2_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_alternative_3_org run_2_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_cluster run_2_srafile_3_date run_2_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_md5 run_2_srafile_3_semantic_name run_2_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_sratoolkit run_2_srafile_3_supertype run_2_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_3_version run_2_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_1_org run_2_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_2_org run_2_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_alternative_3_org run_2_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_cluster run_2_srafile_4_date run_2_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_md5 run_2_srafile_4_semantic_name run_2_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_sratoolkit run_2_srafile_4_supertype run_2_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_4_version run_2_srafile_5_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_1_org run_2_srafile_5_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_2_org run_2_srafile_5_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_alternative_3_org run_2_srafile_5_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_cluster run_2_srafile_5_date run_2_srafile_5_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_md5 run_2_srafile_5_semantic_name run_2_srafile_5_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_sratoolkit run_2_srafile_5_supertype run_2_srafile_5_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_5_version run_2_srafile_6_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_1_org run_2_srafile_6_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_2_org run_2_srafile_6_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_alternative_3_org run_2_srafile_6_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_cluster run_2_srafile_6_date run_2_srafile_6_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_md5 run_2_srafile_6_semantic_name run_2_srafile_6_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_sratoolkit run_2_srafile_6_supertype run_2_srafile_6_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_srafile_6_version run_2_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_total_base_count run_2_total_base_cs_native run_2_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_2_total_spots run_30_accession run_30_alias run_30_base_A_count  \\\\\\n\",\n       \"0                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"1                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"2                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"3                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"4                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"..                ...              ...          ...                 ...   \\n\",\n       \"495              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"496              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"497              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"498              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"499              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_base_C_count run_30_base_G_count run_30_base_N_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_base_T_count run_30_cloudfile_1_filetype  \\\\\\n\",\n       \"0                  <NA>                        <NA>   \\n\",\n       \"1                  <NA>                        <NA>   \\n\",\n       \"2                  <NA>                        <NA>   \\n\",\n       \"3                  <NA>                        <NA>   \\n\",\n       \"4                  <NA>                        <NA>   \\n\",\n       \"..                  ...                         ...   \\n\",\n       \"495                <NA>                        <NA>   \\n\",\n       \"496                <NA>                        <NA>   \\n\",\n       \"497                <NA>                        <NA>   \\n\",\n       \"498                <NA>                        <NA>   \\n\",\n       \"499                <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_1_location run_30_cloudfile_1_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_2_filetype run_30_cloudfile_2_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_2_provider run_30_cloudfile_3_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_3_location run_30_cloudfile_3_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_4_filetype run_30_cloudfile_4_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_cloudfile_4_provider run_30_cluster_name run_30_database_1  \\\\\\n\",\n       \"0                          <NA>                <NA>              <NA>   \\n\",\n       \"1                          <NA>                <NA>              <NA>   \\n\",\n       \"2                          <NA>                <NA>              <NA>   \\n\",\n       \"3                          <NA>                <NA>              <NA>   \\n\",\n       \"4                          <NA>                <NA>              <NA>   \\n\",\n       \"..                          ...                 ...               ...   \\n\",\n       \"495                        <NA>                <NA>              <NA>   \\n\",\n       \"496                        <NA>                <NA>              <NA>   \\n\",\n       \"497                        <NA>                <NA>              <NA>   \\n\",\n       \"498                        <NA>                <NA>              <NA>   \\n\",\n       \"499                        <NA>                <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_has_taxanalysis run_30_is_public run_30_load_done run_30_published  \\\\\\n\",\n       \"0                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"1                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"2                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"3                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"4                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"..                     ...              ...              ...              ...   \\n\",\n       \"495                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"496                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"497                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"498                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"499                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_size run_30_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0          <NA>                                       <NA>   \\n\",\n       \"1          <NA>                                       <NA>   \\n\",\n       \"2          <NA>                                       <NA>   \\n\",\n       \"3          <NA>                                       <NA>   \\n\",\n       \"4          <NA>                                       <NA>   \\n\",\n       \"..          ...                                        ...   \\n\",\n       \"495        <NA>                                       <NA>   \\n\",\n       \"496        <NA>                                       <NA>   \\n\",\n       \"497        <NA>                                       <NA>   \\n\",\n       \"498        <NA>                                       <NA>   \\n\",\n       \"499        <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_alternative_1_org run_30_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_cluster run_30_srafile_1_date run_30_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_md5 run_30_srafile_1_semantic_name run_30_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_sratoolkit run_30_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_1_version run_30_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_alternative_1_org run_30_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_cluster run_30_srafile_2_date run_30_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_md5 run_30_srafile_2_semantic_name run_30_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_sratoolkit run_30_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_2_url run_30_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_1_org run_30_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_2_org run_30_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_alternative_3_org run_30_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_cluster run_30_srafile_3_date run_30_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_md5 run_30_srafile_3_semantic_name run_30_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_sratoolkit run_30_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_3_url run_30_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_1_org run_30_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_2_org run_30_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_alternative_3_org run_30_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_cluster run_30_srafile_4_date run_30_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_md5 run_30_srafile_4_semantic_name run_30_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_sratoolkit run_30_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_srafile_4_url run_30_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_static_data_available run_30_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_30_total_base_cs_native run_30_total_bases run_30_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_accession run_31_alias run_31_base_A_count run_31_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_base_G_count run_31_base_N_count run_31_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_1_filetype run_31_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_1_provider run_31_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_2_location run_31_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_3_filetype run_31_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_3_provider run_31_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cloudfile_4_location run_31_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_cluster_name run_31_database_1 run_31_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_is_public run_31_load_done run_31_published run_31_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_alternative_1_org run_31_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_cluster run_31_srafile_1_date run_31_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_md5 run_31_srafile_1_semantic_name run_31_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_sratoolkit run_31_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_1_version run_31_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_alternative_1_org run_31_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_cluster run_31_srafile_2_date run_31_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_md5 run_31_srafile_2_semantic_name run_31_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_sratoolkit run_31_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_2_url run_31_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_1_org run_31_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_2_org run_31_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_alternative_3_org run_31_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_cluster run_31_srafile_3_date run_31_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_md5 run_31_srafile_3_semantic_name run_31_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_sratoolkit run_31_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_3_url run_31_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_1_org run_31_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_2_org run_31_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_alternative_3_org run_31_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_cluster run_31_srafile_4_date run_31_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_md5 run_31_srafile_4_semantic_name run_31_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_sratoolkit run_31_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_srafile_4_url run_31_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_static_data_available run_31_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_31_total_base_cs_native run_31_total_bases run_31_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_accession run_32_alias run_32_base_A_count run_32_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_base_G_count run_32_base_N_count run_32_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_1_filetype run_32_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_1_provider run_32_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_2_location run_32_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_3_filetype run_32_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_3_provider run_32_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cloudfile_4_location run_32_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_cluster_name run_32_database_1 run_32_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_is_public run_32_load_done run_32_published run_32_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_alternative_1_org run_32_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_cluster run_32_srafile_1_date run_32_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_md5 run_32_srafile_1_semantic_name run_32_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_sratoolkit run_32_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_1_version run_32_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_alternative_1_org run_32_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_cluster run_32_srafile_2_date run_32_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_md5 run_32_srafile_2_semantic_name run_32_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_sratoolkit run_32_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_2_url run_32_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_1_org run_32_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_2_org run_32_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_alternative_3_org run_32_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_cluster run_32_srafile_3_date run_32_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_md5 run_32_srafile_3_semantic_name run_32_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_sratoolkit run_32_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_3_url run_32_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_1_org run_32_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_2_org run_32_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_alternative_3_org run_32_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_cluster run_32_srafile_4_date run_32_srafile_4_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_md5 run_32_srafile_4_semantic_name run_32_srafile_4_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_sratoolkit run_32_srafile_4_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_srafile_4_url run_32_srafile_4_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_static_data_available run_32_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_32_total_base_cs_native run_32_total_bases run_32_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_accession run_33_alias run_33_base_A_count run_33_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_base_G_count run_33_base_N_count run_33_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_1_filetype run_33_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_1_provider run_33_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_2_location run_33_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_3_filetype run_33_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_3_provider run_33_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cloudfile_4_location run_33_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_cluster_name run_33_database_1 run_33_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_is_public run_33_load_done run_33_published run_33_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_alternative_1_org run_33_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_cluster run_33_srafile_1_date run_33_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_md5 run_33_srafile_1_semantic_name run_33_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_sratoolkit run_33_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_1_version run_33_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_alternative_1_org run_33_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_cluster run_33_srafile_2_date run_33_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_md5 run_33_srafile_2_semantic_name run_33_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_sratoolkit run_33_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_2_url run_33_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_1_org run_33_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_2_org run_33_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_alternative_3_org run_33_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_cluster run_33_srafile_3_date run_33_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_md5 run_33_srafile_3_semantic_name run_33_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_sratoolkit run_33_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_srafile_3_url run_33_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_static_data_available run_33_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_33_total_base_cs_native run_33_total_bases run_33_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_accession run_34_alias run_34_base_A_count run_34_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_base_G_count run_34_base_N_count run_34_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_1_filetype run_34_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_1_provider run_34_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_2_location run_34_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_3_filetype run_34_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_3_provider run_34_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cloudfile_4_location run_34_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_cluster_name run_34_database_1 run_34_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_is_public run_34_load_done run_34_published run_34_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_alternative_1_org run_34_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_cluster run_34_srafile_1_date run_34_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_md5 run_34_srafile_1_semantic_name run_34_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_sratoolkit run_34_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_1_version run_34_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_alternative_1_org run_34_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_cluster run_34_srafile_2_date run_34_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_md5 run_34_srafile_2_semantic_name run_34_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_sratoolkit run_34_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_2_url run_34_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_1_org run_34_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_2_org run_34_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_alternative_3_org run_34_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_cluster run_34_srafile_3_date run_34_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_md5 run_34_srafile_3_semantic_name run_34_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_sratoolkit run_34_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_srafile_3_url run_34_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_static_data_available run_34_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_34_total_base_cs_native run_34_total_bases run_34_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_accession run_35_alias run_35_base_A_count run_35_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_base_G_count run_35_base_N_count run_35_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_1_filetype run_35_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_1_provider run_35_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_2_location run_35_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_3_filetype run_35_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_3_provider run_35_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cloudfile_4_location run_35_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_cluster_name run_35_database_1 run_35_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_is_public run_35_load_done run_35_published run_35_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_alternative_1_org run_35_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_cluster run_35_srafile_1_date run_35_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_md5 run_35_srafile_1_semantic_name run_35_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_sratoolkit run_35_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_1_version run_35_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_alternative_1_org run_35_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_cluster run_35_srafile_2_date run_35_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_md5 run_35_srafile_2_semantic_name run_35_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_sratoolkit run_35_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_2_url run_35_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_1_org run_35_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_2_org run_35_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_alternative_3_org run_35_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_cluster run_35_srafile_3_date run_35_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_md5 run_35_srafile_3_semantic_name run_35_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_sratoolkit run_35_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_srafile_3_url run_35_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_static_data_available run_35_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_35_total_base_cs_native run_35_total_bases run_35_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_accession run_36_alias run_36_base_A_count run_36_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_base_G_count run_36_base_N_count run_36_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_1_filetype run_36_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_1_provider run_36_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_2_location run_36_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_3_filetype run_36_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_3_provider run_36_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cloudfile_4_location run_36_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_cluster_name run_36_database_1 run_36_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_is_public run_36_load_done run_36_published run_36_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_alternative_1_org run_36_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_cluster run_36_srafile_1_date run_36_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_md5 run_36_srafile_1_semantic_name run_36_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_sratoolkit run_36_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_1_version run_36_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_alternative_1_org run_36_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_cluster run_36_srafile_2_date run_36_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_md5 run_36_srafile_2_semantic_name run_36_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_sratoolkit run_36_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_2_url run_36_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_1_org run_36_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_2_org run_36_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_alternative_3_org run_36_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_cluster run_36_srafile_3_date run_36_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_md5 run_36_srafile_3_semantic_name run_36_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_sratoolkit run_36_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_srafile_3_url run_36_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_static_data_available run_36_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_36_total_base_cs_native run_36_total_bases run_36_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_accession run_37_alias run_37_base_A_count run_37_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_base_G_count run_37_base_N_count run_37_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_1_filetype run_37_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_1_provider run_37_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_2_location run_37_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_3_filetype run_37_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_3_provider run_37_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cloudfile_4_location run_37_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_cluster_name run_37_database_1 run_37_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_is_public run_37_load_done run_37_published run_37_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_alternative_1_org run_37_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_cluster run_37_srafile_1_date run_37_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_md5 run_37_srafile_1_semantic_name run_37_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_sratoolkit run_37_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_1_version run_37_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_alternative_1_org run_37_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_cluster run_37_srafile_2_date run_37_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_md5 run_37_srafile_2_semantic_name run_37_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_sratoolkit run_37_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_2_url run_37_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_1_org run_37_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_2_org run_37_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_alternative_3_org run_37_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_cluster run_37_srafile_3_date run_37_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_md5 run_37_srafile_3_semantic_name run_37_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_sratoolkit run_37_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_srafile_3_url run_37_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_static_data_available run_37_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_37_total_base_cs_native run_37_total_bases run_37_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_accession run_38_alias run_38_base_A_count run_38_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_base_G_count run_38_base_N_count run_38_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_1_filetype run_38_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_1_provider run_38_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_2_location run_38_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_3_filetype run_38_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_3_provider run_38_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cloudfile_4_location run_38_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_cluster_name run_38_database_1 run_38_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_is_public run_38_load_done run_38_published run_38_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_alternative_1_org run_38_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_cluster run_38_srafile_1_date run_38_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_md5 run_38_srafile_1_semantic_name run_38_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_sratoolkit run_38_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_1_version run_38_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_alternative_1_org run_38_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_cluster run_38_srafile_2_date run_38_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_md5 run_38_srafile_2_semantic_name run_38_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_sratoolkit run_38_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_2_url run_38_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_1_org run_38_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_2_org run_38_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_alternative_3_org run_38_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_cluster run_38_srafile_3_date run_38_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_md5 run_38_srafile_3_semantic_name run_38_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_sratoolkit run_38_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_srafile_3_url run_38_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_static_data_available run_38_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_38_total_base_cs_native run_38_total_bases run_38_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_accession run_39_alias run_39_base_A_count run_39_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_base_G_count run_39_base_N_count run_39_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_1_filetype run_39_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_1_provider run_39_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_2_location run_39_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_3_filetype run_39_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_3_provider run_39_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cloudfile_4_location run_39_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_cluster_name run_39_database_1 run_39_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_is_public run_39_load_done run_39_published run_39_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_alternative_1_org run_39_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_cluster run_39_srafile_1_date run_39_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_md5 run_39_srafile_1_semantic_name run_39_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_sratoolkit run_39_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_1_version run_39_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_alternative_1_org run_39_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_cluster run_39_srafile_2_date run_39_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_md5 run_39_srafile_2_semantic_name run_39_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_sratoolkit run_39_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_2_url run_39_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_1_org run_39_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_2_org run_39_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_alternative_3_org run_39_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_cluster run_39_srafile_3_date run_39_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_md5 run_39_srafile_3_semantic_name run_39_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_sratoolkit run_39_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_srafile_3_url run_39_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_static_data_available run_39_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_39_total_base_cs_native run_39_total_bases run_39_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_accession run_3_alias run_3_base_A_count run_3_base_C_count  \\\\\\n\",\n       \"0              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"1              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"2              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"3              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"4              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"..              ...         ...                ...                ...   \\n\",\n       \"495            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"496            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"497            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"498            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"499            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_base_G_count run_3_base_N_count run_3_base_T_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_1_filetype run_3_cloudfile_1_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_1_provider run_3_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_2_location run_3_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_3_filetype run_3_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_3_provider run_3_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_cloudfile_4_location run_3_cloudfile_4_provider run_3_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_database_1 run_3_has_taxanalysis run_3_is_public run_3_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_published run_3_size run_3_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_alternative_1_org run_3_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_alternative_2_org run_3_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_cluster run_3_srafile_1_date run_3_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_md5 run_3_srafile_1_semantic_name run_3_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_sratoolkit run_3_srafile_1_supertype run_3_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_1_version run_3_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_alternative_1_org run_3_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_alternative_2_org run_3_srafile_2_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_cluster run_3_srafile_2_date run_3_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_md5 run_3_srafile_2_semantic_name run_3_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_sratoolkit run_3_srafile_2_supertype run_3_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_2_version run_3_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_1_org run_3_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_2_org run_3_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_alternative_3_org run_3_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_cluster run_3_srafile_3_date run_3_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_md5 run_3_srafile_3_semantic_name run_3_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_sratoolkit run_3_srafile_3_supertype run_3_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_3_version run_3_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_1_org run_3_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_2_org run_3_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_alternative_3_org run_3_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_cluster run_3_srafile_4_date run_3_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_md5 run_3_srafile_4_semantic_name run_3_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_sratoolkit run_3_srafile_4_supertype run_3_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_4_version run_3_srafile_5_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_1_org run_3_srafile_5_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_2_org run_3_srafile_5_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_alternative_3_org run_3_srafile_5_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_cluster run_3_srafile_5_date run_3_srafile_5_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_md5 run_3_srafile_5_semantic_name run_3_srafile_5_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_sratoolkit run_3_srafile_5_supertype run_3_srafile_5_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_5_version run_3_srafile_6_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_1_org run_3_srafile_6_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_2_org run_3_srafile_6_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_alternative_3_org run_3_srafile_6_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_cluster run_3_srafile_6_date run_3_srafile_6_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_md5 run_3_srafile_6_semantic_name run_3_srafile_6_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_sratoolkit run_3_srafile_6_supertype run_3_srafile_6_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_srafile_6_version run_3_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_total_base_count run_3_total_base_cs_native run_3_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_3_total_spots run_40_accession run_40_alias run_40_base_A_count  \\\\\\n\",\n       \"0                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"1                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"2                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"3                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"4                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"..                ...              ...          ...                 ...   \\n\",\n       \"495              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"496              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"497              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"498              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"499              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_base_C_count run_40_base_G_count run_40_base_N_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_base_T_count run_40_cloudfile_1_filetype  \\\\\\n\",\n       \"0                  <NA>                        <NA>   \\n\",\n       \"1                  <NA>                        <NA>   \\n\",\n       \"2                  <NA>                        <NA>   \\n\",\n       \"3                  <NA>                        <NA>   \\n\",\n       \"4                  <NA>                        <NA>   \\n\",\n       \"..                  ...                         ...   \\n\",\n       \"495                <NA>                        <NA>   \\n\",\n       \"496                <NA>                        <NA>   \\n\",\n       \"497                <NA>                        <NA>   \\n\",\n       \"498                <NA>                        <NA>   \\n\",\n       \"499                <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_1_location run_40_cloudfile_1_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_2_filetype run_40_cloudfile_2_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_2_provider run_40_cloudfile_3_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_3_location run_40_cloudfile_3_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_4_filetype run_40_cloudfile_4_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_cloudfile_4_provider run_40_cluster_name run_40_database_1  \\\\\\n\",\n       \"0                          <NA>                <NA>              <NA>   \\n\",\n       \"1                          <NA>                <NA>              <NA>   \\n\",\n       \"2                          <NA>                <NA>              <NA>   \\n\",\n       \"3                          <NA>                <NA>              <NA>   \\n\",\n       \"4                          <NA>                <NA>              <NA>   \\n\",\n       \"..                          ...                 ...               ...   \\n\",\n       \"495                        <NA>                <NA>              <NA>   \\n\",\n       \"496                        <NA>                <NA>              <NA>   \\n\",\n       \"497                        <NA>                <NA>              <NA>   \\n\",\n       \"498                        <NA>                <NA>              <NA>   \\n\",\n       \"499                        <NA>                <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_has_taxanalysis run_40_is_public run_40_load_done run_40_published  \\\\\\n\",\n       \"0                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"1                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"2                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"3                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"4                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"..                     ...              ...              ...              ...   \\n\",\n       \"495                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"496                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"497                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"498                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"499                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_size run_40_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0          <NA>                                       <NA>   \\n\",\n       \"1          <NA>                                       <NA>   \\n\",\n       \"2          <NA>                                       <NA>   \\n\",\n       \"3          <NA>                                       <NA>   \\n\",\n       \"4          <NA>                                       <NA>   \\n\",\n       \"..          ...                                        ...   \\n\",\n       \"495        <NA>                                       <NA>   \\n\",\n       \"496        <NA>                                       <NA>   \\n\",\n       \"497        <NA>                                       <NA>   \\n\",\n       \"498        <NA>                                       <NA>   \\n\",\n       \"499        <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_alternative_1_org run_40_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_cluster run_40_srafile_1_date run_40_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_md5 run_40_srafile_1_semantic_name run_40_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_sratoolkit run_40_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_1_version run_40_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_alternative_1_org run_40_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_cluster run_40_srafile_2_date run_40_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_md5 run_40_srafile_2_semantic_name run_40_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_sratoolkit run_40_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_2_url run_40_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_1_org run_40_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_2_org run_40_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_alternative_3_org run_40_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_cluster run_40_srafile_3_date run_40_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_md5 run_40_srafile_3_semantic_name run_40_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_sratoolkit run_40_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_srafile_3_url run_40_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_static_data_available run_40_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_40_total_base_cs_native run_40_total_bases run_40_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_accession run_41_alias run_41_base_A_count run_41_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_base_G_count run_41_base_N_count run_41_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_1_filetype run_41_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_1_provider run_41_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_2_location run_41_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_3_filetype run_41_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_3_provider run_41_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cloudfile_4_location run_41_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_cluster_name run_41_database_1 run_41_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_is_public run_41_load_done run_41_published run_41_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_alternative_1_org run_41_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_cluster run_41_srafile_1_date run_41_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_md5 run_41_srafile_1_semantic_name run_41_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_sratoolkit run_41_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_1_version run_41_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_alternative_1_org run_41_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_cluster run_41_srafile_2_date run_41_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_md5 run_41_srafile_2_semantic_name run_41_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_sratoolkit run_41_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_2_url run_41_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_1_org run_41_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_2_org run_41_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_alternative_3_org run_41_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_cluster run_41_srafile_3_date run_41_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_md5 run_41_srafile_3_semantic_name run_41_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_sratoolkit run_41_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_srafile_3_url run_41_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_static_data_available run_41_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_41_total_base_cs_native run_41_total_bases run_41_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_accession run_42_alias run_42_base_A_count run_42_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_base_G_count run_42_base_N_count run_42_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_1_filetype run_42_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_1_provider run_42_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_2_location run_42_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_3_filetype run_42_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_3_provider run_42_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cloudfile_4_location run_42_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_cluster_name run_42_database_1 run_42_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_is_public run_42_load_done run_42_published run_42_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_alternative_1_org run_42_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_cluster run_42_srafile_1_date run_42_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_md5 run_42_srafile_1_semantic_name run_42_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_sratoolkit run_42_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_1_version run_42_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_alternative_1_org run_42_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_cluster run_42_srafile_2_date run_42_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_md5 run_42_srafile_2_semantic_name run_42_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_sratoolkit run_42_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_2_url run_42_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_1_org run_42_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_2_org run_42_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_alternative_3_org run_42_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_cluster run_42_srafile_3_date run_42_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_md5 run_42_srafile_3_semantic_name run_42_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_sratoolkit run_42_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_srafile_3_url run_42_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_static_data_available run_42_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_42_total_base_cs_native run_42_total_bases run_42_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_accession run_43_alias run_43_base_A_count run_43_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_base_G_count run_43_base_N_count run_43_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_1_filetype run_43_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_1_provider run_43_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_2_location run_43_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_3_filetype run_43_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_3_provider run_43_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cloudfile_4_location run_43_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_cluster_name run_43_database_1 run_43_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_is_public run_43_load_done run_43_published run_43_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_alternative_1_org run_43_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_cluster run_43_srafile_1_date run_43_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_md5 run_43_srafile_1_semantic_name run_43_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_sratoolkit run_43_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_1_version run_43_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_alternative_1_org run_43_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_cluster run_43_srafile_2_date run_43_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_md5 run_43_srafile_2_semantic_name run_43_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_sratoolkit run_43_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_2_url run_43_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_1_org run_43_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_2_org run_43_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_alternative_3_org run_43_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_cluster run_43_srafile_3_date run_43_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_md5 run_43_srafile_3_semantic_name run_43_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_sratoolkit run_43_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_srafile_3_url run_43_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_static_data_available run_43_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_43_total_base_cs_native run_43_total_bases run_43_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_accession run_44_alias run_44_base_A_count run_44_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_base_G_count run_44_base_N_count run_44_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_1_filetype run_44_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_1_provider run_44_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_2_location run_44_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_3_filetype run_44_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_3_provider run_44_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cloudfile_4_location run_44_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_cluster_name run_44_database_1 run_44_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_is_public run_44_load_done run_44_published run_44_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_alternative_1_org run_44_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_cluster run_44_srafile_1_date run_44_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_md5 run_44_srafile_1_semantic_name run_44_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_sratoolkit run_44_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_1_version run_44_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_alternative_1_org run_44_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_cluster run_44_srafile_2_date run_44_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_md5 run_44_srafile_2_semantic_name run_44_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_sratoolkit run_44_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_2_url run_44_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_1_org run_44_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_2_org run_44_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_alternative_3_org run_44_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_cluster run_44_srafile_3_date run_44_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_md5 run_44_srafile_3_semantic_name run_44_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_sratoolkit run_44_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_srafile_3_url run_44_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_static_data_available run_44_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_44_total_base_cs_native run_44_total_bases run_44_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_accession run_45_alias run_45_base_A_count run_45_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_base_G_count run_45_base_N_count run_45_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_1_filetype run_45_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_1_provider run_45_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_2_location run_45_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_3_filetype run_45_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_3_provider run_45_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cloudfile_4_location run_45_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_cluster_name run_45_database_1 run_45_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_is_public run_45_load_done run_45_published run_45_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_alternative_1_org run_45_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_cluster run_45_srafile_1_date run_45_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_md5 run_45_srafile_1_semantic_name run_45_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_sratoolkit run_45_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_1_version run_45_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_alternative_1_org run_45_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_cluster run_45_srafile_2_date run_45_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_md5 run_45_srafile_2_semantic_name run_45_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_sratoolkit run_45_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_2_url run_45_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_1_org run_45_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_2_org run_45_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_alternative_3_org run_45_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_cluster run_45_srafile_3_date run_45_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_md5 run_45_srafile_3_semantic_name run_45_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_sratoolkit run_45_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_srafile_3_url run_45_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_static_data_available run_45_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_45_total_base_cs_native run_45_total_bases run_45_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_accession run_46_alias run_46_base_A_count run_46_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_base_G_count run_46_base_N_count run_46_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_1_filetype run_46_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_1_provider run_46_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_2_location run_46_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_3_filetype run_46_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_3_provider run_46_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cloudfile_4_location run_46_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_cluster_name run_46_database_1 run_46_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_is_public run_46_load_done run_46_published run_46_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_alternative_1_org run_46_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_cluster run_46_srafile_1_date run_46_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_md5 run_46_srafile_1_semantic_name run_46_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_sratoolkit run_46_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_1_version run_46_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_alternative_1_org run_46_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_cluster run_46_srafile_2_date run_46_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_md5 run_46_srafile_2_semantic_name run_46_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_sratoolkit run_46_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_2_url run_46_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_1_org run_46_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_2_org run_46_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_alternative_3_org run_46_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_cluster run_46_srafile_3_date run_46_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_md5 run_46_srafile_3_semantic_name run_46_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_sratoolkit run_46_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_srafile_3_url run_46_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_static_data_available run_46_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_46_total_base_cs_native run_46_total_bases run_46_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_accession run_47_alias run_47_base_A_count run_47_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_base_G_count run_47_base_N_count run_47_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_1_filetype run_47_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_1_provider run_47_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_2_location run_47_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_3_filetype run_47_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_3_provider run_47_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cloudfile_4_location run_47_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_cluster_name run_47_database_1 run_47_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_is_public run_47_load_done run_47_published run_47_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_alternative_1_org run_47_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_cluster run_47_srafile_1_date run_47_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_md5 run_47_srafile_1_semantic_name run_47_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_sratoolkit run_47_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_1_version run_47_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_alternative_1_org run_47_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_cluster run_47_srafile_2_date run_47_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_md5 run_47_srafile_2_semantic_name run_47_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_sratoolkit run_47_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_2_url run_47_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_1_org run_47_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_2_org run_47_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_alternative_3_org run_47_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_cluster run_47_srafile_3_date run_47_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_md5 run_47_srafile_3_semantic_name run_47_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_sratoolkit run_47_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_srafile_3_url run_47_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_static_data_available run_47_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_47_total_base_cs_native run_47_total_bases run_47_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_accession run_48_alias run_48_base_A_count run_48_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_base_G_count run_48_base_N_count run_48_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_1_filetype run_48_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_1_provider run_48_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_2_location run_48_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_3_filetype run_48_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_3_provider run_48_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cloudfile_4_location run_48_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_cluster_name run_48_database_1 run_48_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_is_public run_48_load_done run_48_published run_48_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_alternative_1_org run_48_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_cluster run_48_srafile_1_date run_48_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_md5 run_48_srafile_1_semantic_name run_48_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_sratoolkit run_48_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_1_version run_48_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_alternative_1_org run_48_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_cluster run_48_srafile_2_date run_48_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_md5 run_48_srafile_2_semantic_name run_48_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_sratoolkit run_48_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_2_url run_48_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_1_org run_48_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_2_org run_48_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_alternative_3_org run_48_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_cluster run_48_srafile_3_date run_48_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_md5 run_48_srafile_3_semantic_name run_48_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_sratoolkit run_48_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_srafile_3_url run_48_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_static_data_available run_48_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_48_total_base_cs_native run_48_total_bases run_48_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_accession run_49_alias run_49_base_A_count run_49_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_base_G_count run_49_base_N_count run_49_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_1_filetype run_49_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_1_provider run_49_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_2_location run_49_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_3_filetype run_49_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_3_provider run_49_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cloudfile_4_location run_49_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_cluster_name run_49_database_1 run_49_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_is_public run_49_load_done run_49_published run_49_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_alternative_1_org run_49_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_cluster run_49_srafile_1_date run_49_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_md5 run_49_srafile_1_semantic_name run_49_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_sratoolkit run_49_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_1_version run_49_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_alternative_1_org run_49_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_cluster run_49_srafile_2_date run_49_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_md5 run_49_srafile_2_semantic_name run_49_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_sratoolkit run_49_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_2_url run_49_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_1_org run_49_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_2_org run_49_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_alternative_3_org run_49_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_cluster run_49_srafile_3_date run_49_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_md5 run_49_srafile_3_semantic_name run_49_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_sratoolkit run_49_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_srafile_3_url run_49_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_static_data_available run_49_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_49_total_base_cs_native run_49_total_bases run_49_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_accession run_4_alias run_4_base_A_count run_4_base_C_count  \\\\\\n\",\n       \"0              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"1              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"2              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"3              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"4              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"..              ...         ...                ...                ...   \\n\",\n       \"495            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"496            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"497            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"498            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"499            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_base_G_count run_4_base_N_count run_4_base_T_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_1_filetype run_4_cloudfile_1_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_1_provider run_4_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_2_location run_4_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_3_filetype run_4_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_3_provider run_4_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_cloudfile_4_location run_4_cloudfile_4_provider run_4_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_database_1 run_4_has_taxanalysis run_4_is_public run_4_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_published run_4_size run_4_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_1_org run_4_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_2_org run_4_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_alternative_3_org run_4_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_cluster run_4_srafile_1_date run_4_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_md5 run_4_srafile_1_semantic_name run_4_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_sratoolkit run_4_srafile_1_supertype run_4_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_1_version run_4_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_alternative_1_org run_4_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_alternative_2_org run_4_srafile_2_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_cluster run_4_srafile_2_date run_4_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_md5 run_4_srafile_2_semantic_name run_4_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_sratoolkit run_4_srafile_2_supertype run_4_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_2_version run_4_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_1_org run_4_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_2_org run_4_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_alternative_3_org run_4_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_cluster run_4_srafile_3_date run_4_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_md5 run_4_srafile_3_semantic_name run_4_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_sratoolkit run_4_srafile_3_supertype run_4_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_3_version run_4_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_1_org run_4_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_2_org run_4_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_alternative_3_org run_4_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_cluster run_4_srafile_4_date run_4_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_md5 run_4_srafile_4_semantic_name run_4_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_sratoolkit run_4_srafile_4_supertype run_4_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_4_version run_4_srafile_5_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_1_org run_4_srafile_5_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_2_org run_4_srafile_5_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_alternative_3_org run_4_srafile_5_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_cluster run_4_srafile_5_date run_4_srafile_5_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_md5 run_4_srafile_5_semantic_name run_4_srafile_5_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_sratoolkit run_4_srafile_5_supertype run_4_srafile_5_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_5_version run_4_srafile_6_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_1_org run_4_srafile_6_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_2_org run_4_srafile_6_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_alternative_3_org run_4_srafile_6_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_cluster run_4_srafile_6_date run_4_srafile_6_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_md5 run_4_srafile_6_semantic_name run_4_srafile_6_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_sratoolkit run_4_srafile_6_supertype run_4_srafile_6_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_srafile_6_version run_4_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_total_base_count run_4_total_base_cs_native run_4_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_4_total_spots run_50_accession run_50_alias run_50_base_A_count  \\\\\\n\",\n       \"0                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"1                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"2                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"3                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"4                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"..                ...              ...          ...                 ...   \\n\",\n       \"495              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"496              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"497              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"498              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"499              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_base_C_count run_50_base_G_count run_50_base_N_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_base_T_count run_50_cloudfile_1_filetype  \\\\\\n\",\n       \"0                  <NA>                        <NA>   \\n\",\n       \"1                  <NA>                        <NA>   \\n\",\n       \"2                  <NA>                        <NA>   \\n\",\n       \"3                  <NA>                        <NA>   \\n\",\n       \"4                  <NA>                        <NA>   \\n\",\n       \"..                  ...                         ...   \\n\",\n       \"495                <NA>                        <NA>   \\n\",\n       \"496                <NA>                        <NA>   \\n\",\n       \"497                <NA>                        <NA>   \\n\",\n       \"498                <NA>                        <NA>   \\n\",\n       \"499                <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_1_location run_50_cloudfile_1_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_2_filetype run_50_cloudfile_2_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_2_provider run_50_cloudfile_3_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_3_location run_50_cloudfile_3_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_4_filetype run_50_cloudfile_4_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_cloudfile_4_provider run_50_cluster_name run_50_database_1  \\\\\\n\",\n       \"0                          <NA>                <NA>              <NA>   \\n\",\n       \"1                          <NA>                <NA>              <NA>   \\n\",\n       \"2                          <NA>                <NA>              <NA>   \\n\",\n       \"3                          <NA>                <NA>              <NA>   \\n\",\n       \"4                          <NA>                <NA>              <NA>   \\n\",\n       \"..                          ...                 ...               ...   \\n\",\n       \"495                        <NA>                <NA>              <NA>   \\n\",\n       \"496                        <NA>                <NA>              <NA>   \\n\",\n       \"497                        <NA>                <NA>              <NA>   \\n\",\n       \"498                        <NA>                <NA>              <NA>   \\n\",\n       \"499                        <NA>                <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_has_taxanalysis run_50_is_public run_50_load_done run_50_published  \\\\\\n\",\n       \"0                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"1                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"2                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"3                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"4                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"..                     ...              ...              ...              ...   \\n\",\n       \"495                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"496                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"497                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"498                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"499                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_size run_50_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0          <NA>                                       <NA>   \\n\",\n       \"1          <NA>                                       <NA>   \\n\",\n       \"2          <NA>                                       <NA>   \\n\",\n       \"3          <NA>                                       <NA>   \\n\",\n       \"4          <NA>                                       <NA>   \\n\",\n       \"..          ...                                        ...   \\n\",\n       \"495        <NA>                                       <NA>   \\n\",\n       \"496        <NA>                                       <NA>   \\n\",\n       \"497        <NA>                                       <NA>   \\n\",\n       \"498        <NA>                                       <NA>   \\n\",\n       \"499        <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_alternative_1_org run_50_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_cluster run_50_srafile_1_date run_50_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_md5 run_50_srafile_1_semantic_name run_50_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_sratoolkit run_50_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_1_version run_50_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_alternative_1_org run_50_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_cluster run_50_srafile_2_date run_50_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_md5 run_50_srafile_2_semantic_name run_50_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_sratoolkit run_50_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_2_url run_50_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_1_org run_50_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_2_org run_50_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_alternative_3_org run_50_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_cluster run_50_srafile_3_date run_50_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_md5 run_50_srafile_3_semantic_name run_50_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_sratoolkit run_50_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_srafile_3_url run_50_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_static_data_available run_50_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_50_total_base_cs_native run_50_total_bases run_50_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_accession run_51_alias run_51_base_A_count run_51_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_base_G_count run_51_base_N_count run_51_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_1_filetype run_51_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_1_provider run_51_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_2_location run_51_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_3_filetype run_51_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_3_provider run_51_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cloudfile_4_location run_51_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_cluster_name run_51_database_1 run_51_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_is_public run_51_load_done run_51_published run_51_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_alternative_1_org run_51_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_cluster run_51_srafile_1_date run_51_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_md5 run_51_srafile_1_semantic_name run_51_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_sratoolkit run_51_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_1_version run_51_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_alternative_1_org run_51_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_cluster run_51_srafile_2_date run_51_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_md5 run_51_srafile_2_semantic_name run_51_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_sratoolkit run_51_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_2_url run_51_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_1_org run_51_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_2_org run_51_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_alternative_3_org run_51_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_cluster run_51_srafile_3_date run_51_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_md5 run_51_srafile_3_semantic_name run_51_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_sratoolkit run_51_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_srafile_3_url run_51_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_static_data_available run_51_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_51_total_base_cs_native run_51_total_bases run_51_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_accession run_52_alias run_52_base_A_count run_52_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_base_G_count run_52_base_N_count run_52_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_1_filetype run_52_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_1_provider run_52_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_2_location run_52_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_3_filetype run_52_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_3_provider run_52_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cloudfile_4_location run_52_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_cluster_name run_52_database_1 run_52_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_is_public run_52_load_done run_52_published run_52_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_alternative_1_org run_52_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_cluster run_52_srafile_1_date run_52_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_md5 run_52_srafile_1_semantic_name run_52_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_sratoolkit run_52_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_1_version run_52_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_alternative_1_org run_52_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_cluster run_52_srafile_2_date run_52_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_md5 run_52_srafile_2_semantic_name run_52_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_sratoolkit run_52_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_2_url run_52_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_1_org run_52_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_2_org run_52_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_alternative_3_org run_52_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_cluster run_52_srafile_3_date run_52_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_md5 run_52_srafile_3_semantic_name run_52_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_sratoolkit run_52_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_srafile_3_url run_52_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_static_data_available run_52_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_52_total_base_cs_native run_52_total_bases run_52_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_accession run_53_alias run_53_base_A_count run_53_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_base_G_count run_53_base_N_count run_53_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_1_filetype run_53_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_1_provider run_53_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_2_location run_53_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_3_filetype run_53_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_3_provider run_53_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cloudfile_4_location run_53_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_cluster_name run_53_database_1 run_53_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_is_public run_53_load_done run_53_published run_53_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_alternative_1_org run_53_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_cluster run_53_srafile_1_date run_53_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_md5 run_53_srafile_1_semantic_name run_53_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_sratoolkit run_53_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_1_version run_53_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_alternative_1_org run_53_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_cluster run_53_srafile_2_date run_53_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_md5 run_53_srafile_2_semantic_name run_53_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_sratoolkit run_53_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_2_url run_53_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_1_org run_53_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_2_org run_53_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_alternative_3_org run_53_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_cluster run_53_srafile_3_date run_53_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_md5 run_53_srafile_3_semantic_name run_53_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_sratoolkit run_53_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_srafile_3_url run_53_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_static_data_available run_53_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_53_total_base_cs_native run_53_total_bases run_53_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_accession run_54_alias run_54_base_A_count run_54_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_base_G_count run_54_base_N_count run_54_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_1_filetype run_54_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_1_provider run_54_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_2_location run_54_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_3_filetype run_54_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_3_provider run_54_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cloudfile_4_location run_54_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_cluster_name run_54_database_1 run_54_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_is_public run_54_load_done run_54_published run_54_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_alternative_1_org run_54_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_cluster run_54_srafile_1_date run_54_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_md5 run_54_srafile_1_semantic_name run_54_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_sratoolkit run_54_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_1_version run_54_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_alternative_1_org run_54_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_cluster run_54_srafile_2_date run_54_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_md5 run_54_srafile_2_semantic_name run_54_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_sratoolkit run_54_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_2_url run_54_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_1_org run_54_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_2_org run_54_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_alternative_3_org run_54_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_cluster run_54_srafile_3_date run_54_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_md5 run_54_srafile_3_semantic_name run_54_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_sratoolkit run_54_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_srafile_3_url run_54_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_static_data_available run_54_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_54_total_base_cs_native run_54_total_bases run_54_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_accession run_55_alias run_55_base_A_count run_55_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_base_G_count run_55_base_N_count run_55_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_1_filetype run_55_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_1_provider run_55_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_2_location run_55_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_3_filetype run_55_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_3_provider run_55_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cloudfile_4_location run_55_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_cluster_name run_55_database_1 run_55_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_is_public run_55_load_done run_55_published run_55_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_alternative_1_org run_55_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_cluster run_55_srafile_1_date run_55_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_md5 run_55_srafile_1_semantic_name run_55_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_sratoolkit run_55_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_1_version run_55_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_alternative_1_org run_55_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_cluster run_55_srafile_2_date run_55_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_md5 run_55_srafile_2_semantic_name run_55_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_sratoolkit run_55_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_2_url run_55_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_1_org run_55_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_2_org run_55_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_alternative_3_org run_55_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_cluster run_55_srafile_3_date run_55_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_md5 run_55_srafile_3_semantic_name run_55_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_sratoolkit run_55_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_srafile_3_url run_55_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_static_data_available run_55_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_55_total_base_cs_native run_55_total_bases run_55_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_accession run_56_alias run_56_base_A_count run_56_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_base_G_count run_56_base_N_count run_56_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_1_filetype run_56_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_1_provider run_56_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_2_location run_56_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_3_filetype run_56_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_3_provider run_56_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cloudfile_4_location run_56_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_cluster_name run_56_database_1 run_56_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_is_public run_56_load_done run_56_published run_56_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_alternative_1_org run_56_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_cluster run_56_srafile_1_date run_56_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_md5 run_56_srafile_1_semantic_name run_56_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_sratoolkit run_56_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_1_version run_56_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_alternative_1_org run_56_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_cluster run_56_srafile_2_date run_56_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_md5 run_56_srafile_2_semantic_name run_56_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_sratoolkit run_56_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_2_url run_56_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_1_org run_56_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_2_org run_56_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_alternative_3_org run_56_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_cluster run_56_srafile_3_date run_56_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_md5 run_56_srafile_3_semantic_name run_56_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_sratoolkit run_56_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_srafile_3_url run_56_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_static_data_available run_56_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_56_total_base_cs_native run_56_total_bases run_56_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_accession run_57_alias run_57_base_A_count run_57_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_base_G_count run_57_base_N_count run_57_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_1_filetype run_57_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_1_provider run_57_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_2_location run_57_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_3_filetype run_57_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_3_provider run_57_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cloudfile_4_location run_57_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_cluster_name run_57_database_1 run_57_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_is_public run_57_load_done run_57_published run_57_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_alternative_1_org run_57_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_cluster run_57_srafile_1_date run_57_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_md5 run_57_srafile_1_semantic_name run_57_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_sratoolkit run_57_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_1_version run_57_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_alternative_1_org run_57_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_cluster run_57_srafile_2_date run_57_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_md5 run_57_srafile_2_semantic_name run_57_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_sratoolkit run_57_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_2_url run_57_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_1_org run_57_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_2_org run_57_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_alternative_3_org run_57_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_cluster run_57_srafile_3_date run_57_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_md5 run_57_srafile_3_semantic_name run_57_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_sratoolkit run_57_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_srafile_3_url run_57_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_static_data_available run_57_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_57_total_base_cs_native run_57_total_bases run_57_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_accession run_58_alias run_58_base_A_count run_58_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_base_G_count run_58_base_N_count run_58_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_1_filetype run_58_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_1_provider run_58_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_2_location run_58_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_3_filetype run_58_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_3_provider run_58_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cloudfile_4_location run_58_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_cluster_name run_58_database_1 run_58_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_is_public run_58_load_done run_58_published run_58_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_alternative_1_org run_58_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_cluster run_58_srafile_1_date run_58_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_md5 run_58_srafile_1_semantic_name run_58_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_sratoolkit run_58_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_1_version run_58_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_alternative_1_org run_58_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_cluster run_58_srafile_2_date run_58_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_md5 run_58_srafile_2_semantic_name run_58_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_sratoolkit run_58_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_2_url run_58_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_1_org run_58_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_2_org run_58_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_alternative_3_org run_58_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_cluster run_58_srafile_3_date run_58_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_md5 run_58_srafile_3_semantic_name run_58_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_sratoolkit run_58_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_srafile_3_url run_58_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_static_data_available run_58_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_58_total_base_cs_native run_58_total_bases run_58_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_accession run_59_alias run_59_base_A_count run_59_base_C_count  \\\\\\n\",\n       \"0               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"1               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"2               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"3               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"4               <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"..               ...          ...                 ...                 ...   \\n\",\n       \"495             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"496             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"497             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"498             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"499             <NA>         <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_base_G_count run_59_base_N_count run_59_base_T_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_1_filetype run_59_cloudfile_1_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_1_provider run_59_cloudfile_2_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_2_location run_59_cloudfile_2_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_3_filetype run_59_cloudfile_3_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_3_provider run_59_cloudfile_4_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cloudfile_4_location run_59_cloudfile_4_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_cluster_name run_59_database_1 run_59_has_taxanalysis  \\\\\\n\",\n       \"0                  <NA>              <NA>                   <NA>   \\n\",\n       \"1                  <NA>              <NA>                   <NA>   \\n\",\n       \"2                  <NA>              <NA>                   <NA>   \\n\",\n       \"3                  <NA>              <NA>                   <NA>   \\n\",\n       \"4                  <NA>              <NA>                   <NA>   \\n\",\n       \"..                  ...               ...                    ...   \\n\",\n       \"495                <NA>              <NA>                   <NA>   \\n\",\n       \"496                <NA>              <NA>                   <NA>   \\n\",\n       \"497                <NA>              <NA>                   <NA>   \\n\",\n       \"498                <NA>              <NA>                   <NA>   \\n\",\n       \"499                <NA>              <NA>                   <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_is_public run_59_load_done run_59_published run_59_size  \\\\\\n\",\n       \"0               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"1               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"2               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"3               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"4               <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"..               ...              ...              ...         ...   \\n\",\n       \"495             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"496             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"497             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"498             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"499             <NA>             <NA>             <NA>        <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_alternative_1_org run_59_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_cluster run_59_srafile_1_date run_59_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_md5 run_59_srafile_1_semantic_name run_59_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_sratoolkit run_59_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_1_version run_59_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_alternative_1_org run_59_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_cluster run_59_srafile_2_date run_59_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_md5 run_59_srafile_2_semantic_name run_59_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_sratoolkit run_59_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_2_url run_59_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_1_org run_59_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_2_org run_59_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_alternative_3_org run_59_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_cluster run_59_srafile_3_date run_59_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_md5 run_59_srafile_3_semantic_name run_59_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_sratoolkit run_59_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_srafile_3_url run_59_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_static_data_available run_59_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_59_total_base_cs_native run_59_total_bases run_59_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_accession run_5_alias run_5_base_A_count run_5_base_C_count  \\\\\\n\",\n       \"0              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"1              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"2              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"3              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"4              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"..              ...         ...                ...                ...   \\n\",\n       \"495            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"496            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"497            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"498            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"499            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_base_G_count run_5_base_N_count run_5_base_T_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_1_filetype run_5_cloudfile_1_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_1_provider run_5_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_2_location run_5_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_3_filetype run_5_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_3_provider run_5_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_cloudfile_4_location run_5_cloudfile_4_provider run_5_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_database_1 run_5_has_taxanalysis run_5_is_public run_5_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_published run_5_size run_5_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_1_org run_5_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_2_org run_5_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_alternative_3_org run_5_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_cluster run_5_srafile_1_date run_5_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_md5 run_5_srafile_1_semantic_name run_5_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_sratoolkit run_5_srafile_1_supertype run_5_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_1_version run_5_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_alternative_1_org run_5_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_cluster run_5_srafile_2_date run_5_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_md5 run_5_srafile_2_semantic_name run_5_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_sratoolkit run_5_srafile_2_supertype run_5_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_2_version run_5_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_1_org run_5_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_2_org run_5_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_alternative_3_org run_5_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_cluster run_5_srafile_3_date run_5_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_md5 run_5_srafile_3_semantic_name run_5_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_sratoolkit run_5_srafile_3_supertype run_5_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_3_version run_5_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_1_org run_5_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_2_org run_5_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_alternative_3_org run_5_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_cluster run_5_srafile_4_date run_5_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_md5 run_5_srafile_4_semantic_name run_5_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_sratoolkit run_5_srafile_4_supertype run_5_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_4_version run_5_srafile_5_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_alternative_1_org run_5_srafile_5_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_cluster run_5_srafile_5_date run_5_srafile_5_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_md5 run_5_srafile_5_semantic_name run_5_srafile_5_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_sratoolkit run_5_srafile_5_supertype run_5_srafile_5_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_5_version run_5_srafile_6_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_1_org run_5_srafile_6_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_2_org run_5_srafile_6_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_alternative_3_org run_5_srafile_6_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_cluster run_5_srafile_6_date run_5_srafile_6_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_md5 run_5_srafile_6_semantic_name run_5_srafile_6_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_sratoolkit run_5_srafile_6_supertype run_5_srafile_6_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_srafile_6_version run_5_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_total_base_count run_5_total_base_cs_native run_5_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_5_total_spots run_60_accession run_60_alias run_60_base_A_count  \\\\\\n\",\n       \"0                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"1                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"2                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"3                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"4                <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"..                ...              ...          ...                 ...   \\n\",\n       \"495              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"496              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"497              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"498              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"499              <NA>             <NA>         <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_base_C_count run_60_base_G_count run_60_base_N_count  \\\\\\n\",\n       \"0                  <NA>                <NA>                <NA>   \\n\",\n       \"1                  <NA>                <NA>                <NA>   \\n\",\n       \"2                  <NA>                <NA>                <NA>   \\n\",\n       \"3                  <NA>                <NA>                <NA>   \\n\",\n       \"4                  <NA>                <NA>                <NA>   \\n\",\n       \"..                  ...                 ...                 ...   \\n\",\n       \"495                <NA>                <NA>                <NA>   \\n\",\n       \"496                <NA>                <NA>                <NA>   \\n\",\n       \"497                <NA>                <NA>                <NA>   \\n\",\n       \"498                <NA>                <NA>                <NA>   \\n\",\n       \"499                <NA>                <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_base_T_count run_60_cloudfile_1_filetype  \\\\\\n\",\n       \"0                  <NA>                        <NA>   \\n\",\n       \"1                  <NA>                        <NA>   \\n\",\n       \"2                  <NA>                        <NA>   \\n\",\n       \"3                  <NA>                        <NA>   \\n\",\n       \"4                  <NA>                        <NA>   \\n\",\n       \"..                  ...                         ...   \\n\",\n       \"495                <NA>                        <NA>   \\n\",\n       \"496                <NA>                        <NA>   \\n\",\n       \"497                <NA>                        <NA>   \\n\",\n       \"498                <NA>                        <NA>   \\n\",\n       \"499                <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_1_location run_60_cloudfile_1_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_2_filetype run_60_cloudfile_2_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_2_provider run_60_cloudfile_3_filetype  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_3_location run_60_cloudfile_3_provider  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_4_filetype run_60_cloudfile_4_location  \\\\\\n\",\n       \"0                          <NA>                        <NA>   \\n\",\n       \"1                          <NA>                        <NA>   \\n\",\n       \"2                          <NA>                        <NA>   \\n\",\n       \"3                          <NA>                        <NA>   \\n\",\n       \"4                          <NA>                        <NA>   \\n\",\n       \"..                          ...                         ...   \\n\",\n       \"495                        <NA>                        <NA>   \\n\",\n       \"496                        <NA>                        <NA>   \\n\",\n       \"497                        <NA>                        <NA>   \\n\",\n       \"498                        <NA>                        <NA>   \\n\",\n       \"499                        <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_cloudfile_4_provider run_60_cluster_name run_60_database_1  \\\\\\n\",\n       \"0                          <NA>                <NA>              <NA>   \\n\",\n       \"1                          <NA>                <NA>              <NA>   \\n\",\n       \"2                          <NA>                <NA>              <NA>   \\n\",\n       \"3                          <NA>                <NA>              <NA>   \\n\",\n       \"4                          <NA>                <NA>              <NA>   \\n\",\n       \"..                          ...                 ...               ...   \\n\",\n       \"495                        <NA>                <NA>              <NA>   \\n\",\n       \"496                        <NA>                <NA>              <NA>   \\n\",\n       \"497                        <NA>                <NA>              <NA>   \\n\",\n       \"498                        <NA>                <NA>              <NA>   \\n\",\n       \"499                        <NA>                <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_has_taxanalysis run_60_is_public run_60_load_done run_60_published  \\\\\\n\",\n       \"0                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"1                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"2                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"3                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"4                     <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"..                     ...              ...              ...              ...   \\n\",\n       \"495                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"496                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"497                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"498                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"499                   <NA>             <NA>             <NA>             <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_size run_60_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0          <NA>                                       <NA>   \\n\",\n       \"1          <NA>                                       <NA>   \\n\",\n       \"2          <NA>                                       <NA>   \\n\",\n       \"3          <NA>                                       <NA>   \\n\",\n       \"4          <NA>                                       <NA>   \\n\",\n       \"..          ...                                        ...   \\n\",\n       \"495        <NA>                                       <NA>   \\n\",\n       \"496        <NA>                                       <NA>   \\n\",\n       \"497        <NA>                                       <NA>   \\n\",\n       \"498        <NA>                                       <NA>   \\n\",\n       \"499        <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_alternative_1_org run_60_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_cluster run_60_srafile_1_date run_60_srafile_1_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_md5 run_60_srafile_1_semantic_name run_60_srafile_1_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_sratoolkit run_60_srafile_1_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_1_version run_60_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                       <NA>                                       <NA>   \\n\",\n       \"1                       <NA>                                       <NA>   \\n\",\n       \"2                       <NA>                                       <NA>   \\n\",\n       \"3                       <NA>                                       <NA>   \\n\",\n       \"4                       <NA>                                       <NA>   \\n\",\n       \"..                       ...                                        ...   \\n\",\n       \"495                     <NA>                                       <NA>   \\n\",\n       \"496                     <NA>                                       <NA>   \\n\",\n       \"497                     <NA>                                       <NA>   \\n\",\n       \"498                     <NA>                                       <NA>   \\n\",\n       \"499                     <NA>                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_alternative_1_org run_60_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_cluster run_60_srafile_2_date run_60_srafile_2_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_md5 run_60_srafile_2_semantic_name run_60_srafile_2_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_sratoolkit run_60_srafile_2_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_2_url run_60_srafile_2_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_1_org run_60_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_2_org run_60_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                         <NA>   \\n\",\n       \"1                                         <NA>   \\n\",\n       \"2                                         <NA>   \\n\",\n       \"3                                         <NA>   \\n\",\n       \"4                                         <NA>   \\n\",\n       \"..                                         ...   \\n\",\n       \"495                                       <NA>   \\n\",\n       \"496                                       <NA>   \\n\",\n       \"497                                       <NA>   \\n\",\n       \"498                                       <NA>   \\n\",\n       \"499                                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_alternative_3_org run_60_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                 <NA>                               <NA>   \\n\",\n       \"1                                 <NA>                               <NA>   \\n\",\n       \"2                                 <NA>                               <NA>   \\n\",\n       \"3                                 <NA>                               <NA>   \\n\",\n       \"4                                 <NA>                               <NA>   \\n\",\n       \"..                                 ...                                ...   \\n\",\n       \"495                               <NA>                               <NA>   \\n\",\n       \"496                               <NA>                               <NA>   \\n\",\n       \"497                               <NA>                               <NA>   \\n\",\n       \"498                               <NA>                               <NA>   \\n\",\n       \"499                               <NA>                               <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_cluster run_60_srafile_3_date run_60_srafile_3_filename  \\\\\\n\",\n       \"0                       <NA>                  <NA>                      <NA>   \\n\",\n       \"1                       <NA>                  <NA>                      <NA>   \\n\",\n       \"2                       <NA>                  <NA>                      <NA>   \\n\",\n       \"3                       <NA>                  <NA>                      <NA>   \\n\",\n       \"4                       <NA>                  <NA>                      <NA>   \\n\",\n       \"..                       ...                   ...                       ...   \\n\",\n       \"495                     <NA>                  <NA>                      <NA>   \\n\",\n       \"496                     <NA>                  <NA>                      <NA>   \\n\",\n       \"497                     <NA>                  <NA>                      <NA>   \\n\",\n       \"498                     <NA>                  <NA>                      <NA>   \\n\",\n       \"499                     <NA>                  <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_md5 run_60_srafile_3_semantic_name run_60_srafile_3_size  \\\\\\n\",\n       \"0                   <NA>                           <NA>                  <NA>   \\n\",\n       \"1                   <NA>                           <NA>                  <NA>   \\n\",\n       \"2                   <NA>                           <NA>                  <NA>   \\n\",\n       \"3                   <NA>                           <NA>                  <NA>   \\n\",\n       \"4                   <NA>                           <NA>                  <NA>   \\n\",\n       \"..                   ...                            ...                   ...   \\n\",\n       \"495                 <NA>                           <NA>                  <NA>   \\n\",\n       \"496                 <NA>                           <NA>                  <NA>   \\n\",\n       \"497                 <NA>                           <NA>                  <NA>   \\n\",\n       \"498                 <NA>                           <NA>                  <NA>   \\n\",\n       \"499                 <NA>                           <NA>                  <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_sratoolkit run_60_srafile_3_supertype  \\\\\\n\",\n       \"0                          <NA>                       <NA>   \\n\",\n       \"1                          <NA>                       <NA>   \\n\",\n       \"2                          <NA>                       <NA>   \\n\",\n       \"3                          <NA>                       <NA>   \\n\",\n       \"4                          <NA>                       <NA>   \\n\",\n       \"..                          ...                        ...   \\n\",\n       \"495                        <NA>                       <NA>   \\n\",\n       \"496                        <NA>                       <NA>   \\n\",\n       \"497                        <NA>                       <NA>   \\n\",\n       \"498                        <NA>                       <NA>   \\n\",\n       \"499                        <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_srafile_3_url run_60_srafile_3_version  \\\\\\n\",\n       \"0                   <NA>                     <NA>   \\n\",\n       \"1                   <NA>                     <NA>   \\n\",\n       \"2                   <NA>                     <NA>   \\n\",\n       \"3                   <NA>                     <NA>   \\n\",\n       \"4                   <NA>                     <NA>   \\n\",\n       \"..                   ...                      ...   \\n\",\n       \"495                 <NA>                     <NA>   \\n\",\n       \"496                 <NA>                     <NA>   \\n\",\n       \"497                 <NA>                     <NA>   \\n\",\n       \"498                 <NA>                     <NA>   \\n\",\n       \"499                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_static_data_available run_60_total_base_count  \\\\\\n\",\n       \"0                           <NA>                    <NA>   \\n\",\n       \"1                           <NA>                    <NA>   \\n\",\n       \"2                           <NA>                    <NA>   \\n\",\n       \"3                           <NA>                    <NA>   \\n\",\n       \"4                           <NA>                    <NA>   \\n\",\n       \"..                           ...                     ...   \\n\",\n       \"495                         <NA>                    <NA>   \\n\",\n       \"496                         <NA>                    <NA>   \\n\",\n       \"497                         <NA>                    <NA>   \\n\",\n       \"498                         <NA>                    <NA>   \\n\",\n       \"499                         <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    run_60_total_base_cs_native run_60_total_bases run_60_total_spots  \\\\\\n\",\n       \"0                          <NA>               <NA>               <NA>   \\n\",\n       \"1                          <NA>               <NA>               <NA>   \\n\",\n       \"2                          <NA>               <NA>               <NA>   \\n\",\n       \"3                          <NA>               <NA>               <NA>   \\n\",\n       \"4                          <NA>               <NA>               <NA>   \\n\",\n       \"..                          ...                ...                ...   \\n\",\n       \"495                        <NA>               <NA>               <NA>   \\n\",\n       \"496                        <NA>               <NA>               <NA>   \\n\",\n       \"497                        <NA>               <NA>               <NA>   \\n\",\n       \"498                        <NA>               <NA>               <NA>   \\n\",\n       \"499                        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_accession run_6_alias run_6_base_A_count run_6_base_C_count  \\\\\\n\",\n       \"0              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"1              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"2              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"3              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"4              <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"..              ...         ...                ...                ...   \\n\",\n       \"495            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"496            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"497            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"498            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"499            <NA>        <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_base_G_count run_6_base_N_count run_6_base_T_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_1_filetype run_6_cloudfile_1_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_1_provider run_6_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_2_location run_6_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_3_filetype run_6_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_3_provider run_6_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_cloudfile_4_location run_6_cloudfile_4_provider run_6_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_database_1 run_6_has_taxanalysis run_6_is_public run_6_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_published run_6_size run_6_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_alternative_1_org run_6_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_cluster run_6_srafile_1_date run_6_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_md5 run_6_srafile_1_semantic_name run_6_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_sratoolkit run_6_srafile_1_supertype  \\\\\\n\",\n       \"0                         <NA>                      <NA>   \\n\",\n       \"1                         <NA>                      <NA>   \\n\",\n       \"2                         <NA>                      <NA>   \\n\",\n       \"3                         <NA>                      <NA>   \\n\",\n       \"4                         <NA>                      <NA>   \\n\",\n       \"..                         ...                       ...   \\n\",\n       \"495                       <NA>                      <NA>   \\n\",\n       \"496                       <NA>                      <NA>   \\n\",\n       \"497                       <NA>                      <NA>   \\n\",\n       \"498                       <NA>                      <NA>   \\n\",\n       \"499                       <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_1_version run_6_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_alternative_1_org run_6_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_cluster run_6_srafile_2_date run_6_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_md5 run_6_srafile_2_semantic_name run_6_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_sratoolkit run_6_srafile_2_supertype run_6_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_2_version run_6_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_1_org run_6_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_2_org run_6_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_alternative_3_org run_6_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_cluster run_6_srafile_3_date run_6_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_md5 run_6_srafile_3_semantic_name run_6_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_sratoolkit run_6_srafile_3_supertype run_6_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_3_version run_6_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_1_org run_6_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_2_org run_6_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_alternative_3_org run_6_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_cluster run_6_srafile_4_date run_6_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_md5 run_6_srafile_4_semantic_name run_6_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_sratoolkit run_6_srafile_4_supertype run_6_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_srafile_4_version run_6_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_total_base_count run_6_total_base_cs_native run_6_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_6_total_spots run_7_accession run_7_alias run_7_base_A_count  \\\\\\n\",\n       \"0                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"1                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"2                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"3                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"4                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"..                ...             ...         ...                ...   \\n\",\n       \"495              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"496              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"497              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"498              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"499              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_base_C_count run_7_base_G_count run_7_base_N_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_base_T_count run_7_cloudfile_1_filetype run_7_cloudfile_1_location  \\\\\\n\",\n       \"0                 <NA>                       <NA>                       <NA>   \\n\",\n       \"1                 <NA>                       <NA>                       <NA>   \\n\",\n       \"2                 <NA>                       <NA>                       <NA>   \\n\",\n       \"3                 <NA>                       <NA>                       <NA>   \\n\",\n       \"4                 <NA>                       <NA>                       <NA>   \\n\",\n       \"..                 ...                        ...                        ...   \\n\",\n       \"495               <NA>                       <NA>                       <NA>   \\n\",\n       \"496               <NA>                       <NA>                       <NA>   \\n\",\n       \"497               <NA>                       <NA>                       <NA>   \\n\",\n       \"498               <NA>                       <NA>                       <NA>   \\n\",\n       \"499               <NA>                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_cloudfile_1_provider run_7_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_cloudfile_2_location run_7_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_cloudfile_3_filetype run_7_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_cloudfile_3_provider run_7_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_cloudfile_4_location run_7_cloudfile_4_provider run_7_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_database_1 run_7_has_taxanalysis run_7_is_public run_7_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_published run_7_size run_7_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_1_org run_7_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_2_org run_7_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_alternative_3_org run_7_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_cluster run_7_srafile_1_date run_7_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_md5 run_7_srafile_1_semantic_name run_7_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_sratoolkit run_7_srafile_1_supertype run_7_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_1_version run_7_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_alternative_1_org run_7_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_cluster run_7_srafile_2_date run_7_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_md5 run_7_srafile_2_semantic_name run_7_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_sratoolkit run_7_srafile_2_supertype run_7_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_2_version run_7_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_1_org run_7_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_2_org run_7_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_alternative_3_org run_7_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_cluster run_7_srafile_3_date run_7_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_md5 run_7_srafile_3_semantic_name run_7_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_sratoolkit run_7_srafile_3_supertype run_7_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_3_version run_7_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_1_org run_7_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_2_org run_7_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_alternative_3_org run_7_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_cluster run_7_srafile_4_date run_7_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_md5 run_7_srafile_4_semantic_name run_7_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_sratoolkit run_7_srafile_4_supertype run_7_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_srafile_4_version run_7_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_total_base_count run_7_total_base_cs_native run_7_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_7_total_spots run_8_accession run_8_alias run_8_base_A_count  \\\\\\n\",\n       \"0                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"1                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"2                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"3                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"4                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"..                ...             ...         ...                ...   \\n\",\n       \"495              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"496              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"497              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"498              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"499              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_base_C_count run_8_base_G_count run_8_base_N_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_base_T_count run_8_cloudfile_1_filetype run_8_cloudfile_1_location  \\\\\\n\",\n       \"0                 <NA>                       <NA>                       <NA>   \\n\",\n       \"1                 <NA>                       <NA>                       <NA>   \\n\",\n       \"2                 <NA>                       <NA>                       <NA>   \\n\",\n       \"3                 <NA>                       <NA>                       <NA>   \\n\",\n       \"4                 <NA>                       <NA>                       <NA>   \\n\",\n       \"..                 ...                        ...                        ...   \\n\",\n       \"495               <NA>                       <NA>                       <NA>   \\n\",\n       \"496               <NA>                       <NA>                       <NA>   \\n\",\n       \"497               <NA>                       <NA>                       <NA>   \\n\",\n       \"498               <NA>                       <NA>                       <NA>   \\n\",\n       \"499               <NA>                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_cloudfile_1_provider run_8_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_cloudfile_2_location run_8_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_cloudfile_3_filetype run_8_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_cloudfile_3_provider run_8_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_cloudfile_4_location run_8_cloudfile_4_provider run_8_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_database_1 run_8_has_taxanalysis run_8_is_public run_8_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_published run_8_size run_8_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_1_org run_8_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_2_org run_8_srafile_1_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_alternative_3_org run_8_srafile_1_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_cluster run_8_srafile_1_date run_8_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_md5 run_8_srafile_1_semantic_name run_8_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_sratoolkit run_8_srafile_1_supertype run_8_srafile_1_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_1_version run_8_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_alternative_1_org run_8_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_cluster run_8_srafile_2_date run_8_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_md5 run_8_srafile_2_semantic_name run_8_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_sratoolkit run_8_srafile_2_supertype run_8_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_2_version run_8_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_1_org run_8_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_2_org run_8_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_alternative_3_org run_8_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_cluster run_8_srafile_3_date run_8_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_md5 run_8_srafile_3_semantic_name run_8_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_sratoolkit run_8_srafile_3_supertype run_8_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_3_version run_8_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_1_org run_8_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_2_org run_8_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_alternative_3_org run_8_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_cluster run_8_srafile_4_date run_8_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_md5 run_8_srafile_4_semantic_name run_8_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_sratoolkit run_8_srafile_4_supertype run_8_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_srafile_4_version run_8_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_total_base_count run_8_total_base_cs_native run_8_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_8_total_spots run_9_accession run_9_alias run_9_base_A_count  \\\\\\n\",\n       \"0                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"1                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"2                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"3                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"4                <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"..                ...             ...         ...                ...   \\n\",\n       \"495              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"496              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"497              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"498              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"499              <NA>            <NA>        <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_base_C_count run_9_base_G_count run_9_base_N_count  \\\\\\n\",\n       \"0                 <NA>               <NA>               <NA>   \\n\",\n       \"1                 <NA>               <NA>               <NA>   \\n\",\n       \"2                 <NA>               <NA>               <NA>   \\n\",\n       \"3                 <NA>               <NA>               <NA>   \\n\",\n       \"4                 <NA>               <NA>               <NA>   \\n\",\n       \"..                 ...                ...                ...   \\n\",\n       \"495               <NA>               <NA>               <NA>   \\n\",\n       \"496               <NA>               <NA>               <NA>   \\n\",\n       \"497               <NA>               <NA>               <NA>   \\n\",\n       \"498               <NA>               <NA>               <NA>   \\n\",\n       \"499               <NA>               <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_base_T_count run_9_cloudfile_1_filetype run_9_cloudfile_1_location  \\\\\\n\",\n       \"0                 <NA>                       <NA>                       <NA>   \\n\",\n       \"1                 <NA>                       <NA>                       <NA>   \\n\",\n       \"2                 <NA>                       <NA>                       <NA>   \\n\",\n       \"3                 <NA>                       <NA>                       <NA>   \\n\",\n       \"4                 <NA>                       <NA>                       <NA>   \\n\",\n       \"..                 ...                        ...                        ...   \\n\",\n       \"495               <NA>                       <NA>                       <NA>   \\n\",\n       \"496               <NA>                       <NA>                       <NA>   \\n\",\n       \"497               <NA>                       <NA>                       <NA>   \\n\",\n       \"498               <NA>                       <NA>                       <NA>   \\n\",\n       \"499               <NA>                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_cloudfile_1_provider run_9_cloudfile_2_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_cloudfile_2_location run_9_cloudfile_2_provider  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_cloudfile_3_filetype run_9_cloudfile_3_location  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_cloudfile_3_provider run_9_cloudfile_4_filetype  \\\\\\n\",\n       \"0                         <NA>                       <NA>   \\n\",\n       \"1                         <NA>                       <NA>   \\n\",\n       \"2                         <NA>                       <NA>   \\n\",\n       \"3                         <NA>                       <NA>   \\n\",\n       \"4                         <NA>                       <NA>   \\n\",\n       \"..                         ...                        ...   \\n\",\n       \"495                       <NA>                       <NA>   \\n\",\n       \"496                       <NA>                       <NA>   \\n\",\n       \"497                       <NA>                       <NA>   \\n\",\n       \"498                       <NA>                       <NA>   \\n\",\n       \"499                       <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_cloudfile_4_location run_9_cloudfile_4_provider run_9_cluster_name  \\\\\\n\",\n       \"0                         <NA>                       <NA>               <NA>   \\n\",\n       \"1                         <NA>                       <NA>               <NA>   \\n\",\n       \"2                         <NA>                       <NA>               <NA>   \\n\",\n       \"3                         <NA>                       <NA>               <NA>   \\n\",\n       \"4                         <NA>                       <NA>               <NA>   \\n\",\n       \"..                         ...                        ...                ...   \\n\",\n       \"495                       <NA>                       <NA>               <NA>   \\n\",\n       \"496                       <NA>                       <NA>               <NA>   \\n\",\n       \"497                       <NA>                       <NA>               <NA>   \\n\",\n       \"498                       <NA>                       <NA>               <NA>   \\n\",\n       \"499                       <NA>                       <NA>               <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_database_1 run_9_has_taxanalysis run_9_is_public run_9_load_done  \\\\\\n\",\n       \"0               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"1               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"2               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"3               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"4               <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"..               ...                   ...             ...             ...   \\n\",\n       \"495             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"496             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"497             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"498             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"499             <NA>                  <NA>            <NA>            <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_published run_9_size run_9_srafile_1_alternative_1_access_type  \\\\\\n\",\n       \"0              <NA>       <NA>                                      <NA>   \\n\",\n       \"1              <NA>       <NA>                                      <NA>   \\n\",\n       \"2              <NA>       <NA>                                      <NA>   \\n\",\n       \"3              <NA>       <NA>                                      <NA>   \\n\",\n       \"4              <NA>       <NA>                                      <NA>   \\n\",\n       \"..              ...        ...                                       ...   \\n\",\n       \"495            <NA>       <NA>                                      <NA>   \\n\",\n       \"496            <NA>       <NA>                                      <NA>   \\n\",\n       \"497            <NA>       <NA>                                      <NA>   \\n\",\n       \"498            <NA>       <NA>                                      <NA>   \\n\",\n       \"499            <NA>       <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_alternative_1_org run_9_srafile_1_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_cluster run_9_srafile_1_date run_9_srafile_1_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_md5 run_9_srafile_1_semantic_name run_9_srafile_1_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_sratoolkit run_9_srafile_1_supertype  \\\\\\n\",\n       \"0                         <NA>                      <NA>   \\n\",\n       \"1                         <NA>                      <NA>   \\n\",\n       \"2                         <NA>                      <NA>   \\n\",\n       \"3                         <NA>                      <NA>   \\n\",\n       \"4                         <NA>                      <NA>   \\n\",\n       \"..                         ...                       ...   \\n\",\n       \"495                       <NA>                      <NA>   \\n\",\n       \"496                       <NA>                      <NA>   \\n\",\n       \"497                       <NA>                      <NA>   \\n\",\n       \"498                       <NA>                      <NA>   \\n\",\n       \"499                       <NA>                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_1_version run_9_srafile_2_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_alternative_1_org run_9_srafile_2_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_cluster run_9_srafile_2_date run_9_srafile_2_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_md5 run_9_srafile_2_semantic_name run_9_srafile_2_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_sratoolkit run_9_srafile_2_supertype run_9_srafile_2_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_2_version run_9_srafile_3_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_1_org run_9_srafile_3_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_2_org run_9_srafile_3_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_alternative_3_org run_9_srafile_3_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_cluster run_9_srafile_3_date run_9_srafile_3_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_md5 run_9_srafile_3_semantic_name run_9_srafile_3_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_sratoolkit run_9_srafile_3_supertype run_9_srafile_3_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_3_version run_9_srafile_4_alternative_1_access_type  \\\\\\n\",\n       \"0                      <NA>                                      <NA>   \\n\",\n       \"1                      <NA>                                      <NA>   \\n\",\n       \"2                      <NA>                                      <NA>   \\n\",\n       \"3                      <NA>                                      <NA>   \\n\",\n       \"4                      <NA>                                      <NA>   \\n\",\n       \"..                      ...                                       ...   \\n\",\n       \"495                    <NA>                                      <NA>   \\n\",\n       \"496                    <NA>                                      <NA>   \\n\",\n       \"497                    <NA>                                      <NA>   \\n\",\n       \"498                    <NA>                                      <NA>   \\n\",\n       \"499                    <NA>                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_1_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_1_org run_9_srafile_4_alternative_1_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_2_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_2_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_2_org run_9_srafile_4_alternative_2_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_3_access_type  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_3_free_egress  \\\\\\n\",\n       \"0                                        <NA>   \\n\",\n       \"1                                        <NA>   \\n\",\n       \"2                                        <NA>   \\n\",\n       \"3                                        <NA>   \\n\",\n       \"4                                        <NA>   \\n\",\n       \"..                                        ...   \\n\",\n       \"495                                      <NA>   \\n\",\n       \"496                                      <NA>   \\n\",\n       \"497                                      <NA>   \\n\",\n       \"498                                      <NA>   \\n\",\n       \"499                                      <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_alternative_3_org run_9_srafile_4_alternative_3_url  \\\\\\n\",\n       \"0                                <NA>                              <NA>   \\n\",\n       \"1                                <NA>                              <NA>   \\n\",\n       \"2                                <NA>                              <NA>   \\n\",\n       \"3                                <NA>                              <NA>   \\n\",\n       \"4                                <NA>                              <NA>   \\n\",\n       \"..                                ...                               ...   \\n\",\n       \"495                              <NA>                              <NA>   \\n\",\n       \"496                              <NA>                              <NA>   \\n\",\n       \"497                              <NA>                              <NA>   \\n\",\n       \"498                              <NA>                              <NA>   \\n\",\n       \"499                              <NA>                              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_cluster run_9_srafile_4_date run_9_srafile_4_filename  \\\\\\n\",\n       \"0                      <NA>                 <NA>                     <NA>   \\n\",\n       \"1                      <NA>                 <NA>                     <NA>   \\n\",\n       \"2                      <NA>                 <NA>                     <NA>   \\n\",\n       \"3                      <NA>                 <NA>                     <NA>   \\n\",\n       \"4                      <NA>                 <NA>                     <NA>   \\n\",\n       \"..                      ...                  ...                      ...   \\n\",\n       \"495                    <NA>                 <NA>                     <NA>   \\n\",\n       \"496                    <NA>                 <NA>                     <NA>   \\n\",\n       \"497                    <NA>                 <NA>                     <NA>   \\n\",\n       \"498                    <NA>                 <NA>                     <NA>   \\n\",\n       \"499                    <NA>                 <NA>                     <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_md5 run_9_srafile_4_semantic_name run_9_srafile_4_size  \\\\\\n\",\n       \"0                  <NA>                          <NA>                 <NA>   \\n\",\n       \"1                  <NA>                          <NA>                 <NA>   \\n\",\n       \"2                  <NA>                          <NA>                 <NA>   \\n\",\n       \"3                  <NA>                          <NA>                 <NA>   \\n\",\n       \"4                  <NA>                          <NA>                 <NA>   \\n\",\n       \"..                  ...                           ...                  ...   \\n\",\n       \"495                <NA>                          <NA>                 <NA>   \\n\",\n       \"496                <NA>                          <NA>                 <NA>   \\n\",\n       \"497                <NA>                          <NA>                 <NA>   \\n\",\n       \"498                <NA>                          <NA>                 <NA>   \\n\",\n       \"499                <NA>                          <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_sratoolkit run_9_srafile_4_supertype run_9_srafile_4_url  \\\\\\n\",\n       \"0                         <NA>                      <NA>                <NA>   \\n\",\n       \"1                         <NA>                      <NA>                <NA>   \\n\",\n       \"2                         <NA>                      <NA>                <NA>   \\n\",\n       \"3                         <NA>                      <NA>                <NA>   \\n\",\n       \"4                         <NA>                      <NA>                <NA>   \\n\",\n       \"..                         ...                       ...                 ...   \\n\",\n       \"495                       <NA>                      <NA>                <NA>   \\n\",\n       \"496                       <NA>                      <NA>                <NA>   \\n\",\n       \"497                       <NA>                      <NA>                <NA>   \\n\",\n       \"498                       <NA>                      <NA>                <NA>   \\n\",\n       \"499                       <NA>                      <NA>                <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_srafile_4_version run_9_static_data_available  \\\\\\n\",\n       \"0                      <NA>                        <NA>   \\n\",\n       \"1                      <NA>                        <NA>   \\n\",\n       \"2                      <NA>                        <NA>   \\n\",\n       \"3                      <NA>                        <NA>   \\n\",\n       \"4                      <NA>                        <NA>   \\n\",\n       \"..                      ...                         ...   \\n\",\n       \"495                    <NA>                        <NA>   \\n\",\n       \"496                    <NA>                        <NA>   \\n\",\n       \"497                    <NA>                        <NA>   \\n\",\n       \"498                    <NA>                        <NA>   \\n\",\n       \"499                    <NA>                        <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_total_base_count run_9_total_base_cs_native run_9_total_bases  \\\\\\n\",\n       \"0                     <NA>                       <NA>              <NA>   \\n\",\n       \"1                     <NA>                       <NA>              <NA>   \\n\",\n       \"2                     <NA>                       <NA>              <NA>   \\n\",\n       \"3                     <NA>                       <NA>              <NA>   \\n\",\n       \"4                     <NA>                       <NA>              <NA>   \\n\",\n       \"..                     ...                        ...               ...   \\n\",\n       \"495                   <NA>                       <NA>              <NA>   \\n\",\n       \"496                   <NA>                       <NA>              <NA>   \\n\",\n       \"497                   <NA>                       <NA>              <NA>   \\n\",\n       \"498                   <NA>                       <NA>              <NA>   \\n\",\n       \"499                   <NA>                       <NA>              <NA>   \\n\",\n       \"\\n\",\n       \"    run_9_total_spots run_set_bases run_set_bytes run_set_runs run_set_spots  \\\\\\n\",\n       \"0                <NA>  188925378804   66603478590            1    1166206042   \\n\",\n       \"1                <NA>  192894006204   68479328404            1    1190703742   \\n\",\n       \"2                <NA>             0             0            1             0   \\n\",\n       \"3                <NA>             0             0            1             0   \\n\",\n       \"4                <NA>  197963193888   70518842810            1    1221995024   \\n\",\n       \"..                ...           ...           ...          ...           ...   \\n\",\n       \"495              <NA>   13178772204    4391584473            1      67443792   \\n\",\n       \"496              <NA>   10690654836    3661511279            1      54395336   \\n\",\n       \"497              <NA>   12241438327    4091462023            1      62043721   \\n\",\n       \"498              <NA>   12918706392    4388118727            1      65966410   \\n\",\n       \"499              <NA>   13000066097    4549420217            1      65557755   \\n\",\n       \"\\n\",\n       \"    sample_attributes_10_tag sample_attributes_10_value  \\\\\\n\",\n       \"0                       <NA>                       <NA>   \\n\",\n       \"1                       <NA>                       <NA>   \\n\",\n       \"2                       <NA>                       <NA>   \\n\",\n       \"3                       <NA>                       <NA>   \\n\",\n       \"4                       <NA>                       <NA>   \\n\",\n       \"..                       ...                        ...   \\n\",\n       \"495                     <NA>                       <NA>   \\n\",\n       \"496                     <NA>                       <NA>   \\n\",\n       \"497                     <NA>                       <NA>   \\n\",\n       \"498                     <NA>                       <NA>   \\n\",\n       \"499                     <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_11_tag sample_attributes_11_value  \\\\\\n\",\n       \"0                       <NA>                       <NA>   \\n\",\n       \"1                       <NA>                       <NA>   \\n\",\n       \"2                       <NA>                       <NA>   \\n\",\n       \"3                       <NA>                       <NA>   \\n\",\n       \"4                       <NA>                       <NA>   \\n\",\n       \"..                       ...                        ...   \\n\",\n       \"495                     <NA>                       <NA>   \\n\",\n       \"496                     <NA>                       <NA>   \\n\",\n       \"497                     <NA>                       <NA>   \\n\",\n       \"498                     <NA>                       <NA>   \\n\",\n       \"499                     <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_12_tag sample_attributes_12_value  \\\\\\n\",\n       \"0                       <NA>                       <NA>   \\n\",\n       \"1                       <NA>                       <NA>   \\n\",\n       \"2                       <NA>                       <NA>   \\n\",\n       \"3                       <NA>                       <NA>   \\n\",\n       \"4                       <NA>                       <NA>   \\n\",\n       \"..                       ...                        ...   \\n\",\n       \"495                     <NA>                       <NA>   \\n\",\n       \"496                     <NA>                       <NA>   \\n\",\n       \"497                     <NA>                       <NA>   \\n\",\n       \"498                     <NA>                       <NA>   \\n\",\n       \"499                     <NA>                       <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_1_tag sample_attributes_1_value sample_attributes_2_tag  \\\\\\n\",\n       \"0               source_name                     liver                  tissue   \\n\",\n       \"1               source_name                     liver                  tissue   \\n\",\n       \"2               source_name                     liver                  tissue   \\n\",\n       \"3               source_name                     liver                  tissue   \\n\",\n       \"4               source_name                     liver                  tissue   \\n\",\n       \"..                      ...                       ...                     ...   \\n\",\n       \"495             source_name                total skin                  strain   \\n\",\n       \"496             source_name                total skin                  strain   \\n\",\n       \"497             source_name                total skin                  strain   \\n\",\n       \"498             source_name                total skin                  strain   \\n\",\n       \"499             source_name                total skin                  strain   \\n\",\n       \"\\n\",\n       \"    sample_attributes_2_value sample_attributes_3_tag  \\\\\\n\",\n       \"0                       liver               cell line   \\n\",\n       \"1                       liver               cell line   \\n\",\n       \"2                       liver               cell line   \\n\",\n       \"3                       liver               cell line   \\n\",\n       \"4                       liver               cell line   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                   C57BL/6                genotype   \\n\",\n       \"496                   C57BL/6                genotype   \\n\",\n       \"497                   C57BL/6                genotype   \\n\",\n       \"498                   C57BL/6                genotype   \\n\",\n       \"499                   C57BL/6                genotype   \\n\",\n       \"\\n\",\n       \"    sample_attributes_3_value sample_attributes_4_tag  \\\\\\n\",\n       \"0                      HepaRG               cell type   \\n\",\n       \"1                      HepaRG               cell type   \\n\",\n       \"2                      HepaRG               cell type   \\n\",\n       \"3                      HepaRG               cell type   \\n\",\n       \"4                      HepaRG               cell type   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                     db/db                  tissue   \\n\",\n       \"496                     db/db                  tissue   \\n\",\n       \"497                     db/db                  tissue   \\n\",\n       \"498                     db/db                  tissue   \\n\",\n       \"499                     db/db                  tissue   \\n\",\n       \"\\n\",\n       \"    sample_attributes_4_value sample_attributes_5_tag  \\\\\\n\",\n       \"0                  hepatocyte                   batch   \\n\",\n       \"1                  hepatocyte                   batch   \\n\",\n       \"2                  hepatocyte                   batch   \\n\",\n       \"3                  hepatocyte                   batch   \\n\",\n       \"4                  hepatocyte                   batch   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                total skin                    <NA>   \\n\",\n       \"496                total skin                    <NA>   \\n\",\n       \"497                total skin                    <NA>   \\n\",\n       \"498                total skin                    <NA>   \\n\",\n       \"499                total skin                    <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_5_value sample_attributes_6_tag  \\\\\\n\",\n       \"0                           1            geo_loc_name   \\n\",\n       \"1                           1            geo_loc_name   \\n\",\n       \"2                           1            geo_loc_name   \\n\",\n       \"3                           1            geo_loc_name   \\n\",\n       \"4                           1            geo_loc_name   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                      <NA>                    <NA>   \\n\",\n       \"496                      <NA>                    <NA>   \\n\",\n       \"497                      <NA>                    <NA>   \\n\",\n       \"498                      <NA>                    <NA>   \\n\",\n       \"499                      <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_6_value sample_attributes_7_tag  \\\\\\n\",\n       \"0                     missing         collection_date   \\n\",\n       \"1                     missing         collection_date   \\n\",\n       \"2                     missing         collection_date   \\n\",\n       \"3                     missing         collection_date   \\n\",\n       \"4                     missing         collection_date   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                      <NA>                    <NA>   \\n\",\n       \"496                      <NA>                    <NA>   \\n\",\n       \"497                      <NA>                    <NA>   \\n\",\n       \"498                      <NA>                    <NA>   \\n\",\n       \"499                      <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_7_value sample_attributes_8_tag  \\\\\\n\",\n       \"0                     missing                    <NA>   \\n\",\n       \"1                     missing                    <NA>   \\n\",\n       \"2                     missing                    <NA>   \\n\",\n       \"3                     missing                    <NA>   \\n\",\n       \"4                     missing                    <NA>   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                      <NA>                    <NA>   \\n\",\n       \"496                      <NA>                    <NA>   \\n\",\n       \"497                      <NA>                    <NA>   \\n\",\n       \"498                      <NA>                    <NA>   \\n\",\n       \"499                      <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_8_value sample_attributes_9_tag  \\\\\\n\",\n       \"0                        <NA>                    <NA>   \\n\",\n       \"1                        <NA>                    <NA>   \\n\",\n       \"2                        <NA>                    <NA>   \\n\",\n       \"3                        <NA>                    <NA>   \\n\",\n       \"4                        <NA>                    <NA>   \\n\",\n       \"..                        ...                     ...   \\n\",\n       \"495                      <NA>                    <NA>   \\n\",\n       \"496                      <NA>                    <NA>   \\n\",\n       \"497                      <NA>                    <NA>   \\n\",\n       \"498                      <NA>                    <NA>   \\n\",\n       \"499                      <NA>                    <NA>   \\n\",\n       \"\\n\",\n       \"    sample_attributes_9_value sample_external_id_1  \\\\\\n\",\n       \"0                        <NA>         SAMN50743878   \\n\",\n       \"1                        <NA>         SAMN50743879   \\n\",\n       \"2                        <NA>         SAMN50743880   \\n\",\n       \"3                        <NA>         SAMN50743881   \\n\",\n       \"4                        <NA>         SAMN50743882   \\n\",\n       \"..                        ...                  ...   \\n\",\n       \"495                      <NA>         SAMN21397775   \\n\",\n       \"496                      <NA>         SAMN21397774   \\n\",\n       \"497                      <NA>         SAMN21397773   \\n\",\n       \"498                      <NA>         SAMN21397772   \\n\",\n       \"499                      <NA>         SAMN21397771   \\n\",\n       \"\\n\",\n       \"    sample_external_id_1_namespace sample_link_1_type sample_link_1_value_1  \\\\\\n\",\n       \"0                        BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"1                        BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"2                        BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"3                        BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"4                        BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"..                             ...                ...                   ...   \\n\",\n       \"495                      BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"496                      BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"497                      BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"498                      BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"499                      BioSample          XREF_LINK        DB: bioproject   \\n\",\n       \"\\n\",\n       \"    sample_link_1_value_2 sample_link_1_value_3  \\\\\\n\",\n       \"0             ID: 1309017   LABEL: PRJNA1309017   \\n\",\n       \"1             ID: 1309017   LABEL: PRJNA1309017   \\n\",\n       \"2             ID: 1309017   LABEL: PRJNA1309017   \\n\",\n       \"3             ID: 1309017   LABEL: PRJNA1309017   \\n\",\n       \"4             ID: 1309017   LABEL: PRJNA1309017   \\n\",\n       \"..                    ...                   ...   \\n\",\n       \"495            ID: 762540    LABEL: PRJNA762540   \\n\",\n       \"496            ID: 762540    LABEL: PRJNA762540   \\n\",\n       \"497            ID: 762540    LABEL: PRJNA762540   \\n\",\n       \"498            ID: 762540    LABEL: PRJNA762540   \\n\",\n       \"499            ID: 762540    LABEL: PRJNA762540   \\n\",\n       \"\\n\",\n       \"                                           sample_title study_alias  \\\\\\n\",\n       \"0                                          Sublibrary 8   GSE306046   \\n\",\n       \"1                                          Sublibrary 7   GSE306046   \\n\",\n       \"2                                          Sublibrary 6   GSE306046   \\n\",\n       \"3                                          Sublibrary 5   GSE306046   \\n\",\n       \"4                                          Sublibrary 4   GSE306046   \\n\",\n       \"..                                                  ...         ...   \\n\",\n       \"495  db/db day 5 wound skin sodium butyrate replicate 1   GSE183965   \\n\",\n       \"496          db/db day 5 wound skin vehicle replicate 5   GSE183965   \\n\",\n       \"497          db/db day 5 wound skin vehicle replicate 4   GSE183965   \\n\",\n       \"498          db/db day 5 wound skin vehicle replicate 3   GSE183965   \\n\",\n       \"499          db/db day 5 wound skin vehicle replicate 2   GSE183965   \\n\",\n       \"\\n\",\n       \"    study_attributes_1_tag study_attributes_1_value study_center_name  \\\\\\n\",\n       \"0                     <NA>                     <NA>               GEO   \\n\",\n       \"1                     <NA>                     <NA>               GEO   \\n\",\n       \"2                     <NA>                     <NA>               GEO   \\n\",\n       \"3                     <NA>                     <NA>               GEO   \\n\",\n       \"4                     <NA>                     <NA>               GEO   \\n\",\n       \"..                     ...                      ...               ...   \\n\",\n       \"495                   <NA>                     <NA>               GEO   \\n\",\n       \"496                   <NA>                     <NA>               GEO   \\n\",\n       \"497                   <NA>                     <NA>               GEO   \\n\",\n       \"498                   <NA>                     <NA>               GEO   \\n\",\n       \"499                   <NA>                     <NA>               GEO   \\n\",\n       \"\\n\",\n       \"    study_center_project_name study_external_id_1  \\\\\\n\",\n       \"0                   GSE306046        PRJNA1309017   \\n\",\n       \"1                   GSE306046        PRJNA1309017   \\n\",\n       \"2                   GSE306046        PRJNA1309017   \\n\",\n       \"3                   GSE306046        PRJNA1309017   \\n\",\n       \"4                   GSE306046        PRJNA1309017   \\n\",\n       \"..                        ...                 ...   \\n\",\n       \"495                 GSE183965         PRJNA762540   \\n\",\n       \"496                 GSE183965         PRJNA762540   \\n\",\n       \"497                 GSE183965         PRJNA762540   \\n\",\n       \"498                 GSE183965         PRJNA762540   \\n\",\n       \"499                 GSE183965         PRJNA762540   \\n\",\n       \"\\n\",\n       \"    study_external_id_1_namespace study_link_1_type study_link_1_value_1  \\\\\\n\",\n       \"0                      BioProject              <NA>                 <NA>   \\n\",\n       \"1                      BioProject              <NA>                 <NA>   \\n\",\n       \"2                      BioProject              <NA>                 <NA>   \\n\",\n       \"3                      BioProject              <NA>                 <NA>   \\n\",\n       \"4                      BioProject              <NA>                 <NA>   \\n\",\n       \"..                            ...               ...                  ...   \\n\",\n       \"495                    BioProject              <NA>                 <NA>   \\n\",\n       \"496                    BioProject              <NA>                 <NA>   \\n\",\n       \"497                    BioProject              <NA>                 <NA>   \\n\",\n       \"498                    BioProject              <NA>                 <NA>   \\n\",\n       \"499                    BioProject              <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    study_link_1_value_2 study_link_2_type study_link_2_value_1  \\\\\\n\",\n       \"0                   <NA>              <NA>                 <NA>   \\n\",\n       \"1                   <NA>              <NA>                 <NA>   \\n\",\n       \"2                   <NA>              <NA>                 <NA>   \\n\",\n       \"3                   <NA>              <NA>                 <NA>   \\n\",\n       \"4                   <NA>              <NA>                 <NA>   \\n\",\n       \"..                   ...               ...                  ...   \\n\",\n       \"495                 <NA>              <NA>                 <NA>   \\n\",\n       \"496                 <NA>              <NA>                 <NA>   \\n\",\n       \"497                 <NA>              <NA>                 <NA>   \\n\",\n       \"498                 <NA>              <NA>                 <NA>   \\n\",\n       \"499                 <NA>              <NA>                 <NA>   \\n\",\n       \"\\n\",\n       \"    study_link_2_value_2  \\\\\\n\",\n       \"0                   <NA>   \\n\",\n       \"1                   <NA>   \\n\",\n       \"2                   <NA>   \\n\",\n       \"3                   <NA>   \\n\",\n       \"4                   <NA>   \\n\",\n       \"..                   ...   \\n\",\n       \"495                 <NA>   \\n\",\n       \"496                 <NA>   \\n\",\n       \"497                 <NA>   \\n\",\n       \"498                 <NA>   \\n\",\n       \"499                 <NA>   \\n\",\n       \"\\n\",\n       \"                                                                                    study_study_abstract  \\\\\\n\",\n       \"0    Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...   \\n\",\n       \"1    Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...   \\n\",\n       \"2    Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...   \\n\",\n       \"3    Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...   \\n\",\n       \"4    Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of c...   \\n\",\n       \"..                                                                                                   ...   \\n\",\n       \"495  Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...   \\n\",\n       \"496  Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...   \\n\",\n       \"497  Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...   \\n\",\n       \"498  Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...   \\n\",\n       \"499  Dysregulation of macrophage populations at the wound site is responsible for the non-healing sta...   \\n\",\n       \"\\n\",\n       \"                                                                                study_study_title  \\\\\\n\",\n       \"0    Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]   \\n\",\n       \"1    Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]   \\n\",\n       \"2    Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]   \\n\",\n       \"3    Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]   \\n\",\n       \"4    Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]   \\n\",\n       \"..                                                                                            ...   \\n\",\n       \"495              Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds   \\n\",\n       \"496              Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds   \\n\",\n       \"497              Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds   \\n\",\n       \"498              Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds   \\n\",\n       \"499              Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds   \\n\",\n       \"\\n\",\n       \"    study_study_type_existing_study_type submission_accession  \\\\\\n\",\n       \"0                 Transcriptome Analysis           SRA2201062   \\n\",\n       \"1                 Transcriptome Analysis           SRA2201062   \\n\",\n       \"2                 Transcriptome Analysis           SRA2201062   \\n\",\n       \"3                 Transcriptome Analysis           SRA2201062   \\n\",\n       \"4                 Transcriptome Analysis           SRA2201062   \\n\",\n       \"..                                   ...                  ...   \\n\",\n       \"495                                Other           SRA1293148   \\n\",\n       \"496                                Other           SRA1293148   \\n\",\n       \"497                                Other           SRA1293148   \\n\",\n       \"498                                Other           SRA1293148   \\n\",\n       \"499                                Other           SRA1293148   \\n\",\n       \"\\n\",\n       \"    submission_alias submission_broker_name submission_center_name  \\\\\\n\",\n       \"0        SUB15557421                   <NA>                 US EPA   \\n\",\n       \"1        SUB15557421                   <NA>                 US EPA   \\n\",\n       \"2        SUB15557421                   <NA>                 US EPA   \\n\",\n       \"3        SUB15557421                   <NA>                 US EPA   \\n\",\n       \"4        SUB15557421                   <NA>                 US EPA   \\n\",\n       \"..               ...                    ...                    ...   \\n\",\n       \"495   GEO: GSE183965                    GEO                    GEO   \\n\",\n       \"496   GEO: GSE183965                    GEO                    GEO   \\n\",\n       \"497   GEO: GSE183965                    GEO                    GEO   \\n\",\n       \"498   GEO: GSE183965                    GEO                    GEO   \\n\",\n       \"499   GEO: GSE183965                    GEO                    GEO   \\n\",\n       \"\\n\",\n       \"    submission_lab_name submission_submission_comment  \\n\",\n       \"0                  <NA>                          <NA>  \\n\",\n       \"1                  <NA>                          <NA>  \\n\",\n       \"2                  <NA>                          <NA>  \\n\",\n       \"3                  <NA>                          <NA>  \\n\",\n       \"4                  <NA>                          <NA>  \\n\",\n       \"..                  ...                           ...  \\n\",\n       \"495                <NA>    submission brokered by GEO  \\n\",\n       \"496                <NA>    submission brokered by GEO  \\n\",\n       \"497                <NA>    submission brokered by GEO  \\n\",\n       \"498                <NA>    submission brokered by GEO  \\n\",\n       \"499                <NA>    submission brokered by GEO  \\n\",\n       \"\\n\",\n       \"[500 rows x 5888 columns]\"\n      ]\n     },\n     \"execution_count\": 3,\n     \"metadata\": {},\n     \"output_type\": \"execute_result\"\n    }\n   ],\n   \"source\": [\n    \"df\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Filter and Explore Results\\n\",\n    \"\\n\",\n    \"Let's examine the unique studies and get an overview of the datasets:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 4,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.905779Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.905674Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.910461Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.910215Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.905766Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Number of unique studies (GSE IDs): 62\\n\",\n      \"\\n\",\n      \"Unique GSE IDs:\\n\",\n      \"['GSE172289', 'GSE183965', 'GSE199498', 'GSE214374', 'GSE221853', 'GSE225497', 'GSE228214', 'GSE229617', 'GSE233519', 'GSE233606', 'GSE236902', 'GSE239347', 'GSE240096', 'GSE241142', 'GSE241543', 'GSE241693', 'GSE243135', 'GSE244321', 'GSE246140', 'GSE246624', 'GSE249558', 'GSE250009', 'GSE252185', 'GSE252604', 'GSE253230', 'GSE253406', 'GSE253539', 'GSE253642', 'GSE255851', 'GSE256359', 'GSE262111', 'GSE262249', 'GSE263619', 'GSE263863', 'GSE264678', 'GSE268385', 'GSE271203', 'GSE272713', 'GSE272840', 'GSE273089', 'GSE275127', 'GSE278923', 'GSE280717', 'GSE281535', 'GSE281932', 'GSE282851', 'GSE283038', 'GSE283186', 'GSE284207', 'GSE287852', 'GSE289845', 'GSE291674', 'GSE292745', 'GSE295527', 'GSE296244', 'GSE296547', 'GSE297023', 'GSE297299', 'GSE297427', 'GSE299005', 'GSE299409', 'GSE306046']\\n\",\n      \"\\n\",\n      \"================================================================================\\n\",\n      \"DATASET SUMMARY\\n\",\n      \"================================================================================\\n\",\n      \"Total runs: 500\\n\",\n      \"\\n\",\n      \"Organisms represented:\\n\",\n      \"sample_scientific_name\\n\",\n      \"Homo sapiens                           325\\n\",\n      \"Mus musculus                           147\\n\",\n      \"Gallus gallus                           15\\n\",\n      \"Homo sapiens/Mus musculus xenograft      8\\n\",\n      \"Macaca nemestrina                        2\\n\",\n      \"Rattus norvegicus                        1\\n\",\n      \"Mustela putorius furo                    1\\n\",\n      \"Bos taurus                               1\\n\",\n      \"Name: count, dtype: int64\\n\",\n      \"\\n\",\n      \"Library strategies:\\n\",\n      \"experiment_library_strategy\\n\",\n      \"RNA-Seq          440\\n\",\n      \"Bisulfite-Seq     60\\n\",\n      \"Name: count, dtype: int64\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"if not df.empty:\\n\",\n    \"    # Get unique GSE IDs (study accessions)\\n\",\n    \"    if \\\"study_alias\\\" in df.columns:\\n\",\n    \"        unique_studies = df[\\\"study_alias\\\"].unique()\\n\",\n    \"        print(f\\\"Number of unique studies (GSE IDs): {len(unique_studies)}\\\")\\n\",\n    \"        print(f\\\"\\\\nUnique GSE IDs:\\\\n{sorted(unique_studies)}\\\")\\n\",\n    \"\\n\",\n    \"    # Display summary information\\n\",\n    \"    print(f\\\"\\\\n{'='*80}\\\")\\n\",\n    \"    print(\\\"DATASET SUMMARY\\\")\\n\",\n    \"    print(f\\\"{'='*80}\\\")\\n\",\n    \"    print(f\\\"Total runs: {len(df)}\\\")\\n\",\n    \"\\n\",\n    \"    if \\\"sample_scientific_name\\\" in df.columns:\\n\",\n    \"        print(f\\\"\\\\nOrganisms represented:\\\")\\n\",\n    \"        print(df[\\\"sample_scientific_name\\\"].value_counts())\\n\",\n    \"\\n\",\n    \"    if \\\"experiment_library_strategy\\\" in df.columns:\\n\",\n    \"        print(f\\\"\\\\nLibrary strategies:\\\")\\n\",\n    \"        print(df[\\\"experiment_library_strategy\\\"].value_counts())\\n\",\n    \"else:\\n\",\n    \"    print(\\\"No results found. This could mean:\\\")\\n\",\n    \"    print(\\\"1. No Parse Bioscience datasets match the date range\\\")\\n\",\n    \"    print(\\\"2. The search query needs adjustment\\\")\\n\",\n    \"    print(\\\"3. Try searching with a broader query or different date range\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Display Key Metadata\\n\",\n    \"\\n\",\n    \"Let's create a clean summary table with the most important information:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 5,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.910921Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.910847Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.916866Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.916635Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.910913Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"Parse Bioscience Dataset Summary:\\n\",\n      \"================================================================================\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_accession</th>\\n\",\n       \"      <th>study_alias</th>\\n\",\n       \"      <th>experiment_accession</th>\\n\",\n       \"      <th>sample_accession</th>\\n\",\n       \"      <th>sample_scientific_name</th>\\n\",\n       \"      <th>experiment_library_strategy</th>\\n\",\n       \"      <th>experiment_title</th>\\n\",\n       \"      <th>run_1_accession</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>0</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198976</td>\\n\",\n       \"      <td>SRS26258712</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192063: Sublibrary 8; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085617</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>1</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198975</td>\\n\",\n       \"      <td>SRS26258711</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192062: Sublibrary 7; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085618</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198974</td>\\n\",\n       \"      <td>SRS26258710</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192061: Sublibrary 6; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085619</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>3</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198973</td>\\n\",\n       \"      <td>SRS26258709</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192060: Sublibrary 5; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085620</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198972</td>\\n\",\n       \"      <td>SRS26258708</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192059: Sublibrary 4; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085621</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>5</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198971</td>\\n\",\n       \"      <td>SRS26258707</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192058: Sublibrary 3; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085622</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>6</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198970</td>\\n\",\n       \"      <td>SRS26258706</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192057: Sublibrary 2; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085623</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>7</th>\\n\",\n       \"      <td>SRP610621</td>\\n\",\n       \"      <td>GSE306046</td>\\n\",\n       \"      <td>SRX30198969</td>\\n\",\n       \"      <td>SRS26258705</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9192056: Sublibrary 1; Homo sapiens; RNA-Seq</td>\\n\",\n       \"      <td>SRR35085624</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>8</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129887</td>\\n\",\n       \"      <td>SRS25335612</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038763: all mix sample 8; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926227</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>9</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129886</td>\\n\",\n       \"      <td>SRS25335611</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038762: all mix sample 7; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926228</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>10</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129885</td>\\n\",\n       \"      <td>SRS25335610</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038761: all mix sample 6; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926229</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>11</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129884</td>\\n\",\n       \"      <td>SRS25335609</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038760: all mix sample 5; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926230</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>12</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129883</td>\\n\",\n       \"      <td>SRS25335608</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038759: all mix sample 4; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926231</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>13</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129882</td>\\n\",\n       \"      <td>SRS25335607</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038758: all mix sample 3; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926232</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>14</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129881</td>\\n\",\n       \"      <td>SRS25335606</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038757: all mix sample 2; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926233</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>15</th>\\n\",\n       \"      <td>SRP591195</td>\\n\",\n       \"      <td>GSE299409</td>\\n\",\n       \"      <td>SRX29129880</td>\\n\",\n       \"      <td>SRS25335605</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9038756: all mix sample 1; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33926234</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>16</th>\\n\",\n       \"      <td>SRP589942</td>\\n\",\n       \"      <td>GSE299005</td>\\n\",\n       \"      <td>SRX29052446</td>\\n\",\n       \"      <td>SRS25267580</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9030358: Cortical tissue, all 4 groups mixed, 6562; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33831644</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>17</th>\\n\",\n       \"      <td>SRP589942</td>\\n\",\n       \"      <td>GSE299005</td>\\n\",\n       \"      <td>SRX29052445</td>\\n\",\n       \"      <td>SRS25267579</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM9030357: Cortical tissue, all 4 groups mixed, 6142; Mus musculus; RNA-Seq</td>\\n\",\n       \"      <td>SRR33831645</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>18</th>\\n\",\n       \"      <td>SRP586001</td>\\n\",\n       \"      <td>GSE297427</td>\\n\",\n       \"      <td>SRX28837662</td>\\n\",\n       \"      <td>SRS25068573</td>\\n\",\n       \"      <td>Homo sapiens/Mus musculus xenograft</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM8991181: NK_CXCL10_2; Homo sapiens/Mus musculus xenograft; RNA-Seq</td>\\n\",\n       \"      <td>SRR33609182</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>19</th>\\n\",\n       \"      <td>SRP586001</td>\\n\",\n       \"      <td>GSE297427</td>\\n\",\n       \"      <td>SRX28837661</td>\\n\",\n       \"      <td>SRS25068574</td>\\n\",\n       \"      <td>Homo sapiens/Mus musculus xenograft</td>\\n\",\n       \"      <td>RNA-Seq</td>\\n\",\n       \"      <td>GSM8991180: NK_CXCL10_1; Homo sapiens/Mus musculus xenograft; RNA-Seq</td>\\n\",\n       \"      <td>SRR33609183</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   study_accession study_alias experiment_accession sample_accession  \\\\\\n\",\n       \"0        SRP610621   GSE306046          SRX30198976      SRS26258712   \\n\",\n       \"1        SRP610621   GSE306046          SRX30198975      SRS26258711   \\n\",\n       \"2        SRP610621   GSE306046          SRX30198974      SRS26258710   \\n\",\n       \"3        SRP610621   GSE306046          SRX30198973      SRS26258709   \\n\",\n       \"4        SRP610621   GSE306046          SRX30198972      SRS26258708   \\n\",\n       \"5        SRP610621   GSE306046          SRX30198971      SRS26258707   \\n\",\n       \"6        SRP610621   GSE306046          SRX30198970      SRS26258706   \\n\",\n       \"7        SRP610621   GSE306046          SRX30198969      SRS26258705   \\n\",\n       \"8        SRP591195   GSE299409          SRX29129887      SRS25335612   \\n\",\n       \"9        SRP591195   GSE299409          SRX29129886      SRS25335611   \\n\",\n       \"10       SRP591195   GSE299409          SRX29129885      SRS25335610   \\n\",\n       \"11       SRP591195   GSE299409          SRX29129884      SRS25335609   \\n\",\n       \"12       SRP591195   GSE299409          SRX29129883      SRS25335608   \\n\",\n       \"13       SRP591195   GSE299409          SRX29129882      SRS25335607   \\n\",\n       \"14       SRP591195   GSE299409          SRX29129881      SRS25335606   \\n\",\n       \"15       SRP591195   GSE299409          SRX29129880      SRS25335605   \\n\",\n       \"16       SRP589942   GSE299005          SRX29052446      SRS25267580   \\n\",\n       \"17       SRP589942   GSE299005          SRX29052445      SRS25267579   \\n\",\n       \"18       SRP586001   GSE297427          SRX28837662      SRS25068573   \\n\",\n       \"19       SRP586001   GSE297427          SRX28837661      SRS25068574   \\n\",\n       \"\\n\",\n       \"                 sample_scientific_name experiment_library_strategy  \\\\\\n\",\n       \"0                          Homo sapiens                     RNA-Seq   \\n\",\n       \"1                          Homo sapiens                     RNA-Seq   \\n\",\n       \"2                          Homo sapiens                     RNA-Seq   \\n\",\n       \"3                          Homo sapiens                     RNA-Seq   \\n\",\n       \"4                          Homo sapiens                     RNA-Seq   \\n\",\n       \"5                          Homo sapiens                     RNA-Seq   \\n\",\n       \"6                          Homo sapiens                     RNA-Seq   \\n\",\n       \"7                          Homo sapiens                     RNA-Seq   \\n\",\n       \"8                          Mus musculus                     RNA-Seq   \\n\",\n       \"9                          Mus musculus                     RNA-Seq   \\n\",\n       \"10                         Mus musculus                     RNA-Seq   \\n\",\n       \"11                         Mus musculus                     RNA-Seq   \\n\",\n       \"12                         Mus musculus                     RNA-Seq   \\n\",\n       \"13                         Mus musculus                     RNA-Seq   \\n\",\n       \"14                         Mus musculus                     RNA-Seq   \\n\",\n       \"15                         Mus musculus                     RNA-Seq   \\n\",\n       \"16                         Mus musculus                     RNA-Seq   \\n\",\n       \"17                         Mus musculus                     RNA-Seq   \\n\",\n       \"18  Homo sapiens/Mus musculus xenograft                     RNA-Seq   \\n\",\n       \"19  Homo sapiens/Mus musculus xenograft                     RNA-Seq   \\n\",\n       \"\\n\",\n       \"                                                                experiment_title  \\\\\\n\",\n       \"0                                GSM9192063: Sublibrary 8; Homo sapiens; RNA-Seq   \\n\",\n       \"1                                GSM9192062: Sublibrary 7; Homo sapiens; RNA-Seq   \\n\",\n       \"2                                GSM9192061: Sublibrary 6; Homo sapiens; RNA-Seq   \\n\",\n       \"3                                GSM9192060: Sublibrary 5; Homo sapiens; RNA-Seq   \\n\",\n       \"4                                GSM9192059: Sublibrary 4; Homo sapiens; RNA-Seq   \\n\",\n       \"5                                GSM9192058: Sublibrary 3; Homo sapiens; RNA-Seq   \\n\",\n       \"6                                GSM9192057: Sublibrary 2; Homo sapiens; RNA-Seq   \\n\",\n       \"7                                GSM9192056: Sublibrary 1; Homo sapiens; RNA-Seq   \\n\",\n       \"8                            GSM9038763: all mix sample 8; Mus musculus; RNA-Seq   \\n\",\n       \"9                            GSM9038762: all mix sample 7; Mus musculus; RNA-Seq   \\n\",\n       \"10                           GSM9038761: all mix sample 6; Mus musculus; RNA-Seq   \\n\",\n       \"11                           GSM9038760: all mix sample 5; Mus musculus; RNA-Seq   \\n\",\n       \"12                           GSM9038759: all mix sample 4; Mus musculus; RNA-Seq   \\n\",\n       \"13                           GSM9038758: all mix sample 3; Mus musculus; RNA-Seq   \\n\",\n       \"14                           GSM9038757: all mix sample 2; Mus musculus; RNA-Seq   \\n\",\n       \"15                           GSM9038756: all mix sample 1; Mus musculus; RNA-Seq   \\n\",\n       \"16  GSM9030358: Cortical tissue, all 4 groups mixed, 6562; Mus musculus; RNA-Seq   \\n\",\n       \"17  GSM9030357: Cortical tissue, all 4 groups mixed, 6142; Mus musculus; RNA-Seq   \\n\",\n       \"18         GSM8991181: NK_CXCL10_2; Homo sapiens/Mus musculus xenograft; RNA-Seq   \\n\",\n       \"19         GSM8991180: NK_CXCL10_1; Homo sapiens/Mus musculus xenograft; RNA-Seq   \\n\",\n       \"\\n\",\n       \"   run_1_accession  \\n\",\n       \"0      SRR35085617  \\n\",\n       \"1      SRR35085618  \\n\",\n       \"2      SRR35085619  \\n\",\n       \"3      SRR35085620  \\n\",\n       \"4      SRR35085621  \\n\",\n       \"5      SRR35085622  \\n\",\n       \"6      SRR35085623  \\n\",\n       \"7      SRR35085624  \\n\",\n       \"8      SRR33926227  \\n\",\n       \"9      SRR33926228  \\n\",\n       \"10     SRR33926229  \\n\",\n       \"11     SRR33926230  \\n\",\n       \"12     SRR33926231  \\n\",\n       \"13     SRR33926232  \\n\",\n       \"14     SRR33926233  \\n\",\n       \"15     SRR33926234  \\n\",\n       \"16     SRR33831644  \\n\",\n       \"17     SRR33831645  \\n\",\n       \"18     SRR33609182  \\n\",\n       \"19     SRR33609183  \"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"... and 480 more entries\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"if not df.empty:\\n\",\n    \"    # Select key columns for display\\n\",\n    \"    key_columns = [\\n\",\n    \"        \\\"study_accession\\\",\\n\",\n    \"        \\\"study_alias\\\",\\n\",\n    \"        \\\"experiment_accession\\\",\\n\",\n    \"        \\\"sample_accession\\\",\\n\",\n    \"        \\\"sample_scientific_name\\\",\\n\",\n    \"        \\\"experiment_library_strategy\\\",\\n\",\n    \"        \\\"experiment_title\\\",\\n\",\n    \"        \\\"run_1_accession\\\",\\n\",\n    \"    ]\\n\",\n    \"\\n\",\n    \"    # Filter to only include columns that exist\\n\",\n    \"    available_columns = [col for col in key_columns if col in df.columns]\\n\",\n    \"\\n\",\n    \"    summary_df = df[available_columns].copy()\\n\",\n    \"\\n\",\n    \"    print(\\\"\\\\nParse Bioscience Dataset Summary:\\\")\\n\",\n    \"    print(f\\\"{'='*80}\\\\n\\\")\\n\",\n    \"    display(summary_df.head(20))  # Show first 20 entries\\n\",\n    \"\\n\",\n    \"    if len(summary_df) > 20:\\n\",\n    \"        print(f\\\"\\\\n... and {len(summary_df) - 20} more entries\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Organize by Study (GSE)\\n\",\n    \"\\n\",\n    \"Group the data by study to see how many samples/runs belong to each GSE:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 6,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.918185Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.918102Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.926954Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.926738Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.918177Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"Study-level Summary:\\n\",\n      \"================================================================================\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"data\": {\n      \"text/html\": [\n       \"<div>\\n\",\n       \"<style scoped>\\n\",\n       \"    .dataframe tbody tr th:only-of-type {\\n\",\n       \"        vertical-align: middle;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe tbody tr th {\\n\",\n       \"        vertical-align: top;\\n\",\n       \"    }\\n\",\n       \"\\n\",\n       \"    .dataframe thead th {\\n\",\n       \"        text-align: right;\\n\",\n       \"    }\\n\",\n       \"</style>\\n\",\n       \"<table border=\\\"1\\\" class=\\\"dataframe\\\">\\n\",\n       \"  <thead>\\n\",\n       \"    <tr style=\\\"text-align: right;\\\">\\n\",\n       \"      <th></th>\\n\",\n       \"      <th>study_alias</th>\\n\",\n       \"      <th>num_experiments</th>\\n\",\n       \"      <th>organisms</th>\\n\",\n       \"      <th>SRP_accession</th>\\n\",\n       \"    </tr>\\n\",\n       \"  </thead>\\n\",\n       \"  <tbody>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>40</th>\\n\",\n       \"      <td>GSE275127</td>\\n\",\n       \"      <td>60</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>SRP527234</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>53</th>\\n\",\n       \"      <td>GSE295527</td>\\n\",\n       \"      <td>52</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>SRP581094</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>43</th>\\n\",\n       \"      <td>GSE281535</td>\\n\",\n       \"      <td>48</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>SRP544328</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>4</th>\\n\",\n       \"      <td>GSE221853</td>\\n\",\n       \"      <td>38</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>SRP415300</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>11</th>\\n\",\n       \"      <td>GSE239347</td>\\n\",\n       \"      <td>27</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>SRP451573</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>...</th>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"      <td>...</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>13</th>\\n\",\n       \"      <td>GSE241142</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>SRP455769</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>9</th>\\n\",\n       \"      <td>GSE233606</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Homo sapiens</td>\\n\",\n       \"      <td>SRP439840</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>8</th>\\n\",\n       \"      <td>GSE233519</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>SRP439692</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>2</th>\\n\",\n       \"      <td>GSE199498</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>SRP366151</td>\\n\",\n       \"    </tr>\\n\",\n       \"    <tr>\\n\",\n       \"      <th>31</th>\\n\",\n       \"      <td>GSE262249</td>\\n\",\n       \"      <td>1</td>\\n\",\n       \"      <td>Mus musculus</td>\\n\",\n       \"      <td>SRP497297</td>\\n\",\n       \"    </tr>\\n\",\n       \"  </tbody>\\n\",\n       \"</table>\\n\",\n       \"<p>62 rows × 4 columns</p>\\n\",\n       \"</div>\"\n      ],\n      \"text/plain\": [\n       \"   study_alias  num_experiments     organisms SRP_accession\\n\",\n       \"40   GSE275127               60  Homo sapiens     SRP527234\\n\",\n       \"53   GSE295527               52  Homo sapiens     SRP581094\\n\",\n       \"43   GSE281535               48  Homo sapiens     SRP544328\\n\",\n       \"4    GSE221853               38  Homo sapiens     SRP415300\\n\",\n       \"11   GSE239347               27  Mus musculus     SRP451573\\n\",\n       \"..         ...              ...           ...           ...\\n\",\n       \"13   GSE241142                1  Mus musculus     SRP455769\\n\",\n       \"9    GSE233606                1  Homo sapiens     SRP439840\\n\",\n       \"8    GSE233519                1  Mus musculus     SRP439692\\n\",\n       \"2    GSE199498                1  Mus musculus     SRP366151\\n\",\n       \"31   GSE262249                1  Mus musculus     SRP497297\\n\",\n       \"\\n\",\n       \"[62 rows x 4 columns]\"\n      ]\n     },\n     \"metadata\": {},\n     \"output_type\": \"display_data\"\n    }\n   ],\n   \"source\": [\n    \"if not df.empty and \\\"study_alias\\\" in df.columns:\\n\",\n    \"    # Group by study and count entries\\n\",\n    \"    studies_summary = (\\n\",\n    \"        df.groupby(\\\"study_alias\\\")\\n\",\n    \"        .agg(\\n\",\n    \"            {\\n\",\n    \"                \\\"experiment_accession\\\": \\\"count\\\",\\n\",\n    \"                \\\"sample_scientific_name\\\": lambda x: (\\n\",\n    \"                    \\\", \\\".join(x.unique()) if hasattr(x, \\\"unique\\\") else str(x.iloc[0])\\n\",\n    \"                ),\\n\",\n    \"                \\\"study_accession\\\": \\\"first\\\",\\n\",\n    \"            }\\n\",\n    \"        )\\n\",\n    \"        .rename(\\n\",\n    \"            columns={\\n\",\n    \"                \\\"experiment_accession\\\": \\\"num_experiments\\\",\\n\",\n    \"                \\\"sample_scientific_name\\\": \\\"organisms\\\",\\n\",\n    \"                \\\"study_accession\\\": \\\"SRP_accession\\\",\\n\",\n    \"            }\\n\",\n    \"        )\\n\",\n    \"        .reset_index()\\n\",\n    \"    )\\n\",\n    \"\\n\",\n    \"    # Sort by number of experiments (descending)\\n\",\n    \"    studies_summary = studies_summary.sort_values(\\\"num_experiments\\\", ascending=False)\\n\",\n    \"\\n\",\n    \"    print(\\\"\\\\nStudy-level Summary:\\\")\\n\",\n    \"    print(f\\\"{'='*80}\\\\n\\\")\\n\",\n    \"    display(studies_summary)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Get Study Titles and Descriptions\\n\",\n    \"\\n\",\n    \"Extract study titles to understand what each dataset is about:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 7,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.927319Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.927222Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:43.976167Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:43.975771Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.927310Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"\\n\",\n      \"Study Titles and Descriptions:\\n\",\n      \"================================================================================\\n\",\n      \"\\n\",\n      \"GSE: GSE306046\\n\",\n      \"SRP: SRP610621\\n\",\n      \"study_study_abstract: Single-cell transcriptomics (SCTr) offers a powerful platform for decoding the complexities of cellular stress responses to chemical exposures, capturing rare and transient subpopulations that can be obscured in bulk measurements. This study employs SCTr to profile the responses of HepaRG liver cell...\\n\",\n      \"study_study_title: Decoding cellular stress states for toxicology using single-cell transcriptomics [scRNA-Seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE299409\\n\",\n      \"SRP: SRP591195\\n\",\n      \"study_study_abstract: We used single-cell RNA sequencing with the Evercode™ WT kit (Parse Biosciences) to profile kidney immune cells in a mouse model of ischemia-reperfusion injury (IRI), with or without treatment with the SYK inhibitor Entospletinib. The dataset captures immune dynamics at early and late stages of inju...\\n\",\n      \"study_study_title: Effect of the SYK Inhibitor Entospletinib on Renal Inflammation and the Transition from Acute Kidney Injury to Chronic Kidney Disease Induced by Ischemia-Reperfusion Injury...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE299005\\n\",\n      \"SRP: SRP589942\\n\",\n      \"study_study_abstract: Neuropsychiatric complications including depression and cognitive decline develop in the years after traumatic brain injury (TBI), negatively affecting quality of life. Microglial and type 1 interferon (IFN-I) responses are associated with the transition from acute to chronic neuroinflammation after...\\n\",\n      \"study_study_title: Impaired cortical neuronal homeostasis and cognition after diffuse traumatic brain injury are dependent on microglia and type I interferon responses...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE297427\\n\",\n      \"SRP: SRP586001\\n\",\n      \"study_study_abstract: Osteosarcoma (OSA) has a dismal prognosis despite surgical resection and multiagent chemotherapy. While adoptive natural killer (NK) cell therapies have been successful in hematological malignancies, the application in solid tumors is challenging due to a tumor microenvironment (TME) that impairs NK...\\n\",\n      \"study_study_title: CXCL10-induced chemotaxis of ex vivo-expanded natural killer cells combined with NKTR-255 enhances anti-tumor efficacy in osteosarcoma...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE297299\\n\",\n      \"SRP: SRP585605\\n\",\n      \"study_study_abstract: Despite centuries of research, metastatic cancer remains incurable due to resistance against all conventional cancer therapeutics. Alternative strategies leveraging non-proliferative vulnerabilities in cancer are required to overcome cancer recurrence. Ferroptosis is an iron dependent cell death pat...\\n\",\n      \"study_study_title: Mismanagement of Cellular Iron Leads to Ferroptosis Susceptibility in Cancer Cells Surviving Chemotherapy...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE297023\\n\",\n      \"SRP: SRP584959\\n\",\n      \"study_study_abstract: Most cancers are diagnosed in people over the age of sixty, but little is known about how age impacts tumorigenesis. While aging is accompanied by mutation accumulation — widely understood to contribute to cancer risk — it is also associated with numerous other cellular and molecular changes likely ...\\n\",\n      \"study_study_title: Aging represses oncogenic KRAS-driven lung tumorigenesis and alters tumor suppression...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE296547\\n\",\n      \"SRP: SRP583610\\n\",\n      \"study_study_abstract: Human early embryos develop under physiological hypoxia, but how hypoxia regulates human lung organogenesis remains little known. We have investigated oxygen availability effects on the human lung epithelium using organoids. We find first-trimester lung epithelial progenitors remain undifferentiated...\\n\",\n      \"study_study_title: Hypoxia promotes airway differentiation in the human lung epithelium  [scRNAseq_hypoxia_AT2]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE296244\\n\",\n      \"SRP: SRP582847\\n\",\n      \"study_study_abstract: A novel, cost-effective nucleic acid (NA) isolation method for purifying total NA, DNA, or RNA from both two- and three-dimensional cell cultures has been developed at the Norwegian University of Science and Technology utilizing NAxtra magnetic nanoparticles. This method achieves comparable yields t...\\n\",\n      \"study_study_title: Rapid DNA and RNA isolation from few or single cells using low-cost NAxtra magnetic nanoparticles...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE295527\\n\",\n      \"SRP: SRP581094\\n\",\n      \"study_study_abstract: The rapid development of updated and new commercially available single-cell transcriptomics platforms is providing a range of experimental options.  Cost, sensitivity, throughput, flexibility, and ease of use influence that selection.  We performed a comprehensive comparison of single-cell transcrip...\\n\",\n      \"study_study_title: Evaluating the practical aspects and performance of commercial single-cell RNA sequencing technologies...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE292745\\n\",\n      \"SRP: SRP572670\\n\",\n      \"study_study_abstract: Cerebral hemodynamics are crucial for brain homeostasis and serve as a key proxy for brain activity. Although this process involves coordinated interaction between vessels, neurons and glial cells, its dysregulation in neuroinflammation is not well understood. We used in vivo mesoscopic functional u...\\n\",\n      \"study_study_title: Induction of hemodynamic traveling waves by glial-driven vasomotion in a rat model of neuroinflammation: implications for functional neuroimaging...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE291674\\n\",\n      \"SRP: SRP569656\\n\",\n      \"study_study_abstract: Loss-of-function variants of the ABCA7 gene are associated with the increased risk of Alzheimer's disease (AD). How neuronal ABCA7 contributes to AD pathogenesis is unknown. Using neuron-specific Abca7 knockout mice (nAbca7-/-) with or without 5×FAD amyloid model background and postmortem AD brains,...\\n\",\n      \"study_study_title: Neuronal ABCA7 deficiency aggravates mitochondrial dysfunction and neurodegeneration in Alzheimer's disease [5xFAD_snRNAseq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE289845\\n\",\n      \"SRP: SRP564833\\n\",\n      \"study_study_abstract: We performed single cell sequencing using the Parse Biosciences WT kit to evaluate changes in dendritic cell populations following induction of experimental autoimmune encephalomyelitis. Mice in this experiment previously received CD8+ T cells from donor mice that had been immunized with PLP178-191 ...\\n\",\n      \"study_study_title: Myelin-reactive CD8+ T cells influence conventional dendritic cell subsets towards a mature and regulatory phenotype in experimental autoimmune encephalomyelitis...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE287852\\n\",\n      \"SRP: SRP559435\\n\",\n      \"study_study_abstract: Transcription factor (TF) screens have enabled efficient production of a few cell types; however, engineering cell types that require complex TF combinations remains challenging. Here, we report an iterative, high-throughput single-cell TF screening method that enables identification of TF combinati...\\n\",\n      \"study_study_title: Iterative transcription factor screening enables rapid generation of microglia-like cells from human iPSC -Single cell transcriptome timecourse analysis of TFiMGLs after SCF-MCI  (SPI1, FLI1, CEBPA, CEBPB, IRF8, and Mef2C) induction....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE284207\\n\",\n      \"SRP: SRP551283\\n\",\n      \"study_study_abstract: A longstanding barrier in genome engineering with CRISPR-Cas9 has been the inability to measure Cas9 edit outcomes at single-cell resolution. Here we present Superb-seq, a new technology for joint measurement of on-target and off-target Cas9 edits and transcriptomes by single-cell RNA sequencing. In...\\n\",\n      \"study_study_title: Joint single-cell profiling of Cas9 edits and transcriptomes determines on- and off-target regulatory effects...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE283186\\n\",\n      \"SRP: SRP548416\\n\",\n      \"study_study_abstract: The human nephron is a highly patterned tubular structure. Approximately 1 million nephrons form in each kidney during embryonic and fetal development and develop specialized cells that regulate bodily fluid homeostasis, blood pressure, and urine secretion throughout life. This raises the question o...\\n\",\n      \"study_study_title: Axial Nephron Fate Switching Demonstrates a Plastic System Tunable on Demand...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE283038\\n\",\n      \"SRP: SRP548062\\n\",\n      \"study_study_abstract: CD4? T cells are believed to be essential for effective CD8? T cell responses against hepatotropic viruses like hepatitis B virus (HBV). However, the specific locations and the cellular and molecular mechanisms through which CD4? T cells help CD8? T cells remain unclear. In this study, we generated ...\\n\",\n      \"study_study_title: CD4+ T cells license Kupffer cells to reverse the CD8+ T cell dysfunction induced by hepatocellular priming...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE282851\\n\",\n      \"SRP: SRP547691\\n\",\n      \"study_study_abstract: Epigenetic dysregulation is widespread in cancer. However, the specific epigenetic regulators and the processes they control to drive cancer phenotypes are poorly understood. We employed a novel, scalable and high-throughput in vivo method to perform iterative functional screens of >250 epigenetic r...\\n\",\n      \"study_study_title: Functional mapping of epigenomic regulators uncovers coordinated tumor suppression by the HBO1 and MLL1 complexes [scRNA-seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE281932\\n\",\n      \"SRP: SRP545300\\n\",\n      \"study_study_abstract: Whilst M. bovis Bacillus Calmette-Guérin (BCG) therapy remains the gold-standard for treatment of high-risk non-muscle invasive bladder cancer (BC), 30-40% of patients fail therapy, resulting in disease recurrence and progression. Loss of glutathione-S-transferase theta 2 (GSTT2) expression has been...\\n\",\n      \"study_study_title: Glutathione-S-transferase theta 2 (GSTT2) modulates the tumor microenvironment and the response to BCG immunotherapy in a murine orthotopic model of bladder cancer...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE281535\\n\",\n      \"SRP: SRP544328\\n\",\n      \"study_study_abstract: Midbrain dopaminergic neuron (mDA) differentiation protocols for Parkinson's disease (PD) modeling and cell replacement therapy lack comprehensive transcriptomic evaluations against in vivo references. To address this, we constructed an integrated human fetal whole brain atlas and a midbrain subatla...\\n\",\n      \"study_study_title: BrainSTEM: A multi-resolution fetal brain atlas to assess the fidelity of human midbrain cultures...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE280717\\n\",\n      \"SRP: SRP542211\\n\",\n      \"study_study_abstract: Obesity affects the progress of lung cancer. To understand this more, we performed single-cell RNA sequencing of dissociated tumors of four mouse lung cancer cell-lines grown subcutaneously in adult male C57BL/6 mice with and without high-fat diet-induced obesity. Overall design: Groups (n = 6-8) of...\\n\",\n      \"study_study_title: Gene expression profile at single cell level of mouse lung cancer cell-line tumors grown subcutaneously in adult male C57BL/6 mice with and without high-fat diet-induced obesity...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE278923\\n\",\n      \"SRP: SRP536902\\n\",\n      \"study_study_abstract: In this study, we performed single-cell RNA sequencing of E6, E7, E8 and E9 chick cerebella to analyze diversity in in Purkinje cells during development. Overall design: Single-cell  suspensions of embryonic chick cerebellum were prepared following the protocols recommended by 10x Genomics. Subseque...\\n\",\n      \"study_study_title: Heterogeneity of Purkinje cells orchestrates cerebellar development....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE275127\\n\",\n      \"SRP: SRP527234\\n\",\n      \"study_study_abstract: An in vitro model of human meiosis would accelerate research into this important reproductive process and development of therapies for infertility. We have developed a method to induce meiosis starting from male or female human pluripotent stem cells. We demonstrate that DNMT1 inhibition, retinoid s...\\n\",\n      \"study_study_title: Induction of meiosis from human pluripotent stem cells [Bisulfite-seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE273089\\n\",\n      \"SRP: SRP522182\\n\",\n      \"study_study_abstract: Human embryos develop under physiological hypoxia, but how hypoxia directly affects human organogenesis remains unknown. We have investigated the effects of hypoxia on human lung epithelia using organoids. First trimester lung epithelial progenitors remain undifferentiated under normoxia, but initia...\\n\",\n      \"study_study_title: Hypoxia promotes airway differentiation in the human lung epithelium...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE272840\\n\",\n      \"SRP: SRP521574\\n\",\n      \"study_study_abstract: In search for broad-spectrum antivirals, we discovered a small molecule inhibitor, RMC-113, that potently suppresses the replication of multiple RNA viruses including SARS-CoV-2 in human lung organoids. We demonstrated selective dual inhibition of the lipid kinases PIP4K2C and PIKfyve by RMC-113 and...\\n\",\n      \"study_study_title: PIP4K2C inhibition reverses autophagic flux impairment induced by SARS-CoV-2...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE272713\\n\",\n      \"SRP: SRP521155\\n\",\n      \"study_study_abstract: Abstract: The effects of immunodeficiency associated with chronic HIV infection on COVID-19 disease and viral persistence have not been directly addressed in a controlled setting. In this pilot study, we exposed two pigtail macaques (PTMs) chronically infected with SIVmac239, exhibiting from very lo...\\n\",\n      \"study_study_title: The Impact of SIV-Induced Immunodeficiency on SARS-CoV-2 Disease, Viral Dynamics, and Antiviral Immune Response in a Nonhuman Primate Model of Coinfection...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE271203\\n\",\n      \"SRP: SRP517284\\n\",\n      \"study_study_abstract: Pregnant women may be prescribed opioid drugs for pain or may abuse these drugs. The placenta may be key to understanding how opioids cause adverse pregnancy outcomes. Maternal oxycodone (OXY) exposure of pregnant mice leads to disturbances in the layer of invasive parietal trophoblast giant cells (...\\n\",\n      \"study_study_title: Transcriptome Profile of Mouse Trophoblast Giant Cells:Effects of Oxycodone on these and other Placental Lineages...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE268385\\n\",\n      \"SRP: SRP510112\\n\",\n      \"study_study_abstract: An in vitro model of human meiosis would accelerate research into this important reproductive process and development of therapies for infertility. We have developed a method to induce meiosis starting from male or female human pluripotent stem cells. We demonstrate that DNMT1 inhibition, retinoid s...\\n\",\n      \"study_study_title: Induction of meiosis from human pluripotent stem cells...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE264678\\n\",\n      \"SRP: SRP503652\\n\",\n      \"study_study_abstract: The kidney maintains fluid homeostasis by reabsorbing essential compounds and excreting waste. Proximal tubule cells, crucial for reabsorbing sugars, ions, and amino acids, are highly susceptible to injury, often leading to pathologies necessitating dialysis or transplants. Human pluripotent stem ce...\\n\",\n      \"study_study_title: Controlling proximal nephron precursor differentiation to generate proximal-biased kidney organoids with emerging maturity [scRNA-Seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE263863\\n\",\n      \"SRP: SRP501450\\n\",\n      \"study_study_abstract: Obesity is a global pandemic and a key risk factor for several neurodegenerative diseases including Alzheimer's disease (AD), Parkinson's disease, or dementia. The neurovascular unit (NVU), essential for blood-brain barrier (BBB) integrity and comprised of endothelial cells, glial cells (microglia a...\\n\",\n      \"study_study_title: Effect of obesity on the neurovascular unit transcriptome in the female mice hippocampus using single nuclei RNA seq...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE263619\\n\",\n      \"SRP: SRP500730\\n\",\n      \"study_study_abstract: Muscle stem cells (MuSCs) are specialized cells that reside in adult skeletal muscle poised to repair muscle tissue. The ability of MuSCs to regenerate damaged tissues declines markedly with aging and in diseases such as Duchenne muscular dystrophy, but the underlying causes of MuSC dysfunction rema...\\n\",\n      \"study_study_title: Hydrogel biomaterials that stiffen and soften on demand reveal that skeletal muscle stem cells harbor a mechanical memory...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE262249\\n\",\n      \"SRP: SRP497297\\n\",\n      \"study_study_abstract: Obesity is a global pandemic and a key risk factor for several neurodegenerative diseases including Alzheimer's disease (AD), Parkinson's disease, or dementia. The neurovascular unit (NVU), essential for blood-brain barrier (BBB) integrity and comprised of endothelial cells, glial cells (microglia a...\\n\",\n      \"study_study_title: Single cell transcriptomics reveals obesity-induced endothelial and neurovascular dysfunction in brain: implications for cognitive decline...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE262111\\n\",\n      \"SRP: SRP496942\\n\",\n      \"study_study_abstract: Early childhood tumours arise from transformed embryonic cells, which often carry large copy number alterations (CNA). However, it remains unclear how CNAs contribute to embryonic tumourigenesis due to a lack of suitable models. Here we employ female human embryonic stem cell (hESC) differentiation ...\\n\",\n      \"study_study_title: A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrations [Parse scRNA-seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE221853\\n\",\n      \"SRP: SRP415300\\n\",\n      \"study_study_abstract: Early childhood tumours arise from transformed embryonic cells, which often carry large copy number alterations (CNA). However, it remains unclear how CNAs contribute to embryonic tumourigenesis due to a lack of suitable models. Here we employ female human embryonic stem cell (hESC) differentiation ...\\n\",\n      \"study_study_title: A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrations [10x scRNA-seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE256359\\n\",\n      \"SRP: SRP491042\\n\",\n      \"study_study_abstract: Results: Megakaryocytes gain immune characteristics over the course of murine bone marrow failure; Megakaryocytes with immune characteristics serve as antigen-presenting cells and suppress hematopoietic stem cell function. Conclusion: Our results demonstrate the acquisition of immune functions by ma...\\n\",\n      \"study_study_title: Mature Megakaryocytes Acquire Immune Characteristics in a Mouse Model of Aplastic Anemia...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE255851\\n\",\n      \"SRP: SRP489876\\n\",\n      \"study_study_abstract: To determine the gene expression changes in the retina of miR-204/miR-211 RPE conditional knockout (dKO) mice, we collected retina samples from dKO and controls animals at 6 months of degeneration, generated single-cell suspensions, and created scRNA-seq libraries (Parse Biosciences), and sequened t...\\n\",\n      \"study_study_title: Deletion of miR-204 and miR-211 in murine retinal pigment epithelium results in slow retinal degeneration...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE228214\\n\",\n      \"SRP: SRP429342\\n\",\n      \"study_study_abstract: Due to the limitations of available in vitro systems and animal models, we lack a detailed understanding of the pathogenetic mechanisms and have minimal treatment options for liver fibrosis. To overcome this barrier, we engineered a live cell imaging system that identifies collagen producing cells i...\\n\",\n      \"study_study_title: Characterization of Pro-Fibrotic Signaling Pathways in Human Hepatic Organoids...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE253642\\n\",\n      \"SRP: SRP484595\\n\",\n      \"study_study_abstract: Astrocyte diversity is greatly influenced by local environmental modulation. In this study, we analyzed the impact of ciliary deficient astrocytes on astrocytes' intercellular communications and neuronal transcriptomes in the brain. Our analysis revealed a broad disturbance of astrocyte intercellula...\\n\",\n      \"study_study_title: Single nuclei RNAseq datasets supporting the impact of primary cilia deficiency on astrocytes' intercellular connectivity and neuronal transcriptomes in the brain....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE253539\\n\",\n      \"SRP: SRP484450\\n\",\n      \"study_study_abstract: Osteoarthritis (OA) is a chronic, debilitating disease with no available disease-modifying drugs with end-stage surgery being the only treatment option. Biomarker identification in blood specimens of OA patients has hitherto been limited to serum proteins and bulk transcriptomics and epigenomic feat...\\n\",\n      \"study_study_title: Single-cell mass cytometry and transcriptomic profiling of circulating immune cells identifies an expansion of CD25hi switched memory B cells in Osteoarthritis...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE253406\\n\",\n      \"SRP: SRP484103\\n\",\n      \"study_study_abstract: Single-cell RNA sequencing experiments commonly use 10x Genomics kits due to their high-throughput capacity and standardized protocols. Recently, Parse Biosciences introduced an alternative technology that uses multiple in-situ barcoding rounds within standard 96-well plates. The Parse technology al...\\n\",\n      \"study_study_title: Split-pool combinatorial barcoding sequencing of murine immune cells...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE253230\\n\",\n      \"SRP: SRP483695\\n\",\n      \"study_study_abstract: Angelman syndrome is a neurodevelopmental disorder caused by (epi)genetic lesions of maternal UBE3A. Research has focused largely on the role of UBE3A in neurons due to its imprinting in that cell type. Yet, evidence suggests there may be broader neurodevelopmental impacts of UBE3A dysregulation. Hu...\\n\",\n      \"study_study_title: Loss of UBE3A impacts both neuronal and non-neuronal cells in human cerebral organoids....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE252604\\n\",\n      \"SRP: SRP482143\\n\",\n      \"study_study_abstract: Systemic immune responses induced by chronic hypercholesterolemia contribute to the initiation, progression and complications of atherosclerosis. However, the consequences of an alternate high fat diet and the associated variations in plasma cholesterol levels on atherosclerosis are unknown. To addr...\\n\",\n      \"study_study_title: Alternate high fat diet aggravates atherosclerosis through an IL1b-dependent reprogramming of neutrophil progenitors...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE252185\\n\",\n      \"SRP: SRP480475\\n\",\n      \"study_study_abstract: Autism spectrum disorder (ASD) is characterized by a complex etiology, with genetic determinants significantly influencing its manifestation. Among these, the Scn2a gene emerges as a pivotal player, crucially involved in oligodendrocyte (OL) function. The present study elucidates the underexplored r...\\n\",\n      \"study_study_title: Scn2a deletion disrupts oligodendroglia function: Implication for myelination, neural circuitry, and auditory hypersensitivity in ASD....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE250009\\n\",\n      \"SRP: SRP477682\\n\",\n      \"study_study_abstract: A major challenge to the study and treatment of neurogenetic syndromes is the difficulty in gaining access to live neurons from individuals with these disorders. Although other sources of stem cells are currently available for differentiation into neurons, these can involve invasive procedures and b...\\n\",\n      \"study_study_title: Single Cell Sequencing of Prader-Wlli Syndrome Dental Pulp Stem Cell-derived Neurons...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE249558\\n\",\n      \"SRP: SRP476292\\n\",\n      \"study_study_abstract: To define the regulatory role of Sox9 in intrahepatic biliary epithelium, we conducted single cell RNA-seq on biliary epithelial cells (BECs) from adult control (Sox9fl/fl) and conditional Sox9 knockout (Sox9cKO; Sox9fl/fl:Albumin-Cre) mice. Livers were dissociated to single cells and BECs isolated ...\\n\",\n      \"study_study_title: Single cell RNA-seq of Sox9-deficient intrahepatic biliary epithelial cells...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE172289\\n\",\n      \"SRP: SRP315237\\n\",\n      \"study_study_abstract: Our brains accommodate a largely folded cerebral cortex that associates to our advanced brain functions. Several theories have been proposed to explain the cortical folding process, reasoning the mechanical forces as neuronal tension in underlying layers, cellular expansion and glial progenitor's di...\\n\",\n      \"study_study_title: Gene regulatory landscape of cerebral cortex folding...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE246624\\n\",\n      \"SRP: SRP469371\\n\",\n      \"study_study_abstract: Single-cell RNA sequencing (scRNA-seq) has emerged as a powerful technique for investigating biological heterogeneity at the single-cell level in human systems and model organisms. Recent advances in scRNA-seq have enabled the pooling of cells from multiple samples into single libraries, thereby inc...\\n\",\n      \"study_study_title: Comparative analysis of single-cell RNA sequencing methods with and without sample multiplexing...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE246140\\n\",\n      \"SRP: SRP468167\\n\",\n      \"study_study_abstract: Multiple myeloma is a largely incurable and life-threatening malignancy of antibody-secreting plasma cells. An effective and widely available animal model that recapitulates human myeloma and related plasma cell disorders is lacking. We show that busulfan-conditioned hIL-6 transgenic NSG mice (NSG+h...\\n\",\n      \"study_study_title: Human IL-6 fosters long-term engraftment of human patient derived myeloma cells in immunodeficient mice...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE244321\\n\",\n      \"SRP: SRP463843\\n\",\n      \"study_study_abstract: We performed single cell RNA-sequencing (scRNA-Seq) of testes from bovine fetuses derived from either CRISPR/Cas9 NANOS3 knockout (KO; NANOS3 -/-) or wildtype control (NANOS3 +/+) embryos. The scRNA-Seq analysis showed a complete loss of primordial germ cells (PGCs) and gonocytes in NANOS3 KO fetal ...\\n\",\n      \"study_study_title: scRNA-Seq of bovine fetal testes derived from NANOS3 knockout and wildtype embryos...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE243135\\n\",\n      \"SRP: SRP460338\\n\",\n      \"study_study_abstract: A hallmark of idiopathic pulmonary fibrosis (IPF) and other interstitial lung diseases is dysregulated repair of the alveolar epithelium. The Hippo pathway effector transcription factors YAP and TAZ are implicated as essential for type 1 and type 2 alveolar epithelial cell (AT1 and AT2) differentiat...\\n\",\n      \"study_study_title: Epithelial Yap/Taz are required for functional alveolar regeneration following acute lung injury...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE241693\\n\",\n      \"SRP: SRP457001\\n\",\n      \"study_study_abstract: Type II diabetes mellitus (T2D) is a chronic metabolic disease, and a risk factor for cardiovascular disease and cerebrovascular dysfunction including vascular dementia. Sex differences in the prevalence of T2D, dementia, and global genomic changes in the brain have been observed; however, most stud...\\n\",\n      \"study_study_title: The global genomic profile of hippocampal endothelial cells in fefemale diabetic mice is associated with cognitive dysfunction via alterations in cell adhesion and vascular permeability....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE241543\\n\",\n      \"SRP: SRP456813\\n\",\n      \"study_study_abstract: Organs are the ensemble of different cell types in a complex architectural milieu. It is well-known that progression through fate decisions sets up the complex cellular makeup and architecture of an organ, but how that same architecture may impact on cell fate is less clear. We sought to examine thi...\\n\",\n      \"study_study_title: Tissue morphology influences the temporal program of human cerebral organoids...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE241142\\n\",\n      \"SRP: SRP455769\\n\",\n      \"study_study_abstract: Diabetes (DM) increases cardiovascular and cerebrovascular disease risk. However, the mechanism of DM-associated microvascular dysfunction and neuroinflammation remain unknown. We present a global assessment of endothelial cell-specific gene expression and integrated transcriptomics directly address...\\n\",\n      \"study_study_title: Single nuclei transcriptomics reveals altered endothelial cell function, permeability, and cognition in diabetic mice....\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE240096\\n\",\n      \"SRP: SRP453503\\n\",\n      \"study_study_abstract: Rationale: Multiciliated cell (MCC) loss/dysfunction is common in the small airways of patients with COPD but it is unclear if this contributes to COPD lung pathology. Objectives: To determine whether loss of MCCs causes a COPD-like phenotype in mice and explore a potential role for the transcriptio...\\n\",\n      \"study_study_title: Loss of p73 contributes to COPD...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE239347\\n\",\n      \"SRP: SRP451573\\n\",\n      \"study_study_abstract: We wanted to transcriptomically compare single cells taken from the retinas of C57BL6/J mice, Abca4-/-Rdh8-/- (dKO) mutant mice, and Abca4PV/PVRdh8-/- (PVR) mutant mice before and at an early (24-hour post-bleach) timepoint post-bleaching, to see if the two Abca4 mutants displayed different transcri...\\n\",\n      \"study_study_title: Distinct mouse models of Stargardt disease display differences in pharmacological targeting of ceramides and inflammatory responses...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE236902\\n\",\n      \"SRP: SRP448303\\n\",\n      \"study_study_abstract: Ocular lens development entails epithelial to fiber cell differentiation, defects in which cause congenital cataract. We report the first single-cell multiomic atlas of lens development, leveraging snRNA-seq, snATAC-seq, and CUT&RUN-seq to discover novel mechanisms of cell fate determination and cat...\\n\",\n      \"study_study_title: Integrated single-cell multiomics uncovers foundational regulatory mechanisms of lens development and pathology [scRNA-seq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE233606\\n\",\n      \"SRP: SRP439840\\n\",\n      \"study_study_abstract: This dataset describes human induced pluripotent stem cells as they differentiate into somite progenitors, and the consequences of dystrophin deficiency on the transcriptome of these single cells Overall design: hiPSCs from three cell lines (Healthy, DMD, CRISPR) were collected at Day 10 of a myogen...\\n\",\n      \"study_study_title: Dystrophin deficiency hampers cell state transitions during somite development...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE233519\\n\",\n      \"SRP: SRP439692\\n\",\n      \"study_study_abstract: Our parallel studies have shown that the OLIG2 inhibitor CT-179 and the TLR7/8 agonist resiquimod delivered in polyoxazoline nanoparticle (Pox-resiquimod) produce significant anti tumor effects when administered to mice with SHH medulloblastoma. To gain insight into the cellular events set in motion...\\n\",\n      \"study_study_title: scRNA-seq analysis of SHH medulloblastomas in Gfap-Cre/SmoM2 mice treated with CT-179 or Pox-resiquimod...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE229617\\n\",\n      \"SRP: SRP432473\\n\",\n      \"study_study_abstract: Functional precision medicine (FPM) aims to match the right patients to the right drugs by using specific features of the individual's cancer cells. Recently, FPM has been propelled by technologies that enable high throughput ex vivo drug profiling to tailor treatments for individual patients. Here,...\\n\",\n      \"study_study_title: Functional drug testing of pediatric acute lymphocytic leukemia cells by single-cell transcriptome sequencing for mapping cellular drug response...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE225497\\n\",\n      \"SRP: SRP423074\\n\",\n      \"study_study_abstract: Striatal neurons and striatal DA neuron fusions make up the mesolimbic pathway and respond to substances of abuse. We use scRNAseq to define the composition of our culture conditions and study their transcriptional responses to dopamine, cocaine, and morphine. Overall design: We use scRNAseq to defi...\\n\",\n      \"study_study_title: Gene expression profile of 2-D or 3-D neural cultures derived from an H1 hESC cell line...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE214374\\n\",\n      \"SRP: SRP400047\\n\",\n      \"study_study_abstract: Mammalian prion diseases are fatal and transmissible neurological conditions caused by the propagation of prions, self-replicating multimeric assemblies of misfolded forms of host cellular prion protein. Despite extensive studies investigating the changes in transcriptional profiles in prion disease...\\n\",\n      \"study_study_title: Single-cell transcriptomics of mammalian prion diseases identifies dynamic gene signatures shared between species [human_scRNAseq]...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE199498\\n\",\n      \"SRP: SRP366151\\n\",\n      \"study_study_abstract: We performed single cell RNA-sequencing of lungs from APOE knock-in mice in the absence of infection or four days post infection with SARS-CoV-2 MA10. Infected mice showed major remodeling of the cellular composition with expansion of myeloid cells and relative depletion of epithelial cells. In infe...\\n\",\n      \"study_study_title: scRNAseq of lungs from APOE knock-in mice with COVID-19...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\",\n      \"GSE: GSE183965\\n\",\n      \"SRP: SRP336717\\n\",\n      \"study_study_abstract: Dysregulation of macrophage populations at the wound site is responsible for the non-healing state of chronic wounds. The molecular mechanisms underlying macrophage dysfunction and its control in diabetes are largely unexplored on an epigenetic level. Here, we report that acetyl histone-H3 (Lys27), ...\\n\",\n      \"study_study_title: Acetylation State of Histone Core Defines Macrophage Dynamics in Diabetic Wounds...\\n\",\n      \"--------------------------------------------------------------------------------\\n\",\n      \"\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"if not df.empty:\\n\",\n    \"    title_cols = [\\n\",\n    \"        col\\n\",\n    \"        for col in df.columns\\n\",\n    \"        if \\\"study_title\\\" in col.lower() or \\\"study_abstract\\\" in col.lower()\\n\",\n    \"    ]\\n\",\n    \"\\n\",\n    \"    if title_cols and \\\"study_alias\\\" in df.columns:\\n\",\n    \"        # Get unique study information\\n\",\n    \"        study_info_cols = [\\\"study_alias\\\", \\\"study_accession\\\"] + title_cols\\n\",\n    \"        study_info_cols = [col for col in study_info_cols if col in df.columns]\\n\",\n    \"\\n\",\n    \"        study_info = df[study_info_cols].drop_duplicates(subset=[\\\"study_alias\\\"])\\n\",\n    \"\\n\",\n    \"        print(\\\"\\\\nStudy Titles and Descriptions:\\\")\\n\",\n    \"        print(f\\\"{'='*80}\\\\n\\\")\\n\",\n    \"\\n\",\n    \"        for idx, row in study_info.iterrows():\\n\",\n    \"            print(f\\\"GSE: {row['study_alias']}\\\")\\n\",\n    \"            print(f\\\"SRP: {row['study_accession']}\\\")\\n\",\n    \"\\n\",\n    \"            for col in title_cols:\\n\",\n    \"                if col in row and pd.notna(row[col]):\\n\",\n    \"                    print(f\\\"{col}: {row[col][:300]}...\\\")  # Truncate long descriptions\\n\",\n    \"            print(f\\\"{'-'*80}\\\\n\\\")\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Save Results\\n\",\n    \"\\n\",\n    \"Save the complete results to a file for further analysis:\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 8,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:43.976894Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:43.976787Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:44.516426Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:44.516061Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:43.976884Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Full results saved to: parse_bioscience_datasets.tsv\\n\",\n      \"Study summary saved to: parse_bioscience_studies_summary.tsv\\n\",\n      \"\\n\",\n      \"Total datasets found: 500\\n\",\n      \"Total unique studies: 62\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"if not df.empty:\\n\",\n    \"    # Save full results\\n\",\n    \"    output_file = \\\"parse_bioscience_datasets.tsv\\\"\\n\",\n    \"    df.to_csv(output_file, sep=\\\"\\\\t\\\", index=False)\\n\",\n    \"    print(f\\\"Full results saved to: {output_file}\\\")\\n\",\n    \"\\n\",\n    \"    # Also save the study-level summary\\n\",\n    \"    if \\\"studies_summary\\\" in locals():\\n\",\n    \"        summary_file = \\\"parse_bioscience_studies_summary.tsv\\\"\\n\",\n    \"        studies_summary.to_csv(summary_file, sep=\\\"\\\\t\\\", index=False)\\n\",\n    \"        print(f\\\"Study summary saved to: {summary_file}\\\")\\n\",\n    \"\\n\",\n    \"    print(f\\\"\\\\nTotal datasets found: {len(df)}\\\")\\n\",\n    \"    print(\\n\",\n    \"        f\\\"Total unique studies: {len(unique_studies) if 'unique_studies' in locals() else 'N/A'}\\\"\\n\",\n    \"    )\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Alternative Search Strategies\\n\",\n    \"\\n\",\n    \"Since Parse Bioscience datasets might not always explicitly mention \\\"Parse Bioscience\\\" in metadata, here are alternative search strategies:\\n\",\n    \"\\n\",\n    \"### 1. Search for SPLiT-seq (Parse's technology)\\n\",\n    \"Parse Biosciences uses SPLiT-seq (split-pool ligation-based transcriptome sequencing) technology.\"\n   ]\n  },\n  {\n   \"cell_type\": \"code\",\n   \"execution_count\": 9,\n   \"metadata\": {\n    \"execution\": {\n     \"iopub.execute_input\": \"2025-10-20T10:57:44.517202Z\",\n     \"iopub.status.busy\": \"2025-10-20T10:57:44.517099Z\",\n     \"iopub.status.idle\": \"2025-10-20T10:57:56.107603Z\",\n     \"shell.execute_reply\": \"2025-10-20T10:57:56.107145Z\",\n     \"shell.execute_reply.started\": \"2025-10-20T10:57:44.517191Z\"\n    }\n   },\n   \"outputs\": [\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Searching for SPLiT-seq / combinatorial indexing datasets...\\n\",\n      \"This may include Parse Bioscience and similar technologies.\\n\",\n      \"\\n\"\n     ]\n    },\n    {\n     \"name\": \"stderr\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"100%|██████████████████████████████████████████████████████████████████████████| 100/100 [00:04<00:00, 20.64it/s]\\n\"\n     ]\n    },\n    {\n     \"name\": \"stdout\",\n     \"output_type\": \"stream\",\n     \"text\": [\n      \"Found 100 entries with SPLiT-seq/combinatorial indexing\\n\",\n      \"\\n\",\n      \"================================================================================\\n\",\n      \"Other useful search terms for Parse/single-cell datasets:\\n\",\n      \"- 'Parse Evercode' (Parse's platform name)\\n\",\n      \"- 'combinatorial barcoding'\\n\",\n      \"- Specific organisms: 'Parse Bioscience Homo sapiens'\\n\",\n      \"================================================================================\\n\"\n     ]\n    }\n   ],\n   \"source\": [\n    \"# Search for SPLiT-seq technology\\n\",\n    \"print(\\\"Searching for SPLiT-seq / combinatorial indexing datasets...\\\")\\n\",\n    \"print(\\\"This may include Parse Bioscience and similar technologies.\\\\n\\\")\\n\",\n    \"\\n\",\n    \"split_seq_instance = GeoSearch(\\n\",\n    \"    verbosity=2,\\n\",\n    \"    return_max=100,\\n\",\n    \"    geo_query=\\\"SPLiT-seq OR split-seq OR combinatorial indexing single cell\\\",\\n\",\n    \")\\n\",\n    \"\\n\",\n    \"split_seq_instance.search()\\n\",\n    \"split_seq_df = split_seq_instance.get_df()\\n\",\n    \"\\n\",\n    \"if not split_seq_df.empty:\\n\",\n    \"    print(f\\\"Found {len(split_seq_df)} entries with SPLiT-seq/combinatorial indexing\\\")\\n\",\n    \"\\n\",\n    \"    if \\\"study_alias\\\" in split_seq_df.columns:\\n\",\n    \"        split_seq_studies = split_seq_df[\\\"study_alias\\\"].unique()\\n\",\n    \"        print(f\\\"Unique studies: {len(split_seq_studies)}\\\")\\n\",\n    \"        print(f\\\"\\\\nGSE IDs: {sorted(split_seq_studies)}\\\")\\n\",\n    \"\\n\",\n    \"        # Show organisms\\n\",\n    \"        if \\\"sample_scientific_name\\\" in split_seq_df.columns:\\n\",\n    \"            print(f\\\"\\\\nOrganisms:\\\")\\n\",\n    \"            print(split_seq_df[\\\"sample_scientific_name\\\"].value_counts())\\n\",\n    \"else:\\n\",\n    \"    print(\\\"No results found with SPLiT-seq search\\\")\\n\",\n    \"\\n\",\n    \"# You can also try other search terms\\n\",\n    \"print(\\\"\\\\n\\\" + \\\"=\\\" * 80)\\n\",\n    \"print(\\\"Other useful search terms for Parse/single-cell datasets:\\\")\\n\",\n    \"print(\\\"- 'Parse Evercode' (Parse's platform name)\\\")\\n\",\n    \"print(\\\"- 'combinatorial barcoding'\\\")\\n\",\n    \"print(\\\"- Specific organisms: 'Parse Bioscience Homo sapiens'\\\")\\n\",\n    \"print(\\\"=\\\" * 80)\"\n   ]\n  },\n  {\n   \"cell_type\": \"markdown\",\n   \"metadata\": {},\n   \"source\": [\n    \"## Command Line Usage\\n\",\n    \"\\n\",\n    \"You can also perform this search from the command line:\\n\",\n    \"\\n\",\n    \"```bash\\n\",\n    \"## # Basic search for Parse Bioscience datasets\\n\",\n    \"pysradb search --db geo \\\\\\n\",\n    \"  --geo-query \\\"Parse Bioscience\\\" \\\\\\n\",\n    \"  --max 500 \\\\\\n\",\n    \"  --verbosity 3 \\\\\\n\",\n    \"  --saveto parse_bioscience_results.tsv\\n\",\n    \"\\n\",\n    \"## # Search for SPLiT-seq technology\\n\",\n    \"pysradb search --db geo \\\\\\n\",\n    \"  --geo-query \\\"SPLiT-seq OR split-seq\\\" \\\\\\n\",\n    \"  --max 200 \\\\\\n\",\n    \"  --verbosity 2 \\\\\\n\",\n    \"  --saveto split_seq_results.tsv\\n\",\n    \"\\n\",\n    \"## # Search with organism filter\\n\",\n    \"pysradb search --db geo \\\\\\n\",\n    \"  --geo-query \\\"Parse Bioscience\\\" \\\\\\n\",\n    \"  --organism \\\"Homo sapiens\\\" \\\\\\n\",\n    \"  --max 200 \\\\\\n\",\n    \"  --saveto parse_human_results.tsv\\n\",\n    \"\\n\",\n    \"## # Note: Date filtering can be added with --publication-date flag\\n\",\n    \"## # but may miss some results due to how GEO indexes publication dates\\n\",\n    \"## # Example: --publication-date 01-01-2020:31-12-2024\\n\",\n    \"```\"\n   ]\n  }\n ],\n \"metadata\": {\n  \"kernelspec\": {\n   \"display_name\": \"Python 3\",\n   \"language\": \"python\",\n   \"name\": \"python3\"\n  },\n  \"language_info\": {\n   \"codemirror_mode\": {\n    \"name\": \"ipython\",\n    \"version\": 3\n   },\n   \"file_extension\": \".py\",\n   \"mimetype\": \"text/x-python\",\n   \"name\": \"python\",\n   \"nbconvert_exporter\": \"python\",\n   \"pygments_lexer\": \"ipython3\",\n   \"version\": \"3.11.12\"\n  }\n },\n \"nbformat\": 4,\n \"nbformat_minor\": 4\n}"
  },
  {
    "path": "notebooks/README.md",
    "content": "# Notebooks demonstrating functionalities of pysradb\n\n1. [Python API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/01.Python-API_demo.ipynb)\n2. [Downloading datasets from SRA - command line](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/02.Commandline_download.ipynb)\n3. [Parallely download multiple datasets - Python API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/03.ParallelDownload.ipynb)\n4. [Converting SRA-to-fastq - command line (requires conda)](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/04.SRA_to_fastq_conda.ipynb)\n5. [Downloading subsets of a project - Python API](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/05.Downloading_subsets_of_a_project.ipynb)\n6. [Metadata for multiple SRPs](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/06.Multiple_SRPs.ipynb)\n7. [Searching SRA/GEO/ENA](https://colab.research.google.com/github/saketkc/pysradb/blob/master/notebooks/07.Query_Search.ipynb)\n\n"
  },
  {
    "path": "pyproject.toml",
    "content": "[build-system]\nrequires = [\"hatchling\"]\nbuild-backend = \"hatchling.build\"\n\n[project]\nname = \"pysradb\"\ndynamic = [\"version\"]\ndescription = \"A Python package for interacting with SRAdb and downloading datasets from SRA/ENA/GEO\"\nreadme = \"README.md\"\nlicense = {file = \"LICENSE\"}\nrequires-python = \">=3.9\"\nauthors = [{ name = \"Saket Choudhary\", email = \"saketkc@gmail.com\" }]\nclassifiers = [\n    \"Development Status :: 5 - Production/Stable\",\n    \"Intended Audience :: Science/Research\",\n    \"License :: OSI Approved :: BSD License\",\n    \"Programming Language :: Python :: 3\",\n    \"Programming Language :: Python :: 3.9\",\n    \"Programming Language :: Python :: 3.10\",\n    \"Programming Language :: Python :: 3.11\",\n    \"Programming Language :: Python :: 3.12\",\n    \"Programming Language :: Python :: 3.13\",\n    \"Topic :: Scientific/Engineering :: Bio-Informatics\",\n]\ndependencies = [\n    \"lxml>=4.6.3\",\n    \"pandas>=1.3.2\",\n    \"requests>=2.26.0\",\n    \"rich>=10.0.0\",\n    \"tqdm>=4.62.1\",\n    \"xmltodict>=0.12.0\",\n]\n\n[project.optional-dependencies]\nenrichment = [\"instructor>=1.0.0\", \"pydantic>=2.0.0\", \"sentence-transformers>=2.0.0\"]\ndocs = [\n    \"sphinx>=4.0\",\n    \"furo>=2023.0.0\",\n    \"sphinx-tabs>=3.4.1\",\n    \"numpydoc>=1.5.0\",\n    \"nbsphinx>=0.8.0\",\n    \"myst-parser>=0.18.0\",\n    \"ipython>=7.0\",\n    \"sphinxcontrib-gtagjs>=0.2\",\n    \"sphinx-panels>=0.5.2\",\n]\nall = [\n    \"pysradb[enrichment,docs]\",\n]\n\n[project.scripts]\npysradb = \"pysradb.cli:parse_args\"\n\n[project.urls]\nHomepage = \"https://saket-choudhary.me/pysradb\"\n\n[tool.hatch.version]\npath = \"pysradb/__init__.py\"\n"
  },
  {
    "path": "pysradb/__init__.py",
    "content": "# -*- coding: utf-8 -*-\n\"\"\"Top-level package for pysradb.\"\"\"\n\n__author__ = \"\"\"Saket Choudhary\"\"\"\n__email__ = \"saketkc@gmail.com\"\n__version__ = \"3.0.0.dev0\"\n\nfrom .filter_attrs import expand_sample_attribute_columns\nfrom .geoweb import GEOweb, download_geo_matrix, parse_geo_matrix_to_tsv\nfrom .sraweb import SRAweb\n"
  },
  {
    "path": "pysradb/__main__.py",
    "content": "import sys\n\nfrom .cli import parse_args\n\nif __name__ == \"__main__\":\n    parse_args(sys.argv[1:])\n"
  },
  {
    "path": "pysradb/cli.py",
    "content": "\"\"\"Command line interface for pysradb\"\"\"\n\nimport argparse\nimport os\nimport re\nimport sys\nimport warnings\nfrom io import StringIO\nfrom textwrap import dedent\n\nimport pandas as pd\nfrom rich.columns import Columns\nfrom rich.console import Console\nfrom rich.panel import Panel\nfrom rich.table import Table\nfrom rich.text import Text\n\nfrom . import __version__\nfrom .exceptions import IncorrectFieldException, MissingQueryException\nfrom .geoweb import GEOweb, download_geo_matrix, parse_geo_matrix_to_tsv\nfrom .search import EnaSearch, GeoSearch, SraSearch\nfrom .sraweb import SRAweb\nfrom .utils import confirm\n\npd.set_option(\"display.max_rows\", None)\npd.set_option(\"display.max_columns\", None)\n\nwarnings.simplefilter(action=\"ignore\", category=FutureWarning)\n\nconsole = Console()\n\n\nclass CustomFormatterArgP(\n    argparse.ArgumentDefaultsHelpFormatter, argparse.RawDescriptionHelpFormatter\n):\n    pass\n\n\nclass ArgParser(argparse.ArgumentParser):\n    def error(self, message):\n        sys.stderr.write(\"error: %s\\n\" % message)\n        self.print_help()\n        sys.exit(2)\n\n\ndef pretty_print_df(df, include_header=True):\n    \"\"\"Pretty print dataframe using rich formatting\"\"\"\n\n    def format_value(v):\n        \"\"\"Convert value to string, handling None and pd.NA\"\"\"\n        if v is None or pd.isna(v):\n            return \"[dim]-[/dim]\"\n        return str(v)\n\n    if df.empty:\n        console.print(\"[bright_black]No results found[/bright_black]\")\n        return\n\n    try:\n        terminal_width = console.width\n    except:\n        terminal_width = 80  # fallback width\n\n    num_columns = len(df.columns)\n    min_col_width = 12  # minimum width per column for readability\n    padding = 2  # padding between columns\n    border_space = 4  # table borders\n\n    # how many columns fit\n    max_cols_per_table = (terminal_width - border_space) // (min_col_width + padding)\n\n    # chuenk\n    if num_columns > max_cols_per_table:\n        console.print(\n            f\"[bright_black]Displaying {num_columns} columns in chunks of {max_cols_per_table}[/bright_black]\"\n        )\n        console.print()\n\n        for i in range(0, num_columns, max_cols_per_table):\n            chunk_cols = df.columns[i : i + max_cols_per_table]\n            chunk_df = df[chunk_cols]\n\n            console.print(\n                f\"[bright_blue]Columns {i+1}-{min(i+max_cols_per_table, num_columns)}:[/bright_blue]\"\n            )\n            _create_table(chunk_df, terminal_width, include_header, format_value)\n            console.print()\n    else:\n        _create_table(df, terminal_width, include_header, format_value)\n\n\ndef _create_table(df, terminal_width, include_header, format_value):\n    \"\"\"Helper function to create a rich table with appropriate sizing\"\"\"\n\n    num_columns = len(df.columns)\n    min_col_width = 12\n    padding = 2\n    border_space = 4\n\n    available_width = terminal_width - border_space - (padding * (num_columns - 1))\n\n    col_widths = []\n    for column in df.columns:\n        col_name = str(column)\n        sample_data = df[column].head(10).astype(str)\n        max_content_len = max(\n            len(col_name), sample_data.str.len().max() if len(sample_data) > 0 else 0\n        )\n        col_widths.append(max_content_len)\n\n    total_content_width = sum(col_widths)\n    if total_content_width > available_width:\n        scale_factor = available_width / total_content_width\n        final_widths = [max(min_col_width, int(w * scale_factor)) for w in col_widths]\n    else:\n        final_widths = [\n            max(min_col_width, min(w, available_width // num_columns + 5))\n            for w in col_widths\n        ]\n\n    table = Table(\n        show_header=include_header,\n        header_style=\"bold bright_blue\",\n        border_style=\"bright_black\",\n        show_lines=True,\n        padding=(0, 1),\n        box=None,\n        collapse_padding=False,\n        width=terminal_width - 2,\n    )\n\n    for i, column in enumerate(df.columns):\n        table.add_column(\n            str(column),\n            style=\"dim\",\n            no_wrap=False,\n            overflow=\"fold\",\n            width=final_widths[i],\n            header_style=\"bold bright_blue\",\n        )\n\n    for index, row in df.iterrows():\n        formatted_values = [format_value(v) for v in row.tolist()]\n        table.add_row(*formatted_values)\n\n    console.print(table)\n\n\ndef _print_save_df(df, saveto=None):\n    \"\"\"Save dataframe to file or print with rich formatting.\n\n    Automatically detects format from file extension:\n    - .csv: Comma-separated values\n    - .tsv: Tab-separated values\n    - .txt: Tab-separated values (text format)\n    - .json: JSON format\n    \"\"\"\n    if saveto:\n        file_ext = os.path.splitext(saveto)[1].lower()\n\n        if file_ext == \".csv\":\n            df.to_csv(saveto, index=False, header=True)\n            console.print(\n                f\"[bright_green]✓[/bright_green] Saved to CSV: [bright_blue]{saveto}[/bright_blue]\"\n            )\n        elif file_ext == \".json\":\n            df.to_json(saveto, orient=\"records\", indent=2)\n            console.print(\n                f\"[bright_green]✓[/bright_green] Saved to JSON: [bright_blue]{saveto}[/bright_blue]\"\n            )\n        elif file_ext in [\".tsv\", \".txt\"]:\n            df.to_csv(saveto, index=False, header=True, sep=\"\\t\")\n            console.print(\n                f\"[bright_green]✓[/bright_green] Saved to TSV: [bright_blue]{saveto}[/bright_blue]\"\n            )\n        else:\n            df.to_csv(saveto, index=False, header=True, sep=\"\\t\")\n            console.print(\n                f\"[bright_green]✓[/bright_green] Saved to file: [bright_blue]{saveto}[/bright_blue]\"\n            )\n    else:\n        if df is None:\n            console.print(\"[bright_black]No data to display[/bright_black]\")\n        elif len(df.index):\n            pretty_print_df(df)\n\n\n###################### metadata ##############################\ndef metadata(\n    srp_id, assay, desc, detailed, expand, saveto, enrich=False, enrich_backend=None\n):\n    # Validate that at least one ID was provided\n    if not srp_id:\n        console.print(\n            \"[red]Error: No accession IDs provided. Please provide one or more SRP/GSE IDs.[/red]\"\n        )\n        console.print(\"[yellow]Usage: pysradb metadata SRP000001 [SRP000002 ...]\")\n        console.print(\"       pysradb metadata GSE123456[/yellow]\")\n        return\n\n    client = SRAweb()\n\n    srp_ids = []\n    gse_ids = []\n    for accession in srp_id:\n        if isinstance(accession, str) and accession.upper().startswith(\"GSE\"):\n            gse_ids.append(accession)\n        else:\n            srp_ids.append(accession)\n\n    metadata_frames = []\n    if srp_ids:\n        srp_metadata = client.sra_metadata(\n            srp_ids if len(srp_ids) > 1 else srp_ids[0],\n            assay=assay,\n            detailed=detailed,\n            sample_attribute=desc,\n            expand_sample_attributes=expand,\n            enrich=enrich,\n            enrich_backend=enrich_backend if enrich_backend else \"ollama/phi3\",\n        )\n        if srp_metadata is not None:\n            metadata_frames.append(srp_metadata)\n\n    if gse_ids:\n        geo_metadata_df = client.geo_metadata(\n            gse_ids if len(gse_ids) > 1 else gse_ids[0],\n            sample_attribute=desc,\n            detailed=detailed,\n            enrich=enrich,\n            enrich_backend=enrich_backend if enrich_backend else \"ollama/phi3\",\n        )\n        if not geo_metadata_df.empty:\n            metadata_frames.append(geo_metadata_df)\n\n    if metadata_frames:\n        df = pd.concat(metadata_frames, ignore_index=True, sort=False)\n    else:\n        df = pd.DataFrame()\n\n    _print_save_df(df, saveto)\n\n\n################################################################\n\n\n################# download ##########################\ndef download(\n    out_dir,\n    srx,\n    srp,\n    geo,\n    skip_confirmation,\n    col=\"public_url\",\n    use_ascp=False,\n    threads=1,\n):\n    if out_dir is None:\n        out_dir = os.path.join(os.getcwd(), \"pysradb_downloads\")\n    client = SRAweb()\n    geoweb = GEOweb()\n    # This block is triggered only if no -p or -g arguments are provided.\n    # In this case, the input is taken from the pipe and assumed to be SRA, not GEO\n    # TODO: at some point, we need to fix this\n    if not srp and not geo:\n        df = pd.read_csv(sys.stdin, sep=\"\\t\")\n        client.download(\n            df=df,\n            out_dir=out_dir,\n            filter_by_srx=srx,\n            skip_confirmation=True,\n            use_ascp=use_ascp,\n            url_col=col,\n            threads=threads,\n        )\n    # This block is triggered for downloads using the -p argument\n    if srp:\n        for srp_x in srp:\n            metadata = client.sra_metadata(srp_x, detailed=True)\n            client.download(\n                df=metadata,\n                out_dir=out_dir,\n                filter_by_srx=srx,\n                skip_confirmation=skip_confirmation,\n                use_ascp=use_ascp,\n                threads=threads,\n            )\n    # This block is triggered for downloads using the -g argument\n    if geo:\n        for geo_x in geo:\n            links, root_url = geoweb.get_download_links(geo_x)\n            geoweb.download(links=links, root_url=root_url, gse=geo_x, out_dir=out_dir)\n\n\n#########################################################\n\n\n######################### search #################################\ndef search(saveto, db, verbosity, return_max, fields):\n    if fields[\"run_description\"]:\n        verbosity = 1\n    if fields[\"detailed\"]:\n        verbosity = 3\n    try:\n        if db == \"ena\":\n            instance = EnaSearch(\n                verbosity,\n                return_max,\n                fields[\"query\"],\n                fields[\"accession\"],\n                fields[\"organism\"],\n                fields[\"layout\"],\n                fields[\"mbases\"],\n                fields[\"publication_date\"],\n                fields[\"platform\"],\n                fields[\"selection\"],\n                fields[\"source\"],\n                fields[\"strategy\"],\n                fields[\"title\"],\n            )\n            instance.search()\n        elif db == \"geo\":\n            instance = GeoSearch(\n                verbosity,\n                return_max,\n                fields[\"query\"],\n                fields[\"accession\"],\n                fields[\"organism\"],\n                fields[\"layout\"],\n                fields[\"mbases\"],\n                fields[\"publication_date\"],\n                fields[\"platform\"],\n                fields[\"selection\"],\n                fields[\"source\"],\n                fields[\"strategy\"],\n                fields[\"title\"],\n                fields[\"geo_query\"],\n                fields[\"geo_dataset_type\"],\n                fields[\"geo_entry_type\"],\n            )\n            instance.search()\n        else:\n            instance = SraSearch(\n                verbosity,\n                return_max,\n                fields[\"query\"],\n                fields[\"accession\"],\n                fields[\"organism\"],\n                fields[\"layout\"],\n                fields[\"mbases\"],\n                fields[\"publication_date\"],\n                fields[\"platform\"],\n                fields[\"selection\"],\n                fields[\"source\"],\n                fields[\"strategy\"],\n                fields[\"title\"],\n            )\n            instance.search()\n    except (MissingQueryException, IncorrectFieldException) as e:\n        console.print(f\"[bright_red]Error:[/bright_red] {e}\")\n        return\n    if fields[\"stats\"]:\n        instance.show_result_statistics()\n    if fields[\"graphs\"]:\n        graph_types = tuple(fields[\"graphs\"].split())\n        instance.visualise_results(graph_types, False)\n    _print_save_df(instance.get_df(), saveto)\n\n\ndef get_geo_search_info():\n    info_text = GeoSearch.info()\n    panel = Panel(\n        info_text,\n        title=\"[bold bright_blue]GeoSearch Information[/bold bright_blue]\",\n        border_style=\"bright_blue\",\n        padding=(1, 2),\n    )\n    console.print(panel)\n\n\n####################################################################\n\n\n######################### gse-to-gsm ###############################\ndef gse_to_gsm(gse_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gse_to_gsm(\n        gse_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n####################################################################\n\n\n######################## gse-to-srp ################################\ndef gse_to_srp(gse_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gse_to_srp(\n        gse_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n######################################################################\n\n\n######################### gsm-to-gse #################################\ndef gsm_to_gse(gsm_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gsm_to_gse(\n        gsm_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n########################################################################\n\n\n############################ gsm-to-srp ################################\ndef gsm_to_srp(gsm_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gsm_to_srp(\n        gsm_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n########################################################################\n\n\n############################ gsm-to-srr ################################\ndef gsm_to_srr(gsm_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gsm_to_srr(\n        gsm_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n########################################################################\n\n\n############################ gsm-to-srs ################################\ndef gsm_to_srs(gsm_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gsm_to_srs(\n        gsm_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n########################################################################\n\n\n############################# gsm-to-srx ###############################\ndef gsm_to_srx(gsm_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.gsm_to_srx(\n        gsm_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srp-to-gse ##################################\ndef srp_to_gse(srp_id, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srp_to_gse(\n        srp_id,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srp-to-srr ##################################\ndef srp_to_srr(srp_id, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srp_to_srr(\n        srp_id,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srp-to-srs ##################################\ndef srp_to_srs(srp_id, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srp_to_srs(\n        srp_id,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srp-to-srx ##################################\ndef srp_to_srx(srp_id, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srp_to_srx(\n        srp_id,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srr-to-gsm ##################################\ndef srr_to_gsm(srr_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srr_to_gsm(\n        srr_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n########################################################################\n\n\n########################### srr-to-srp ##################################\ndef srr_to_srp(srr_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srr_to_srp(\n        srr_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srr-to-srs ##################################\ndef srr_to_srs(srr_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srr_to_srs(\n        srr_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srr-to-srx ##################################\ndef srr_to_srx(srr_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srr_to_srx(\n        srr_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srs-to-gsm ##################################\ndef srs_to_gsm(srs_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srs_to_gsm(\n        srs_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srs-to-srx ##################################\ndef srs_to_srx(srs_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srs_to_srx(\n        srs_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srx-to-srp ##################################\ndef srx_to_srp(srx_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srx_to_srp(\n        srx_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srx-to-srr ##################################\ndef srx_to_srr(srx_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srx_to_srr(\n        srx_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### srx-to-srs ##################################\ndef srx_to_srs(srx_ids, saveto, detailed, desc, expand):\n    client = SRAweb()\n    df = client.srx_to_srs(\n        srx_ids,\n        detailed=detailed,\n        sample_attribute=desc,\n        expand_sample_attributes=expand,\n    )\n    _print_save_df(df, saveto)\n\n\ndef srp_to_pmid(srp_ids, saveto):\n    client = SRAweb()\n    df = client.srp_to_pmid(srp_ids)\n    _print_save_df(df, saveto)\n\n\ndef sra_to_pmid(sra_ids, saveto):\n    \"\"\"Backward compatibility wrapper for sra_to_pmid\"\"\"\n    client = SRAweb()\n    df = client.sra_to_pmid(sra_ids)\n    _print_save_df(df, saveto)\n\n\ndef gse_to_pmid(gse_ids, saveto):\n    client = SRAweb()\n    df = client.gse_to_pmid(gse_ids)\n    _print_save_df(df, saveto)\n\n\ndef pmid_to_gse(pmid_ids, saveto):\n    client = SRAweb()\n    df = client.pmid_to_gse(pmid_ids)\n    _print_save_df(df, saveto)\n\n\ndef pmid_to_srp(pmid_ids, saveto):\n    client = SRAweb()\n    df = client.pmid_to_srp(pmid_ids)\n    _print_save_df(df, saveto)\n\n\ndef pmc_to_identifiers(pmc_ids, saveto):\n    client = SRAweb()\n    df = client.pmc_to_identifiers(pmc_ids)\n    _print_save_df(df, saveto)\n\n\ndef pmid_to_identifiers(pmid_ids, saveto):\n    client = SRAweb()\n    df = client.pmid_to_identifiers(pmid_ids)\n    _print_save_df(df, saveto)\n\n\ndef doi_to_gse(doi_ids, saveto):\n    client = SRAweb()\n    df = client.doi_to_gse(doi_ids)\n    _print_save_df(df, saveto)\n\n\ndef doi_to_srp(doi_ids, saveto):\n    client = SRAweb()\n    df = client.doi_to_srp(doi_ids)\n    _print_save_df(df, saveto)\n\n\ndef doi_to_identifiers(doi_ids, saveto):\n    client = SRAweb()\n    df = client.doi_to_identifiers(doi_ids)\n    _print_save_df(df, saveto)\n\n\n#########################################################################\n\n\n########################### geo-matrix ##################################\ndef geo_matrix(accession, to_tsv, output_dir):\n    # Download the GEO Matrix file\n    matrix_file = download_geo_matrix(accession, output_dir=output_dir)\n    console.print(\n        f\"[bright_green]✓[/bright_green] Downloaded GEO Matrix file to: [bright_blue]{matrix_file}[/bright_blue]\"\n    )\n\n    # If --to-tsv is specified, parse the file to TSV\n    if to_tsv:\n        output_tsv = os.path.join(output_dir, f\"{accession}_matrix.tsv\")\n        df = parse_geo_matrix_to_tsv(matrix_file, output_tsv)\n        console.print(\n            f\"[bright_green]✓[/bright_green] Parsed GEO Matrix file to TSV: [bright_blue]{output_tsv}[/bright_blue]\"\n        )\n\n\n#########################################################################\n\n\ndef parse_args(args=None):\n    \"\"\"Argument parser\"\"\"\n    parser = ArgParser(\n        description=dedent(\n            \"\"\"\\\n    pysradb: Query NGS metadata and data from NCBI Sequence Read Archive.\n    version: {}.\n    Citation: 10.12688/f1000research.18676.1\"\"\".format(\n                __version__\n            )\n        ),\n        formatter_class=CustomFormatterArgP,\n    )\n\n    # pysradb subcommands\n    subparsers = parser.add_subparsers(title=\"subcommands\", dest=\"command\")\n\n    # pysradb --version\n    parser.add_argument(\n        \"--version\",\n        action=\"version\",\n        version=\"%(prog)s {version}\".format(version=__version__),\n    )\n\n    # pysradb --citation\n    parser.add_argument(\n        \"--citation\",\n        action=\"version\",\n        version=dedent(\n            \"\"\"\n        Choudhary, Saket. \"pysradb: A Python Package to Query next-Generation Sequencing Metadata and Data from NCBI Sequence Read Archive.\" F1000Research, vol. 8, F1000 (Faculty of 1000 Ltd), Apr. 2019, p. 532 (https://f1000research.com/articles/8-532/v1)\n\n        @article{Choudhary2019,\n        doi = {10.12688/f1000research.18676.1},\n        url = {https://doi.org/10.12688/f1000research.18676.1},\n        year = {2019},\n        month = apr,\n        publisher = {F1000 (Faculty of 1000 Ltd)},\n        volume = {8},\n        pages = {532},\n        author = {Saket Choudhary},\n        title = {pysradb: A {P}ython package to query next-generation sequencing metadata and data from {NCBI} {S}equence {R}ead {A}rchive},\n        journal = {F1000Research}\n        }\n        \"\"\"\n        ),\n        help=\"how to cite\",\n    )\n\n    # pysradb metadata\n    subparser = subparsers.add_parser(\n        \"metadata\", help=\"Fetch metadata for SRA project (SRPnnnn)\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save metadata dataframe to file\")\n    subparser.add_argument(\n        \"--assay\", action=\"store_true\", help=\"Include assay type in output\"\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\", action=\"store_true\", help=\"Display detailed metadata table\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\n        \"--enrich\",\n        action=\"store_true\",\n        help=\"Enrich metadata with standardized biological attributes using LLMs\",\n    )\n    subparser.add_argument(\n        \"--enrich-backend\",\n        type=str,\n        default=None,\n        help=\"LLM backend for enrichment (e.g., 'ollama/phi3', 'ollama/llama3.2'). \"\n        \"If not specified, uses default backend\",\n    )\n    subparser.add_argument(\"srp_id\", nargs=\"+\")\n    subparser.set_defaults(func=metadata)\n\n    # pysradb download\n    subparser = subparsers.add_parser(\"download\", help=\"Download SRA project (SRPnnnn)\")\n    subparser.add_argument(\"--out-dir\", help=\"Output directory root\")\n    subparser.add_argument(\"--srx\", \"-x\", help=\"Download only these SRX(s)\", nargs=\"+\")\n    subparser.add_argument(\"--srp\", \"-p\", help=\"SRP ID\", nargs=\"+\")\n    subparser.add_argument(\"--geo\", \"-g\", help=\"GEO ID\", nargs=\"+\")\n    subparser.add_argument(\n        \"--skip-confirmation\", \"-y\", action=\"store_true\", help=\"Skip confirmation\"\n    )\n    subparser.add_argument(\n        \"--use_ascp\", \"-a\", action=\"store_true\", help=\"Use aspera instead of wget\"\n    )\n    subparser.add_argument(\n        \"--col\", help=\"Specify column to download\", default=\"public_url\"\n    )\n    subparser.add_argument(\n        \"--threads\", \"-t\", help=\"Number of threads\", default=1, type=int\n    )\n    subparser.set_defaults(func=download)\n\n    # pysradb search\n    subparser = subparsers.add_parser(\"search\", help=\"Search SRA/ENA for matching text\")\n    subparser.add_argument(\n        \"-o\", \"--saveto\", help=\"Save search result dataframe to file\"\n    )\n    subparser.add_argument(\n        \"-s\",\n        \"--stats\",\n        action=\"store_true\",\n        help=\"Displays some useful statistics for the search results.\",\n    )\n    subparser.add_argument(\n        \"-g\",\n        \"--graphs\",\n        nargs=\"?\",\n        const=\"all\",\n        help=(\n            \"Generates graphs to illustrate the search result. \"\n            \"By default all graphs are generated. \\n\"\n            \"Alternatively, select a subset from the options below in a space-separated string:\\n\"\n            \"daterange, organism, source, selection, platform, basecount\"\n        ),\n    )\n    subparser.add_argument(\n        \"-d\",\n        \"--db\",\n        choices=[\"ena\", \"geo\", \"sra\"],\n        default=\"sra\",\n        help=\"Select the db API (sra, ena, or geo) to query, default = sra.     \"\n        \"Note: pysradb search works slightly differently when db = geo. \\n\"\n        \"Please refer to 'pysradb search --geo-info' for more details.\",\n    )\n    subparser.add_argument(\n        \"-v\",\n        \"--verbosity\",\n        choices=[0, 1, 2, 3],\n        default=2,\n        help=(\n            \"Level of search result details (0, 1, 2 or 3), default = 2\\n\"\n            \"0: run accession only\\n\"\n            \"1: run accession and experiment title\\n\"\n            \"2: accession numbers, titles and sequencing information\\n\"\n            \"3: records in 2 and other information such as download url, sample attributes, etc\"\n        ),\n        type=int,\n    )\n    subparser.add_argument(\n        \"--run-description\",\n        action=\"store_true\",\n        help=\"Displays run accessions and descriptions only. Equivalent to --verbosity 1\",\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Displays detailed search results. Equivalent to --verbosity 3.\",\n    )\n    subparser.add_argument(\n        \"-m\",\n        \"--max\",\n        default=20,\n        help=\"Maximum number of entries to return, default = 20\",\n        type=int,\n    )\n    subparser.add_argument(\n        \"-q\",\n        \"--query\",\n        nargs=\"+\",\n        help=\"Main query string. Note that if no query is supplied, at least one of the \"\n        \"following flags must be present:\",\n    )\n    subparser.add_argument(\"-A\", \"--accession\", help=\"Accession number\")\n    subparser.add_argument(\n        \"-O\", \"--organism\", nargs=\"+\", help=\"Scientific name of the sample organism\"\n    )\n    subparser.add_argument(\n        \"-L\",\n        \"--layout\",\n        choices=[\"SINGLE\", \"PAIRED\"],\n        help=\"Library layout. Accepts either SINGLE or PAIRED\",\n        type=str.upper,\n    )\n    subparser.add_argument(\n        \"-M\",\n        \"--mbases\",\n        help=\"Size of the sample rounded to the nearest megabase\",\n        type=int,\n    )\n    subparser.add_argument(\n        \"-D\",\n        \"--publication-date\",\n        help=\"Publication date of the run in the format dd-mm-yyyy. If a date range is desired, \"\n        \"enter the start date, followed by end date, separated by a colon ':'.\\n \"\n        \"Example: 01-01-2010:31-12-2010\",\n    )\n    subparser.add_argument(\"-P\", \"--platform\", nargs=\"+\", help=\"Sequencing platform\")\n    subparser.add_argument(\"-E\", \"--selection\", nargs=\"+\", help=\"Library selection\")\n    subparser.add_argument(\"-C\", \"--source\", nargs=\"+\", help=\"Library source\")\n    subparser.add_argument(\n        \"-S\", \"--strategy\", nargs=\"+\", help=\"Library preparation strategy\"\n    )\n    subparser.add_argument(\"-T\", \"--title\", nargs=\"+\", help=\"Experiment title\")\n\n    # The following arguments are for GEO DataSets only\n    subparser.add_argument(\n        \"-I\",\n        \"--geo-info\",\n        action=\"store_true\",\n        help=\"Displays information on how to query GEO DataSets via 'pysradb search --db geo ...', \"\n        \"including accepted inputs for -G/--geo-query, -Y/--geo-dataset-type and -Z/--geo-entry-type. \",\n    )\n    subparser.add_argument(\n        \"-G\",\n        \"--geo-query\",\n        nargs=\"+\",\n        help=\"Main query string for GEO DataSet. This flag is only used when db is set to be geo.\"\n        \"Please refer to 'pysradb search --geo-info' for more details.\",\n    )\n    subparser.add_argument(\n        \"-Y\",\n        \"--geo-dataset-type\",\n        nargs=\"+\",\n        help=\"GEO DataSet Type. This flag is only used when --db is set to be geo.\"\n        \"Please refer to 'pysradb search --geo-info' for more details.\",\n    )\n    subparser.add_argument(\n        \"-Z\",\n        \"--geo-entry-type\",\n        nargs=\"+\",\n        help=\"GEO Entry Type. This flag is only used when --db is set to be geo.\"\n        \"Please refer to 'pysradb search --geo-info' for more details.\",\n    )\n\n    subparser.set_defaults(func=search)\n\n    # pysradb gse-to-gsm\n    subparser = subparsers.add_parser(\"gse-to-gsm\", help=\"Get GSM for a GSE\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [sample_accession (SRS),\n                                         run_accession (SRR),\n                                         sample_alias (GSM),\n                                         run_alias (GSM_r)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"gse_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gse_to_gsm)\n\n    # pysradb gse-to-srp\n    subparser = subparsers.add_parser(\"gse-to-srp\", help=\"Get SRP for a GSE\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                           run_accession (SRR),\n                                           sample_accession (SRS),\n                                           experiment_alias (GSM_),\n                                           run_alias (GSM_r),\n                                           sample_alias (GSM)]\n                                           \"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"gse_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gse_to_gsm)\n\n    # pysradb gsm-to-gse\n    subparser = subparsers.add_parser(\"gsm-to-gse\", help=\"Get GSE for a GSM\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [sample_accession (SRS),\n                                            run_accession (SRR),\n                                            sample_alias (GSM),\n                                            run_alias (GSM_r)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"gsm_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gsm_to_gse)\n\n    # pysradb gsm-to-srp\n    subparser = subparsers.add_parser(\"gsm-to-srp\", help=\"Get SRP for a GSM\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                            sample_accession (SRS),\n                                            run_accession (SRR),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM),\n                                            run_alias (GSM_r),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"gsm_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gsm_to_srp)\n\n    # pysradb gsm-to-srr\n    subparser = subparsers.add_parser(\"gsm-to-srr\", help=\"Get SRR for a GSM\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                            sample_accession (SRS),\n                                            study_accession (SRP),\n                                            run_alias (GSM_r),\n                                            sample_alias (GSM),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"gsm_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gsm_to_srr)\n\n    # pysradb gsm-to-srs\n    subparser = subparsers.add_parser(\"gsm-to-srs\", help=\"Get SRS for a GSM\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                            run_accession (SRR),\n                                            study_accession (SRP),\n                                            run_alias (GSM_r),\n                                            experiment_alias (GSM),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"gsm_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gsm_to_srs)\n\n    # pysradb gsm-to-srx\n    subparser = subparsers.add_parser(\"gsm-to-srx\", help=\"Get SRX for a GSM\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                            sample_accession (SRS),\n                                            run_accession (SRR),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM),\n                                            run_alias (GSM_r),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"gsm_ids\", nargs=\"+\")\n    subparser.set_defaults(func=gsm_to_srx)\n\n    # pysradb srp-to-gse\n    subparser = subparsers.add_parser(\"srp-to-gse\", help=\"Get GSE for a SRP\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Output additional columns: [sample_accession, run_accession]\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srp_id\")\n    subparser.set_defaults(func=srp_to_gse)\n\n    # pysradb srp-to-srr\n    subparser = subparsers.add_parser(\"srp-to-srr\", help=\"Get SRR for a SRP\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [experiment_accession (SRX),\n                                            sample_accession (SRS),\n                                            study_alias (GSE),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM_),\n                                            run_alias (GSM_r)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srp_id\")\n    subparser.set_defaults(func=srp_to_srr)\n\n    # pysradb srp-to-srs\n    subparser = subparsers.add_parser(\"srp-to-srs\", help=\"Get SRS for a SRP\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [run_accession (SRR),\n                                            study_accession (SRP),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM_),\n                                            run_alias (GSM_r),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srp_id\")\n    subparser.set_defaults(func=srp_to_srs)\n\n    # pysradb srp-to-srx\n    subparser = subparsers.add_parser(\"srp-to-srx\", help=\"Get SRX for a SRP\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [sample_accession (SRS),\n                                            run_accession (SRR),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM_),\n                                            run_alias (GSM_r)',\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srp_id\")\n    subparser.set_defaults(func=srp_to_srx)\n\n    # pysradb srr-to-gsm\n    subparser = subparsers.add_parser(\"srr-to-gsm\", help=\"Get GSM for a SRR\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"'Output additional columns: [experiment_accession (SRX),\n                                             study_accession (SRP),\n                                             run_alias (GSM_r),\n                                             sample_alias (GSM_),\n                                             experiment_alias (GSM),\n                                             study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srr_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srr_to_gsm)\n\n    # pysradb srr-to-srp\n    subparser = subparsers.add_parser(\"srr-to-srp\", help=\"Get SRP for a SRR\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"'Output additional columns: [experiment_accession (SRX),\n                                             sample_accession (SRS),\n                                             run_alias (GSM_r),\n                                             experiment_alias (GSM),\n                                             sample_alias (GSM_),\n                                             study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srr_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srr_to_srp)\n\n    # pysradb srr-to-srs\n    subparser = subparsers.add_parser(\"srr-to-srs\", help=\"Get SRS for a SRR\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"'Output additional columns: [experiment_accession (SRX),\n                                             study_accession (SRP),\n                                             run_alias (GSM_r),\n                                             sample_alias (GSM_),\n                                             experiment_alias (GSM),\n                                             study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srr_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srr_to_srs)\n\n    # pysradb srr-to-srx\n    subparser = subparsers.add_parser(\"srr-to-srx\", help=\"Get SRX for a SRR\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [sample_accession (SRS),\n                                            study_accession (SRP),\n                                            run_alias (GSM_r),\n                                            experiment_alias (GSM),\n                                            sample_alias (GSM_),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srr_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srr_to_srx)\n\n    # pysradb srs-to-gsm\n    subparser = subparsers.add_parser(\"srs-to-gsm\", help=\"Get GSM for a SRS\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Output additional columns: [run_accession, study_accession]\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srs_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srs_to_gsm)\n\n    # pysradb srs-to-srx\n    subparser = subparsers.add_parser(\"srs-to-srx\", help=\"Get SRX for a SRS\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Output additional columns: [run_accession, study_accession]\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srs_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srs_to_srx)\n\n    # pysradb srx-to-srp\n    subparser = subparsers.add_parser(\"srx-to-srp\", help=\"Get SRP for a SRX\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"\"\"Output additional columns: [run_accession (SRR),\n                                            sample_accession (SRS),\n                                            experiment_alias (GSM),\n                                            run_alias (GSM_r),\n                                            sample_alias (GSM),\n                                            study_alias (GSE)]\"\"\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srx_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srx_to_srp)\n\n    # pysradb srx-to-srr\n    subparser = subparsers.add_parser(\"srx-to-srr\", help=\"Get SRR for a SRX\")\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Output additional columns: [sample_accession, study_accession]\",\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srx_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srx_to_srr)\n\n    # pysradb srx-to-srs\n    subparser = subparsers.add_parser(\"srx-to-srs\", help=\"Get SRS for a SRX\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\n        \"--detailed\",\n        action=\"store_true\",\n        help=\"Output additional columns: [run_accession, study_accession]\",\n    )\n    subparser.add_argument(\n        \"--desc\", action=\"store_true\", help=\"Should sample_attribute be included\"\n    )\n    subparser.add_argument(\n        \"--expand\", action=\"store_true\", help=\"Should sample_attribute be expanded\"\n    )\n    subparser.add_argument(\"srx_ids\", nargs=\"+\")\n    subparser.set_defaults(func=srx_to_srs)\n\n    # pysradb geo-matrix\n    subparser = subparsers.add_parser(\n        \"geo-matrix\", help=\"Download and parse GEO Matrix files\"\n    )\n    subparser.add_argument(\n        \"--accession\", required=True, help=\"GEO accession (e.g., GSE234190)\"\n    )\n    subparser.add_argument(\n        \"--to-tsv\", action=\"store_true\", help=\"Convert the matrix file to TSV format\"\n    )\n    subparser.add_argument(\n        \"--output-dir\",\n        default=\".\",\n        help=\"Output directory (default: current directory)\",\n    )\n    subparser.set_defaults(func=geo_matrix)\n\n    # pysradb srp-to-pmid\n    subparser = subparsers.add_parser(\n        \"srp-to-pmid\", help=\"Get PMIDs for SRP accessions\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"srp_ids\", nargs=\"+\", help=\"SRP accession(s)\")\n    subparser.set_defaults(func=srp_to_pmid)\n\n    # pysradb gse-to-pmid\n    subparser = subparsers.add_parser(\n        \"gse-to-pmid\", help=\"Get PMIDs for GSE accessions\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"gse_ids\", nargs=\"+\", help=\"GSE accession(s)\")\n    subparser.set_defaults(func=gse_to_pmid)\n\n    # pysradb pmid-to-gse\n    subparser = subparsers.add_parser(\n        \"pmid-to-gse\", help=\"Get GSE accessions from PMIDs\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"pmid_ids\", nargs=\"+\", help=\"PMID(s)\")\n    subparser.set_defaults(func=pmid_to_gse)\n\n    # pysradb pmid-to-srp\n    subparser = subparsers.add_parser(\n        \"pmid-to-srp\", help=\"Get SRP accessions from PMIDs\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"pmid_ids\", nargs=\"+\", help=\"PMID(s)\")\n    subparser.set_defaults(func=pmid_to_srp)\n\n    # pysradb pmc-to-identifiers\n    subparser = subparsers.add_parser(\n        \"pmc-to-identifiers\", help=\"Extract database identifiers from PMC articles\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"pmc_ids\", nargs=\"+\", help=\"PMC ID(s)\")\n    subparser.set_defaults(func=pmc_to_identifiers)\n\n    # pysradb pmid-to-identifiers\n    subparser = subparsers.add_parser(\n        \"pmid-to-identifiers\", help=\"Extract database identifiers from PubMed articles\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"pmid_ids\", nargs=\"+\", help=\"PMID(s)\")\n    subparser.set_defaults(func=pmid_to_identifiers)\n\n    # pysradb doi-to-gse\n    subparser = subparsers.add_parser(\"doi-to-gse\", help=\"Get GSE accessions from DOIs\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"doi_ids\", nargs=\"+\", help=\"DOI(s)\")\n    subparser.set_defaults(func=doi_to_gse)\n\n    # pysradb doi-to-srp\n    subparser = subparsers.add_parser(\"doi-to-srp\", help=\"Get SRP accessions from DOIs\")\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"doi_ids\", nargs=\"+\", help=\"DOI(s)\")\n    subparser.set_defaults(func=doi_to_srp)\n\n    # pysradb doi-to-identifiers\n    subparser = subparsers.add_parser(\n        \"doi-to-identifiers\", help=\"Extract database identifiers from articles via DOI\"\n    )\n    subparser.add_argument(\"--saveto\", help=\"Save output to file\")\n    subparser.add_argument(\"doi_ids\", nargs=\"+\", help=\"DOI(s)\")\n    subparser.set_defaults(func=doi_to_identifiers)\n\n    args = parser.parse_args(args=None if sys.argv[1:] else [\"--help\"])\n    if args.command == \"metadata\":\n        metadata(\n            args.srp_id,\n            args.assay,\n            args.desc,\n            args.detailed,\n            args.expand,\n            args.saveto,\n            args.enrich,\n            args.enrich_backend,\n        )\n    elif args.command == \"download\":\n        download(\n            args.out_dir,\n            args.srx,\n            args.srp,\n            args.geo,\n            args.skip_confirmation,\n            args.col,\n            args.use_ascp,\n            args.threads,\n        )\n    elif args.command == \"search\":\n        flags = vars(args)\n        if flags.pop(\"geo_info\"):\n            get_geo_search_info()\n        else:\n            search(\n                flags.pop(\"saveto\"),\n                flags.pop(\"db\"),\n                flags.pop(\"verbosity\"),\n                flags.pop(\"max\"),\n                flags,\n            )\n    elif args.command == \"gse-to-gsm\":\n        gse_to_gsm(args.gse_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gse-to-srp\":\n        gse_to_srp(args.gse_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gsm-to-gse\":\n        gsm_to_gse(args.gsm_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gsm-to-srp\":\n        gsm_to_srp(args.gsm_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gsm-to-srr\":\n        gsm_to_srr(args.gsm_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gsm-to-srs\":\n        gsm_to_srs(args.gsm_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"gsm-to-srx\":\n        gsm_to_srx(args.gsm_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srp-to-gse\":\n        srp_to_gse(args.srp_id, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srp-to-srr\":\n        srp_to_srr(args.srp_id, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srp-to-srs\":\n        srp_to_srs(args.srp_id, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srp-to-srx\":\n        srp_to_srx(args.srp_id, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srr-to-gsm\":\n        srr_to_gsm(args.srr_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srr-to-srp\":\n        srr_to_srp(args.srr_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srr-to-srs\":\n        srr_to_srs(args.srr_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srr-to-srx\":\n        srr_to_srx(args.srr_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srs-to-gsm\":\n        srs_to_gsm(args.srs_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srs-to-srx\":\n        srs_to_srx(args.srs_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srx-to-srp\":\n        srx_to_srp(args.srx_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srx-to-srr\":\n        srx_to_srr(args.srx_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"srx-to-srs\":\n        srx_to_srs(args.srx_ids, args.saveto, args.detailed, args.desc, args.expand)\n    elif args.command == \"geo-matrix\":\n        geo_matrix(args.accession, args.to_tsv, args.output_dir)\n    elif args.command == \"srp-to-pmid\":\n        srp_to_pmid(args.srp_ids, args.saveto)\n    elif args.command == \"gse-to-pmid\":\n        gse_to_pmid(args.gse_ids, args.saveto)\n    elif args.command == \"pmid-to-gse\":\n        pmid_to_gse(args.pmid_ids, args.saveto)\n    elif args.command == \"pmid-to-srp\":\n        pmid_to_srp(args.pmid_ids, args.saveto)\n    elif args.command == \"pmc-to-identifiers\":\n        pmc_to_identifiers(args.pmc_ids, args.saveto)\n    elif args.command == \"pmid-to-identifiers\":\n        pmid_to_identifiers(args.pmid_ids, args.saveto)\n    elif args.command == \"doi-to-gse\":\n        doi_to_gse(args.doi_ids, args.saveto)\n    elif args.command == \"doi-to-srp\":\n        doi_to_srp(args.doi_ids, args.saveto)\n    elif args.command == \"doi-to-identifiers\":\n        doi_to_identifiers(args.doi_ids, args.saveto)\n\n\nif __name__ == \"__main__\":\n    parse_args(sys.argv[1:])\n"
  },
  {
    "path": "pysradb/download.py",
    "content": "\"\"\"Utility function to download data\"\"\"\n\nimport hashlib\nimport math\nimport os\nimport shutil\nimport sys\nimport warnings\nfrom ftplib import FTP\nfrom urllib.parse import urlparse\n\nimport numpy as np\nimport requests\nfrom tqdm.autonotebook import tqdm\n\nfrom .utils import requests_3_retries\n\nwarnings.simplefilter(action=\"ignore\", category=FutureWarning)\nimport pandas as pd\n\ntqdm.pandas()\n\n\ndef _get_ftp_file_size(url):\n    \"\"\"Get file size from FTP server.\n\n    Parameters\n    ----------\n    url : str\n        FTP URL\n\n    Returns\n    -------\n    size : int\n        File size in bytes, or 0 if unable to determine\n    \"\"\"\n    try:\n        parsed = urlparse(url)\n        ftp = FTP(parsed.netloc)\n        ftp.login()\n        size = ftp.size(parsed.path)\n        ftp.quit()\n        return size if size is not None else 0\n    except Exception:\n        return 0\n\n\ndef _download_ftp_file(\n    url, file_path, timeout=10, block_size=1024 * 1024, show_progress=False\n):\n    \"\"\"Download file from FTP server.\n\n    Parameters\n    ----------\n    url : str\n        FTP URL\n    file_path : str\n        Local file path to store the downloaded file\n    timeout : int\n        Timeout in seconds\n    block_size : int\n        Block size for downloading\n    show_progress : bool\n        Show progress bar\n    \"\"\"\n    parsed = urlparse(url)\n    tmp_file_path = file_path + \".part\"\n\n    # Check if partial file exists\n    first_byte = os.path.getsize(tmp_file_path) if os.path.exists(tmp_file_path) else 0\n    file_mode = \"ab\" if first_byte else \"wb\"\n\n    try:\n        ftp = FTP(parsed.netloc, timeout=timeout)\n        ftp.login()\n\n        file_size = ftp.size(parsed.path)\n        if file_size is None:\n            file_size = -1\n\n        if show_progress and file_size > 0:\n            desc = \"Downloading {}\".format(url.split(\"/\")[-1])\n            pbar = tqdm(\n                total=file_size,\n                initial=first_byte,\n                unit=\"B\",\n                unit_scale=True,\n                desc=desc,\n            )\n\n        with open(tmp_file_path, file_mode) as f:\n            if first_byte > 0:\n                ftp.voidcmd(f\"REST {first_byte}\")\n\n            def callback(data):\n                f.write(data)\n                if show_progress and file_size > 0:\n                    pbar.update(len(data))\n\n            ftp.retrbinary(f\"RETR {parsed.path}\", callback, blocksize=block_size)\n\n        if show_progress and file_size > 0:\n            pbar.close()\n\n        ftp.quit()\n\n        if file_size == -1 or file_size == os.path.getsize(tmp_file_path):\n            shutil.move(tmp_file_path, file_path)\n        else:\n            raise Exception(\n                f\"Download incomplete: expected {file_size} bytes, got {os.path.getsize(tmp_file_path)} bytes\"\n            )\n\n    except Exception as e:\n        if show_progress and \"pbar\" in locals():\n            pbar.close()\n        raise Exception(f\"FTP download failed: {e}\")\n\n\ndef millify(n):\n    \"\"\"Convert integer to human readable format.\n\n    Parameters\n    ----------\n    n : int\n\n    Returns\n    -------\n    millidx : str\n              Formatted integer\n    \"\"\"\n    millnames = [\"\", \" KB\", \" MB\", \" GB\", \" TB\"]\n    # Source: http://stackoverflow.com/a/3155023/756986\n    n = float(n)\n    millidx = max(\n        0,\n        min(\n            len(millnames) - 1, int(math.floor(0 if n == 0 else math.log10(abs(n)) / 3))\n        ),\n    )\n\n    return \"{:.1f}{}\".format(n / 10 ** (3 * millidx), millnames[millidx])\n\n\ndef get_file_size(row, url_col):\n    \"\"\"Get size of file to be downloaded.\n\n    Parameters\n    ----------\n    row: pd.DataFrame row\n\n    url_col: str\n        url_column\n\n    Returns\n    -------\n    content_length: int\n    \"\"\"\n    if row[url_col] is not None:\n        url = row[url_col]\n    else:\n        url = row.download_url\n    if url is pd.NA:\n        return 0\n    if not isinstance(url, str):\n        return 0\n    if url.startswith(\"ftp.\"):\n        url = \"ftp://\" + url\n\n    if url.startswith(\"ftp://\"):\n        return _get_ftp_file_size(url)\n\n    try:\n        r = requests_3_retries().head(url)\n        size = int(r.headers[\"content-length\"])\n        r.raise_for_status()\n    except requests.exceptions.Timeout:\n        sys.exit(f\"Connection to {url} has timed out. Please retry.\")\n    except requests.exceptions.HTTPError:\n        print(\n            f\"The download URL:  {url}  is likely invalid.\\n\"\n            f\"Removing {row.run_accession} from the download list\\n\",\n            flush=True,\n        )\n        return np.NaN\n    except KeyError:\n        print(\"Key error for: \" + url, flush=True)\n        return 0\n    return size\n\n\ndef md5_validate_file(file_path, md5_hash):\n    \"\"\"Check file containt against an MD5.\n\n    Parameters\n    ----------\n    file_path: string\n               Path to file\n    md5_hash: string\n             Expected md5 hash\n\n    Returns\n    -------\n    valid: bool\n           True if expected and observed md5 match\n    \"\"\"\n    observed_md5 = hashlib.md5()\n    with open(file_path, \"rb\") as f:\n        while True:\n            # read 1MB\n            chunk = f.read(1000 * 1000)\n            if not chunk:\n                break\n            observed_md5.update(chunk)\n    return observed_md5.hexdigest() == md5_hash\n\n\ndef download_file(\n    url,\n    file_path,\n    md5_hash=None,\n    timeout=10,\n    block_size=1024 * 1024,\n    show_progress=False,\n):\n    \"\"\"Resumable download.\n    Expect the server to support byte ranges.\n\n    Parameters\n    ----------\n    url: string\n         URL\n    file_path: string\n               Local file path to store the downloaded file\n    md5_hash: string\n              Expected MD5 string of downloaded file\n    timeout: int\n             Seconds to wait before terminating request\n    block_size: int\n                Chunkx of bytes to read (default: 1024 * 1024 = 1MB)\n    show_progress: bool\n                   Show progress bar\n    \"\"\"\n    if url.startswith(\"ftp.\"):\n        url = \"ftp://\" + url\n\n    if os.path.exists(file_path) and os.path.getsize(file_path):\n        return\n\n    if url.startswith(\"ftp://\"):\n        _download_ftp_file(url, file_path, timeout, block_size, show_progress)\n        # if there's a hash value, validate the file\n        if md5_hash and not md5_validate_file(file_path, md5_hash):\n            raise Exception(\"Error validating the file against its MD5 hash\")\n        return\n\n    session = requests\n    tmp_file_path = file_path + \".part\"\n    first_byte = os.path.getsize(tmp_file_path) if os.path.exists(tmp_file_path) else 0\n    file_mode = \"ab\" if first_byte else \"wb\"\n    file_size = -1\n    try:\n        file_size = int(session.head(url).headers[\"Content-length\"])\n        headers = {\"Range\": \"bytes=%s-\" % first_byte}\n        r = session.get(url, headers=headers, stream=True)\n        if show_progress:\n            desc = \"Downloading {}\".format(url.split(\"/\")[-1])\n            pbar = tqdm(\n                total=file_size,\n                initial=first_byte,\n                unit=\"B\",\n                unit_scale=True,\n                desc=desc,\n            )\n        with open(tmp_file_path, file_mode) as f:\n            for chunk in r.iter_content(chunk_size=block_size):\n                if chunk:  # filter out keep-alive new chunks\n                    f.write(chunk)\n                    if show_progress:\n                        pbar.update(len(chunk))\n        if show_progress:\n            pbar.close()\n    except IOError as e:\n        sys.stderr.write(\"IO Error - {}\\n\".format(e))\n    finally:\n        # Move the temp file to desired location\n        if os.path.exists(tmp_file_path):\n            actual_size = os.path.getsize(tmp_file_path)\n            if file_size == actual_size:\n                if md5_hash and not md5_validate_file(tmp_file_path, md5_hash):\n                    raise Exception(\"Error validating the file against its MD5 hash\")\n                shutil.move(tmp_file_path, file_path)\n            elif file_size == -1:\n                # Server didn't provide Content-Length, move the file anyway\n                shutil.move(tmp_file_path, file_path)\n            else:\n                print(\n                    f\"Warning: File size mismatch for {url}. Expected: {file_size}, Got: {actual_size}\"\n                )\n                if actual_size > 0:\n                    shutil.move(tmp_file_path, file_path)\n"
  },
  {
    "path": "pysradb/exceptions.py",
    "content": "\"\"\"This file contains custom Exceptions for pysradb\"\"\"\n\n\nclass MissingQueryException(Exception):\n    \"\"\"Exception raised when the user did not supply any query fields.\n\n    Attributes:\n        message: string\n            Error message for this Exception\n\n    \"\"\"\n\n    def __init__(self):\n        self.message = (\n            \"No valid query has been supplied. \\n\"\n            \"A query must be supplied to one of the following fields:\\n\"\n            \"[--query, --accession, --organism, --layout, --mbases, --publication-date,\"\n            \" --platform, --selection, --source, --strategy, --title]\"\n        )\n        super().__init__(self.message)\n\n\nclass IncorrectFieldException(Exception):\n    \"\"\"Exception raised when the user enters incorrect inputs for a flag.\"\"\"\n\n    pass\n"
  },
  {
    "path": "pysradb/filter_attrs.py",
    "content": "import re\nimport warnings\n\nimport numpy as np\nimport pandas as pd\n\n\ndef _get_sample_attr_keys(sample_attribute):\n    if sample_attribute is None:\n        return None, None\n    sample_attribute_splitted = sample_attribute.split(\"||\")\n    split_by_colon = [\n        str(attr).strip().split(\": \") for attr in sample_attribute_splitted\n    ]\n\n    # Iterate once more to consider first one as the key\n    # and remaining as the value\n    # This is because of bad annotations like in this example\n    # Example: isolate: not applicable || organism: Mus musculus || cell_line: 17-Cl1 ||\\\n    # infect: MHV-A59 || time point: 5: hour || compound: cycloheximide ||\\\n    # sequencing protocol: RiboSeq || biological repeat: long read sequencing\n    # Notice the `time: 5: hour`\n    # sample_attribute: investigation type: metagenome || project name: Landsort Depth 20090415 transect ||\n    # sequencing method: 454 || collection date: 2009-04-15 || ammonium: 8.7: µM || chlorophyll: 0: µg/L ||\n    # dissolved oxygen: -1.33: µmol/kg || nitrate: 0.02: µM || nitrogen: 0: µM ||\n    # environmental package: water || geographic location (latitude): 58.6: DD ||\n    # geographic location (longitude): 18.2: DD || geographic location (country and/or sea,region): Baltic Sea ||\n    # environment (biome): 00002150 || environment (feature): 00002150 || environment (material): 00002150 ||\n    # depth: 400: m || Phosphate:  || Total phosphorous:  || Silicon:\n    # Handle empty cases as above\n    split_by_colon = [attr for attr in split_by_colon if len(attr) >= 2]\n\n    for index, element in enumerate(split_by_colon):\n        if len(element) > 2:\n            key = element[0].strip()\n            value = \":\".join(element[1:]).strip()\n            split_by_colon[index] = [key, value]\n\n    try:\n        sample_attribute_dict = dict(split_by_colon)\n    except ValueError:\n        print(\"This is most likely a bug, please report it upstream.\")\n        print((\"sample_attribute: {}\".format(sample_attribute)))\n        raise\n    sample_attribute_keys = list(\n        map(\n            lambda x: re.sub(r\"\\s+\", \" \", x.strip().replace(\" \", \"_\").lower()),\n            list(sample_attribute_dict.keys()),\n        )\n    )\n    sample_attribute_values = list(\n        map(\n            lambda x: re.sub(r\"\\s+\", \" \", x.strip().lower().strip().replace(\",\", \"__\")),\n            list(sample_attribute_dict.values()),\n        )\n    )\n    return sample_attribute_keys, sample_attribute_values\n\n\ndef expand_sample_attribute_columns(metadata_df):\n    \"\"\"Expand sample attribute columns to individual columns.\n\n    Since the sample_attribute column content can be different\n    for differnt rows even if coming from the same project (SRP),\n    we explicitly iterate through the rows to first determine\n    what additional columns need to be created.\n\n\n    Parameters\n    ----------\n    metadata_df: DataFrame\n                 Dataframe as obtained from sra_metadata\n                 or equivalent\n\n    Returns\n    -------\n    expanded_df: DataFrame\n                 Dataframe with additionals columns pertaining\n                 to sample_attribute appended\n    \"\"\"\n    additional_columns = []\n    metadata_df = metadata_df.copy()\n    for idx, row in metadata_df.iterrows():\n        sample_attribute = row[\"sample_attribute\"]\n        if not sample_attribute:\n            continue\n        sample_attribute = sample_attribute.strip()\n        sample_attribute_keys, _ = _get_sample_attr_keys(sample_attribute)\n        if sample_attribute_keys:\n            additional_columns += sample_attribute_keys\n    additional_columns = list(sorted(set(additional_columns)))\n    # if any of the additional column already exists\n    # call the additional column  as *_expanded\n    additional_columns = list(\n        map(\n            lambda x: x if x not in metadata_df.columns.tolist() else x + \"_expanded\",\n            additional_columns,\n        )\n    )\n    additional_columns = list(sorted(additional_columns))\n    empty_df = pd.DataFrame(columns=additional_columns)\n    metadata_df_expanded = pd.concat([metadata_df, empty_df], axis=1)\n    for idx, row in metadata_df_expanded.iterrows():\n        sample_attribute = row[\"sample_attribute\"]\n        sample_attribute_keys, sample_attribute_values = _get_sample_attr_keys(\n            sample_attribute\n        )\n        if sample_attribute_keys:\n            sample_attribute_keys = list(\n                map(\n                    lambda x: (\n                        x if x not in metadata_df.columns.tolist() else x + \"_expanded\"\n                    ),\n                    sample_attribute_keys,\n                )\n            )\n        metadata_df_expanded.loc[idx, sample_attribute_keys] = sample_attribute_values\n    if np.nan in metadata_df_expanded.columns.tolist():\n        del metadata_df_expanded[np.nan]\n    return metadata_df_expanded\n\n\ndef guess_cell_type(sample_attribute):\n    \"\"\"Guess possible cell line from sample_attribute data.\n\n    Parameters\n    ----------\n    sample_attribute: string\n                      sample_attribute string as in the metadata column\n\n    Returns\n    -------\n    cell_type: string\n               Possible cell type of sample.\n               Returns None if no match found.\n    \"\"\"\n    sample_attribute = str(sample_attribute)\n    cell_type = None\n    if \"cell line:\" in sample_attribute:\n        x = re.search(r\"cell line: \\w+\", sample_attribute)\n        cell_type = re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"cell line:\").lower().strip())\n    if \"cell_line:\" in sample_attribute:\n        x = re.search(r\"cell_line: \\w+\", sample_attribute)\n        cell_type = re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"cell_line:\").lower().strip())\n    if \"cell-line:\" in sample_attribute:\n        x = re.search(r\"cell-line: \\w+\", sample_attribute)\n        cell_type = re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"cell-line:\").lower().strip())\n    if \"cell_type:\" in sample_attribute:\n        x = re.search(r\"cell_type: \\w+\", sample_attribute)\n        return re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"cell_type:\").lower().strip())\n    if \"source_name:\" in sample_attribute:\n        x = re.search(r\"source_name: \\w+\", sample_attribute)\n        cell_type = re.sub(\n            r\"\\s+\", \" \", x.group(0).lstrip(\"source_name:\").lower().strip()\n        )\n    else:\n        warnings.warn(\n            \"Couldn't parse {} for cell line\".format(sample_attribute), UserWarning\n        )\n    return cell_type\n\n\ndef guess_tissue_type(sample_attribute):\n    \"\"\"Guess tissue type from sample_attribute data.\n\n    Parameters\n    ----------\n    sample_attribute: string\n                      sample_attribute string as in the metadata column\n\n    Returns\n    -------\n    tissue_type: string\n               Possible cell type of sample.\n               Returns None if no match found.\n    \"\"\"\n    sample_attribute = str(sample_attribute)\n    tissue_type = None\n    if \"tissue: \" in sample_attribute:\n        x = re.search(r\"tissue: \\w+\", sample_attribute)\n        tissue_type = re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"tissue:\").lower().strip())\n    else:\n        warnings.warn(\n            \"Couldn't parse {} for tissue\".format(sample_attribute), UserWarning\n        )\n    return tissue_type\n\n\ndef guess_strain_type(sample_attribute):\n    \"\"\"Guess strain type from sample_attribute data.\n\n    Parameters\n    ----------\n    sample_attribute: string\n                      sample_attribute string as in the metadata column\n\n    Returns\n    -------\n    strain_type: string\n                 Possible cell type of sample.\n                 Returns None if no match found.\n    \"\"\"\n    sample_attribute = str(sample_attribute)\n    strain_type = None\n    if \"strain: \" in sample_attribute:\n        x = re.search(r\"strain: \\w+\", sample_attribute)\n        strain_type = re.sub(r\"\\s+\", \" \", x.group(0).lstrip(\"strain:\").lower().strip())\n    else:\n        warnings.warn(\n            \"Couldn't parse {} for strain\".format(sample_attribute), UserWarning\n        )\n    return strain_type\n"
  },
  {
    "path": "pysradb/geoweb.py",
    "content": "\"\"\"Utilities to interact with GEO online\"\"\"\n\nimport gzip\nimport os\nimport re\nimport sys\nfrom io import StringIO\n\nimport pandas as pd\nimport requests\nfrom lxml import html\n\nfrom .download import download_file\nfrom .utils import _get_url, copyfileobj, get_gzip_uncompressed_size\n\nPY3 = True\nif sys.version_info[0] < 3:\n    PY3 = False\n\n\nclass GEOweb(object):\n    def __init__(self):\n        \"\"\"Initialize GEOweb without any database.\"\"\"\n\n    def get_download_links(self, gse):\n        \"\"\"Obtain all links from the GEO FTP page.\n\n        Parameters\n        ----------\n        gse: string\n             GSE ID\n\n        Returns\n        -------\n        links: list\n               List of all valid downloadable links present for a GEO ID\n        \"\"\"\n        prefix = gse[:-3]\n        url = f\"https://ftp.ncbi.nlm.nih.gov/geo/series/{prefix}nnn/{gse}/suppl/\"\n        link_objects = html.fromstring(requests.get(url).content).xpath(\"//a\")\n        links = [i.attrib[\"href\"] for i in link_objects]\n        # remove vulnerability link\n        links = [\n            link\n            for link in links\n            if link != \"https://www.hhs.gov/vulnerability-disclosure-policy/index.html\"\n        ]\n        # Check if returned results are a valid page - a link to the\n        # home page only exists where the GSE ID dow not exist\n        if \"/\" in links:\n            raise KeyError(f\"The provided GEO ID {gse} does not exist.\")\n\n        # The list of links for a valid GSE ID also contains a link to\n        # the parent directory - we do not want that\n        links = [i for i in links if \"geo/series/\" not in i]\n\n        # The links are relative, we need absolute links to download\n        links = [i for i in links]\n\n        return links, url\n\n    def download(self, links, root_url, gse, verbose=False, out_dir=None):\n        \"\"\"Download GEO files.\n\n        Parameters\n        ----------\n        links: list\n               List of all links valid downloadable present for a GEO ID\n        root_url: string\n                  url for root directory for a GEO ID\n        gse: string\n             GEO ID\n        verbose: bool\n                 Print file list\n        out_dir: string\n                 Directory location for download\n        \"\"\"\n        if out_dir is None:\n            out_dir = os.path.join(os.getcwd(), \"pysradb_downloads\")\n\n        # store output in a separate directory\n        out_dir = os.path.join(out_dir, gse)\n        os.makedirs(out_dir, exist_ok=True)\n\n        # Display files to be downloaded\n        print(\"\\nThe following files will be downloaded: \\n\")\n        for link in links:\n            print(link)\n        print(os.linesep)\n        # Check if we can access list of files in the tar file\n        tar_list = [i for i in links if \".tar\" in i]\n        if \"filelist.txt\" in links:\n            tar_file = tar_list[0]\n            if verbose:\n                print(f\"\\nThe tar file {tar_file} contains the following files:\\n\")\n                file_list_contents = requests.get(\n                    root_url + \"filelist.txt\"\n                ).content.decode(\"utf-8\")\n                print(file_list_contents)\n\n        # Download files\n        for link in links:\n            # add a prefix to distinguish filelist.txt from different downloads\n            prefix = \"\"\n            if link == \"filelist.txt\":\n                prefix = gse + \"_\"\n            geo_path = os.path.join(out_dir, prefix + link)\n            download_file(root_url + link, geo_path, show_progress=True)\n\n\ndef download_geo_matrix(accession, output_dir=\".\"):\n    \"\"\"\n    Download a GEO Matrix file for a given GEO accession ID.\n\n    Args:\n        accession (str): GEO accession ID (e.g., 'GSE234190').\n        output_dir (str): Directory to save the downloaded file (default: current directory).\n\n    Returns:\n        str: Path to the downloaded file.\n\n    Raises:\n        Exception: If the download fails.\n    \"\"\"\n    # Construct the URL for the GEO Matrix file\n    url = f\"https://ftp.ncbi.nlm.nih.gov/geo/series/{accession[:-3]}nnn/{accession}/matrix/{accession}_series_matrix.txt.gz\"\n\n    # Define the output file path\n    output_file = os.path.join(output_dir, f\"{accession}_series_matrix.txt.gz\")\n\n    # Download the file using _get_url\n    try:\n        _get_url(url, output_file)\n        return output_file\n    except Exception as e:\n        raise Exception(\n            f\"Failed to download GEO Matrix file for {accession}. Exception: {str(e)}\"\n        )\n\n\ndef parse_geo_matrix_to_tsv(input_file, output_file):\n    \"\"\"\n    Parse a GEO Matrix file to a TSV file, extracting the expression data.\n\n    Args:\n        input_file (str): Path to the input GEO Matrix file (gzipped).\n        output_file (str): Path to save the output TSV file.\n\n    Returns:\n        pandas.DataFrame: The parsed expression data.\n    \"\"\"\n    # Read the gzipped file and extract the data section\n    data_lines = []\n    data_section = False\n\n    with gzip.open(input_file, \"rt\", encoding=\"utf-8\") as f:\n        for line in f:\n            line = line.strip()\n            if line == \"!series_matrix_table_begin\":\n                data_section = True\n                continue\n            elif line == \"!series_matrix_table_end\":\n                break\n            if data_section and line:\n                data_lines.append(line)\n\n    # Use pandas.read_csv to parse the data section\n    df = pd.read_csv(StringIO(\"\\n\".join(data_lines)), sep=\"\\t\", comment=\"!\")\n\n    # Save to TSV\n    df.to_csv(output_file, sep=\"\\t\", index=False)\n\n    return df\n"
  },
  {
    "path": "pysradb/metadata_enrichment.py",
    "content": "\"\"\"\nMetadata enrichment for SRA/GEO datasets using LLMs and embeddings.\n\"\"\"\n\nimport logging\nimport os\nimport subprocess\nimport sys\nfrom abc import ABC, abstractmethod\nfrom typing import Any, Dict, List, Optional, Union\n\nimport pandas as pd\nfrom pydantic import BaseModel, Field\nfrom tqdm.autonotebook import tqdm\n\nlogger = logging.getLogger(__name__)\n\n\ndef _prompt_install_enrichment_dependencies() -> bool:\n    \"\"\"\n    Prompt user to install enrichment dependencies.\n\n    Returns:\n        True if installation succeeded, False otherwise.\n    \"\"\"\n    try:\n        response = (\n            input(\n                \"Enrichment requires 'instructor' and 'pydantic'. Install now? (yes/no): \"\n            )\n            .strip()\n            .lower()\n        )\n    except (EOFError, KeyboardInterrupt):\n        return False\n\n    if response not in [\"yes\", \"y\"]:\n        print(\"Install with: pip install 'pysradb[enrichment]'\")\n        return False\n\n    try:\n        subprocess.check_call(\n            [\n                sys.executable,\n                \"-m\",\n                \"pip\",\n                \"install\",\n                \"instructor>=1.0.0\",\n                \"pydantic>=2.0.0\",\n            ]\n        )\n        return True\n    except subprocess.CalledProcessError:\n        print(\n            \"Installation failed. Install manually with: pip install 'pysradb[enrichment]'\"\n        )\n        return False\n\n\nclass MetadataExtractor(ABC):\n    \"\"\"Base class for metadata extraction from experiment descriptions.\"\"\"\n\n    def __init__(self):\n        self.logger = logging.getLogger(self.__class__.__name__)\n\n    @abstractmethod\n    def extract_metadata(\n        self, text: str, fields: Optional[List[str]] = None\n    ) -> Dict[str, Any]:\n        \"\"\"\n        Extract metadata from text.\n\n        Args:\n            text: Input text (experiment description, title, etc.)\n            fields: List of metadata fields to extract. If None, extract all.\n\n        Returns:\n            Dictionary with extracted metadata\n        \"\"\"\n        pass\n\n    def extract_batch(\n        self, texts: List[str], fields: Optional[List[str]] = None\n    ) -> List[Dict[str, Any]]:\n        \"\"\"\n        Extract metadata from multiple texts.\n\n        Args:\n            texts: List of input texts\n            fields: List of metadata fields to extract\n\n        Returns:\n            List of dictionaries with extracted metadata\n        \"\"\"\n        return [self.extract_metadata(text, fields) for text in texts]\n\n    def _find_column_variant(self, df: pd.DataFrame, target_col: str) -> Optional[str]:\n        \"\"\"\n        Find a column that matches the target column name with flexible matching.\n\n        Handles variations like:\n        - Different casing: cell_type, Cell_Type, CELL_TYPE\n        - Spaces vs underscores: cell_type, cell type, celltype\n        - CamelCase: cellType, CellType\n\n        Args:\n            df: DataFrame to search\n            target_col: Target column name (e.g., 'cell_type')\n\n        Returns:\n            Actual column name if found, None otherwise\n        \"\"\"\n        target_normalized = target_col.lower().replace(\"_\", \"\").replace(\" \", \"\")\n\n        for col in df.columns:\n            col_normalized = str(col).lower().replace(\"_\", \"\").replace(\" \", \"\")\n            if col_normalized == target_normalized:\n                return col\n        return None\n\n    def enrich_dataframe(\n        self,\n        df: pd.DataFrame,\n        text_column: Optional[str] = None,\n        fields: Optional[List[str]] = None,\n        prefix: str = \"guessed_\",\n        show_progress: bool = True,\n    ) -> pd.DataFrame:\n        \"\"\"\n        Enrich a DataFrame with extracted metadata.\n\n        Args:\n            df: Input DataFrame\n            text_column: Column containing text to analyze. If None, combines sample text columns.\n            fields: List of metadata fields to extract\n            prefix: Prefix for new columns\n            show_progress: Show progress bar (default: True)\n\n        Returns:\n            DataFrame with additional metadata columns\n        \"\"\"\n        # If text_column not specified, combine all relevant columns\n        if text_column is None:\n            preferred_columns = [\n                \"sample_title\",\n                \"experiment_title\",\n                \"sample_source_name\",\n                \"source_name\",\n                \"sample_type\",\n                \"sex\",\n                \"age\",\n                \"tissue\",\n                \"cell_type\",\n                \"disease\",\n                \"disease_status\",\n                \"treatment\",\n                \"compound\",\n                \"extract_protocol\",\n                \"label_protocol\",\n                \"sample_summary\",\n                \"description\",\n            ]\n\n            exclude_columns = [\n                \"study_title\",\n                \"study_summary\",\n                \"series_title\",\n                \"series_summary\",\n            ]\n\n            available_cols = []\n            for col in preferred_columns:\n                actual_col = self._find_column_variant(df, col)\n                if actual_col and actual_col not in exclude_columns:\n                    available_cols.append(actual_col)\n\n            if not available_cols:\n                raise ValueError(\n                    \"No suitable text columns found in DataFrame. \"\n                    \"Please specify text_column parameter or ensure DataFrame \"\n                    \"contains columns like 'sample_title', 'experiment_title', etc.\"\n                )\n\n            texts = []\n            for idx, row in df.iterrows():\n                parts = []\n                for col in available_cols:\n                    if pd.notna(row[col]):\n                        parts.append(f\"{col}: {row[col]}\")\n                texts.append(\". \".join(parts))\n        else:\n            if text_column not in df.columns:\n                raise ValueError(f\"Column '{text_column}' not found in DataFrame\")\n            texts = df[text_column].fillna(\"\").tolist()\n\n        if show_progress:\n            metadata_list = [\n                self.extract_metadata(text, fields)\n                for text in tqdm(texts, desc=\"Enriching metadata\", unit=\"row\")\n            ]\n        else:\n            metadata_list = self.extract_batch(texts, fields)\n\n        df_enriched = df.copy()\n        for field in metadata_list[0].keys():\n            df_enriched[f\"{prefix}{field}\"] = [m.get(field) for m in metadata_list]\n\n        return df_enriched\n\n\nclass _MetadataExtraction(BaseModel):\n    \"\"\"Model for metadata extraction aligned with CellxGene schema.\n\n    Fields are designed to match CellxGene Discover metadata structure and use\n    ontology-based terms from UBERON (anatomy), MONDO (disease), and CL (cell types).\n\n    Anatomical hierarchy: anatomical_system → organ → tissue\n    \"\"\"\n\n    organ: str = Field(\n        default=\"Unknown\",\n        description=\"High-level organ (e.g., brain, liver, heart, lung, breast)\",\n    )\n    tissue: str = Field(\n        default=\"Unknown\", description=\"Specific tissue within organ (UBERON-based)\"\n    )\n    anatomical_system: str = Field(\n        default=\"Unknown\",\n        description=\"Body system (e.g., cardiovascular, nervous, immune)\",\n    )\n    cell_type: str = Field(\n        default=\"Unknown\", description=\"Specific cell type (CL ontology-based)\"\n    )\n    disease: str = Field(\n        default=\"Unknown\", description=\"Disease or condition (MONDO ontology-based)\"\n    )\n    sex: str = Field(\n        default=\"Unknown\", description=\"Biological sex (male, female, mixed, Unknown)\"\n    )\n    development_stage: str = Field(\n        default=\"Unknown\",\n        description=\"Developmental stage (embryonic, fetal, adult, etc.)\",\n    )\n    assay: str = Field(\n        default=\"Unknown\",\n        description=\"Experimental assay type (RNA-seq, scRNA-seq, ATAC-seq, etc.)\",\n    )\n    organism: str = Field(\n        default=\"Unknown\", description=\"Species (Homo sapiens, Mus musculus, etc.)\"\n    )\n\n\nDEFAULT_LLM_PROVIDER = \"ollama/phi3\"\n\n\ndef load_ontology_reference() -> Dict[str, List[str]]:\n    \"\"\"\n    Returns comprehensive reference categories from UBERON, MONDO, and CL ontologies.\n\n    Returns:\n        Dictionary with ontology terms (organs, tissues, anatomical_systems, cell_types, diseases)\n    \"\"\"\n    import json\n    import os\n\n    current_dir = os.path.dirname(__file__)\n    ontology_path = os.path.join(current_dir, \"ontology_reference.json\")\n\n    if not os.path.exists(ontology_path):\n        raise FileNotFoundError(\n            f\"Ontology reference not found at {ontology_path}. \"\n            \"Please ensure ontology_reference.json is in the pysradb package directory.\"\n        )\n\n    with open(ontology_path) as f:\n        return json.load(f)\n\n\nclass LLMMetadataExtractor(MetadataExtractor):\n    \"\"\"Extract metadata using Large Language Models via Instructor.\"\"\"\n\n    def __init__(\n        self,\n        backend: str = DEFAULT_LLM_PROVIDER,\n        model: Optional[str] = None,\n        api_key: Optional[str] = None,\n        base_url: Optional[str] = None,\n        temperature: float = 0.0,\n        max_retries: int = 3,\n        **kwargs,\n    ):\n        super().__init__()\n        self.provider = backend or DEFAULT_LLM_PROVIDER\n\n        self.model = model\n\n        env_key = self._provider_env_key()\n        self.api_key = api_key or (os.getenv(env_key) if env_key else None)\n        self.base_url = base_url\n        self.temperature = temperature\n        self.max_retries = max_retries\n        self.kwargs = kwargs\n        self.client = self._initialize_client()\n\n    def _provider_env_key(self) -> Optional[str]:\n        provider_name = self.provider.split(\"/\")[0]\n        if provider_name.lower() == \"openai\":\n            return \"OPENAI_API_KEY\"\n        if provider_name.lower() == \"anthropic\":\n            return \"ANTHROPIC_API_KEY\"\n        if provider_name.lower() == \"google\":\n            return \"GOOGLE_API_KEY\"\n        if provider_name.lower() == \"mistral\":\n            return \"MISTRAL_API_KEY\"\n        if provider_name.lower() == \"groq\":\n            return \"GROQ_API_KEY\"\n        return None\n\n    def _check_ollama_available(self) -> bool:\n        \"\"\"Check if ollama is installed and running.\"\"\"\n        try:\n            import subprocess\n\n            import requests\n\n            try:\n                subprocess.run(\n                    [\"ollama\", \"--version\"], capture_output=True, check=True, timeout=10\n                )\n            except (\n                subprocess.CalledProcessError,\n                FileNotFoundError,\n                subprocess.TimeoutExpired,\n            ):\n                return False\n\n            try:\n                response = requests.get(\"http://localhost:11434/api/tags\", timeout=5)\n                return response.status_code == 200\n            except (requests.RequestException, requests.Timeout):\n                return False\n\n        except Exception:\n            return False\n\n    def _initialize_client(self):\n        try:\n            import instructor\n        except ImportError:\n            if _prompt_install_enrichment_dependencies():\n                import instructor\n            else:\n                raise ImportError(\n                    \"instructor package required. Install with: pip install 'pysradb[enrichment]'\"\n                )\n\n        client_kwargs = self.kwargs.copy()\n        if self.base_url:\n            client_kwargs.setdefault(\"client_kwargs\", {})\n            client_kwargs[\"client_kwargs\"].setdefault(\"base_url\", self.base_url)\n\n        provider_name = self.provider.split(\"/\")[0].lower()\n\n        if provider_name == \"ollama\":\n            if not self._check_ollama_available():\n                raise RuntimeError(\n                    \"Ollama is not installed or not running. \"\n                    \"Please install ollama from https://ollama.ai/ and start it with 'ollama serve'. \"\n                    \"Then pull a model with 'ollama pull phi3:latest' (or another model like 'meditron-7b').\"\n                )\n\n        if provider_name in [\"ollama\", \"local\"] and \"mode\" not in client_kwargs:\n            client_kwargs[\"mode\"] = instructor.Mode.JSON\n\n        return instructor.from_provider(\n            self.provider,\n            api_key=self.api_key,\n            **client_kwargs,\n        )\n\n    def _create_extraction_prompt(\n        self, text: str, fields: Optional[List[str]] = None\n    ) -> str:\n        \"\"\"Create prompt for metadata extraction.\"\"\"\n        default_fields = [\n            \"organ\",\n            \"tissue\",\n            \"anatomical_system\",\n            \"cell_type\",\n            \"disease\",\n            \"sex\",\n            \"development_stage\",\n            \"assay\",\n            \"organism\",\n        ]\n        target_fields = fields or default_fields\n\n        prompt = f\"\"\"Extract biological metadata using ontology-based terminology (UBERON, MONDO, CL).\n\nCRITICAL PRIORITY RULE:\nIf a field is explicitly labeled in the metadata, prioritize that information. You may make reasonable generalizations\n(e.g., \"CD19+ B cells\" → \"b cells\", \"CD4+ T cells\" → \"t cells\"), but DO NOT over-generalize to broader categories.\n\nBULK TISSUE AND WHOLE-SAMPLE HANDLING (IMPORTANT):\nWhen the metadata contains keywords indicating bulk tissue or whole samples (bulk, PDX, xenograft, tumor, tissue,\nwhole tissue, homogenate), the sample contains MIXED CELL TYPES. Do NOT invent specific cell types:\n- \"bulk RNA-seq from PDX\" → cell_type: \"Unknown\" (NOT \"neuron\" or any specific cell type)\n- \"tumor tissue\" → cell_type: \"Unknown\", organ/tissue from source if clear (NOT inferred from invented cell types)\n- \"xenograft\" → cell_type: \"Unknown\" (multiple cell types present)\n- \"whole tissue\" → cell_type: \"Unknown\" (NOT a specific cell type)\nRULE: If cell_type is not explicitly stated AND the sample is described as bulk/whole/tissue/tumor/PDX, return \"Unknown\" for cell_type.\n\nExamples of CORRECT extraction:\n- \"cell type: CD19+ B cells\" → cell_type: \"b cells\" or \"cd19+ b cells\" (NOT \"pbmc\" - too broad)\n- \"cell type: CD4+ T cells\" → cell_type: \"t cells\" or \"cd4+ t cells\" (NOT \"lymphocyte\" or \"pbmc\" - too broad)\n- \"cell type: hepatocytes\" → cell_type: \"hepatocyte\" (NOT \"liver cells\" - less specific)\n- \"tissue: prefrontal cortex\" → tissue: \"prefrontal cortex\" or \"brain\" (NOT \"nervous tissue\" - too broad)\n- \"disease: Multiple sclerosis\" → disease: \"multiple sclerosis\" (NOT \"healthy\" or \"autoimmune disease\")\n- \"bulk RNA-seq from PDX\" → cell_type: \"Unknown\" (NOT \"neuron\" or invented types), organ: \"Unknown\" if not stated\n- \"sample_description: tumor tissue\" → cell_type: \"Unknown\", organ: \"Unknown\" (do not invent)\n\nCELL TYPE INFERENCE RULES (only when NOT explicitly stated AND NOT bulk/PDX/tumor/whole tissue):\n- Cell types indicate their origin organ/tissue. Use this biological knowledge ONLY for purified cell populations:\n  * Blood cells (PBMC, T cell, B cell, lymphocyte, monocyte, macrophage, NK cell) → organ: blood, tissue: peripheral blood, system: immune system\n  * Brain cells (neuron, astrocyte, microglia, oligodendrocyte) → organ: brain, tissue: brain tissue, system: nervous system\n  * Liver cells (hepatocyte) → organ: liver, tissue: liver parenchyma, system: digestive system\n  * Heart cells (cardiomyocyte) → organ: heart, tissue: cardiac tissue, system: cardiovascular system\n  * Lung cells (pneumocyte, alveolar cell) → organ: lung, tissue: lung parenchyma, system: respiratory system\n  * Apply similar biological reasoning for OTHER PURIFIED cell types ONLY\n\nEXTRACTION RULES:\n1. **cell_type**: FIRST check for \"cell type:\", \"cell_type:\", \"celltype:\" or \"cellType:\" labels. If not stated, check if sample is bulk/PDX/tumor/tissue/xenograft - if yes, return \"Unknown\". Otherwise, use stated value or reasonable generalization (CD19+ B cells → b cells). NEVER invent cell types.\n2. **disease**: FIRST check for \"disease:\", \"disease status:\", or \"condition:\" labels. Use exact disease name. \"Normal\"/\"control\"/\"WT\"→healthy only if NO disease is stated.\n3. **tissue**: FIRST check for \"tissue:\", \"source_name:\" labels. Use stated value or reasonable generalization. Otherwise infer from EXPLICITLY STATED cell_type/organ. Do NOT infer from invented cell types.\n4. **organ**: Look for explicit organ name. Do NOT infer organ from invented cell types. Return \"Unknown\" if not stated.\n5. **anatomical_system**: Derive from EXPLICIT organ/cell_type information only. Return \"Unknown\" if not determinable.\n6. **sex**: F=female, M=male. Return: male, female, mixed, or Unknown. Lowercase.\n7. **development_stage**: From age - handle 'y' for years, 'm' for months (e.g., 17m=17 months=1.4 years). Use: 0-2y=infant, 3-12y=child, 13-18y=adolescent, 19-64y=adult, 65+=aged. Convert months to years when needed. Lowercase.\n8. **assay**: RNA-seq, scRNA-seq, CITE-seq, ATAC-seq, Bisulfite-Seq, etc. Lowercase.\n9. **organism**: Homo sapiens, Mus musculus, or common names. Lowercase unless scientific.\n\nEXAMPLES showing CORRECT extraction with reasonable generalization:\n\"cell type: CD19+ B cells, disease status: Multiple sclerosis\" → cell_type: \"b cells\" (acceptable: \"cd19+ b cells\"), disease: \"multiple sclerosis\"\n\"cell type: PBMC, tissue: peripheral blood\" → cell_type: \"pbmc\", tissue: \"peripheral blood\"\n\"cell_type: CD8+ memory T cells\" → cell_type: \"t cells\" (acceptable: \"cd8+ memory t cells\", \"memory t cells\")\n\"cell type: activated microglia\" → cell_type: \"microglia\" (acceptable: \"activated microglia\")\n\"sample_description: bulk RNA-seq from PDX, source: breast tumor\" → cell_type: \"Unknown\", organ: \"Unknown\", disease: \"Unknown\"\n\"sample_source: PDX1, sample_title: MJH1_G1M1, description: bulk RNA-seq\" → cell_type: \"Unknown\", organ: \"Unknown\" (do NOT invent \"neuron\")\n\nMetadata: {text}\n\nExtract (use \"Unknown\" only if truly unclear):\n\"\"\"\n        field_descriptions = {\n            \"organ\": \"High-level organ - use stated value only or return 'Unknown'. Do NOT invent from cell types. (lowercase)\",\n            \"tissue\": \"Specific tissue - use stated value or reasonable generalization from EXPLICIT data only. Return 'Unknown' if not stated. (lowercase)\",\n            \"anatomical_system\": \"Major body system - only if clearly stated or derivable from explicit organ/cell type. Return 'Unknown' otherwise. (lowercase)\",\n            \"cell_type\": \"Cell type ONLY if explicitly stated or if bulk/PDX/tumor/tissue keywords present → return 'Unknown'. Allow generalization (CD19+ B cells → b cells) but NEVER invent specific types. (lowercase)\",\n            \"disease\": \"Exact disease name if explicitly stated (e.g., 'multiple sclerosis'), or 'healthy' for controls. Return 'Unknown' if not stated. (lowercase)\",\n            \"sex\": \"Biological sex: 'male', 'female', 'mixed', or 'Unknown'\",\n            \"development_stage\": \"Life/developmental stage - from age if stated. Return 'Unknown' if age not provided. (lowercase)\",\n            \"assay\": \"Sequencing or experimental assay type (lowercase)\",\n            \"organism\": \"Species (scientific name preferred, or common name). Return 'Unknown' if not stated.\",\n        }\n\n        for field in target_fields:\n            if field in field_descriptions:\n                prompt += f\"- {field}: {field_descriptions[field]}\\n\"\n\n        prompt += f\"\"\"\nRespond in JSON format with these exact keys:\n{{\n  \"organ\": \"your answer\",\n  \"tissue\": \"your answer\",\n  \"anatomical_system\": \"your answer\",\n  \"cell_type\": \"your answer\",\n  \"disease\": \"your answer\",\n  \"sex\": \"your answer\",\n  \"development_stage\": \"your answer\",\n  \"assay\": \"your answer\",\n  \"organism\": \"your answer\"\n}}\"\"\"\n\n        return prompt\n\n    def _call_llm(self, prompt: str) -> Dict[str, Any]:\n        \"\"\"Call the LLM backend with the prompt.\"\"\"\n        try:\n            create_kwargs = {\n                \"messages\": [{\"role\": \"user\", \"content\": prompt}],\n                \"response_model\": _MetadataExtraction,\n                \"temperature\": self.temperature,\n                \"max_retries\": self.max_retries,\n            }\n\n            if self.model is not None:\n                create_kwargs[\"model\"] = self.model\n\n            response = self.client.chat.completions.create(**create_kwargs)\n            return response.model_dump()\n        except Exception as e:\n            self.logger.error(f\"LLM call failed for provider '{self.provider}': {e}\")\n            raise RuntimeError(\n                f\"LLM call failed with provider '{self.provider}': {e}\"\n            ) from e\n\n    def extract_metadata(\n        self, text: str, fields: Optional[List[str]] = None\n    ) -> Dict[str, Any]:\n        \"\"\"\n        Extract metadata from text using LLM.\n\n        Args:\n            text: Input text\n            fields: List of fields to extract\n\n        Returns:\n            Dictionary with extracted metadata\n        \"\"\"\n        if not text or text.strip() == \"\":\n            return {\n                \"organ\": \"Unknown\",\n                \"tissue\": \"Unknown\",\n                \"anatomical_system\": \"Unknown\",\n                \"cell_type\": \"Unknown\",\n                \"disease\": \"Unknown\",\n                \"sex\": \"Unknown\",\n                \"development_stage\": \"Unknown\",\n                \"assay\": \"Unknown\",\n                \"organism\": \"Unknown\",\n            }\n\n        prompt = self._create_extraction_prompt(text, fields)\n        data = self._call_llm(prompt)\n\n        if fields:\n            return {field: data.get(field, \"Unknown\") for field in fields}\n\n        return data\n\n\nclass EmbeddingMetadataExtractor(MetadataExtractor):\n    \"\"\"Extract metadata using embedding-based similarity matching.\"\"\"\n\n    def __init__(\n        self,\n        model_name: str = \"FremyCompany/BioLORD-2023\",\n        backend: str = \"sentence-transformers\",\n        reference_categories: Dict[str, List[str]] = None,\n        **kwargs,\n    ):\n        \"\"\"\n        Initialize embedding-based metadata extractor.\n\n        Args:\n            model_name: Embedding model name (default: FremyCompany/BioLORD-2023 - optimized for biomedical text)\n            backend: Embedding backend (\"sentence-transformers\", \"fastembed\")\n            reference_categories: Reference categories for classification (required)\n            **kwargs: Additional parameters for embedding model\n\n        Raises:\n            ValueError: If reference_categories is not provided\n        \"\"\"\n        super().__init__()\n        if reference_categories is None:\n            raise ValueError(\n                \"reference_categories is required for embedding-based extraction. \"\n                \"Please provide a dictionary mapping category names to lists of reference terms. \"\n                \"Example: {'tissue': ['blood', 'brain', 'liver'], 'disease': ['healthy', 'cancer']}\"\n            )\n        self.model_name = model_name\n        self.backend = backend\n        self.kwargs = kwargs\n        self.model = self._load_model()\n        self.reference_categories = reference_categories\n        self.reference_embeddings = self._compute_reference_embeddings()\n\n    def _load_model(self):\n        \"\"\"Load the embedding model.\"\"\"\n        if self.backend == \"sentence-transformers\":\n            try:\n                from sentence_transformers import SentenceTransformer\n\n                return SentenceTransformer(self.model_name)\n            except ImportError:\n                if _prompt_install_enrichment_dependencies():\n                    from sentence_transformers import SentenceTransformer\n\n                    return SentenceTransformer(self.model_name)\n                else:\n                    raise ImportError(\n                        \"sentence-transformers required. Install with: pip install sentence-transformers\"\n                    )\n        elif self.backend == \"fastembed\":\n            try:\n                from fastembed import TextEmbedding\n\n                return TextEmbedding(model_name=self.model_name)\n            except ImportError:\n                if _prompt_install_enrichment_dependencies():\n                    from fastembed import TextEmbedding\n\n                    return TextEmbedding(model_name=self.model_name)\n                else:\n                    raise ImportError(\n                        \"fastembed required. Install with: pip install fastembed\"\n                    )\n        else:\n            raise ValueError(f\"Unsupported backend: {self.backend}\")\n\n    def _get_cache_path(self) -> str:\n        \"\"\"Get path for embedding cache file.\"\"\"\n        import hashlib\n        import os\n        from pathlib import Path\n\n        cache_dir = Path.home() / \".cache\" / \"pysradb\"\n        cache_dir.mkdir(parents=True, exist_ok=True)\n\n        cache_key = f\"{self.model_name}_{sorted(self.reference_categories.keys())}\"\n        cache_hash = hashlib.md5(cache_key.encode()).hexdigest()[:16]\n\n        return str(cache_dir / f\"embeddings_{cache_hash}.npz\")\n\n    def _compute_reference_embeddings(self) -> Dict[str, Any]:\n        \"\"\"Compute embeddings for reference categories with caching.\"\"\"\n        import os\n\n        import numpy as np\n\n        cache_path = self._get_cache_path()\n\n        if os.path.exists(cache_path):\n            try:\n                cached = np.load(cache_path, allow_pickle=True)\n                embeddings = {k: cached[k] for k in cached.files}\n                self.logger.info(f\"Loaded cached embeddings from {cache_path}\")\n                return embeddings\n            except Exception as e:\n                self.logger.warning(f\"Failed to load cache: {e}\")\n\n        self.logger.info(\n            f\"Computing embeddings for {sum(len(v) for v in self.reference_categories.values())} terms...\"\n        )\n        embeddings = {}\n        for category, terms in self.reference_categories.items():\n            if self.backend == \"sentence-transformers\":\n                embeddings[category] = self.model.encode(terms, show_progress_bar=False)\n            elif self.backend == \"fastembed\":\n                embeddings[category] = np.array(list(self.model.embed(terms)))\n\n        try:\n            np.savez(cache_path, **embeddings)\n            self.logger.info(f\"Cached embeddings to {cache_path}\")\n        except Exception as e:\n            self.logger.warning(f\"Failed to cache embeddings: {e}\")\n\n        return embeddings\n\n    def _find_best_match(\n        self, text_embedding, category: str, threshold: float = 0.3\n    ) -> str:\n        \"\"\"Find best matching category using cosine similarity.\"\"\"\n        import numpy as np\n        from sklearn.metrics.pairwise import cosine_similarity\n\n        if category not in self.reference_embeddings:\n            return \"Unknown\"\n\n        ref_embeddings = self.reference_embeddings[category]\n        text_emb = np.array(text_embedding).reshape(1, -1)\n\n        similarities = cosine_similarity(text_emb, ref_embeddings)[0]\n        max_idx = np.argmax(similarities)\n        max_sim = similarities[max_idx]\n\n        if max_sim >= threshold:\n            return self.reference_categories[category][max_idx]\n        else:\n            return \"Unknown\"\n\n    def _parse_structured_fields(self, text: str) -> Dict[str, str]:\n        \"\"\"\n        Parse structured text in 'field: value' format.\n\n        Args:\n            text: Input text with potential 'field: value' patterns\n\n        Returns:\n            Dictionary of parsed field-value pairs\n        \"\"\"\n        import re\n\n        parsed = {}\n        # Pattern to match \"field_name: value\" where value extends to next field or end\n        pattern = r\"([a-z_]+):\\s*([^.]+?)(?:\\.|$)\"\n        matches = re.findall(pattern, text, re.IGNORECASE)\n\n        for field_name, value in matches:\n            parsed[field_name.strip().lower()] = value.strip()\n\n        return parsed\n\n    def _match_value_or_text(\n        self, value: Optional[str], full_text: str, category: str\n    ) -> str:\n        \"\"\"\n        Match a specific extracted value or fall back to full text matching.\n\n        This method first tries to match an extracted value (e.g., \"F\" from \"sex: F\")\n        directly against reference categories. If that fails or no value is provided,\n        it falls back to matching the full combined text.\n\n        Args:\n            value: Extracted field value (e.g., \"F\" from \"sex: F\")\n            full_text: Full combined text for fallback matching\n            category: Category name to match against\n\n        Returns:\n            Best matching category value or \"Unknown\"\n        \"\"\"\n        import numpy as np\n\n        if value and category in self.reference_categories:\n            try:\n                if self.backend == \"sentence-transformers\":\n                    value_embedding = self.model.encode(value)\n                elif self.backend == \"fastembed\":\n                    value_embedding = np.array(list(self.model.embed([value])))[0]\n\n                result = self._find_best_match(value_embedding, category)\n                if result != \"Unknown\":\n                    return result\n            except Exception:\n                pass  # Fall through to full text matching\n\n        # Fall back to full text matching\n        if category in self.reference_categories:\n            try:\n                if self.backend == \"sentence-transformers\":\n                    text_embedding = self.model.encode(full_text)\n                elif self.backend == \"fastembed\":\n                    text_embedding = np.array(list(self.model.embed([full_text])))[0]\n\n                return self._find_best_match(text_embedding, category)\n            except Exception:\n                return \"Unknown\"\n\n        return \"Unknown\"\n\n    def extract_metadata(\n        self, text: str, fields: Optional[List[str]] = None\n    ) -> Dict[str, Any]:\n        \"\"\"\n        Extract metadata using embedding similarity.\n\n        Args:\n            text: Input text\n            fields: List of fields to extract\n\n        Returns:\n            Dictionary with extracted metadata\n        \"\"\"\n        if not text or text.strip() == \"\":\n            return {\n                \"organ\": \"Unknown\",\n                \"tissue\": \"Unknown\",\n                \"anatomical_system\": \"Unknown\",\n                \"cell_type\": \"Unknown\",\n                \"disease\": \"Unknown\",\n                \"sex\": \"Unknown\",\n                \"development_stage\": \"Unknown\",\n                \"assay\": \"Unknown\",\n                \"organism\": \"Unknown\",\n            }\n\n        structured_fields = self._parse_structured_fields(text)\n\n        organ = self._match_value_or_text(\n            structured_fields.get(\"organ\") or structured_fields.get(\"source_name\"),\n            text,\n            \"organs\",\n        )\n        tissue = self._match_value_or_text(\n            structured_fields.get(\"tissue\"),\n            text,\n            \"tissues\",\n        )\n        cell_type = self._match_value_or_text(\n            structured_fields.get(\"cell_type\"), text, \"cell_types\"\n        )\n        disease = self._match_value_or_text(\n            structured_fields.get(\"disease\"), text, \"diseases\"\n        )\n        anatomical_system = self._match_value_or_text(\n            structured_fields.get(\"anatomical_system\"), text, \"anatomical_systems\"\n        )\n        sex = self._match_value_or_text(structured_fields.get(\"sex\"), text, \"sex\")\n        development_stage = self._match_value_or_text(\n            structured_fields.get(\"age\") or structured_fields.get(\"development_stage\"),\n            text,\n            \"development_stage\",\n        )\n        assay = self._match_value_or_text(\n            structured_fields.get(\"assay\") or structured_fields.get(\"sample_title\"),\n            text,\n            \"assay\",\n        )\n        organism = self._match_value_or_text(\n            structured_fields.get(\"organism\"), text, \"organism\"\n        )\n\n        return {\n            \"organ\": organ,\n            \"tissue\": tissue,\n            \"anatomical_system\": anatomical_system,\n            \"cell_type\": cell_type,\n            \"disease\": disease,\n            \"sex\": sex,\n            \"development_stage\": development_stage,\n            \"assay\": assay,\n            \"organism\": organism,\n        }\n\n\ndef create_metadata_extractor(\n    method: str = \"llm\",\n    backend: Optional[str] = None,\n    model: Optional[str] = None,\n    **kwargs,\n) -> MetadataExtractor:\n    \"\"\"\n    Factory function to create metadata extractor.\n\n    Args:\n        method: Extraction method (``llm`` or ``embedding``)\n        backend: Backend for the method\n        model: Model name\n        kwargs: Additional parameters (as keyword arguments)\n\n    Returns:\n        MetadataExtractor instance\n\n    Examples:\n        >>> # LLM-based with Instructor (default provider)\n        >>> extractor = create_metadata_extractor(method=\"llm\")\n        >>>\n        >>> # Embedding-based (default: BioLORD-2023 for biomedical text)\n        >>> extractor = create_metadata_extractor(method=\"embedding\")\n    \"\"\"\n    if method.lower() == \"llm\":\n        backend = backend or DEFAULT_LLM_PROVIDER\n        return LLMMetadataExtractor(backend=backend, model=model, **kwargs)\n    elif method.lower() == \"embedding\":\n        backend = backend or \"sentence-transformers\"\n        return EmbeddingMetadataExtractor(\n            model_name=model or \"FremyCompany/BioLORD-2023\",\n            backend=backend,\n            **kwargs,\n        )\n    else:\n        raise ValueError(f\"Unknown method: {method}. Choose 'llm' or 'embedding'\")\n\n\ndef apply_dataframe_enrichment(\n    df: pd.DataFrame,\n    method: str = \"embedding\",\n    backend: Optional[str] = None,\n    model: Optional[str] = None,\n    text_column: Optional[str] = None,\n    show_progress: bool = True,\n    prefix: str = \"guessed_\",\n) -> pd.DataFrame:\n    \"\"\"\n    Utility function to apply metadata enrichment to a DataFrame.\n\n    This is a convenience function that handles:\n    - Column auto-detection\n    - Extractor initialization\n    - Error handling\n    - Progress display\n\n    Args:\n        df: Input DataFrame\n        method: Enrichment method ('llm' or 'embedding')\n        backend: Backend for the method\n        model: Model name\n        text_column: Column to use (auto-detected if None)\n        show_progress: Show progress bar\n        prefix: Prefix for new columns\n\n    Returns:\n        Enriched DataFrame\n\n    Example:\n        >>> from pysradb.metadata_enrichment import apply_dataframe_enrichment\n        >>> enriched_df = apply_dataframe_enrichment(\n        ...     df,\n        ...     method=\"embedding\",\n        ...     text_column=\"experiment_title\"\n        ... )\n    \"\"\"\n    if df is None or df.empty:\n        return df\n\n    try:\n        extractor = create_metadata_extractor(\n            method=method, backend=backend, model=model\n        )\n\n        if text_column is None:\n            candidates = [\n                \"experiment_title\",\n                \"experiment_desc\",\n                \"study_title\",\n                \"description\",\n                \"sample_title\",\n                \"source_name\",\n                \"tissue\",\n                \"condition\",\n                \"treatment\",\n                \"age\",\n                \"sex\",\n                \"strain\",\n            ]\n            for candidate in candidates:\n                if candidate in df.columns:\n                    text_column = candidate\n                    break\n\n        if text_column and text_column in df.columns:\n            return extractor.enrich_dataframe(\n                df, text_column=text_column, prefix=prefix, show_progress=show_progress\n            )\n        else:\n            logger.warning(\"No suitable text column found for enrichment\")\n            return df\n\n    except ImportError as e:\n        logger.warning(f\"Enrichment dependencies not installed: {e}\")\n        return df\n    except Exception as e:\n        logger.warning(f\"Enrichment failed: {e}\")\n        return df\n"
  },
  {
    "path": "pysradb/ontology_reference.json",
    "content": "{\n  \"organs\": [\n    \"brain\", \"heart\", \"liver\", \"lung\", \"kidney\", \"spleen\", \"pancreas\", \"stomach\",\n    \"intestine\", \"colon\", \"small intestine\", \"duodenum\", \"jejunum\", \"ileum\",\n    \"skin\", \"muscle\", \"bone\", \"adipose tissue\", \"fat\", \"bone marrow\",\n    \"thymus\", \"lymph node\", \"tonsil\", \"appendix\",\n    \"eye\", \"retina\", \"cornea\", \"lens\",\n    \"ear\", \"cochlea\",\n    \"tongue\", \"tooth\", \"salivary gland\",\n    \"esophagus\", \"gallbladder\", \"rectum\",\n    \"bladder\", \"urinary bladder\", \"urethra\", \"ureter\",\n    \"testis\", \"ovary\", \"uterus\", \"prostate\", \"mammary gland\", \"breast\", \"placenta\",\n    \"adrenal gland\", \"pituitary gland\", \"thyroid gland\", \"parathyroid gland\", \"pineal gland\",\n    \"trachea\", \"bronchus\", \"diaphragm\",\n    \"aorta\", \"artery\", \"vein\", \"capillary\",\n    \"nose\", \"nasal cavity\", \"sinus\", \"pharynx\", \"larynx\",\n    \"cerebellum\", \"cerebral cortex\", \"hippocampus\", \"amygdala\", \"striatum\", \"thalamus\", \"hypothalamus\",\n    \"spinal cord\", \"dorsal root ganglion\", \"sympathetic ganglion\",\n    \"skeletal muscle\", \"cardiac muscle\", \"smooth muscle\"\n  ],\n  \"tissues\": [\n    \"blood\", \"plasma\", \"serum\", \"whole blood\", \"peripheral blood\",\n    \"epithelium\", \"epithelial tissue\", \"endothelium\", \"mesothelium\",\n    \"connective tissue\", \"adipose tissue\", \"cartilage\", \"bone tissue\",\n    \"nervous tissue\", \"neural tissue\", \"brain tissue\", \"spinal cord tissue\",\n    \"muscle tissue\", \"skeletal muscle tissue\", \"cardiac muscle tissue\", \"smooth muscle tissue\",\n    \"lymphoid tissue\", \"myeloid tissue\", \"hematopoietic tissue\",\n    \"skin tissue\", \"dermal tissue\", \"epidermal tissue\",\n    \"vascular tissue\", \"blood vessel\",\n    \"glandular tissue\", \"secretory tissue\",\n    \"lung tissue\", \"alveolar tissue\", \"bronchial tissue\",\n    \"liver tissue\", \"hepatic tissue\",\n    \"kidney tissue\", \"renal tissue\", \"cortex\", \"medulla\", \"glomerulus\",\n    \"heart tissue\", \"myocardium\", \"endocardium\", \"pericardium\",\n    \"intestinal tissue\", \"gut tissue\", \"colonic tissue\",\n    \"pancreatic tissue\", \"pancreatic islet\",\n    \"thymic tissue\", \"splenic tissue\",\n    \"bone marrow tissue\", \"stromal tissue\",\n    \"tumor tissue\", \"cancerous tissue\", \"malignant tissue\", \"benign tissue\",\n    \"fibrotic tissue\", \"scar tissue\", \"necrotic tissue\",\n    \"embryonic tissue\", \"fetal tissue\", \"placental tissue\",\n    \"stem cell niche\", \"germinal center\",\n    \"white matter\", \"gray matter\", \"cortical tissue\", \"subcortical tissue\"\n  ],\n  \"anatomical_systems\": [\n    \"nervous system\", \"central nervous system\", \"peripheral nervous system\", \"autonomic nervous system\",\n    \"cardiovascular system\", \"circulatory system\", \"vascular system\",\n    \"respiratory system\", \"pulmonary system\",\n    \"digestive system\", \"gastrointestinal system\", \"alimentary system\",\n    \"urinary system\", \"renal system\", \"excretory system\",\n    \"reproductive system\", \"genital system\",\n    \"endocrine system\", \"hormonal system\",\n    \"immune system\", \"lymphatic system\", \"hematopoietic system\",\n    \"musculoskeletal system\", \"skeletal system\", \"muscular system\",\n    \"integumentary system\", \"skin system\",\n    \"sensory system\", \"visual system\", \"auditory system\", \"olfactory system\", \"gustatory system\"\n  ],\n  \"cell_types\": [\n    \"T cell\", \"B cell\", \"NK cell\", \"natural killer cell\",\n    \"CD4 T cell\", \"CD8 T cell\", \"regulatory T cell\", \"Treg\", \"helper T cell\", \"cytotoxic T cell\",\n    \"naive T cell\", \"memory T cell\", \"effector T cell\", \"activated T cell\",\n    \"naive B cell\", \"memory B cell\", \"plasma cell\", \"plasmablast\",\n    \"monocyte\", \"macrophage\", \"dendritic cell\", \"DC\",\n    \"neutrophil\", \"eosinophil\", \"basophil\", \"mast cell\",\n    \"erythrocyte\", \"red blood cell\", \"RBC\",\n    \"platelet\", \"thrombocyte\", \"megakaryocyte\",\n    \"hematopoietic stem cell\", \"HSC\", \"progenitor cell\",\n    \"fibroblast\", \"myofibroblast\",\n    \"endothelial cell\", \"vascular endothelial cell\", \"lymphatic endothelial cell\",\n    \"epithelial cell\", \"keratinocyte\", \"enterocyte\", \"colonocyte\",\n    \"neuron\", \"neuronal cell\", \"pyramidal neuron\", \"interneuron\", \"motor neuron\", \"sensory neuron\",\n    \"astrocyte\", \"oligodendrocyte\", \"microglia\", \"ependymal cell\",\n    \"Schwann cell\", \"satellite glial cell\",\n    \"hepatocyte\", \"cholangiocyte\", \"Kupffer cell\", \"stellate cell\",\n    \"cardiomyocyte\", \"cardiac fibroblast\", \"pericyte\",\n    \"podocyte\", \"mesangial cell\", \"tubular epithelial cell\",\n    \"pneumocyte\", \"type I pneumocyte\", \"type II pneumocyte\", \"alveolar macrophage\", \"club cell\",\n    \"beta cell\", \"alpha cell\", \"delta cell\", \"acinar cell\", \"ductal cell\",\n    \"adipocyte\", \"preadipocyte\", \"brown adipocyte\", \"white adipocyte\",\n    \"osteoblast\", \"osteoclast\", \"osteocyte\", \"chondrocyte\",\n    \"smooth muscle cell\", \"skeletal muscle cell\", \"myocyte\",\n    \"stem cell\", \"embryonic stem cell\", \"ESC\", \"induced pluripotent stem cell\", \"iPSC\",\n    \"mesenchymal stem cell\", \"MSC\", \"neural stem cell\", \"NSC\",\n    \"cancer cell\", \"tumor cell\", \"malignant cell\",\n    \"germ cell\", \"spermatocyte\", \"oocyte\", \"sperm\", \"egg\",\n    \"Leydig cell\", \"Sertoli cell\", \"granulosa cell\", \"theca cell\",\n    \"trophoblast\", \"syncytiotrophoblast\", \"cytotrophoblast\",\n    \"photoreceptor\", \"rod cell\", \"cone cell\", \"retinal ganglion cell\",\n    \"melanocyte\", \"Langerhans cell\",\n    \"goblet cell\", \"Paneth cell\", \"enteroendocrine cell\",\n    \"thyroid follicular cell\", \"parafollicular cell\", \"C cell\"\n  ],\n  \"diseases\": [\n    \"healthy\", \"normal\", \"control\", \"wild type\", \"WT\",\n    \"cancer\", \"carcinoma\", \"sarcoma\", \"melanoma\", \"lymphoma\", \"leukemia\", \"myeloma\",\n    \"tumor\", \"neoplasm\", \"malignancy\", \"metastasis\",\n    \"lung cancer\", \"breast cancer\", \"colon cancer\", \"colorectal cancer\", \"prostate cancer\",\n    \"liver cancer\", \"hepatocellular carcinoma\", \"HCC\",\n    \"pancreatic cancer\", \"pancreatic adenocarcinoma\",\n    \"brain tumor\", \"glioblastoma\", \"glioma\", \"astrocytoma\",\n    \"melanoma\", \"skin cancer\", \"basal cell carcinoma\", \"squamous cell carcinoma\",\n    \"ovarian cancer\", \"cervical cancer\", \"endometrial cancer\", \"uterine cancer\",\n    \"kidney cancer\", \"renal cell carcinoma\",\n    \"bladder cancer\", \"urothelial carcinoma\",\n    \"gastric cancer\", \"stomach cancer\",\n    \"acute lymphoblastic leukemia\", \"ALL\", \"acute myeloid leukemia\", \"AML\",\n    \"chronic lymphocytic leukemia\", \"CLL\", \"chronic myeloid leukemia\", \"CML\",\n    \"multiple myeloma\", \"Hodgkin lymphoma\", \"non-Hodgkin lymphoma\",\n    \"diabetes\", \"diabetes mellitus\", \"type 1 diabetes\", \"T1D\", \"type 2 diabetes\", \"T2D\",\n    \"obesity\", \"metabolic syndrome\",\n    \"Alzheimer's disease\", \"AD\", \"Parkinson's disease\", \"PD\",\n    \"multiple sclerosis\", \"MS\", \"amyotrophic lateral sclerosis\", \"ALS\",\n    \"cardiovascular disease\", \"heart disease\", \"coronary artery disease\", \"CAD\",\n    \"atherosclerosis\", \"myocardial infarction\", \"heart attack\", \"stroke\",\n    \"heart failure\", \"cardiomyopathy\", \"arrhythmia\",\n    \"hypertension\", \"high blood pressure\", \"hypotension\",\n    \"asthma\", \"chronic obstructive pulmonary disease\", \"COPD\", \"emphysema\",\n    \"pulmonary fibrosis\", \"interstitial lung disease\",\n    \"inflammatory bowel disease\", \"IBD\", \"Crohn's disease\", \"ulcerative colitis\",\n    \"rheumatoid arthritis\", \"RA\", \"osteoarthritis\", \"arthritis\",\n    \"systemic lupus erythematosus\", \"SLE\", \"lupus\",\n    \"psoriasis\", \"eczema\", \"atopic dermatitis\", \"dermatitis\",\n    \"chronic kidney disease\", \"CKD\", \"renal failure\", \"kidney failure\",\n    \"liver disease\", \"cirrhosis\", \"hepatitis\", \"fatty liver disease\", \"NAFLD\",\n    \"infection\", \"bacterial infection\", \"viral infection\", \"fungal infection\",\n    \"sepsis\", \"septic shock\", \"inflammation\",\n    \"COVID-19\", \"SARS-CoV-2\", \"coronavirus\",\n    \"influenza\", \"flu\", \"pneumonia\",\n    \"HIV\", \"AIDS\",\n    \"tuberculosis\", \"TB\",\n    \"fibrosis\", \"tissue damage\", \"injury\", \"wound\", \"lesion\",\n    \"autoimmune disease\", \"immunodeficiency\",\n    \"allergy\", \"allergic reaction\", \"hypersensitivity\",\n    \"anemia\", \"thrombocytopenia\", \"neutropenia\",\n    \"congenital disorder\", \"genetic disorder\", \"inherited disease\",\n    \"syndrome\", \"rare disease\"\n  ],\n  \"sex\": [\n    \"male\", \"M\", \"men\", \"man\", \"boy\",\n    \"female\", \"F\", \"women\", \"woman\", \"girl\",\n    \"mixed\", \"both\", \"male and female\", \"combined\",\n    \"unknown\", \"not specified\", \"unspecified\", \"NA\", \"N/A\"\n  ],\n  \"development_stage\": [\n    \"embryonic\", \"embryo\", \"embryonic day\", \"E\",\n    \"fetal\", \"fetus\", \"gestational week\", \"GW\", \"prenatal\",\n    \"neonatal\", \"newborn\", \"neonate\", \"postnatal day\", \"P\",\n    \"infant\", \"baby\",\n    \"child\", \"childhood\", \"juvenile\", \"pediatric\",\n    \"adolescent\", \"teenager\", \"pubescent\",\n    \"adult\", \"young adult\", \"mature\", \"grown\",\n    \"middle aged\", \"middle age\",\n    \"aged\", \"elderly\", \"old\", \"geriatric\", \"senescent\",\n    \"E0\", \"E1\", \"E2\", \"E3\", \"E4\", \"E5\", \"E6\", \"E7\", \"E8\", \"E9\", \"E10\",\n    \"E11\", \"E12\", \"E13\", \"E14\", \"E15\", \"E16\", \"E17\", \"E18\",\n    \"P0\", \"P1\", \"P2\", \"P3\", \"P4\", \"P5\", \"P6\", \"P7\", \"P14\", \"P21\", \"P28\",\n    \"week\", \"weeks\", \"month\", \"months\", \"year\", \"years\",\n    \"trimester\", \"first trimester\", \"second trimester\", \"third trimester\",\n    \"stage\", \"developmental stage\", \"life stage\"\n  ],\n  \"assay\": [\n    \"RNA-seq\", \"RNA sequencing\", \"bulk RNA-seq\", \"total RNA-seq\",\n    \"scRNA-seq\", \"single cell RNA-seq\", \"single-cell RNA sequencing\", \"10x\", \"Drop-seq\",\n    \"snRNA-seq\", \"single nucleus RNA-seq\", \"single-nucleus RNA sequencing\",\n    \"ChIP-seq\", \"ChIP sequencing\", \"chromatin immunoprecipitation\",\n    \"ATAC-seq\", \"ATAC sequencing\", \"accessibility\",\n    \"snATAC-seq\", \"single nucleus ATAC-seq\",\n    \"scATAC-seq\", \"single cell ATAC-seq\",\n    \"DNase-seq\", \"DNase hypersensitivity\",\n    \"Hi-C\", \"chromosome conformation capture\",\n    \"CITE-seq\", \"cellular indexing\", \"protein + RNA\",\n    \"Perturb-seq\", \"CRISPR screen\", \"perturbation\",\n    \"Spatial transcriptomics\", \"spatial\", \"Visium\", \"MERFISH\", \"seqFISH\",\n    \"Bisulfite-seq\", \"BS-seq\", \"WGBS\", \"RRBS\", \"methylation\",\n    \"microarray\", \"expression array\", \"Affymetrix\", \"Illumina array\",\n    \"WGS\", \"whole genome sequencing\", \"genome sequencing\",\n    \"WES\", \"whole exome sequencing\", \"exome sequencing\",\n    \"targeted sequencing\", \"amplicon sequencing\", \"panel sequencing\",\n    \"miRNA-seq\", \"microRNA sequencing\", \"small RNA-seq\",\n    \"CUT&RUN\", \"CUT&Tag\", \"cleavage under targets\",\n    \"PRO-seq\", \"GRO-seq\", \"nascent RNA\",\n    \"ribosome profiling\", \"Ribo-seq\", \"translation\",\n    \"long-read sequencing\", \"PacBio\", \"Nanopore\", \"Oxford Nanopore\",\n    \"proteomics\", \"mass spectrometry\", \"LC-MS\",\n    \"metabolomics\", \"lipidomics\",\n    \"FACS\", \"flow cytometry\", \"fluorescence-activated cell sorting\",\n    \"imaging\", \"microscopy\", \"immunofluorescence\", \"immunohistochemistry\"\n  ],\n  \"organism\": [\n    \"Homo sapiens\", \"human\", \"humans\", \"H. sapiens\",\n    \"Mus musculus\", \"mouse\", \"mice\", \"M. musculus\",\n    \"Rattus norvegicus\", \"rat\", \"rats\", \"R. norvegicus\",\n    \"Danio rerio\", \"zebrafish\", \"D. rerio\",\n    \"Drosophila melanogaster\", \"fruit fly\", \"Drosophila\", \"D. melanogaster\",\n    \"Caenorhabditis elegans\", \"C. elegans\", \"nematode\", \"worm\",\n    \"Saccharomyces cerevisiae\", \"yeast\", \"S. cerevisiae\", \"budding yeast\",\n    \"Arabidopsis thaliana\", \"Arabidopsis\", \"A. thaliana\",\n    \"Escherichia coli\", \"E. coli\", \"bacteria\",\n    \"Sus scrofa\", \"pig\", \"swine\", \"porcine\",\n    \"Bos taurus\", \"cow\", \"cattle\", \"bovine\",\n    \"Gallus gallus\", \"chicken\", \"G. gallus\",\n    \"Macaca mulatta\", \"rhesus macaque\", \"monkey\", \"M. mulatta\",\n    \"Pan troglodytes\", \"chimpanzee\", \"chimp\", \"P. troglodytes\",\n    \"Canis lupus familiaris\", \"dog\", \"canine\",\n    \"Felis catus\", \"cat\", \"feline\",\n    \"Oryctolagus cuniculus\", \"rabbit\",\n    \"Xenopus tropicalis\", \"frog\", \"Xenopus\", \"X. tropicalis\",\n    \"Ciona intestinalis\", \"sea squirt\", \"tunicate\"\n  ]\n}\n"
  },
  {
    "path": "pysradb/search.py",
    "content": "\"\"\"This file contains the search classes for the search feature.\"\"\"\n\nimport os\nimport re\nimport sys\nimport time\nimport urllib\nimport xml.etree.ElementTree as Et\nfrom json import JSONDecodeError\n\nimport pandas as pd\nimport requests\nfrom tqdm.autonotebook import tqdm\n\nfrom .exceptions import IncorrectFieldException, MissingQueryException\nfrom .utils import requests_3_retries, scientific_name_to_taxid\n\nSEARCH_REQUEST_TIMEOUT = 20\nSRA_SEARCH_GROUP_SIZE = 300\n\n\nclass QuerySearch:\n    \"\"\"This is the base class for the search feature.\n\n    This class takes as input the user's search query, which has been\n    tokenized by the ArgParser. The query will be sent to either SRA or ENA\n    depending on the user's input, and the results will be returned as a\n    pandas dataframe.\n\n    Attributes\n    ----------\n    self.df: Pandas DataFrame\n        The search result belonging to this search instance\n\n    Parameters\n    ----------\n    verbosity : integer\n        The level of details of the search result.\n    return_max : int\n        The maximum number of entries to be returned.\n    query : str\n        The main query string.\n    accession : str\n        A relevant study / experiment / sample / run accession number.\n    organism  : str\n        Scientific name of the sample organism\n    layout : str\n        Library layout. Possible inputs: single, paired\n    mbases : int\n        Size of the sample of interest rounded to the nearest megabase.\n    publication_date : str\n        The publication date of the run in the format dd-mm-yyyy. If a\n        date range is desired, input should be in the format of\n        dd-mm-yyyy:dd-mm-yyyy\n    platform : str\n        Sequencing platform used for the run. Some possible inputs include:\n        illumina, ion torrent, oxford nanopore\n    selection : str\n        Library selection. Some possible inputs: cdna, chip, dnase, pcr\n    source : str\n        Library source. Some possible inputs: genomic, metagenomic,\n        transcriptomic\n    strategy : str\n        Library Preparation strategy. Some possible inputs: wgs, amplicon,\n        rna seq\n    title : str\n        Title of the experiment associated with the run\n    suppress_validation: bool\n        Defaults to False. If this is set to True, the user input format\n        checks will be skipped.\n        Setting this to True may cause the program to behave in unexpected\n        ways, but allows the user to search queries that does not pass the\n        format check.\n\n    Methods\n    -------\n    get_df()\n        Returns the dataframe storing this search result.\n\n    search()\n        Executes the search.\n\n    show_result_statistics()\n        Shows summary information about search results.\n\n    visualise_results()\n        Generate graphs that visualise the search results.\n\n    get_plot_objects():\n        Get the plot objects for plots generated.\n\n    \"\"\"\n\n    def __init__(\n        self,\n        verbosity=2,\n        return_max=20,\n        query=None,\n        accession=None,\n        organism=None,\n        layout=None,\n        mbases=None,\n        publication_date=None,\n        platform=None,\n        selection=None,\n        source=None,\n        strategy=None,\n        title=None,\n        suppress_validation=False,\n    ):\n        try:\n            int_verbosity = int(verbosity)\n            if int_verbosity not in range(4):\n                raise ValueError\n        except (TypeError, ValueError):\n            raise IncorrectFieldException(\n                f\"Incorrect verbosity format: {verbosity}\\n\"\n                \"Verbosity must be an integer between 0 to 3 inclusive.\"\n            )\n        try:\n            int_return_max = int(return_max)\n            if int_return_max <= 0:\n                raise ValueError\n        except (TypeError, ValueError):\n            raise IncorrectFieldException(\n                f\"Incorrect return_max format: {return_max}\\n\"\n                \"return_max must be a positive integer.\"\n            )\n        self.verbosity = int_verbosity\n        self.return_max = int_return_max\n        self.fields = {\n            \"query\": query,\n            \"accession\": accession,\n            \"organism\": organism,\n            \"layout\": layout,\n            \"mbases\": mbases,\n            \"publication_date\": publication_date,\n            \"platform\": platform,\n            \"selection\": selection,\n            \"source\": source,\n            \"strategy\": strategy,\n            \"title\": title,\n        }\n        for k in self.fields:\n            if type(self.fields[k]) == list:\n                self.fields[k] = \" \".join(self.fields[k])\n        self.df = pd.DataFrame()\n        # Verify that not all query fields are empty\n        if not any(self.fields.values()):\n            raise MissingQueryException()\n        if not suppress_validation:\n            self._validate_fields()\n        self.stats = {\n            \"study\": \"-\",\n            \"experiment\": \"-\",\n            \"run\": \"-\",\n            \"sample\": \"-\",\n            \"Date range\": \"-\",\n            \"Organisms\": \"-\",\n            \"Library strategy\": \"-\",\n            \"Library source\": \"-\",\n            \"Library selection\": \"-\",\n            \"Library layout\": \"-\",\n            \"Platform\": \"-\",\n            \"count_mean\": \"-\",\n            \"count_median\": \"-\",\n            \"count_stdev\": \"-\",\n        }\n        self.plot_objects = {}\n\n    def _input_multi_regex_checker(self, regex_matcher, input_query, error_message):\n        \"\"\"Checks if the user input match exactly 1 of the possible regex.\n\n        This is a helper method for _validate_fields. It takes as input a\n        dictionary of regex expression : accepted string by API pairs, and\n        an input string, and verifies that the input string matches exactly\n        one of the regex expressions.\n        Matching multiple expressions indicates the input string is\n        ambiguous, while matching none of the expressions suggests the\n        input will likely produce no results or an error.\n        Once matched, this method formats the user input so that it\n        can be accepted by the API to be queried, as ENA especially expect\n        case-sensitive exact matches for search queries.\n\n        Parameters\n        ----------\n        regex_matcher : dict\n            dictionary of regex expression : accepted string by API pairs.\n        input_query : str\n            input string for a particular query field.\n        error_message : str\n            error message to be shown if input_query does not match any of\n            the regex expressions in regex_matcher.\n\n        Returns\n        -------\n        tuple\n            tuple pair of (input_query, message).\n            message is \"\" if no format error has been identified, error\n            message otherwise.\n        \"\"\"\n        matched_strings = []\n        for regex_expression in regex_matcher:\n            if re.match(regex_expression, input_query, re.IGNORECASE):\n                matched_strings.append(regex_matcher[regex_expression])\n        if not matched_strings:\n            return input_query, error_message\n        elif len(matched_strings) == 1:\n            return matched_strings[0], \"\"\n        else:\n            message = (\n                f\"Multiple potential matches have been identified for {input_query}:\\n\"\n                f\"{matched_strings}\\n\"\n                f\"Please check your input.\\n\\n\"\n            )\n            return input_query, message\n\n    def _validate_fields(self):\n        \"\"\"Verifies that user input format is correct.\n\n        This helper function tries to match the input query strings from\n        the user to the exact string that is accepted by both SRA and ENA\n\n        Note: as of the implementation of this method, ENA does not have\n        a documentation page listing the accepted values for query\n        parameters. The list of parameters below were collected from ENA's\n        advanced search page: https://www.ebi.ac.uk/ena/browser/advanced-search\n\n        Updating new values:\n        If any new values are accepted by ENA, it should appear under\n        the corresponding parameter in the page. To update this method,\n        think of a regex that captures what the user may type for the new\n        value, and include it in the respective xxx_matcher dictionary\n        below as a regex:value key value pair.\n\n        Eg: if a new sequencing platform, Pokemon, is added to ENA,\n        navigate to \"Instrument Platform\" parameter on ENA's advanced\n        search page and copy the corresponding phrase (eg \"poKe_Mon\").\n        Then add the key value pair \".*poke.*\": \"poKe_Mon\" to\n        platform_matcher below.\n\n        Unlike SRA, ENA requires supplied param values to be exact match\n        to filter accordingly (eg \"cDNA_oligo_dT\"), which motivated this\n        feature.\n\n        Raises\n        ------\n        IncorrectFieldException\n            If the input to any query field is in the wrong format\n\n        \"\"\"\n\n        message = \"\"\n\n        # verify layout\n        if self.fields[\"layout\"] and str(self.fields[\"layout\"]).upper() not in [\n            \"SINGLE\",\n            \"PAIRED\",\n        ]:\n            message += (\n                f\"Incorrect layout field format: {self.fields['layout']}\\n\"\n                \"--layout must be either SINGLE or PAIRED\\n\\n\"\n            )\n        # verify mbases\n        if self.fields[\"mbases\"]:\n            try:\n                self.fields[\"mbases\"] = int(self.fields[\"mbases\"])\n                if self.fields[\"mbases\"] <= 0:\n                    raise ValueError\n            except (ValueError, TypeError):\n                message += (\n                    f\"Incorrect mbases format: {self.fields['mbases']}\\n\"\n                    f\"--mbases must be a positive integer\\n\\n\"\n                )\n        # verify publication_date\n        date_regex = \"(0[1-9]|[12][0-9]|3[01])-(0[1-9]|1[012])-(19|20)[0-9]{2}\"\n        if self.fields[\"publication_date\"] and not re.match(\n            f\"^{date_regex}(:{date_regex})?$\", self.fields[\"publication_date\"]\n        ):\n            message += (\n                f\"Incorrect publication date format: {self.fields['publication_date']}\\n\"\n                f\"Expected --publication-date format: dd-mm-yyyy or dd-mm-yyyy:dd-mm-yyyy, between 1900-2099\\n\\n\"\n            )\n        # verify platform\n        platform_matcher = {\n            \".*oxford.*|.*nanopore.*\": \"OXFORD_NANOPORE\",\n            \".*illumina.*\": \"ILLUMINA\",\n            \".*ion.*torrent.*\": \"ION_TORRENT\",\n            \".*capillary.*\": \"CAPILLARY\",\n            \".*pacbio.*|.*smrt.*\": \"PACBIO_SMRT\",\n            \".*abi.*solid.*\": \"ABI_SOLID\",\n            \".*bgi.*\": \"BGISEQ\",\n            \".*454.*\": \"LS454\",\n            \".*complete.*genomics.*\": \"COMPLETE_GENOMICS\",\n            \".*helicos.*\": \"HELICOS\",\n        }\n        if self.fields[\"platform\"]:\n            error_message = (\n                f\"Incorrect platform: {self.fields['platform']}\\n\"\n                f\"--platform must be one of the following: \\n\"\n                f\"OXFORD_NANOPORE, ILLUMINA, ION_TORRENT, \\n\"\n                f\"CAPILLARY, PACBIO_SMRT, ABI_SOLID, \\n\"\n                f\"BGISEQ, LS454, COMPLETE_GENOMICS, HELICOS\\n\\n\"\n            )\n            output = self._input_multi_regex_checker(\n                platform_matcher, self.fields[\"platform\"], error_message\n            )\n            if output[1]:\n                message += output[1]\n            else:\n                self.fields[\"platform\"] = output[0]\n        # verify selection\n        selection_matcher = {\n            \".*methylcytidine.*\": \"5-methylcytidine antibody\",\n            \".*cage.*\": \"CAGE\",\n            r\".*chip\\s*$\": \"ChIP\",\n            \".*chip.*seq.*\": \"ChIP-Seq\",\n            \".*dnase.*\": \"DNase\",\n            \".*hmpr.*\": \"HMPR\",\n            \".*hybrid.*\": \"Hybrid Selection\",\n            r\".*inverse.*rrna\\s*$\": \"Inverse rRNA\",\n            \".*inverse.*rrna.*selection.*\": \"Inverse rRNA selection\",\n            \".*mbd2.*protein.*methyl.*cpg.*binding.*domain.*\": \"MBD2 protein methyl-CpG binding domain\",\n            \".*mda.*\": \"MDA\",\n            \".*mf.*\": \"MF\",\n            \".*mnase.*\": \"MNase\",\n            \".*msll.*\": \"MSLL\",\n            r\"^\\s*oligo.*dt.*\": \"Oligo-dT\",\n            r\"^\\s*pcr\\s*$\": \"PCR\",\n            \".*poly[ -_]*a.*\": \"PolyA\",\n            \".*race.*\": \"RACE\",\n            r\".*random\\s*$\": \"RANDOM\",\n            \".*random.*pcr.*\": \"RANDOM PCR\",\n            \".*rt[ -_]*pcr.*\": \"RT-PCR\",\n            \".*reduced.*representation.*\": \"Reduced Representation\",\n            \".*restriction.*digest.*\": \"Restriction Digest\",\n            r\".*cdna\\s*$\": \"cDNA\",\n            \".*cdna.*oligo.*dt\": \"cDNA_oligo_dT.*\",  # ENA only\n            \".*cdna.*random.*priming\": \"cDNA_randomPriming.*\",  # ENA only\n            \".*other.*\": \"other\",\n            \".*padlock.*probes.*capture.*method.*\": \"padlock probes capture method\",\n            \".*repeat.*fractionation.*\": \"repeat fractionation\",\n            \".*size.*fractionation.*\": \"size fractionation\",\n            \".*unspecified.*\": \"unspecified\",\n        }\n        if self.fields[\"selection\"]:\n            error_message = (\n                f\"Incorrect selection: {self.fields['selection']}\\n\"\n                f\"--selection must be one of the following: \\n\"\n                f\"5-methylcytidine antibody, CAGE, ChIP, ChIP-Seq, DNase, HMPR, Hybrid Selection,  \\n\"\n                f\"Inverse rRNA, Inverse rRNA selection, MBD2 protein methyl-CpG binding domain, \\n\"\n                f\"MDA, MF, MNase, MSLL, Oligo-dT, PCR, PolyA, RACE, RANDOM, RANDOM PCR, RT-PCR,  \\n\"\n                f\"Reduced Representation, Restriction Digest, cDNA, cDNA_oligo_dT, cDNA_randomPriming \\n\"\n                f\"other, padlock probes capture method, repeat fractionation, size fractionation, \\n\"\n                f\"unspecified\\n\\n\"\n            )\n            output = self._input_multi_regex_checker(\n                selection_matcher, self.fields[\"selection\"], error_message\n            )\n            if output[1]:\n                message += output[1]\n            else:\n                self.fields[\"selection\"] = output[0]\n        # verify source\n        source_matcher = {\n            r\"^\\s*genomic\\s*$\": \"GENOMIC\",\n            \".*genomic.*single.*cell.*\": \"GENOMIC SINGLE CELL\",\n            \".*metagenomic.*\": \"METAGENOMIC\",\n            \".*metatranscriptomic.*\": \"METATRANSCRIPTOMIC\",\n            \".*other.*\": \"OTHER\",\n            \".*synthetic.*\": \"SYNTHETIC\",\n            r\"^\\s*transcriptomic\\s*$\": \"TRANSCRIPTOMIC\",\n            \".*transcriptomic.*single.*cell.*\": \"TRANSCRIPTOMIC SINGLE CELL\",\n            \".*viral.*rna.*\": \"VIRAL RNA\",\n        }\n        if self.fields[\"source\"]:\n            error_message = (\n                f\"Incorrect source: {self.fields['source']}\\n\"\n                f\"--source must be one of the following: \\n\"\n                f\"GENOMIC, GENOMIC SINGLE CELL, METAGENOMIC,  \\n\"\n                f\"METATRANSCRIPTOMIC, OTHER, SYNTHETIC, \\n\"\n                f\"TRANSCRIPTOMIC, TRANSCRIPTOMIC SINGLE CELL, VIRAL RNA\\n\\n\"\n            )\n            output = self._input_multi_regex_checker(\n                source_matcher, self.fields[\"source\"], error_message\n            )\n            if output[1]:\n                message += output[1]\n            else:\n                self.fields[\"source\"] = output[0]\n        # verify strategy\n        strategy_matcher = {\n            \".*amplicon.*\": \"AMPLICON\",\n            \".*atac.*\": \"ATAC-seq\",\n            \".*bisulfite.*\": \"Bisulfite-Seq\",\n            r\"^\\s*clone\\s*$\": \"CLONE\",\n            \".*cloneend.*\": \"CLONEEND\",\n            \".*cts.*\": \"CTS\",\n            \".*chia.*|.*pet.*\": \"ChIA-PET\",\n            \".*chip.*seq.*\": \"ChIP-Seq\",\n            \".*dnase.*|.*hypersensitivity.*\": \"DNase-Hypersensitivity\",\n            r\"^\\s*est\\s*$\": \"EST\",\n            \".*faire.*\": \"FAIRE-seq\",\n            \".*finishing.*\": \"FINISHING\",\n            \".*fl.*cdna.*\": \"FL-cDNA\",\n            \".*hi.*c.*\": \"Hi-C\",\n            \".*mbd.*\": \"MBD-Seq\",\n            \".*mnase.*\": \"MNase-Seq\",\n            \".*mre.*\": \"MRE-Seq\",\n            \".*medip.*\": \"MeDIP-Seq\",\n            \".*other.*\": \"OTHER\",\n            \".*poolclone.*\": \"POOLCLONE\",\n            \".*rad.*\": \"RAD-Seq\",\n            \".*rip.*\": \"RIP-Seq\",\n            r\"^\\s*rna.*seq\": \"RNA-Seq\",\n            \".*selex.*\": \"SELEX\",\n            \".*synthetic.*|.*long.*read.*\": \"Synthetic-Long-Read\",\n            \".*targeted.*capture.*\": \"Targeted-Capture\",\n            \".*tethered.*chromatin.*conformation.*capture.*|.*tccc.*\": \"Tethered Chromatin Conformation Capture\",\n            \".*tn.*\": \"Tn-Seq\",\n            \".*validation.*\": \"VALIDATION\",\n            \".*wcs.*\": \"WCS\",\n            \".*wga.*\": \"WGA\",\n            \".*wgs.*\": \"WGS\",\n            \".*wxs.*\": \"WXS\",\n            \".*mirna.*\": \"miRNA-Seq\",\n            \".*ncrna.*\": \"ncRNA-Seq\",\n            \".*ssrna.*\": \"ssRNA-seq\",\n            \".*gbs.*\": \"GBS\",\n        }\n        if self.fields[\"strategy\"]:\n            error_message = (\n                f\"Incorrect strategy: {self.fields['strategy']}\\n\"\n                f\"--strategy must be one of the following: \\n\"\n                f\"AMPLICON, ATAC-seq, Bisulfite-Seq, CLONE, CLONEEND, CTS, ChIA-PET, ChIP-Seq, \\n\"\n                f\"DNase-Hypersensitivity, EST, FAIRE-seq, FINISHING, FL-cDNA, Hi-C, MBD-Seq, MNase-Seq,\\n\"\n                f\"MRE-Seq, MeDIP-Seq, OTHER, POOLCLONE, RAD-Seq, RIP-Seq, RNA-Seq, SELEX, \\n\"\n                f\"Synthetic-Long-Read, Targeted-Capture, Tethered Chromatin Conformation Capture, \\n\"\n                f\"Tn-Seq, VALIDATION, WCS, WGA, WGS, WXS, miRNA-Seq, ncRNA-Seq, ssRNA-seq, GBS\\n\\n\"\n            )\n            output = self._input_multi_regex_checker(\n                strategy_matcher, self.fields[\"strategy\"], error_message\n            )\n            if output[1]:\n                message += output[1]\n            else:\n                self.fields[\"strategy\"] = output[0]\n        if message:\n            raise IncorrectFieldException(message)\n\n    def _list_stat(self, stat_header):\n        stat = self.stats[stat_header]\n        if type(stat) != dict:\n            return f\"  {stat_header}: {stat}\\n\"\n        keys = sorted(stat.keys())\n        stat_breakdown = \"\\n\"\n        for key in keys:\n            stat_breakdown += f\"\\t  {key}:  {stat[key]}\\n\"\n        return f\"  {stat_header}: {stat_breakdown}\\n\"\n\n    def show_result_statistics(self):\n        \"\"\"Shows search result statistics.\"\"\"\n        if self.df.empty:\n            print(\n                \"No results are found for the current search query, hence no statistics can be generated.\"\n            )\n            return\n        stats = (\n            \"\\n  Statistics for the search query:\\n\"\n            + \"  =================================\\n\"\n            + f\"  Number of unique studies: {self.stats['study']}\\n\"\n            + f\"  Number of unique experiments: {self.stats['experiment']}\\n\"\n            + f\"  Number of unique runs: {self.stats['run']}\\n\"\n            + f\"  Number of unique samples: {self.stats['sample']}\\n\"\n            + f\"  Mean base count of samples: {self.stats['count_mean']:.3f}\\n\"\n            + f\"  Median base count of samples: {self.stats['count_median']:.3f}\\n\"\n            + f\"  Sample base count standard deviation: {self.stats['count_stdev']:.3f}\\n\"\n        )\n\n        # Statistics with categorical breakdowns:\n        categorical_stats = (\n            \"Date range\",\n            \"Organisms\",\n            \"Platform\",\n            \"Library strategy\",\n            \"Library source\",\n            \"Library selection\",\n            \"Library layout\",\n        )\n        for categorical_stat in categorical_stats:\n            stats += self._list_stat(categorical_stat)\n        print(stats)\n\n    def visualise_results(\n        self, graph_types=(\"all\",), show=False, saveto=\"./search_plots/\"\n    ):\n        \"\"\"Generate graphs that visualise the search results.\n\n        This method will only work if the optional dependency, matplotlib,\n        is installed in the system.\n\n        Parameters\n        ----------\n        graph_types : tuple\n            tuple containing strings representing types of graphs to\n            generate.\n            Possible strings: all, daterange, organism, source, selection, platform,\n            basecount\n        saveto : str\n            directory name where the generated graphs are saved.\n\n        show : bool\n            Whether plotted graphs are immediately shown.\n        \"\"\"\n        if self.df.empty:\n            print(\n                \"No results are found for the current search query, hence no graphs can be generated.\"\n            )\n            return\n        try:\n            import matplotlib.pyplot as plt\n        except ImportError:\n            print(\n                \"The optional dependency, matplotlib, is not available on the system.\\n\"\n                \"matplotlib is required to generate graphs to visualise search results.\\n\"\n                'You can install matplotlib by typing \"pip install matplotlib\" on the command line.\\n'\n            )\n            return\n        plt.rcParams[\"figure.autolayout\"] = True\n        if not os.path.isdir(saveto):\n            os.mkdir(saveto)\n        plots = [\n            (\"Base Count\",),\n            (\"Publication Date\",),\n            (\"Organism\",),\n            (\"Library Source\",),\n            (\"Library Selection\",),\n            (\"Platform\",),\n            (\"Organism\", \"Publication Date\"),\n            (\"Library Source\", \"Publication Date\"),\n            (\"Library Selection\", \"Publication Date\"),\n            (\"Platform\", \"Publication Date\"),\n            (\"Library Source\", \"Organism\"),\n            (\"Library Selection\", \"Organism\"),\n            (\"Platform\", \"Organism\"),\n            (\"Library Selection\", \"Library Source\"),\n            (\"Platform\", \"Library Source\"),\n            (\"Platform\", \"Library Selection\"),\n        ]\n        plot_keys = {\n            \"daterange\": \"Publication Date\",\n            \"organism\": \"Organism\",\n            \"source\": \"Library Source\",\n            \"selection\": \"Library Selection\",\n            \"platform\": \"Platform\",\n            \"basecount\": \"Base Count\",\n        }\n        if \"all\" not in graph_types:\n            selected_plots = []\n            for graph_type in graph_types:\n                if graph_type not in plot_keys:\n                    continue\n                for plot in plots:\n                    if plot_keys[graph_type] in plot and plot not in selected_plots:\n                        selected_plots.append(plot)\n            plots = selected_plots\n        too_many_organisms = False\n        if self.stats[\"graph_raw\"][\"Organism\"].nunique() > 30:\n            print(\n                \"Too many types of organisms to plot (>30). Showing only top 30 organisms.\"\n            )\n            too_many_organisms = True\n        for plot in plots:\n            self._plot_graph(plt, plot, show, saveto, too_many_organisms)\n\n    def search(self):\n        pass\n\n    def get_df(self):\n        \"\"\"Getter for the search result dataframe.\"\"\"\n        return self.df\n\n    def get_plot_objects(self):\n        \"\"\"Get the plot objects for plots generated.\"\"\"\n        return self.plot_objects\n\n    def _plot_graph(self, plt, axes, show, savedir, too_many_organisms):\n        \"\"\"Plots a graph based on data from self.stats\n\n        Parameters\n        ----------\n        axes: tuple\n            tuple containing 1 or 2 strings corresponding to the statistics\n            to plot. 1 string: Histogram. 2 string: heat map\n        savedir: str\n            directory to save to\n        show: bool\n            whether to call plt.show\n        \"\"\"\n        timestamp = time.strftime(\"%Y-%m-%d %H-%M-%S\")\n        if (\n            \"Publication Date\" in axes\n            and self.stats[\"graph_raw\"][\"Publication Date\"].nunique() > 30\n        ):\n            self.stats[\"graph_raw\"][\"Publication Date\"] = self.stats[\"graph_raw\"][\n                \"Publication Date\"\n            ].str[:-3]\n        if axes == (\"Base Count\",):\n            count = list(self.stats[\"count_data\"])\n            if len(count) == 0:\n                return\n            title = \"Histogram of Base Count\"\n            plt.figure(figsize=(15, 10))\n            plt.hist(count, min(70, len(count)), color=\"#135c1c\", log=True)\n            plt.xlabel(\"Base Count\", fontsize=14)\n            plt.ylabel(\"Frequency\", fontsize=14)\n            plt.xticks(rotation=90)\n            plt.title(title, fontsize=18)\n            plt.savefig(f\"{savedir}{title} {timestamp}.svg\")\n            self.plot_objects[axes] = plt\n        elif len(axes) == 1:\n            title = f\"Histogram of {axes[0]}\"\n            data = self.stats[\"graph_raw\"][axes[0]].value_counts()\n            if too_many_organisms:\n                data = data[:30]\n            plt.figure(figsize=(15, 10))\n            plt.bar(\n                range(len(data.values)),\n                data.values,\n                tick_label=list(data.index),\n                color=\"#135c1c\",\n            )\n            plt.xticks(rotation=90)\n            plt.title(title, fontsize=18)\n            plt.xlabel(axes[0], fontsize=14)\n            plt.ylabel(\"Frequency\", fontsize=14)\n            plt.savefig(f\"{savedir}{title} {timestamp}.svg\")\n            self.plot_objects[axes] = plt\n        elif len(axes) == 2:\n            title = f\"Heatmap of {axes[0]} against {axes[1]}\"\n            df = self.stats[\"graph_raw\"][list(axes)]\n            a = df.groupby([axes[0]]).agg({i: \"value_counts\" for i in df.columns[1:]})\n            a = a.rename(columns={axes[1]: f\"{axes[1]}_count\"})\n            b = a.reset_index(level=list(axes))\n            piv = (\n                pd.pivot_table(\n                    b,\n                    values=f\"{axes[1]}_count\",\n                    index=[axes[0]],\n                    columns=[axes[1]],\n                    fill_value=0,\n                    aggfunc=\"sum\",\n                    margins=True,\n                )\n                .sort_values(\"All\", ascending=False)\n                .drop(\"All\", axis=1)\n                .sort_values(\"All\", ascending=False, axis=1)\n                .drop(\"All\")\n            )\n            if too_many_organisms:\n                if axes[0] == \"Organism\":\n                    piv = piv[:30]\n                else:\n                    piv = piv.iloc[:, :30]\n            fig, ax = plt.subplots(figsize=(15, 12))\n            im = ax.imshow(piv, cmap=\"Greens\")\n            fig.colorbar(im, ax=ax)\n            ax.set_title(title, fontsize=18)\n            ax.set_xticks(range(len(piv.columns)))\n            ax.set_yticks(range(len(piv.index)))\n            ax.set_xticklabels(piv.columns, rotation=90)\n            ax.set_yticklabels(piv.index)\n            ax.set_ylabel(axes[0], fontsize=14)\n            ax.set_xlabel(axes[1], fontsize=14)\n            ax.get_figure().savefig(f\"{savedir}{title} {timestamp}.svg\")\n            self.plot_objects[axes] = (fig, ax)\n        if show:\n            plt.show()\n\n\nclass SraSearch(QuerySearch):\n    \"\"\"Subclass of QuerySearch that implements search by querying\n    NCBI Entrez API\n\n    Methods\n    -------\n    search()\n        sends the user query via requests to NCBI Entrez API and returns\n        search results as a pandas dataframe.\n\n    show_result_statistics()\n        Shows summary information about search results.\n\n    visualise_results()\n        Generate graphs that visualise the search results.\n\n    get_plot_objects():\n        Get the plot objects for plots generated.\n\n    get_uids():\n        Get NCBI uids retrieved during this search query.\n\n    _format_query_string()\n        formats the input user query into a string\n\n    _format_request()\n        formats the request payload\n\n    _format_result(content)\n        formats the search query output.\n\n    See Also\n    --------\n    QuerySearch: Superclass of SraSearch\n\n    \"\"\"\n\n    def __init__(\n        self,\n        verbosity=2,\n        return_max=20,\n        query=None,\n        accession=None,\n        organism=None,\n        layout=None,\n        mbases=None,\n        publication_date=None,\n        platform=None,\n        selection=None,\n        source=None,\n        strategy=None,\n        title=None,\n        suppress_validation=False,\n    ):\n        super().__init__(\n            verbosity,\n            return_max,\n            query,\n            accession,\n            organism,\n            layout,\n            mbases,\n            publication_date,\n            platform,\n            selection,\n            source,\n            strategy,\n            title,\n            suppress_validation,\n        )\n        self.entries = {}\n        self.number_entries = 0\n        self.uids = []\n\n    def search(self):\n        # Step 1: retrieves the list of uids that satisfies the input\n        # search query\n        payload = self._format_request()\n        try:\n            r = requests_3_retries().get(\n                \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\",\n                params=payload,\n                timeout=SEARCH_REQUEST_TIMEOUT,\n            )\n            r.raise_for_status()\n            self.uids = r.json()[\"esearchresult\"][\"idlist\"]\n\n            # Step 2: retrieves the detailed information for each uid\n            # returned, in groups of SRA_SEARCH_GROUP_SIZE.\n            if not self.uids:\n                print(\n                    f\"No results found for the following search query: \\n {self.fields}\"\n                )\n                return  # If no queries found, return nothing\n            pbar = tqdm(total=len(self.uids))\n            for i in range(0, len(self.uids), SRA_SEARCH_GROUP_SIZE):\n                current_uids = \",\".join(\n                    self.uids[i : min(i + SRA_SEARCH_GROUP_SIZE, len(self.uids))]\n                )\n                pbar.update(min(SRA_SEARCH_GROUP_SIZE, len(self.uids) - i))\n                payload2 = {\"db\": \"sra\", \"retmode\": \"xml\", \"id\": current_uids}\n\n                r = requests_3_retries().get(\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi\",\n                    params=payload2,\n                    timeout=SEARCH_REQUEST_TIMEOUT,\n                    stream=True,\n                )\n                r.raise_for_status()\n                r.raw.decode_content = True\n                self._format_response(r.raw)\n            pbar.close()\n            self._format_result()\n\n        except requests.exceptions.Timeout:\n            sys.exit(f\"Connection to the server has timed out. Please retry.\")\n        except requests.exceptions.HTTPError:\n            sys.exit(\n                f\"HTTPError: This is likely caused by an invalid search query: \"\n                f\"\\nURL queried: {r.url} \\nUser query: {self.fields}\"\n            )\n\n    def get_uids(self):\n        \"\"\"Get NCBI uids retrieved during this search query.\n\n        Note: There is a chance that some uids retrieved do not appear in\n        the search result output (Refer to #88)\n        \"\"\"\n        return self.uids\n\n    def _format_query_string(self):\n        term = \"\"\n        if self.fields[\"query\"]:\n            term += self.fields[\"query\"] + \" AND \"\n        if self.fields[\"accession\"]:\n            term += self.fields[\"accession\"] + \"[Accession] AND \"\n        if self.fields[\"organism\"]:\n            term += self.fields[\"organism\"] + \"[Organism] AND \"\n        if self.fields[\"layout\"]:\n            term += self.fields[\"layout\"] + \"[Layout] AND \"\n        if self.fields[\"mbases\"]:\n            term += str(self.fields[\"mbases\"]) + \"[Mbases] AND \"\n        if self.fields[\"publication_date\"]:\n            dates = []\n            for date in self.fields[\"publication_date\"].split(\":\"):\n                dates.append(\"/\".join(date.split(\"-\")[::-1]))\n            term += \":\".join(dates) + \"[PDAT] AND \"\n        if self.fields[\"platform\"]:\n            term += self.fields[\"platform\"] + \"[Platform] AND \"\n        if self.fields[\"selection\"]:\n            term += self.fields[\"selection\"] + \"[Selection] AND \"\n        if self.fields[\"source\"]:\n            term += self.fields[\"source\"] + \"[Source] AND \"\n        if self.fields[\"strategy\"]:\n            term += self.fields[\"strategy\"] + \"[Strategy] AND \"\n        if self.fields[\"title\"]:\n            term += self.fields[\"title\"] + \"[Title] AND \"\n        return term[:-5]  # Removing trailing \" AND \"\n\n    def _format_request(self):\n        payload = {\n            \"db\": \"sra\",\n            \"term\": self._format_query_string(),\n            \"retmode\": \"json\",\n            \"retmax\": self.return_max,\n        }\n        return payload\n\n    def _format_response(self, content):\n        field_categories = [\n            \"EXPERIMENT\",\n            \"SUBMISSION\",\n            \"ORGANISATION\",\n            \"STUDY\",\n            \"SAMPLE\",\n            \"Pool\",\n            \"RUN_SET\",\n        ]\n        for event, elem in Et.iterparse(content):\n            if elem.tag == \"EXPERIMENT_PACKAGE\":\n                self.number_entries += 1\n            elif elem.tag in field_categories:\n                self._parse_entry(elem)\n        for field in self.entries:\n            if len(self.entries[field]) < self.number_entries:\n                self.entries[field] += [\"\"] * (\n                    self.number_entries - len(self.entries[field])\n                )\n\n    def _format_result(self):\n        self.df = pd.DataFrame.from_dict(self.entries).replace(\n            r\"^\\s*$\", pd.NA, regex=True\n        )\n        self.entries.clear()\n        if self.df.empty:\n            return\n        # Tabulate statistics\n        self._update_stats()\n\n        columns = list(self.df.columns)\n        important_columns = [\n            \"study_accession\",\n            \"experiment_accession\",\n            \"experiment_title\",\n            \"design_description\",\n            \"sample_taxon_id\",\n            \"sample_scientific_name\",\n            \"experiment_library_strategy\",\n            \"experiment_library_source\",\n            \"experiment_library_selection\",\n            \"sample_accession\",\n            \"sample_alias\",\n            \"experiment_instrument_model\",\n            \"pool_member_spots\",\n            \"run_1_size\",\n            \"run_1_accession\",\n            \"run_1_total_spots\",\n            \"run_1_total_bases\",\n        ]\n        temp_cols = []\n        for col in important_columns:\n            if col in columns:\n                temp_cols.append(col)\n                columns.remove(col)\n        important_columns = temp_cols\n        if self.verbosity <= 1:\n            temp_dfs = []\n            for col in self.df.columns:\n                if re.match(\"run_[0-9]+_accession\", col):\n                    temp_df = self.df[[col, \"experiment_title\"]]\n                    temp_df = temp_df[~pd.isna(temp_df[col])].rename(\n                        columns={\n                            col: \"run_accession\",\n                            \"experiment_title\": \"experiment_title\",\n                        }\n                    )\n                    temp_dfs.append(temp_df)\n            run_dataframe = pd.concat(temp_dfs)\n            run_dataframe.sort_values(by=[\"run_accession\"], kind=\"mergesort\")\n            self.df = run_dataframe\n        if self.verbosity == 0:\n            self.df = self.df[[\"run_accession\"]]\n        elif self.verbosity == 1:\n            pass  # df has already been formatted above\n        elif self.verbosity == 2:\n            self.df = self.df[important_columns]\n        elif self.verbosity == 3:\n            self.df = self.df[important_columns + sorted(columns)]\n        self.df.dropna(how=\"all\")\n\n    def _parse_entry(self, entry_root):\n        \"\"\"Parses a subset of the XML tree from request stream\n\n        Parameters\n        ----------\n        entry_root: ElementTree.Element\n            root element of the xml tree from requests stream\n        \"\"\"\n        field_header = entry_root.tag.lower()\n        run_count = 0\n\n        # root element attributes\n        for k, v in entry_root.attrib.items():\n            self._update_entry(f\"{field_header}_{k}\".lower(), v)\n        for child in entry_root:\n            # \"*_REF\" tags contain duplicate information that can be found\n            # somewhere in the xml entry and are skipped\n            if child.tag.endswith(\"_REF\"):\n                continue\n            # IDENTIFIERS contain two types of children tags:\n            # PRIMARY_ID, which repeats the accession number and\n            # EXTERNAL_ID tags, each containing an alternative ID that is\n            # typically used in another database (GEO, ENA etc)\n            # IDs are numbered from 1 to differentiate between them.\n            elif child.tag == \"IDENTIFIERS\":\n                id_index = 1\n                for identifier in child:\n                    if identifier.tag == \"EXTERNAL_ID\":\n                        self._update_entry(\n                            f\"{field_header}_external_id_{id_index}\",\n                            identifier.text,\n                        )\n                        self._update_entry(\n                            f\"{field_header}_external_id_{id_index}_namespace\",\n                            identifier.get(\"namespace\"),\n                        )\n            # \"*_LINKS\" tags contain 0 or more \"*_LINK\" children tags,\n            # each containing information (values) regarding the link\n            # Links are numbered from 1 to differentiate between multiple\n            # links.\n            elif child.tag.endswith(\"_LINKS\"):\n                link_index = 1\n                for link in child:\n                    # Link type. Eg: URL_link, Xref_link\n                    self._update_entry(\n                        f\"{link.tag}_{link_index}_type\".lower(),\n                        link[0].tag,\n                    )\n                    # Link values in the form of tag: value.\n                    # Eg: label: GEO sample\n                    link_value_index = 1\n                    for link_value in link[0]:\n                        self._update_entry(\n                            f\"{link.tag}_{link_index}_value_{link_value_index}\".lower(),\n                            f\"{link_value.tag}: {link_value.text}\",\n                        )\n                        link_value_index += 1\n                    link_index += 1\n            # \"*_ATTRIBUTES\" tags contain tag - value pairs providing\n            # additional information for the Experiment/Sample/Study\n            # Attributes are numbered from 1 to differentiate between\n            # multiple attributes.\n            elif child.tag.endswith(\"_ATTRIBUTES\"):\n                attribute_index = 1\n                for attribute in child:\n                    for val in attribute:\n                        self._update_entry(\n                            f\"{child.tag}_{attribute_index}_{val.tag}\".lower(),\n                            val.text,\n                        )\n                    attribute_index += 1\n            # Differentiating between sample title and experiment title.\n            elif child.tag == \"TITLE\":\n                self._update_entry(f\"{field_header}_title\", child.text)\n            # Parsing platfrom information\n            elif child.tag == \"PLATFORM\":\n                platform = child[0]\n                self._update_entry(\"experiment_platform\", platform.tag)\n                self._update_entry(\n                    \"experiment_instrument_model\",\n                    platform[0].text,\n                )\n            # Parsing individual run information\n            elif child.tag == \"RUN\":\n                run_count += 1\n                # run attributes\n                for k, v in child.attrib.items():\n                    self._update_entry(f\"run_{run_count}_{k}\".lower(), v)\n                for elem in child:\n                    if elem.tag == \"SRAFiles\":\n                        srafile_index = 1\n                        for srafile in elem:\n                            for k, v in srafile.attrib.items():\n                                self._update_entry(\n                                    f\"run_{run_count}_srafile_{srafile_index}_{k}\".lower(),\n                                    v,\n                                )\n                            alternatives_index = 1\n                            for alternatives in srafile:\n                                for k, v in alternatives.attrib.items():\n                                    self._update_entry(\n                                        f\"run_{run_count}_srafile_{srafile_index}_alternative_{alternatives_index}_{k}\".lower(),\n                                        v,\n                                    )\n                                alternatives_index += 1\n                            srafile_index += 1\n                    elif elem.tag == \"CloudFiles\":\n                        cloudfile_index = 1\n                        for cloudfile in elem:\n                            for k, v in cloudfile.attrib.items():\n                                self._update_entry(\n                                    f\"run_{run_count}_cloudfile_{cloudfile_index}_{k}\".lower(),\n                                    v,\n                                )\n                            cloudfile_index += 1\n                    elif elem.tag == \"Bases\":\n                        for k, v in elem.attrib.items():\n                            self._update_entry(\n                                f\"run_{run_count}_total_base_{k}\".lower(),\n                                v,\n                            )\n                        for base in elem:\n                            self._update_entry(\n                                f\"run_{run_count}_base_{base.attrib['value']}_count\",\n                                base.attrib[\"count\"],\n                            )\n                    elif elem.tag == \"Databases\":\n                        database_index = 1\n                        for database in elem:\n                            self._update_entry(\n                                f\"run_{run_count}_database_{database_index}\".lower(),\n                                Et.tostring(database).decode(),\n                            )\n                            database_index += 1\n            else:\n                for elem in child.iter():\n                    # Tags to ignore to avoid confusion\n                    if elem.tag in [\"PRIMARY_ID\", \"SINGLE\", \"PAIRED\"]:\n                        continue\n                    elif elem.text:\n                        self._update_entry(\n                            f\"{field_header}_{elem.tag.lower()}\",\n                            elem.text,\n                        )\n                    elif elem.attrib:\n                        for k, v in elem.attrib.items():\n                            self._update_entry(\n                                f\"{field_header}_{elem.tag}_{k}\".lower(),\n                                v,\n                            )\n            # Parsing library layout (single, paired)\n            if field_header == \"experiment\":\n                library_layout = child.find(\"./LIBRARY_DESCRIPTOR/LIBRARY_LAYOUT\")\n                if library_layout:\n                    library_layout = library_layout[0]\n                    self._update_entry(f\"library_layout\", library_layout.tag)\n                    # If library layout is paired, information such as nominal\n                    # standard deviation and length, etc are provided as well.\n                    if library_layout.tag == \"PAIRED\":\n                        for k, v in library_layout.attrib.items():\n                            self._update_entry(\n                                f\"library_layout_{k}\".lower(),\n                                v,\n                            )\n\n    def _update_entry(self, field_name, field_content):\n        \"\"\"Adds information from a field into the entries dictionary\n\n        This is a helper function that adds information parsed from the XML\n        output from SRA into a dictionary of lists, for easier conversion\n        into a Pandas dataframe later. Dictionary key is created if it\n        doesn't exist yet. For entries that does not have information\n        belonging to a field, the corresponding list will be padded with\n        empty strings.\n\n        Parameters\n        ----------\n        field_name: str\n            Name of the field where a value belonging to an entry is to be\n            added\n        field_content: str\n            Value to be added\n        \"\"\"\n        if field_name not in self.entries:\n            self.entries[field_name] = []\n        if len(self.entries[field_name]) > self.number_entries:\n            return\n        self.entries[field_name] += [\"\"] * (\n            self.number_entries - len(self.entries[field_name])\n        ) + [field_content]\n\n    def _update_stats(self):\n        # study\n        self.stats[\"study\"] = self.df[\"study_accession\"].nunique()\n        # experiment\n        self.stats[\"experiment\"] = self.df[\"experiment_accession\"].nunique()\n        # run\n        runs = self._merge_selected_columns(r\"^run.*accession$\")\n        if not runs.empty:\n            self.stats[\"run\"] = runs.nunique()\n        # sample\n        samples = self._merge_selected_columns(r\"^sample.*accession$\")\n        if not samples.empty:\n            self.stats[\"sample\"] = samples.nunique()\n        # date range\n        daterange = self._merge_selected_columns(r\"^run_1_published$\")\n        if not daterange.empty:\n            dates = pd.to_datetime(daterange).dt.to_period(\"M\").astype(str)\n            self.stats[\"Date range\"] = dates.value_counts().to_dict()\n        # organisms\n        organisms = self._merge_selected_columns(r\"^sample.*scientific_name.*\")\n        if not organisms.empty:\n            self.stats[\"Organisms\"] = organisms.value_counts().to_dict()\n        # strategy\n        if \"experiment_library_strategy\" in self.df.columns:\n            self.stats[\"Library strategy\"] = (\n                self.df[\"experiment_library_strategy\"].value_counts().to_dict()\n            )\n        # source\n        if \"experiment_library_source\" in self.df.columns:\n            self.stats[\"Library source\"] = (\n                self.df[\"experiment_library_source\"].value_counts().to_dict()\n            )\n        # selection\n        if \"experiment_library_selection\" in self.df.columns:\n            self.stats[\"Library selection\"] = (\n                self.df[\"experiment_library_selection\"].value_counts().to_dict()\n            )\n        # layout\n        if \"library_layout\" in self.df.columns:\n            self.stats[\"Library layout\"] = (\n                self.df[\"library_layout\"].value_counts().to_dict()\n            )\n        # platform\n        if \"experiment_platform\" in self.df.columns:\n            self.stats[\"Platform\"] = (\n                self.df[\"experiment_platform\"].value_counts().to_dict()\n            )\n        # count\n        count = self._merge_selected_columns(r\"^run_.*_total_bases$\").astype(\"int64\")\n        self.stats[\"count_data\"] = count\n        self.stats[\"count_mean\"] = count.mean()\n        self.stats[\"count_median\"] = count.median()\n        self.stats[\"count_stdev\"] = count.std()\n\n        # for graphing\n        self.stats[\"graph_raw\"] = self.df[\n            [\n                \"sample_scientific_name\",\n                \"experiment_library_strategy\",\n                \"experiment_library_source\",\n                \"experiment_library_selection\",\n                \"run_1_published\",\n                \"experiment_platform\",\n            ]\n        ].rename(\n            columns={\n                \"sample_scientific_name\": \"Organism\",\n                \"experiment_library_strategy\": \"Library Strategy\",\n                \"experiment_library_source\": \"Library Source\",\n                \"experiment_library_selection\": \"Library Selection\",\n                \"run_1_published\": \"Publication Date\",\n                \"experiment_platform\": \"Platform\",\n            }\n        )\n        self.stats[\"graph_raw\"][\"Publication Date\"] = (\n            pd.to_datetime(\n                self.stats[\"graph_raw\"][\"Publication Date\"].replace(pd.NA, None)\n            )\n            .dt.to_period(\"M\")\n            .astype(str)\n        )\n\n    def _merge_selected_columns(self, regex):\n        columns = list(self.df.filter(regex=regex, axis=1).columns)\n        if not columns:\n            series = pd.Series(dtype=\"object\")\n        elif len(columns) == 1:\n            series = self.df[columns[0]]\n        else:\n            series = self.df[columns[0]]\n            for c in columns[1:]:\n                series = pd.concat([series, self.df[c]])\n        return series[~pd.isna(series)]\n\n\nclass EnaSearch(QuerySearch):\n    \"\"\"Subclass of QuerySearch that implements search via querying ENA API\n\n\n    Methods\n    -------\n    search()\n        sends the user query via requests to ENA API and stores search\n        result as an instance attribute in the form of a pandas dataframe\n\n    show_result_statistics()\n        Shows summary information about search results.\n\n    visualise_results()\n        Generate graphs that visualise the search results.\n\n    get_plot_objects():\n        Get the plot objects for plots generated.\n\n    _format_query_string()\n        formats the input user query into a string\n\n    _format_request()\n        formats the request payload\n\n    _format_result(content)\n        formats the search query output and converts it into a pandas\n        dataframe\n\n    See Also\n    --------\n    QuerySearch: Superclass of EnaSearch\n\n    \"\"\"\n\n    def search(self):\n        # This ensures that the spaces in the query string are not\n        # converted to '+' by requests.\n        payload = urllib.parse.urlencode(\n            self._format_request(), quote_via=urllib.parse.quote\n        )\n        try:\n            r = requests_3_retries().get(\n                \"https://www.ebi.ac.uk/ena/portal/api/search\",\n                params=payload,\n                timeout=SEARCH_REQUEST_TIMEOUT,\n            )\n            r.raise_for_status()\n            self._format_result(r.json())\n        except requests.exceptions.Timeout:\n            sys.exit(f\"Connection to the server has timed out. Please retry.\")\n        except requests.exceptions.HTTPError:\n            sys.exit(\n                f\"HTTPError: This is likely caused by an invalid search query: \"\n                f\"\\nURL queried: {r.url} \\nUser query: {self.fields}\"\n            )\n        except JSONDecodeError:\n            print(f\"No results found for the following search query: \\n {self.fields}\")\n            return  # no results found\n\n    def _format_query_string(self):\n        term = \"\"\n        if self.fields[\"query\"]:\n            term += rf'(experiment_title=\"*{self.fields[\"query\"]}*\"'\n            if not self.fields[\"accession\"]:\n                self.fields[\"query\"] = self.fields[\"query\"].upper()\n                term += (\n                    rf' OR study_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'secondary_study_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'sample_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'secondary_sample_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'experiment_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'submission_accession=\"{self.fields[\"query\"]}\" OR '\n                    rf'run_accession=\"{self.fields[\"query\"]}\"'\n                )\n            term += \") AND \"\n        if self.fields[\"accession\"]:\n            self.fields[\"accession\"] = self.fields[\"accession\"].upper()\n            term += (\n                rf'(study_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'secondary_study_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'sample_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'secondary_sample_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'experiment_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'submission_accession=\"{self.fields[\"accession\"]}\" OR '\n                rf'run_accession=\"{self.fields[\"accession\"]}\") AND '\n            )\n        if self.fields[\"organism\"]:\n            term += rf'tax_eq({scientific_name_to_taxid(self.fields[\"organism\"])}) AND '\n        if self.fields[\"layout\"]:\n            term += rf'library_layout=\"{self.fields[\"layout\"].upper()}\" AND '\n        if self.fields[\"mbases\"]:\n            if type(self.fields[\"mbases\"]) != int:\n                raise IncorrectFieldException(\n                    f\"Incorrect mbases format: {self.fields['mbases']}\\n\"\n                    f\"--mbases must be an integer\"\n                )\n            upper_limit = self.fields[\"mbases\"] * 1000000 + 500000\n            lower_limit = self.fields[\"mbases\"] * 1000000 - 500000\n            term += rf\"base_count>={lower_limit} AND base_count<{upper_limit} AND \"\n        if self.fields[\"publication_date\"]:\n            dates = self.fields[\"publication_date\"].split(\":\")\n            for i in range(len(dates)):\n                dates[i] = \"-\".join(dates[i].split(\"-\")[::-1])\n            if len(dates) == 1:\n                term += rf\"first_created={dates[0]} AND \"\n            elif len(dates) == 2:\n                term += rf\"first_created>={dates[0]} AND first_created<={dates[1]} AND \"\n            else:\n                raise IncorrectFieldException(\n                    f\"Incorrect publication date format: {self.fields['publication_date']}\\n\"\n                    f\"Expected format: dd-mm-yyyy or dd-mm-yyyy:dd-mm-yyyy\"\n                )\n        if self.fields[\"platform\"]:\n            term += rf'instrument_platform=\"{self.fields[\"platform\"]}\" AND '\n        if self.fields[\"selection\"]:\n            term += rf'library_selection=\"{self.fields[\"selection\"]}\" AND '\n        if self.fields[\"source\"]:\n            term += rf'library_source=\"{self.fields[\"source\"]}\" AND '\n        if self.fields[\"strategy\"]:\n            term += rf'library_strategy=\"{self.fields[\"strategy\"]}\" AND '\n        if self.fields[\"title\"]:\n            term += rf'experiment_title=\"*{self.fields[\"title\"]}*\" AND '\n        return term[:-5]  # Removing trailing \" AND \"\n\n    def _format_request(self):\n        # Note: ENA's API does not support searching a query in all fields.\n        # Currently, if the user does not specify a query field, the query will\n        # be matched to experiment_title (aka description),\n        # or one of the accession fields\n        stats_columns = ()\n        payload = {\n            \"query\": self._format_query_string(),\n            \"result\": \"read_run\",\n            \"format\": \"json\",\n            \"limit\": self.return_max,\n        }\n\n        # Selects the fields to return at different verbosity levels\n        if self.verbosity < 3:\n            payload[\"fields\"] = (\n                \"study_accession,\"\n                \"experiment_accession,\"\n                \"experiment_title,\"\n                \"description,\"\n                \"tax_id,\"\n                \"scientific_name,\"\n                \"library_strategy,\"\n                \"library_source,\"\n                \"library_selection,\"\n                \"sample_accession,\"\n                \"sample_title,\"\n                \"instrument_model,\"\n                \"run_accession,\"\n                \"read_count,\"\n                \"base_count,\"\n                \"first_public,\"\n                \"library_layout,\"\n                \"instrument_platform\"\n            )\n        elif self.verbosity == 3:\n            payload[\"fields\"] = \"all\"\n        return payload\n\n    def _format_result(self, content):\n        if not content:\n            return\n        self.df = pd.DataFrame.from_dict(content).replace(r\"^\\s*$\", pd.NA, regex=True)\n\n        # Tabulate statistics\n        self._update_stats()\n\n        important_columns = [\n            \"study_accession\",\n            \"experiment_accession\",\n            \"experiment_title\",\n            \"description\",\n            \"tax_id\",\n            \"scientific_name\",\n            \"library_strategy\",\n            \"library_source\",\n            \"library_selection\",\n            \"sample_accession\",\n            \"sample_title\",\n            \"instrument_model\",\n            \"run_accession\",\n            \"read_count\",\n            \"base_count\",\n        ]\n\n        if self.verbosity == 0:\n            self.df = self.df[[\"run_accession\"]]\n        elif self.verbosity == 1:\n            self.df = self.df[[\"run_accession\", \"description\"]]\n        elif self.verbosity == 2:\n            self.df = self.df[important_columns]\n        elif self.verbosity == 3:\n            columns = list(self.df.columns)\n            columns = important_columns + sorted(\n                [col for col in columns if col not in important_columns]\n            )\n            self.df = self.df[columns]\n        self.df.dropna(how=\"all\")\n\n    def _update_stats(self):\n        # study\n        self.stats[\"study\"] = self.df[\"study_accession\"].nunique()\n        # experiment\n        self.stats[\"experiment\"] = self.df[\"experiment_accession\"].nunique()\n        # run\n        self.stats[\"run\"] = self.df[\"run_accession\"].nunique()\n        # sample\n        self.stats[\"sample\"] = self.df[\"sample_accession\"].nunique()\n        # date range\n        daterange = self.df[\"first_public\"]\n        daterange = daterange[~pd.isna(daterange)]\n        if not daterange.empty:\n            dates = pd.to_datetime(daterange).dt.to_period(\"M\").astype(str)\n            self.stats[\"Date range\"] = dates.value_counts().to_dict()\n        # organisms\n        organisms = self.df[\"scientific_name\"]\n        self.stats[\"Organisms\"] = organisms.value_counts().to_dict()\n        # strategy\n        if \"library_strategy\" in self.df.columns:\n            self.stats[\"Library strategy\"] = (\n                self.df[\"library_strategy\"].value_counts().to_dict()\n            )\n        # source\n        if \"library_source\" in self.df.columns:\n            self.stats[\"Library source\"] = (\n                self.df[\"library_source\"].value_counts().to_dict()\n            )\n        # selection\n        if \"library_selection\" in self.df.columns:\n            self.stats[\"Library selection\"] = (\n                self.df[\"library_selection\"].value_counts().to_dict()\n            )\n        # layout\n        if \"library_layout\" in self.df.columns:\n            self.stats[\"Library layout\"] = (\n                self.df[\"library_layout\"].value_counts().to_dict()\n            )\n        # platform\n        if \"instrument_platform\" in self.df.columns:\n            self.stats[\"Platform\"] = (\n                self.df[\"instrument_platform\"].value_counts().to_dict()\n            )\n        # count\n        count = self.df[\"base_count\"].copy()\n        count = count[~pd.isna(count)].astype(\"int64\")\n        self.stats[\"count_data\"] = count\n        self.stats[\"count_mean\"] = count.mean()\n        self.stats[\"count_median\"] = count.median()\n        self.stats[\"count_stdev\"] = count.std()\n\n        # For graphing\n        self.stats[\"graph_raw\"] = self.df[\n            [\n                \"scientific_name\",\n                \"library_strategy\",\n                \"library_source\",\n                \"library_selection\",\n                \"first_public\",\n                \"instrument_platform\",\n            ]\n        ].rename(\n            columns={\n                \"scientific_name\": \"Organism\",\n                \"library_strategy\": \"Library Strategy\",\n                \"library_source\": \"Library Source\",\n                \"library_selection\": \"Library Selection\",\n                \"first_public\": \"Publication Date\",\n                \"instrument_platform\": \"Platform\",\n            }\n        )\n        self.stats[\"graph_raw\"][\"Publication Date\"] = (\n            pd.to_datetime(self.stats[\"graph_raw\"][\"Publication Date\"])\n            .dt.to_period(\"M\")\n            .astype(str)\n        )\n\n\nclass GeoSearch(SraSearch):\n    \"\"\"Subclass of SraSearch that can query both GEO DataSets and SRA API.\n\n    Methods\n    -------\n    search()\n        sends the user query via requests to SRA, GEO DataSets, or both\n        depending on the search query. If query is sent to both APIs,\n        the intersection of the two sets of query results are returned.\n\n    show_result_statistics()\n        Shows summary information about search results.\n\n    visualise_results()\n        Generate graphs that visualise the search results.\n\n    get_plot_objects():\n        Get the plot objects for plots generated.\n\n    _format_geo_query_string()\n        formats the GEO DataSets portion of the input user query into a\n        string.\n\n    _format_geo_request()\n        formats the GEO DataSets request payload\n\n    _format_result(content)\n        formats the search query output and converts it into a pandas\n        dataframe\n\n    See Also\n    --------\n    GeoSearch.info: GeoSearch usage details\n    SraSearch: Superclass of GeoSearch\n    QuerySearch: Superclass of SraSearch\n\n    \"\"\"\n\n    def __init__(\n        self,\n        verbosity=2,\n        return_max=20,\n        query=None,\n        accession=None,\n        organism=None,\n        layout=None,\n        mbases=None,\n        publication_date=None,\n        platform=None,\n        selection=None,\n        source=None,\n        strategy=None,\n        title=None,\n        geo_query=None,\n        geo_dataset_type=None,\n        geo_entry_type=None,\n        suppress_validation=False,\n    ):\n        self.geo_fields = {\n            \"query\": geo_query,\n            \"dataset_type\": geo_dataset_type,\n            \"entry_type\": geo_entry_type,\n            \"publication_date\": publication_date,\n            \"organism\": organism,\n        }\n        for k in self.geo_fields:\n            if type(self.geo_fields[k]) == list:\n                self.geo_fields[k] = \" \".join(self.geo_fields[k])\n        self.search_sra = True\n        self.search_geo = True\n        self.entries = {}\n        self.number_entries = 0\n        self.stats = {\n            \"study\": \"-\",\n            \"experiment\": \"-\",\n            \"run\": \"-\",\n            \"sample\": \"-\",\n            \"Date range\": \"-\",\n            \"Organisms\": \"-\",\n            \"Library strategy\": \"-\",\n            \"Library source\": \"-\",\n            \"Library selection\": \"-\",\n            \"Library layout\": \"-\",\n            \"Platform\": \"-\",\n            \"count_mean\": \"-\",\n            \"count_median\": \"-\",\n            \"count_stdev\": \"-\",\n        }\n        try:\n            super().__init__(\n                verbosity,\n                return_max,\n                query,\n                accession,\n                organism,\n                layout,\n                mbases,\n                publication_date,\n                platform,\n                selection,\n                source,\n                strategy,\n                title,\n                suppress_validation,\n            )\n        except MissingQueryException:\n            self.search_sra = False\n        if not any(self.geo_fields.values()):\n            self.search_geo = False\n        if not self.search_geo and not self.search_sra:\n            raise MissingQueryException()\n        # Narrowing down the total number of eligible uids\n        if self.fields[\"query\"]:\n            self.fields[\"query\"] += \" AND sra gds[Filter]\"\n        elif self.search_sra:\n            self.fields[\"query\"] = \"sra gds[Filter]\"\n        if self.geo_fields[\"query\"]:\n            self.geo_fields[\"query\"] += \" AND gds sra[Filter]\"\n        elif self.search_geo:\n            self.geo_fields[\"query\"] = \"gds sra[Filter]\"\n\n    def _format_geo_query_string(self):\n        term = \"\"\n        if self.geo_fields[\"query\"]:\n            term += self.geo_fields[\"query\"] + \" AND \"\n        if self.geo_fields[\"organism\"]:\n            term += self.geo_fields[\"organism\"] + \"[Organism] AND \"\n        if self.geo_fields[\"publication_date\"]:\n            dates = []\n            for date in self.fields[\"publication_date\"].split(\":\"):\n                dates.append(\"/\".join(date.split(\"-\")[::-1]))\n            term += \":\".join(dates) + \"[PDAT] AND \"\n        if self.geo_fields[\"dataset_type\"]:\n            term += self.geo_fields[\"dataset_type\"] + \"[DataSet Type] AND \"\n        if self.geo_fields[\"entry_type\"]:\n            term += self.geo_fields[\"entry_type\"] + \"[Entry Type] AND \"\n        return term[:-5]  # Removing trailing \" AND \"\n\n    def _format_geo_request(self):\n        payload = {\n            \"db\": \"gds\",\n            \"term\": self._format_geo_query_string(),\n            \"retmode\": \"json\",\n            \"retmax\": self.return_max * 10,\n            \"usehistory\": \"y\",\n        }\n        return payload\n\n    def _format_request(self):\n        if not self.search_geo:\n            retmax = self.return_max\n        else:\n            retmax = self.return_max * 10\n        payload = {\n            \"db\": \"sra\",\n            \"term\": self._format_query_string(),\n            \"retmode\": \"json\",\n            \"retmax\": retmax,\n        }\n        return payload\n\n    def search(self):\n        \"\"\"Sends the user query via requests to SRA, GEO DataSets, or both\"\"\"\n        if not self.search_geo:\n            super().search()\n        else:\n            # Step 1: retrieves the list of uids from GEO DataSets, and use\n            # ELink to find corresponding uids in SRA\n            geo_payload = self._format_geo_request()\n            try:\n                r = requests_3_retries().get(\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\",\n                    params=geo_payload,\n                    timeout=SEARCH_REQUEST_TIMEOUT,\n                )\n                r.raise_for_status()\n                result = r.json()[\"esearchresult\"]\n                query_key = result[\"querykey\"]\n                web_env = result[\"webenv\"]\n                elink_payload = {\n                    \"dbfrom\": \"gds\",\n                    \"db\": \"sra\",\n                    \"retmode\": \"xml\",\n                    \"query_key\": query_key,\n                    \"WebEnv\": web_env,\n                }\n                r = requests_3_retries().get(\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi\",\n                    params=elink_payload,\n                    timeout=SEARCH_REQUEST_TIMEOUT,\n                )\n                r.raise_for_status()\n                try:\n                    root = Et.fromstring(r.text)\n                    uids_from_geo = [\n                        elem.text\n                        for elem in root.findall(\".//LinkSet/LinkSetDb/Link/Id\")\n                    ]\n                except (Et.ParseError, TypeError, ValueError):\n                    uids_from_geo = []\n                # Step 2: Retrieve list of uids from SRA and\n                # Find the intersection of both lists of uids\n                if self.search_sra:\n                    r = requests_3_retries().get(\n                        \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\",\n                        params=self._format_request(),\n                        timeout=SEARCH_REQUEST_TIMEOUT,\n                    )\n                    r.raise_for_status()\n                    uids_from_sra = r.json()[\"esearchresult\"][\"idlist\"]\n                else:\n                    uids_from_sra = None\n                uids = self._combine_uids(uids_from_sra, uids_from_geo)\n                # Ensure that only return_max number of uids are used\n                uids = uids[: self.return_max]\n                # Step 3: retrieves the detailed information for each uid\n                # returned, in groups of SRA_SEARCH_GROUP_SIZE.\n                if not uids:\n                    print(\n                        f\"No results found for the following search query: \\n \"\n                        f\"SRA: {self.fields}\\nGEO DataSets: {self.geo_fields}\"\n                    )\n                    return  # If no queries found, return nothing\n                pbar = tqdm(total=len(uids))\n                for i in range(0, len(uids), SRA_SEARCH_GROUP_SIZE):\n                    current_uids = \",\".join(\n                        uids[i : min(i + SRA_SEARCH_GROUP_SIZE, len(uids))]\n                    )\n                    pbar.update(min(SRA_SEARCH_GROUP_SIZE, len(uids) - i))\n                    payload2 = {\"db\": \"sra\", \"retmode\": \"xml\", \"id\": current_uids}\n\n                    r = requests_3_retries().get(\n                        \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi\",\n                        params=payload2,\n                        timeout=SEARCH_REQUEST_TIMEOUT,\n                        stream=True,\n                    )\n                    r.raise_for_status()\n                    r.raw.decode_content = True\n                    self._format_response(r.raw)\n                pbar.close()\n                self._format_result()\n            except requests.exceptions.Timeout:\n                sys.exit(f\"Connection to the server has timed out. Please retry.\")\n            except requests.exceptions.HTTPError:\n                sys.exit(\n                    f\"HTTPError: This is likely caused by an invalid search query: \"\n                    f\"\\nURL queried: {r.url} \\nUser query: {self.fields}\"\n                )\n\n    def _combine_uids(self, uids_from_sra, uids_from_geo):\n        \"\"\"Combine SRA and GEO uid lists while preserving ordering stability.\"\"\"\n        if not uids_from_geo:\n            return []\n        combined = []\n        seen = set()\n        if uids_from_sra is not None:\n            sra_uid_set = set(uids_from_sra)\n            for uid in uids_from_geo:\n                if uid in sra_uid_set and uid not in seen:\n                    combined.append(uid)\n                    seen.add(uid)\n        else:\n            for uid in uids_from_geo:\n                if uid not in seen:\n                    combined.append(uid)\n                    seen.add(uid)\n        return combined\n\n    @classmethod\n    def info(cls):\n        \"\"\"Information on how to use GeoSearch.\n\n        Displays information on how to query GEO DataSets / SRA via\n        GeoSearch, including accepted inputs for geo_query,\n        geo_dataset_type and geo_entry_type.\n\n        Returns\n        -------\n        info: str\n            Information on how to use GeoSearch.\n        \"\"\"\n        info = (\n            \"General Information:\\n\"\n            \"--------------------\\n\"\n            \"GeoSearch (Or 'pysradb search --db geo ...' on the command line) \\n\"\n            \"is able to query both SRA and GEO DataSets, returning the subset \\n\"\n            \"of entries that appears within both search queries. \\n\\n\"\n            \"Queries sent to SRA and GEO DataSets will have 'sra gds[Filter]' \\n\"\n            \"and 'gds sra[Filter]' appended to the search queries respectively \\n\"\n            \"to ensure that the entries in the search result can also be found \\n\"\n            \"in the other API. \\n\\n\"\n            \"Queries sent to SRA uses the same fields as SraSearch, \\n\"\n            \"or 'pysradb search --db sra ...' on the command line. \\n\\n\"\n            \"The following fields, if used, are sent as part of the GEO DataSets query: \\n\"\n            \"organism, publication_date, geo_query, geo_dataset_type, geo_entry_type\\n\\n\"\n            \"Notes about GEO DataSets specific fields: \\n\"\n            \"----------------------------------------- \\n\"\n            \"geo_query: This is the free text query, similar to 'query', that \\n\"\n            \"is sent to GEO DataSets API. The 'query' field is the free text \\n\"\n            \"query sent to SRA API instead.\\n\\n\"\n            \"geo_dataset_type: The type of GEO DataSet, which can be one of the following: \\n\"\n            \"  expression profiling by array \\n\"\n            \"  expression profiling by genome tiling array \\n\"\n            \"  expression profiling by high throughput sequencing \\n\"\n            \"  expression profiling by mpss \\n\"\n            \"  expression profiling by rt pcr \\n\"\n            \"  expression profiling by sage \\n\"\n            \"  expression profiling by snp array \\n\"\n            \"  genome binding/occupancy profiling by array \\n\"\n            \"  genome binding/occupancy profiling by genome tiling array \\n\"\n            \"  genome binding/occupancy profiling by high throughput sequencing \\n\"\n            \"  genome binding/occupancy profiling by snp array \\n\"\n            \"  genome variation profiling by array \\n\"\n            \"  genome variation profiling by genome tiling array \\n\"\n            \"  genome variation profiling by high throughput sequencing \\n\"\n            \"  genome variation profiling by snp array \\n\"\n            \"  methylation profiling by array \\n\"\n            \"  methylation profiling by genome tiling array \\n\"\n            \"  methylation profiling by high throughput sequencing \\n\"\n            \"  methylation profiling by snp array \\n\"\n            \"  non coding rna profiling by array \\n\"\n            \"  non coding rna profiling by genome tiling array \\n\"\n            \"  non coding rna profiling by high throughput sequencing \\n\"\n            \"  other \\n\"\n            \"  protein profiling by mass spec \\n\"\n            \"  protein profiling by protein array \\n\"\n            \"  snp genotyping by snp array \\n\"\n            \"  third party reanalysis\\n\\n\"\n            \"geo_dataset_type: The type of GEO entry, which can be one of the following: \\n\"\n            \"  gds\\n\"\n            \"  gpl\\n\"\n            \"  gse\\n\"\n            \"  gsm\\n\\n\"\n        )\n\n        return info\n"
  },
  {
    "path": "pysradb/sraweb.py",
    "content": "\"\"\"Utilities to interact with SRA online\"\"\"\n\nimport concurrent.futures\nimport os\nimport re\nimport sys\nimport time\nimport warnings\nfrom collections import OrderedDict\nfrom json.decoder import JSONDecodeError\nfrom xml.parsers.expat import ExpatError\n\nimport numpy as np\nimport pandas as pd\nimport requests\nimport xmltodict\n\nwarnings.simplefilter(action=\"ignore\", category=FutureWarning)\n\nfrom xml.sax.saxutils import escape\n\n\ndef xmlescape(data):\n    return escape(data, entities={\"'\": \"&apos;\", '\"': \"&quot;\"})\n\n\ndef _make_hashable(obj):\n    \"\"\"Convert unhashable types to hashable ones for pandas operations\"\"\"\n    if isinstance(obj, (OrderedDict, dict)):\n        # Extract text content from XML parsed dict/OrderedDict\n        if \"#text\" in obj:\n            return obj[\"#text\"]  # Extract the actual text content\n        elif len(obj) == 1 and \"@xmlns\" in obj:\n            return pd.NA  # Handle xmlns-only dicts as missing data\n        else:\n            # Fallback to string representation for other dict structures\n            return str(obj)\n    elif isinstance(obj, list):\n        # Convert list to tuple\n        return tuple(_make_hashable(item) for item in obj)\n    else:\n        return obj\n\n\ndef _order_first(df, column_order_list):\n    columns = column_order_list + [\n        col for col in df.columns.tolist() if col not in column_order_list\n    ]\n    # check if all columns do exist in the dataframe\n    if len(set(columns).intersection(df.columns)) == len(columns):\n        df = df.loc[:, columns]\n    df = df.mask(df.map(str).eq(\"[]\"))\n    # Filter out XML namespace artifacts\n    df = df.replace(regex=r\"^@xmlns.*\", value=pd.NA).infer_objects(copy=False)\n    df = df.fillna(pd.NA)\n    return df\n\n\ndef _retry_response(base_url, payload, key, max_retries=10):\n    \"\"\"Rerty fetching esummary if API rate limit exceeeds\"\"\"\n    for index, _ in enumerate(range(max_retries)):\n        try:\n            request = requests.get(base_url, params=OrderedDict(payload))\n            response = request.json()\n            results = response[key]\n            return response\n        except KeyError:\n            # sleep for increasing times\n            time.sleep(index + 1)\n            continue\n    raise RuntimeError(\"Failed to fetch esummary. API rate limit exceeded.\")\n\n\ndef get_retmax(n_records, retmax=500):\n    \"\"\"Get retstart and retmax till n_records are exhausted\"\"\"\n    for i in range(0, n_records, retmax):\n        yield i\n\n\nclass SRAweb(object):\n    def __init__(self, api_key=None):\n        \"\"\"\n        Initialize SRAweb for API-based access to SRA data.\n\n        Parameters\n        ----------\n\n        api_key: string\n                 API key for ncbi eutils. Optional, but recommended for higher rate limits.\n        \"\"\"\n        self.base_url = dict()\n        self.base_url[\"esummary\"] = (\n            \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n        )\n        self.base_url[\"esearch\"] = (\n            \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n        )\n        self.base_url[\"efetch\"] = (\n            \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi\"\n        )\n\n        self.ena_fastq_search_url = \"https://www.ebi.ac.uk/ena/portal/api/filereport\"\n        self.ena_params = [(\"result\", \"read_run\"), (\"fields\", \"fastq_ftp\")]\n\n        self.esearch_params = {}\n        self.esearch_params[\"sra\"] = [\n            (\"db\", \"sra\"),\n            (\"usehistory\", \"n\"),\n            (\"retmode\", \"json\"),\n        ]\n        self.esearch_params[\"geo\"] = [\n            (\"db\", \"gds\"),\n            (\"usehistory\", \"n\"),\n            (\"retmode\", \"json\"),\n        ]\n        self.efetch_params = [\n            (\"db\", \"sra\"),\n            (\"usehistory\", \"n\"),\n            (\"retmode\", \"runinfo\"),\n        ]\n\n        if api_key is not None:\n            self.esearch_params[\"sra\"].append((\"api_key\", str(api_key)))\n            self.esearch_params[\"geo\"].append((\"api_key\", str(api_key)))\n            self.efetch_params.append((\"api_key\", str(api_key)))\n            self.sleep_time = 1 / 10\n        else:\n            self.sleep_time = 1 / 3\n\n    @staticmethod\n    def format_xml(string):\n        \"\"\"Create a fake root to make 'string' a valid xml\n\n        Parameters\n        ----------\n        string: str\n\n        Returns\n        --------\n        xml: str\n        \"\"\"\n        # string = unescape(string.strip())\n        string = string.strip()\n        return \"<root>\" + string + \"</root>\"\n\n    @staticmethod\n    def xml_to_json(xml):\n        \"\"\"Convert xml to json.\n\n        Parameters\n        ----------\n        xml: str\n             Input XML\n\n        Returns\n        -------\n        xml_dict: dict\n                  Parsed xml as dict\n        \"\"\"\n        try:\n            xmldict = xmltodict.parse(\n                xml, process_namespaces=False, dict_constructor=OrderedDict\n            )\n            json = xmldict[\"root\"]\n        except ExpatError:\n            raise RuntimeError(\"Unable to parse xml: {}\".format(xml))\n        return json\n\n    def bioproject_to_srp(self, bioproject):\n        \"\"\"Convert PRJNA BioProject ID to SRP accession\n\n        Parameters\n        ----------\n        bioproject: str\n                   BioProject ID (e.g., 'PRJNA810439')\n\n        Returns\n        -------\n        srp_accessions: list\n                       List of SRP accessions found\n        \"\"\"\n        if not bioproject or pd.isna(bioproject):\n            return []\n\n        try:\n            import re\n\n            # Search SRA for records with this bioproject\n            search_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n            search_params = {\n                \"db\": \"sra\",\n                \"term\": f\"{bioproject}[BioProject]\",\n                \"retmode\": \"json\",\n                \"retmax\": \"50\",\n            }\n\n            response = requests.get(search_url, params=search_params, timeout=30)\n            result = response.json()\n            sra_uids = result.get(\"esearchresult\", {}).get(\"idlist\", [])\n\n            if not sra_uids:\n                return []\n\n            # Get summaries to extract SRP accessions\n            summary_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n            srp_set = set()\n\n            # Process in batches to avoid too many requests\n            for uid in sra_uids[:10]:  # Limit to first 10\n                try:\n                    summary_params = {\"db\": \"sra\", \"id\": uid, \"retmode\": \"json\"}\n\n                    summary_response = requests.get(\n                        summary_url, params=summary_params, timeout=30\n                    )\n                    summary_result = summary_response.json()\n\n                    if uid in summary_result.get(\"result\", {}):\n                        record = summary_result[\"result\"][uid]\n                        expxml = record.get(\"expxml\", \"\")\n\n                        # Extract SRP using regex from the XML\n                        srp_match = re.search(r'Study acc=\"(SRP\\d+)\"', expxml)\n                        if srp_match:\n                            srp_set.add(srp_match.group(1))\n\n                    time.sleep(0.1)  # Small delay between requests\n                except Exception:\n                    continue\n\n            return sorted(list(srp_set))\n\n        except Exception as e:\n            return []\n\n    def fetch_ena_fastq(self, srp):\n        \"\"\"Fetch FASTQ records from ENA (EXPERIMENTAL)\n\n        Parameters\n        ----------\n        srp: string\n             Srudy accession\n\n        Returns\n        -------\n        srr_url: list\n                 List of SRR fastq urls\n        \"\"\"\n        payload = self.ena_params.copy()\n        payload += [(\"accession\", srp)]\n        request = requests.get(self.ena_fastq_search_url, params=OrderedDict(payload))\n        request_text = request.text.strip()\n        urls = []\n        for line in request_text.split(\"\\n\"):\n            if \"fastq_ftp\" in line:\n                continue\n            line = line.strip()\n            line_split = line.split(\"\\t\")\n            if len(line_split) != 2:\n                continue\n            url, srr = line.split(\"\\t\")\n            # sometimes this needs to be flipped\n            if \"sra.ebi.ac.uk\" in srr:\n                url, srr = srr, url\n            http_url = \"http://{}\".format(url)\n            ftp_url = url.replace(\"ftp.sra.ebi.ac.uk/\", \"era-fasp@fasp.sra.ebi.ac.uk:\")\n            urls += [(srr, http_url, ftp_url)]\n\n        # Paired end case\n        def _handle_url_split(url_split):\n            url1_1 = pd.NA\n            url1_2 = pd.NA\n            for url_temp in url_split:\n                if \"_1.fastq.gz\" in url_temp:\n                    url1_1 = url_temp\n                elif \"_2.fastq.gz\" in url_temp:\n                    url1_2 = url_temp\n            return url1_1, url1_2\n\n        if \";\" in request_text:\n            urls_expanded = []\n            for srr, url1, url2 in urls:\n                # strip _1, _2\n                srr = srr.split(\"_\")[0]\n                if \";\" in url1:\n                    url1_split = url1.split(\";\")\n                    if len(url1_split) == 2:\n                        url1_1, url1_2 = url1_split\n                    else:\n                        # warnings.warn('ignoring extra urls found for paired end accession')\n                        url1_1, url1_2 = _handle_url_split(url1_split)\n                    url1_2 = \"http://{}\".format(url1_2)\n                    url2_split = url2.split(\";\")\n                    if len(url2_split) == 2:\n                        url2_1, url2_2 = url2_split\n                    else:\n                        # warnings.warn('ignoring extra urls found for paired end accession')\n                        url2_1, url2_2 = _handle_url_split(url2_split)\n                else:\n                    url1_1 = url1\n                    url2_1 = url2\n                    url1_2 = \"\"\n                    url2_2 = \"\"\n                urls_expanded.append((srr, url1_1, url1_2, url2_1, url2_2))\n            df = pd.DataFrame(\n                urls_expanded,\n                columns=[\n                    \"run_accession\",\n                    \"ena_fastq_http_1\",\n                    \"ena_fastq_http_2\",\n                    \"ena_fastq_ftp_1\",\n                    \"ena_fastq_ftp_2\",\n                ],\n            ).sort_values(by=\"run_accession\")\n            return df\n        else:\n            return pd.DataFrame(\n                urls, columns=[\"run_accession\", \"ena_fastq_http\", \"ena_fastq_ftp\"]\n            ).sort_values(by=\"run_accession\")\n\n    def create_esummary_params(self, esearchresult, db=\"sra\"):\n        query_key = esearchresult[\"querykey\"]\n        webenv = esearchresult[\"webenv\"]\n        retstart = esearchresult[\"retstart\"]\n\n        # TODO this should be adaptive to build\n        # upon using the 'count' result in esearch result,\n        # Currently only supports a max of 500 records.\n        # retmax = esearchresult[\"retmax\"]\n        retmax = 500\n\n        return [\n            (\"query_key\", query_key),\n            (\"WebEnv\", webenv),\n            (\"retstart\", retstart),\n            (\"retmax\", retmax),\n        ]\n\n    def get_esummary_response(self, db, term, usehistory=\"y\"):\n        assert db in [\"sra\", \"geo\"]\n\n        payload = self.esearch_params[db].copy()\n        if isinstance(term, list):\n            term = \" OR \".join(term)\n        payload += [(\"term\", term)]\n        request = requests.post(self.base_url[\"esearch\"], data=OrderedDict(payload))\n        try:\n            esearch_response = request.json()\n        except JSONDecodeError:\n            sys.stderr.write(\n                \"Unable to parse esummary response json: {}{}. Will retry once.\".format(\n                    request.text, os.linesep\n                )\n            )\n            retry_after = request.headers.get(\"Retry-After\", 1)\n            time.sleep(int(retry_after))\n            request = requests.post(self.base_url[\"esearch\"], data=OrderedDict(payload))\n            try:\n                esearch_response = request.json()\n            except JSONDecodeError as e:\n                error_msg = (\n                    \"Unable to parse esummary response json: {}{}. Aborting.\".format(\n                        request.text, os.linesep\n                    )\n                )\n                sys.stderr.write(error_msg)\n                raise ValueError(error_msg) from e\n\n            # retry again\n\n        if \"esummaryresult\" in esearch_response:\n            print(\"No result found\")\n            return\n        if \"error\" in esearch_response:\n            # API rate limite exceeded\n            esearch_response = _retry_response(\n                self.base_url[\"esearch\"], payload, \"esearchresult\"\n            )\n\n        n_records = int(esearch_response[\"esearchresult\"][\"count\"])\n\n        results = {}\n        for retstart in get_retmax(n_records):\n            payload = self.esearch_params[db].copy()\n            payload += self.create_esummary_params(esearch_response[\"esearchresult\"])\n            payload = OrderedDict(payload)\n            payload[\"retstart\"] = retstart\n            request = requests.get(\n                self.base_url[\"esummary\"], params=OrderedDict(payload)\n            )\n            try:\n                response = request.json()\n            except JSONDecodeError:\n                time.sleep(1)\n                response = _retry_response(self.base_url[\"esummary\"], payload, \"result\")\n\n            if \"error\" in response:\n                # API rate limite exceeded\n                response = _retry_response(self.base_url[\"esummary\"], payload, \"result\")\n            if retstart == 0:\n                results = response[\"result\"]\n            else:\n                result = response[\"result\"]\n                for key, value in result.items():\n                    if key in list(results.keys()):\n                        results[key] += value\n                    else:\n                        results[key] = value\n        return results\n\n    def get_efetch_response(self, db, term, usehistory=\"y\"):\n        assert db in [\"sra\", \"geo\"]\n\n        payload = self.esearch_params[db].copy()\n        if isinstance(term, list):\n            term = \" OR \".join(term)\n        payload += [(\"term\", term)]\n\n        request = requests.get(self.base_url[\"esearch\"], params=OrderedDict(payload))\n        esearch_response = request.json()\n        if \"esummaryresult\" in esearch_response:\n            print(\"No result found\")\n            return\n        if \"error\" in esearch_response:\n            # API rate limite exceeded\n            esearch_response = _retry_response(\n                self.base_url[\"esearch\"], payload, \"esearchresult\"\n            )\n\n        n_records = int(esearch_response[\"esearchresult\"][\"count\"])\n\n        results = {}\n        for retstart in get_retmax(n_records):\n            payload = self.efetch_params.copy()\n            payload += self.create_esummary_params(esearch_response[\"esearchresult\"])\n            payload = OrderedDict(payload)\n            payload[\"retstart\"] = retstart\n            request = requests.get(self.base_url[\"efetch\"], params=OrderedDict(payload))\n            request_text = request.text.strip()\n            try:\n                request_json = request.json()\n            except:\n                request_json = {}  # eval(request_text)\n\n            if \"error\" in request_json:\n                # print(\"Encountered: {}\".format(request_json))\n                # print(\"Headers: {}\".format(request.headers))\n                # Handle API-rate limit exceeding\n                try:\n                    retry_after = request.headers[\"Retry-After\"]\n                except KeyError:\n                    if request_json[\"error\"] == \"error forwarding request\":\n                        error_msg = \"Encountered error while making request.\\n\"\n                        sys.stderr.write(error_msg)\n                        raise RuntimeError(error_msg.strip())\n                time.sleep(int(retry_after))\n                # try again\n                request = requests.get(\n                    self.base_url[\"efetch\"], params=OrderedDict(payload)\n                )\n                request_text = request.text.strip()\n                try:\n                    request_json = request.json()\n                    if request_json[\"error\"] == \"error forwarding request\":\n                        sys.stderr.write(\"Encountered error while making request.\\n\")\n                        return\n                except:\n                    request_json = {}  # eval(request_text)\n            try:\n                xml_response = xmltodict.parse(\n                    request_text, process_namespaces=False, dict_constructor=OrderedDict\n                )\n\n                exp_response = xml_response.get(\"EXPERIMENT_PACKAGE_SET\", {})\n                response = exp_response.get(\"EXPERIMENT_PACKAGE\", {})\n            except ExpatError as e:\n                error_msg = \"Unable to parse xml: {}{}\".format(request_text, os.linesep)\n                sys.stderr.write(error_msg)\n                raise ValueError(error_msg.strip()) from e\n            if not response:\n                error_msg = \"Unable to parse xml response. Received: {}{}\".format(\n                    xml_response, os.linesep\n                )\n                sys.stderr.write(error_msg)\n                raise ValueError(error_msg.strip())\n            if retstart == 0:\n                results = response\n            else:\n                result = response\n                for value in result:\n                    results.append(value)\n            time.sleep(self.sleep_time)\n        return results\n\n    def sra_metadata(\n        self,\n        srp,\n        sample_attribute=False,\n        detailed=False,\n        expand_sample_attributes=False,\n        output_read_lengths=False,\n        include_pmids=False,\n        enrich=False,\n        enrich_backend=\"ollama/phi3\",\n        **kwargs,\n    ):\n        esummary_result = self.get_esummary_response(\"sra\", srp)\n        try:\n            uids = esummary_result[\"uids\"]\n        except KeyError:\n            return None\n\n        exps_xml = OrderedDict()\n        runs_xml = OrderedDict()\n\n        exps_json = OrderedDict()\n        runs_json = OrderedDict()\n        for uid in uids:\n            exps_xml[uid] = self.format_xml(esummary_result[uid][\"expxml\"])\n            runs_xml[uid] = self.format_xml(esummary_result[uid][\"runs\"])\n\n        for uid in uids:\n            exps_json[uid] = self.xml_to_json(exps_xml[uid])\n            runs_json[uid] = self.xml_to_json(runs_xml[uid])\n\n        sra_record = []\n        for uid, run_json in runs_json.items():\n            exp_json = exps_json[uid]\n            exp_summary = exp_json[\"Summary\"]\n            exp_title = exp_summary.get(\"Title\", pd.NA)\n            exp_platform = exp_summary.get(\"Platform\", {})\n            statistics = exp_summary.get(\"Statistics\", {})\n            if isinstance(exp_platform, OrderedDict):\n                exp_platform_model = exp_platform.get(\"@instrument_model\", pd.NA)\n                exp_platform_desc = exp_platform.get(\"#text\", pd.NA)\n            else:\n                exp_platform_model = pd.NA\n                exp_platform_desc = pd.NA\n\n            exp_total_runs = statistics.get(\"@total_runs\", pd.NA)\n            exp_total_spots = statistics.get(\"@total_spots\", pd.NA)\n            exp_total_size = statistics.get(\"@total_size\", pd.NA)\n\n            # experiment_accession\n            exp_ID = exp_json[\"Experiment\"][\"@acc\"]\n            # experiment_title\n            exp_name = exp_json[\"Experiment\"][\"@name\"]\n\n            exp_organism = exp_json.get(\"Organism\", pd.NA)\n            exp_organism_name = pd.NA\n            exp_taxid = pd.NA\n            if isinstance(exp_organism, dict):\n                exp_organism_name = exp_organism.get(\"@ScientificName\", pd.NA)\n                exp_taxid = exp_organism[\"@taxid\"]\n\n            exp_instrument = list(exp_json[\"Instrument\"].values())[0]\n\n            exp_sample = exp_json[\"Sample\"]\n            # sample_accession\n            exp_sample_ID = exp_sample[\"@acc\"]\n            # sample_title\n            exp_sample_name = exp_sample[\"@name\"]\n\n            exp_library_descriptor = exp_json[\"Library_descriptor\"]\n            # library_strategy\n            exp_library_strategy = exp_library_descriptor[\"LIBRARY_STRATEGY\"]\n            if isinstance(exp_library_strategy, dict):\n                exp_library_strategy = exp_library_strategy[\"#text\"]\n            # library_source\n            exp_library_source = exp_library_descriptor[\"LIBRARY_SOURCE\"]\n            if isinstance(exp_library_source, dict):\n                exp_library_source = exp_library_source[\"#text\"]\n            # library_selection\n            exp_library_selection = exp_library_descriptor[\"LIBRARY_SELECTION\"]\n            if isinstance(exp_library_selection, dict):\n                exp_library_selection = exp_library_selection[\"#text\"]\n            # library_name\n            exp_library_name = exp_library_descriptor.get(\"LIBRARY_NAME\", \"\")\n            if isinstance(exp_library_selection, dict):\n                exp_library_name = exp_library_name[\"#text\"]\n            # library_layout\n            exp_library_layout = list(exp_library_descriptor[\"LIBRARY_LAYOUT\"].keys())[\n                0\n            ]\n            # biosample\n            exp_biosample = exp_json.get(\"Biosample\", pd.NA)\n            # bioproject\n            exp_bioproject = exp_json.get(\"Bioproject\", pd.NA)\n\n            experiment_record = OrderedDict()\n            experiment_record[\"study_accession\"] = exp_json[\"Study\"][\"@acc\"]\n            experiment_record[\"study_title\"] = exp_json[\"Study\"][\"@name\"]\n            experiment_record[\"experiment_accession\"] = exp_ID\n            experiment_record[\"experiment_title\"] = exp_name\n            experiment_record[\"experiment_desc\"] = exp_title\n\n            experiment_record[\"organism_taxid\"] = exp_taxid\n            experiment_record[\"organism_name\"] = exp_organism_name\n\n            experiment_record[\"library_name\"] = exp_library_name\n            experiment_record[\"library_strategy\"] = exp_library_strategy\n            experiment_record[\"library_source\"] = exp_library_source\n            experiment_record[\"library_selection\"] = exp_library_selection\n            experiment_record[\"library_layout\"] = exp_library_layout\n            experiment_record[\"sample_accession\"] = exp_sample_ID\n            experiment_record[\"sample_title\"] = exp_sample_name\n            experiment_record[\"biosample\"] = exp_biosample\n            experiment_record[\"bioproject\"] = exp_bioproject\n            experiment_record[\"instrument\"] = exp_instrument\n            experiment_record[\"instrument_model\"] = exp_platform_model\n            experiment_record[\"instrument_model_desc\"] = exp_platform_desc\n            experiment_record[\"total_spots\"] = exp_total_spots\n            experiment_record[\"total_size\"] = exp_total_size\n            if not run_json:\n                # Sometimes the run_accession is not populated by NCBI:\n                # df2 = self.srx_to_srr(exp_ID)\n                # extra_fields = set(experiment_record.keys()).difference(df2.columns.tolist())\n                # for idx, row in df2.iterrows():\n                #    for field in extra_fields:\n                #        experiment_record[field] = row[field]\n                sra_record.append(experiment_record)\n                continue\n            runs = run_json[\"Run\"]\n            if not isinstance(runs, list):\n                runs = [runs]\n            for run_record in runs:\n                run_accession = run_record[\"@acc\"]\n                run_total_spots = run_record[\"@total_spots\"]\n                run_total_bases = run_record[\"@total_bases\"]\n\n                experiment_record[\"run_accession\"] = run_accession\n                experiment_record[\"run_total_spots\"] = run_total_spots\n                experiment_record[\"run_total_bases\"] = run_total_bases\n\n                sra_record.append(experiment_record.copy())\n\n        # TODO: the detailed call below does redundant operations\n        # the code above this can be completeley done away with\n\n        # Convert any unhashable types to hashable ones before creating DataFrame\n        hashable_records = []\n        for record in sra_record:\n            hashable_record = {k: _make_hashable(v) for k, v in record.items()}\n            hashable_records.append(hashable_record)\n\n        metadata_df = pd.DataFrame(hashable_records).drop_duplicates()\n        if \"run_accession\" in metadata_df.columns:\n            metadata_df = metadata_df.sort_values(by=\"run_accession\")\n        metadata_df.columns = [x.lower().strip() for x in metadata_df.columns]\n        # Filter out XML namespace artifacts and replace with NA\n        metadata_df = metadata_df.replace(\n            regex=r\"^@xmlns.*\", value=pd.NA\n        ).infer_objects(copy=False)\n        if not detailed:\n            return metadata_df\n\n        time.sleep(self.sleep_time)\n        efetch_result = self.get_efetch_response(\"sra\", srp)\n        if not isinstance(efetch_result, list):\n            if efetch_result:\n                efetch_result = [efetch_result]\n            else:\n                return None\n\n        detailed_records = []\n        for record in efetch_result:\n            if \"SAMPLE\" in record.keys() and \"SAMPLE_ATTRIBUTES\" in record[\"SAMPLE\"]:\n                sample_attributes = record[\"SAMPLE\"][\"SAMPLE_ATTRIBUTES\"][\n                    \"SAMPLE_ATTRIBUTE\"\n                ]\n            else:\n                sample_attributes = []\n            if isinstance(sample_attributes, OrderedDict):\n                sample_attributes = [sample_attributes]\n            exp_record = record[\"EXPERIMENT\"]\n            exp_attributes = exp_record.get(\"EXPERIMENT_ATTRIBUTES\", {})\n            run_sets = record[\"RUN_SET\"].get(\"RUN\", [])\n\n            if not isinstance(run_sets, list):\n                run_sets = [run_sets]\n\n            for run_set in run_sets:\n                detailed_record = OrderedDict()\n                if not run_json:\n                    # Add experiment accession if no run info found earlier\n                    detailed_record[\"experiment_accession\"] = exp_record[\"@accession\"]\n                # detailed_record[\"experiment_title\"] = exp_record[\"TITLE\"]\n                for key, values in exp_attributes.items():\n                    key = key.lower()\n                    for value_x in values:\n                        if not isinstance(value_x, dict):\n                            continue\n                        tag = value_x[\"TAG\"].lower()\n                        value = value_x[\"VALUE\"] if \"VALUE\" in value_x else None\n                        detailed_record[tag] = value\n                lib_record = exp_record[\"DESIGN\"][\"LIBRARY_DESCRIPTOR\"]\n                for key, value in lib_record.items():\n                    key = key.lower()\n                    if key == \"library_layout\":\n                        value = list(value.keys())[0]\n                    elif key == \"library_construction_protocol\":\n                        continue\n                    # detailed_record[key] = value\n\n                detailed_record[\"run_accession\"] = run_set[\"@accession\"]\n                detailed_record[\"run_alias\"] = run_set[\"@alias\"]\n                sra_files = run_set.get(\"SRAFiles\", {})\n                sra_files = sra_files.get(\"SRAFile\", {})\n                if isinstance(sra_files, OrderedDict):\n                    # detailed_record[\"sra_url\"] = sra_files.get(\"@url\", pd.NA)\n                    if \"Alternatives\" in sra_files.keys():\n                        alternatives = sra_files[\"Alternatives\"]\n                        if not isinstance(alternatives, list):\n                            alternatives = [alternatives]\n                        for alternative in alternatives:\n                            org = alternative[\"@org\"].lower()\n                            for key in alternative.keys():\n                                if key == \"@org\":\n                                    continue\n                                detailed_record[\n                                    \"{}_{}\".format(org, key.replace(\"@\", \"\"))\n                                ] = alternative[key]\n\n                else:\n                    for sra_file in sra_files:\n                        # Multiple download URLs\n                        # Use the one where the download filename corresponds to the SRR\n                        cluster = sra_file.get(\"@cluster\", None).lower().strip()\n                        if cluster is None:\n                            continue\n                        for key in sra_file.keys():\n                            if key == \"@cluster\":\n                                continue\n                            if key == \"Alternatives\":\n                                # Example: SRP184142\n                                alternatives = sra_file[\"Alternatives\"]\n                                if not isinstance(alternatives, list):\n                                    alternatives = [alternatives]\n                                for alternative in alternatives:\n                                    org = alternative[\"@org\"].lower()\n                                    for key in alternative.keys():\n                                        if key == \"@org\":\n                                            continue\n                                        detailed_record[\n                                            \"{}_{}\".format(org, key.replace(\"@\", \"\"))\n                                        ] = alternative[key]\n                            else:\n                                detailed_record[\n                                    \"{}_{}\".format(cluster, key.replace(\"@\", \"\"))\n                                ] = sra_file[key]\n\n                expt_ref = run_set[\"EXPERIMENT_REF\"]\n                detailed_record[\"experiment_alias\"] = expt_ref.get(\"@refname\", \"\")\n                # detailed_record[\"run_total_bases\"] = run_set[\"@total_bases\"]\n                # detailed_record[\"run_total_spots\"] = run_set[\"@total_spots\"]\n                for sample_attribute in sample_attributes:\n                    dict_values = list(sample_attribute.values())\n                    if len(dict_values) > 1:\n                        detailed_record[dict_values[0]] = dict_values[1]\n                    else:\n                        # TODO: Investigate why these fields have just the key\n                        # but no value\n                        pass\n                detailed_records.append(detailed_record)\n        detailed_record_df = pd.DataFrame(detailed_records).drop_duplicates()\n        if (\n            \"run_accession\" in metadata_df.keys()\n            and \"run_accession\" in detailed_record_df.keys()\n        ):\n            metadata_df = metadata_df.merge(\n                detailed_record_df, on=\"run_accession\", how=\"outer\"\n            )\n        elif \"experiment_accession\" in detailed_record_df.keys():\n            metadata_df = metadata_df.merge(\n                detailed_record_df, on=\"experiment_accession\", how=\"outer\"\n            )\n\n        metadata_df = metadata_df[metadata_df.columns.dropna()]\n        metadata_df = metadata_df.drop_duplicates()\n        metadata_df = metadata_df.replace(r\"^\\s*$\", pd.NA, regex=True)\n        ena_cols = [\n            \"ena_fastq_http\",\n            \"ena_fastq_http_1\",\n            \"ena_fastq_http_2\",\n            \"ena_fastq_ftp\",\n            \"ena_fastq_ftp_1\",\n            \"ena_fastq_ftp_2\",\n        ]\n        empty_df = pd.DataFrame(columns=ena_cols)\n        metadata_df = pd.concat((metadata_df, empty_df), axis=0)\n\n        if \"run_accession\" in metadata_df.columns:\n            metadata_df = metadata_df.set_index(\"run_accession\")\n        # multithreading lookup on ENA, since a lot of time is spent waiting\n        # for its reply\n        with concurrent.futures.ThreadPoolExecutor(max_workers=5) as executor:\n            # load our function calls into a list of futures\n            futures = [\n                executor.submit(self.fetch_ena_fastq, srp)\n                for srp in metadata_df.study_accession.unique()\n            ]\n            # now proceed synchronously\n            for future in concurrent.futures.as_completed(futures):\n                ena_results = future.result()\n                if ena_results.shape[0]:\n                    ena_results = ena_results.set_index(\"run_accession\")\n                    metadata_df.update(ena_results)\n        metadata_df = metadata_df.reset_index()\n        metadata_df = metadata_df.fillna(pd.NA)\n        metadata_df.columns = [x.lower().strip() for x in metadata_df.columns]\n\n        # Add PMID column when detailed=True and include_pmids=True\n        if include_pmids:\n            try:\n                sra_accessions = [srp] if isinstance(srp, str) else srp\n                pmid_df = self.sra_to_pmid(sra_accessions)\n\n                if pmid_df is not None and not pmid_df.empty:\n                    pmid_map = {}\n                    for _, row in pmid_df.iterrows():\n                        study_acc = row.get(\"sra_accession\", None)\n                        pmid = row.get(\"pmid\")\n                        if not pd.isna(pmid):\n                            if study_acc not in pmid_map:\n                                pmid_map[study_acc] = []\n                            pmid_map[study_acc].append(str(pmid))\n\n                    metadata_df[\"pmid\"] = metadata_df.apply(\n                        lambda row: \",\".join(\n                            pmid_map.get(row.get(\"study_accession\", \"\"), [\"\"])\n                        ),\n                        axis=1,\n                    )\n                    metadata_df[\"pmid\"] = metadata_df[\"pmid\"].replace(\"\", pd.NA)\n                else:\n                    metadata_df[\"pmid\"] = pd.NA\n\n            except Exception as e:\n                metadata_df[\"pmid\"] = pd.NA\n\n        # Filter out XML namespace artifacts and replace with NA\n        metadata_df = metadata_df.replace(\n            regex=r\"^@xmlns.*\", value=pd.NA\n        ).infer_objects(copy=False)\n\n        # Add GSE and GSM columns when detailed=True\n        if detailed:\n            try:\n                unique_srps = metadata_df[\"study_accession\"].dropna().unique().tolist()\n                if unique_srps:\n                    gse_df = self.srp_to_gse(unique_srps)\n                    if gse_df is not None and not gse_df.empty:\n                        srp_to_gse_map = {}\n                        for _, row in gse_df.iterrows():\n                            srp_acc = row.get(\"study_accession\")\n                            gse_acc = row.get(\"study_alias\")\n                            if not pd.isna(srp_acc) and not pd.isna(gse_acc):\n                                if srp_acc not in srp_to_gse_map:\n                                    srp_to_gse_map[srp_acc] = []\n                                srp_to_gse_map[srp_acc].append(gse_acc)\n\n                        metadata_df[\"study_geo_accession\"] = metadata_df[\n                            \"study_accession\"\n                        ].map(\n                            lambda x: (\n                                \",\".join(srp_to_gse_map.get(x, []))\n                                if x in srp_to_gse_map\n                                else pd.NA\n                            )\n                        )\n                        metadata_df[\"study_geo_accession\"] = metadata_df[\n                            \"study_geo_accession\"\n                        ].replace(\"\", pd.NA)\n                    else:\n                        metadata_df[\"study_geo_accession\"] = pd.NA\n                else:\n                    metadata_df[\"study_geo_accession\"] = pd.NA\n\n                unique_srxs = (\n                    metadata_df[\"experiment_accession\"].dropna().unique().tolist()\n                )\n                if unique_srxs:\n                    gsm_response = self.fetch_gds_results(unique_srxs)\n                    if gsm_response is not None and not gsm_response.empty:\n                        srx_to_gsm_map = {}\n                        for _, row in gsm_response.iterrows():\n                            if row.get(\"entrytype\") == \"GSM\":\n                                gsm_acc = row.get(\"accession\")\n                                srx_acc = row.get(\"SRA\")\n                                if not pd.isna(srx_acc) and not pd.isna(gsm_acc):\n                                    srx_to_gsm_map[srx_acc] = gsm_acc\n\n                        metadata_df[\"experiment_geo_accession\"] = metadata_df[\n                            \"experiment_accession\"\n                        ].map(lambda x: srx_to_gsm_map.get(x, pd.NA))\n                    else:\n                        metadata_df[\"experiment_geo_accession\"] = pd.NA\n                else:\n                    metadata_df[\"experiment_geo_accession\"] = pd.NA\n\n            except Exception as e:\n                metadata_df[\"study_geo_accession\"] = pd.NA\n                metadata_df[\"experiment_geo_accession\"] = pd.NA\n\n        if enrich and not metadata_df.empty:\n            try:\n                from pysradb.metadata_enrichment import create_metadata_extractor\n\n                extractor = create_metadata_extractor(\n                    method=\"llm\", backend=enrich_backend\n                )\n                metadata_df = extractor.enrich_dataframe(\n                    metadata_df, text_column=None, prefix=\"guessed_\"\n                )\n            except Exception as e:\n                error_msg = str(e)\n                if \"Ollama is not installed or not running\" in error_msg:\n                    print(f\"Error: {error_msg}\")\n                    print(\n                        \"Metadata enrichment requires Ollama to be installed and running.\"\n                    )\n                    print(\n                        \"Please install Ollama from https://ollama.ai/ and follow these steps:\"\n                    )\n                    print(\"1. Start Ollama server: ollama serve\")\n                    print(\"2. Pull a model: ollama pull phi3\")\n                    print(\"3. Try again or use a different enrichment backend\")\n                    raise\n                else:\n                    print(f\"Warning: Enrichment failed: {e}\")\n\n        if \"run_accession\" in metadata_df.columns:\n            return metadata_df.sort_values(by=\"run_accession\")\n        return metadata_df\n\n    def fetch_gds_results(self, gse, **kwargs):\n        result = self.get_esummary_response(\"geo\", gse)\n\n        try:\n            uids = result[\"uids\"]\n        except KeyError:\n            print(\"No results found for {} | Obtained result: {}\".format(gse, result))\n            return None\n        gse_records = []\n        for uid in uids:\n            record = result[uid]\n            del record[\"uid\"]\n            extrelations = record.get(\"extrelations\") or []\n            if extrelations:\n                for extrelation in extrelations:\n                    keys = list(extrelation.keys())\n                    values = list(extrelation.values())\n                    assert sorted(keys) == sorted(\n                        [\"relationtype\", \"targetobject\", \"targetftplink\"]\n                    )\n                    assert len(values) == 3\n                    record[extrelation[\"relationtype\"]] = extrelation[\"targetobject\"]\n                del record[\"extrelations\"]\n                gse_records.append(record)\n                continue\n\n            # Fallback for records without extrelations (e.g., spatial transcriptomics datasets)\n            samples = record.get(\"samples\") or []\n            if samples:\n                record[\"samples\"] = samples\n            gse_records.append(record)\n        if not len(gse_records):\n            print(\"No results found for {}\".format(gse))\n            return None\n        return pd.DataFrame(gse_records)\n\n    def fetch_gsm_soft(self, gsm_ids):\n        \"\"\"\n        Fetch detailed GSM metadata in SOFT format.\n\n        Args:\n            gsm_ids: List of GSM accessions\n\n        Returns:\n            Dictionary mapping GSM accession to parsed SOFT metadata\n        \"\"\"\n        if isinstance(gsm_ids, str):\n            gsm_ids = [gsm_ids]\n\n        gsm_data = {}\n        for gsm in gsm_ids:\n            try:\n                url = f\"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc={gsm}&targ=self&form=text&view=full\"\n                response = requests.get(url, timeout=30)\n                response.raise_for_status()\n\n                # Parse SOFT format\n                soft_text = response.text\n                metadata = {}\n                characteristics = []\n\n                for line in soft_text.split(\"\\n\"):\n                    line = line.strip()\n                    if line.startswith(\"!Sample_\"):\n                        if \" = \" in line:\n                            key, value = line.split(\" = \", 1)\n                            key = key.replace(\"!Sample_\", \"\").lower()\n\n                            # Handle characteristics specially - they can appear multiple times\n                            if \"characteristics\" in key:\n                                characteristics.append(value)\n                            else:\n                                # Store in metadata dict\n                                # Join multiple values with semicolon for consistency\n                                if key not in metadata:\n                                    metadata[key] = value\n                                elif isinstance(metadata[key], list):\n                                    metadata[key].append(value)\n                                else:\n                                    # Convert to list if we have multiple values\n                                    metadata[key] = [metadata[key], value]\n\n                # Convert list values to semicolon-separated strings\n                for key, value in metadata.items():\n                    if isinstance(value, list):\n                        metadata[key] = \"; \".join(str(v) for v in value)\n\n                # Process characteristics into a dict\n                char_dict = {}\n                for char in characteristics:\n                    if \": \" in char:\n                        char_key, char_val = char.split(\": \", 1)\n                        char_dict[char_key.strip().lower()] = char_val.strip()\n\n                metadata[\"characteristics\"] = char_dict\n                gsm_data[gsm] = metadata\n\n            except Exception as e:\n                print(f\"Warning: Could not fetch SOFT data for {gsm}: {e}\")\n                gsm_data[gsm] = {}\n\n        return gsm_data\n\n    def geo_metadata(\n        self,\n        gse,\n        sample_attribute=False,\n        detailed=False,\n        expand_sample_attributes=False,\n        include_pmids=False,\n        enrich=False,\n        enrich_backend=\"ollama/phi3\",\n        **kwargs,\n    ):\n        if isinstance(gse, str):\n            gse = [gse]\n        if not gse:\n            return pd.DataFrame(\n                columns=[\n                    \"study_accession\",\n                    \"study_title\",\n                    \"study_summary\",\n                    \"organism_name\",\n                    \"platform_accession\",\n                    \"platform_title\",\n                    \"experiment_type\",\n                    \"bioproject\",\n                    \"submission_date\",\n                    \"supplementary_files\",\n                    \"series_ftp\",\n                    \"sample_accession\",\n                    \"sample_title\",\n                ]\n            )\n\n        geo_response = self.get_esummary_response(\"geo\", gse)\n        if not geo_response:\n            return pd.DataFrame(\n                columns=[\n                    \"study_accession\",\n                    \"study_title\",\n                    \"study_summary\",\n                    \"organism_name\",\n                    \"platform_accession\",\n                    \"platform_title\",\n                    \"experiment_type\",\n                    \"bioproject\",\n                    \"submission_date\",\n                    \"supplementary_files\",\n                    \"series_ftp\",\n                    \"sample_accession\",\n                    \"sample_title\",\n                ]\n            )\n\n        gse_records = []\n        sample_accessions = []\n        for uid in geo_response.get(\"uids\", []):\n            record = geo_response.get(uid, {})\n            if record.get(\"entrytype\") != \"GSE\":\n                continue\n            gse_records.append(record)\n            for sample in record.get(\"samples\") or []:\n                accession = sample.get(\"accession\")\n                if accession and accession not in sample_accessions:\n                    sample_accessions.append(accession)\n\n        sample_details = {}\n        gsm_soft_data = {}\n        if (sample_attribute or detailed) and sample_accessions:\n            sample_response = self.get_esummary_response(\"geo\", sample_accessions)\n            if sample_response:\n                for uid in sample_response.get(\"uids\", []):\n                    entry = sample_response.get(uid, {})\n                    if entry.get(\"entrytype\") == \"GSM\":\n                        sample_details[entry.get(\"accession\")] = entry\n\n            # Fetch full SOFT metadata when detailed=True\n            if detailed:\n                gsm_soft_data = self.fetch_gsm_soft(sample_accessions)\n\n        # Get SRP mappings for all GSE IDs using gse_to_srp\n        gse_to_srp_map = {}\n        if gse and detailed:\n            try:\n                srp_df = self.gse_to_srp(gse)\n                if not srp_df.empty:\n                    # Group by study_alias and join multiple SRPs with comma\n                    for gse_id in gse:\n                        srps = (\n                            srp_df[srp_df[\"study_alias\"] == gse_id][\"study_accession\"]\n                            .dropna()\n                            .tolist()\n                        )\n                        if srps:\n                            gse_to_srp_map[gse_id] = \",\".join(srps)\n            except Exception:\n                pass\n\n        # Get SRX mappings for all GSM samples\n        gsm_to_srx_map = {}\n        if sample_accessions and detailed:\n            try:\n                # Use fetch_gds_results to get SRX from GSM entries\n                gsm_response = self.fetch_gds_results(sample_accessions)\n                if gsm_response is not None and not gsm_response.empty:\n                    for _, row in gsm_response.iterrows():\n                        if row.get(\"entrytype\") == \"GSM\":\n                            gsm_acc = row.get(\"accession\")\n                            srx = row.get(\"SRA\")\n                            if gsm_acc and srx and not pd.isna(srx):\n                                gsm_to_srx_map[gsm_acc] = srx\n            except Exception:\n                pass\n\n        rows = []\n        for record in gse_records:\n            study_accession = record.get(\"accession\", pd.NA)\n            platform = record.get(\"gpl\", pd.NA)\n            if (\n                isinstance(platform, str)\n                and platform.strip()\n                and not platform.upper().startswith(\"GPL\")\n                and platform.replace(\" \", \"\").isdigit()\n            ):\n                platform_accession = f\"GPL{platform.strip()}\"\n            else:\n                platform_accession = platform if platform else pd.NA\n\n            base_row = OrderedDict(\n                [\n                    (\"study_accession\", study_accession),\n                    (\"study_title\", record.get(\"title\", pd.NA)),\n                    (\"study_summary\", record.get(\"summary\", pd.NA)),\n                    (\"organism_name\", record.get(\"taxon\", pd.NA)),\n                    (\"platform_accession\", platform_accession),\n                    (\"platform_title\", record.get(\"platformtitle\", pd.NA)),\n                    (\"experiment_type\", record.get(\"gdstype\", pd.NA)),\n                    (\"bioproject\", record.get(\"bioproject\", pd.NA)),\n                    (\"submission_date\", record.get(\"pdat\", pd.NA)),\n                    (\"supplementary_files\", record.get(\"suppfile\", pd.NA)),\n                    (\"series_ftp\", record.get(\"ftplink\", pd.NA)),\n                    (\"sample_accession\", pd.NA),\n                    (\"sample_title\", pd.NA),\n                ]\n            )\n\n            # Add SRP column when detailed=True\n            if detailed:\n                base_row[\"study_sra_accession\"] = gse_to_srp_map.get(\n                    study_accession, pd.NA\n                )\n\n            if sample_attribute:\n                base_row[\"sample_summary\"] = pd.NA\n            if detailed:\n                base_row[\"sample_ftp\"] = pd.NA\n                base_row[\"sample_supplementary\"] = pd.NA\n                base_row[\"sample_geo2r\"] = pd.NA\n                base_row[\"experiment_sra_accession\"] = pd.NA\n                # Add SOFT metadata fields\n                base_row[\"sample_type\"] = pd.NA\n                base_row[\"sample_source_name\"] = pd.NA\n                base_row[\"sex\"] = pd.NA\n                base_row[\"age\"] = pd.NA\n                base_row[\"tissue\"] = pd.NA\n                base_row[\"cell_type\"] = pd.NA\n                base_row[\"disease\"] = pd.NA\n                base_row[\"treatment\"] = pd.NA\n                base_row[\"extract_protocol\"] = pd.NA\n                base_row[\"label_protocol\"] = pd.NA\n\n            samples = record.get(\"samples\") or []\n            if samples:\n                for sample in samples:\n                    row = base_row.copy()\n                    sample_acc = sample.get(\"accession\", pd.NA)\n                    row[\"sample_accession\"] = sample_acc\n                    row[\"sample_title\"] = sample.get(\"title\", pd.NA)\n                    sample_entry = sample_details.get(sample_acc, {})\n                    if sample_attribute:\n                        row[\"sample_summary\"] = sample_entry.get(\"summary\", pd.NA)\n                    if detailed:\n                        row[\"sample_ftp\"] = sample_entry.get(\"ftplink\", pd.NA)\n                        row[\"sample_supplementary\"] = sample_entry.get(\n                            \"suppfile\", pd.NA\n                        )\n                        row[\"sample_geo2r\"] = sample_entry.get(\"geo2r\", pd.NA)\n                        # Add SRX from gsm_to_srx_map\n                        row[\"experiment_sra_accession\"] = gsm_to_srx_map.get(\n                            sample_acc, pd.NA\n                        )\n\n                        # Add SOFT metadata - extract ALL available fields\n                        soft_data = gsm_soft_data.get(sample_acc, {})\n                        if soft_data:\n                            # Add all SOFT fields with sample_ prefix (characteristics handled separately)\n                            for soft_key, soft_val in soft_data.items():\n                                if soft_key != \"characteristics\":\n                                    col_name = f\"sample_{soft_key}\"\n                                    row[col_name] = soft_val\n\n                            # Also extract commonly used fields to canonical column names for convenience\n                            row[\"sample_type\"] = soft_data.get(\"type_ch1\", pd.NA)\n                            row[\"sample_source_name\"] = soft_data.get(\n                                \"source_name_ch1\", pd.NA\n                            )\n                            row[\"extract_protocol\"] = soft_data.get(\n                                \"extract_protocol_ch1\", pd.NA\n                            )\n                            row[\"label_protocol\"] = soft_data.get(\n                                \"label_protocol_ch1\", pd.NA\n                            )\n\n                            # Process characteristics: add standard ones to canonical names, preserve all as-is\n                            chars = soft_data.get(\"characteristics\", {})\n\n                            # Standard fields with canonical names (for backward compatibility)\n                            row[\"sex\"] = chars.get(\"sex\", chars.get(\"gender\", pd.NA))\n                            row[\"age\"] = chars.get(\"age\", pd.NA)\n                            row[\"tissue\"] = chars.get(\n                                \"tissue\",\n                                chars.get(\n                                    \"tissue type\",\n                                    chars.get(\"structures\", chars.get(\"organ\", pd.NA)),\n                                ),\n                            )\n                            row[\"cell_type\"] = chars.get(\n                                \"cell type\",\n                                chars.get(\"cell_type\", chars.get(\"celltype\", pd.NA)),\n                            )\n                            row[\"disease\"] = chars.get(\n                                \"disease\",\n                                chars.get(\n                                    \"disease state\",\n                                    chars.get(\n                                        \"disease_state\",\n                                        chars.get(\"disease_status\", pd.NA),\n                                    ),\n                                ),\n                            )\n                            row[\"treatment\"] = chars.get(\n                                \"treatment\",\n                                chars.get(\"compound\", chars.get(\"drug\", pd.NA)),\n                            )\n\n                            # Add ALL characteristics as-is (including custom ones)\n                            for char_key, char_val in chars.items():\n                                row[char_key] = char_val\n\n                    rows.append(row)\n            else:\n                rows.append(base_row)\n\n        if not rows:\n            return pd.DataFrame(\n                columns=list(base_row.keys()) if \"base_row\" in locals() else None\n            )\n\n        metadata_df = pd.DataFrame(rows)\n\n        if include_pmids:\n            try:\n                pmid_df = self.gse_to_pmid(gse)\n            except Exception:\n                pmid_df = None\n            if pmid_df is not None and not pmid_df.empty:\n                pmid_map = {}\n                for _, row in pmid_df.iterrows():\n                    gse_acc = row.get(\"gse_accession\")\n                    pmid = row.get(\"pmid\")\n                    if pd.isna(pmid):\n                        continue\n                    pmid_map.setdefault(gse_acc, []).append(str(pmid))\n\n                metadata_df[\"pmid\"] = metadata_df[\"study_accession\"].map(\n                    lambda accession: (\n                        \",\".join(pmid_map.get(accession, []))\n                        if accession in pmid_map\n                        else pd.NA\n                    )\n                )\n            else:\n                metadata_df[\"pmid\"] = pd.NA\n\n        metadata_df = metadata_df.replace(\"\", pd.NA)\n        if \"sample_accession\" in metadata_df.columns:\n            metadata_df = metadata_df.sort_values(\n                by=[\"study_accession\", \"sample_accession\"],\n                na_position=\"last\",\n            )\n        metadata_df = metadata_df.reset_index(drop=True)\n\n        if detailed and not metadata_df.empty:\n            try:\n                gse_bioproject_map = {}\n                for _, row in metadata_df.iterrows():\n                    gse_id = row.get(\"study_accession\")\n                    bioproject = row.get(\"bioproject\")\n                    if gse_id and str(gse_id).startswith(\"GSE\"):\n                        if bioproject and str(bioproject).startswith(\"PRJNA\"):\n                            gse_bioproject_map[gse_id] = bioproject\n\n                gse_srp_map = {}\n                all_fastq_data = []\n\n                for gse_id, bioproject in gse_bioproject_map.items():\n                    try:\n                        srp_list = self.bioproject_to_srp(bioproject)\n                        if srp_list:\n                            srp = srp_list[0]  # Use the first SRP found\n                            gse_srp_map[gse_id] = srp\n\n                            # Fetch SRA metadata and fastq URLs for this SRP\n                            try:\n                                sra_metadata_df = self.sra_metadata(srp)\n                                if not sra_metadata_df.empty:\n                                    fastq_df = self.fetch_ena_fastq(srp)\n                                    if not fastq_df.empty:\n                                        merged_df = sra_metadata_df.merge(\n                                            fastq_df, on=\"run_accession\", how=\"left\"\n                                        )\n                                        merged_df[\"gse_from_bioproject\"] = gse_id\n                                        merged_df[\"srp_from_bioproject\"] = srp\n                                        all_fastq_data.append(merged_df)\n                                time.sleep(self.sleep_time)\n                            except Exception:\n                                pass\n                    except Exception:\n                        pass\n\n                # If we found fastq data, merge it with the main metadata via GSM->SRX->SRR mapping\n                if all_fastq_data and sample_accessions:\n                    try:\n                        # Combine all fastq data\n                        combined_fastq = pd.concat(all_fastq_data, ignore_index=True)\n\n                        # Map GSM to SRX for matching\n                        gsm_to_srx_map = {}\n                        for gsm_id in sample_accessions:\n                            try:\n                                srx_df = self.gsm_to_srx(gsm_id)\n                                if (\n                                    not srx_df.empty\n                                    and \"experiment_accession\" in srx_df.columns\n                                ):\n                                    srx_list = (\n                                        srx_df[\"experiment_accession\"].dropna().tolist()\n                                    )\n                                    if srx_list:\n                                        gsm_to_srx_map[gsm_id] = srx_list[0]\n                                time.sleep(0.1)\n                            except Exception:\n                                pass\n\n                        # Add fastq columns to metadata_df\n                        fastq_cols = [\n                            col\n                            for col in combined_fastq.columns\n                            if \"fastq\" in col.lower() or \"ftp\" in col.lower()\n                        ]\n                        for col in fastq_cols:\n                            if col not in metadata_df.columns:\n                                metadata_df[col] = pd.NA\n\n                        # Create a mapping from SRX->run_accession->fastq URLs\n                        srx_to_fastq_map = {}\n                        for _, row in combined_fastq.iterrows():\n                            srx = row.get(\"experiment_accession\", pd.NA)\n                            run_acc = row.get(\"run_accession\", pd.NA)\n                            if not pd.isna(srx) and not pd.isna(run_acc):\n                                if srx not in srx_to_fastq_map:\n                                    srx_to_fastq_map[srx] = {}\n                                srx_to_fastq_map[srx][run_acc] = row\n\n                        # Merge fastq URLs based on GSM->SRX->fastq mapping\n                        for col in fastq_cols:\n\n                            def get_fastq_url(row):\n                                gsm = row.get(\"sample_accession\", pd.NA)\n                                if pd.isna(gsm):\n                                    return pd.NA\n                                # Get SRX for this GSM\n                                srx = gsm_to_srx_map.get(gsm, pd.NA)\n                                if pd.isna(srx) or srx not in srx_to_fastq_map:\n                                    return pd.NA\n                                # Get first run accession for this SRX\n                                run_accs = list(srx_to_fastq_map[srx].keys())\n                                if run_accs:\n                                    fastq_row = srx_to_fastq_map[srx][run_accs[0]]\n                                    return fastq_row.get(col, pd.NA)\n                                return pd.NA\n\n                            metadata_df[col] = metadata_df.apply(get_fastq_url, axis=1)\n                    except Exception:\n                        pass\n            except Exception:\n                pass\n\n        # Enrich metadata if requested\n        if enrich and not metadata_df.empty:\n            try:\n                from pysradb.metadata_enrichment import create_metadata_extractor\n\n                extractor = create_metadata_extractor(\n                    method=\"llm\", backend=enrich_backend\n                )\n                metadata_df = extractor.enrich_dataframe(\n                    metadata_df, text_column=None, prefix=\"guessed_\"\n                )\n            except Exception as e:\n                error_msg = str(e)\n                if \"Ollama is not installed or not running\" in error_msg:\n                    print(f\"Error: {error_msg}\")\n                    print(\n                        \"Metadata enrichment requires Ollama to be installed and running.\"\n                    )\n                    print(\n                        \"Please install Ollama from https://ollama.ai/ and follow these steps:\"\n                    )\n                    print(\"1. Start Ollama server: ollama serve\")\n                    print(\"2. Pull a model: ollama pull phi3\")\n                    print(\"3. Try again or use a different enrichment backend\")\n                    raise\n                else:\n                    print(f\"Warning: Enrichment failed: {e}\")\n\n        return metadata_df\n\n    def metadata(self, accession, **kwargs):\n        \"\"\"\n        Unified method to fetch metadata for SRA or GEO accessions.\n\n        Automatically detects accession type and calls appropriate method.\n\n        Args:\n            accession: ``SRP``/``GSE`` accession(s) - can be string or list\n            kwargs: Additional parameters passed to ``sra_metadata()`` or ``geo_metadata()``\n                     (e.g., ``detailed``, ``enrich``, ``enrich_backend``, ``sample_attribute``, etc.)\n\n        Returns:\n            DataFrame with metadata (enriched if enrich=True)\n\n        Examples:\n            >>> client = SRAweb()\n            >>> df = client.metadata(\"GSE286254\", detailed=True, enrich=True)\n            >>> df = client.metadata(\"SRP253951\", detailed=True, enrich=True)\n            >>> df = client.metadata([\"GSE286254\", \"GSE147507\"], enrich=True)\n        \"\"\"\n        if isinstance(accession, str):\n            accessions = [accession]\n        else:\n            accessions = accession\n\n        if not accessions:\n            return pd.DataFrame()\n\n        # Detect accession type from first accession\n        first_acc = accessions[0].upper()\n\n        if first_acc.startswith(\"GSE\"):\n            return self.geo_metadata(accession, **kwargs)\n        elif first_acc.startswith(\"SRP\"):\n            return self.sra_metadata(accession, **kwargs)\n        else:\n            raise ValueError(\n                f\"Unsupported accession type: {first_acc}. \"\n                \"Supported types: GSE (GEO Series), SRP (SRA Project)\"\n            )\n\n    def gse_to_gsm(self, gse, **kwargs):\n        if isinstance(gse, str):\n            gse = [gse]\n        gse_df = self.fetch_gds_results(gse, **kwargs)\n        gse_df = gse_df.rename(\n            columns={\n                \"accession\": \"experiment_alias\",\n                \"SRA\": \"experiment_accession\",\n                \"title\": \"experiment_title\",\n                \"summary\": \"sample_attribute\",\n            }\n        )\n        # TODO: Fix for multiple GSEs?\n        gse_df[\"study_alias\"] = \"\"\n        if len(gse) == 1:\n            study_alias = gse[0]\n        for index, row in gse_df.iterrows():\n            if row.entrytype == \"GSE\":\n                study_alias = row[\"experiment_accession\"]\n            # If GSM is ecnountered, apply it the\n            # previously encountered GSE\n            elif row.entrytype == \"GSM\":\n                gse_df.loc[index, \"study_alias\"] = study_alias\n        gse_df = gse_df[gse_df.entrytype == \"GSM\"]\n        if kwargs and kwargs[\"detailed\"] == True:\n            return gse_df\n        return gse_df[\n            [\"study_alias\", \"experiment_alias\", \"experiment_accession\"]\n        ].drop_duplicates()\n\n    def gse_to_srp(self, gse, **kwargs):\n        if isinstance(gse, str):\n            gse = [gse]\n        if not gse:  # Handle empty input\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n        gse_df = self.fetch_gds_results(gse, **kwargs)\n        if gse_df is None or gse_df.empty:  # Handle case where no results found\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n        gse_df = gse_df.rename(\n            columns={\"accession\": \"study_alias\", \"SRA\": \"study_accession\"}\n        )\n        gse_df_subset = None\n        if \"GSE\" in gse_df.entrytype.unique():\n            gse_df_subset = gse_df[gse_df.entrytype == \"GSE\"]\n            common_gses = set(gse_df.study_alias.unique()).intersection(gse)\n            if len(common_gses) < len(gse):\n                gse_df_subset = None\n            # Check if GSE entries have valid SRA accessions\n            # If any study_accessions are NaN, fall back to extracting from GSM entries\n            elif gse_df_subset[\"study_accession\"].isna().any():\n                gse_df_subset = None\n        if gse_df_subset is None:\n            # sometimes SRX ids are returned instead of an entire project\n            # see https://github.com/saketkc/pysradb/issues/186\n            # GSE: GSE209835; SRP =SRP388275\n            gse_df_subset_gse = gse_df[gse_df.entrytype == \"GSE\"]\n            # Include GSEs that are missing OR have NaN study_accessions\n            gses_without_srp = gse_df_subset_gse[\n                gse_df_subset_gse.study_accession.isna()\n            ].study_alias.tolist()\n            gse_of_interest = (\n                list(set(gse).difference(gse_df.study_alias.unique()))\n                + gses_without_srp\n            )\n            gse_df_subset_other = gse_df[gse_df.entrytype != \"GSE\"]\n            # Filter out NaN values from study_accession before converting to SRP\n            srx = gse_df_subset_other.study_accession.dropna().tolist()\n            srp_df = self.srx_to_srp(srx)\n            srp_unique = list(\n                set(srp_df.study_accession.unique()).difference(\n                    gse_df_subset_gse.study_accession.tolist()\n                )\n            )\n            # Handle mismatched lengths between GSEs and SRPs\n            # Create all combinations of GSE-SRP pairs\n            gse_srp_pairs = []\n            for gse_id in gse_of_interest:\n                for srp_id in srp_unique:\n                    gse_srp_pairs.append(\n                        {\"study_alias\": gse_id, \"study_accession\": srp_id}\n                    )\n\n            if gse_srp_pairs:\n                new_gse_df = pd.DataFrame(gse_srp_pairs)\n            else:\n                # If no pairs, create empty DataFrame with correct columns\n                new_gse_df = pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n            # Filter out GSE entries with NaN study_accession before concatenating\n            # as we've already created new pairs for them\n            gse_df_subset_gse_valid = gse_df_subset_gse[\n                gse_df_subset_gse.study_accession.notna()\n            ]\n            gse_df_subset = pd.concat([gse_df_subset_gse_valid, new_gse_df])\n        gse_df_subset = gse_df_subset.loc[gse_df_subset.study_alias.isin(gse)]\n        return gse_df_subset[[\"study_alias\", \"study_accession\"]].drop_duplicates()\n\n    def gsm_to_srp(self, gsm, **kwargs):\n        gsm_df = self.fetch_gds_results(gsm, **kwargs)\n        gsm_df = gsm_df[gsm_df.entrytype == \"GSE\"]\n        gsm_df = gsm_df.rename(\n            columns={\"accession\": \"experiment_alias\", \"SRA\": \"study_accession\"}\n        )\n        return gsm_df[[\"experiment_alias\", \"study_accession\"]].drop_duplicates()\n\n    def gsm_to_srr(self, gsm, **kwargs):\n        gsm_df = self.fetch_gds_results(gsm, **kwargs)\n        gsm_df = gsm_df.rename(\n            columns={\n                \"accession\": \"experiment_alias\",\n                \"SRA\": \"experiment_accession\",\n                \"title\": \"experiment_title\",\n                \"summary\": \"sample_attribute\",\n            }\n        )\n        gsm_df = gsm_df[gsm_df.entrytype == \"GSM\"]\n        srr_df = self.srx_to_srr(gsm_df.experiment_accession.tolist())\n        gsm_df = gsm_df.merge(srr_df, on=\"experiment_accession\")\n        return gsm_df[[\"experiment_alias\", \"run_accession\"]]\n\n    def gsm_to_srs(self, gsm, **kwargs):\n        \"\"\"Get SRS for a GSM\"\"\"\n        gsm_df = self.fetch_gds_results(gsm, **kwargs)\n        gsm_df = gsm_df[gsm_df.entrytype == \"GSM\"].rename(\n            columns={\"SRA\": \"experiment_accession\", \"accession\": \"experiment_alias\"}\n        )\n        srx = gsm_df.experiment_accession.tolist()\n        time.sleep(self.sleep_time)\n        srs_df = self.srx_to_srs(srx)\n        gsm_df = srs_df.merge(gsm_df, on=\"experiment_accession\")[\n            [\"experiment_alias\", \"sample_accession\"]\n        ]\n        return gsm_df.drop_duplicates()\n\n    def gsm_to_srx(self, gsm, **kwargs):\n        \"\"\"Get SRX for a GSM\"\"\"\n        if isinstance(gsm, str):\n            gsm = [gsm]\n        gsm_df = self.fetch_gds_results(gsm, **kwargs)\n        gsm_df = gsm_df[gsm_df.entrytype == \"GSM\"].rename(\n            columns={\"SRA\": \"experiment_accession\", \"accession\": \"experiment_alias\"}\n        )\n        gsm_df = gsm_df.loc[gsm_df[\"experiment_alias\"].isin(gsm)]\n        return gsm_df[[\"experiment_alias\", \"experiment_accession\"]].drop_duplicates()\n\n    def gsm_to_gse(self, gsm, **kwargs):\n        if isinstance(gsm, str):\n            gsm = [gsm]\n        if not gsm:  # Handle empty input\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n        gsm_df = self.fetch_gds_results(gsm, **kwargs)\n        if gsm_df is None or gsm_df.empty:  # Handle case where no results found\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n        # For GSM queries, we need to extract GSE IDs from the 'gse' column\n        # The entrytype will be 'GSM', not 'GSE'\n        gsm_entries = gsm_df[gsm_df.entrytype == \"GSM\"]\n\n        if gsm_entries.empty:\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n        # Extract GSE IDs from the 'gse' column and create result rows\n        results = []\n        for _, row in gsm_entries.iterrows():\n            gsm_id = row[\"accession\"]\n            gse_str = str(row.get(\"gse\", \"\"))\n\n            if gse_str and gse_str != \"nan\":\n                # Handle multiple GSE IDs separated by semicolon\n                gse_ids = [\n                    gse_id.strip() for gse_id in gse_str.split(\";\") if gse_id.strip()\n                ]\n                for gse_id in gse_ids:\n                    if gse_id.isdigit():\n                        # Add GSE prefix if it's just a number\n                        gse_id = f\"GSE{gse_id}\"\n                    results.append(\n                        {\n                            \"study_alias\": gse_id,\n                            \"study_accession\": row.get(\"SRA\", pd.NA),\n                        }\n                    )\n\n        if results:\n            result_df = pd.DataFrame(results)\n            return result_df[[\"study_alias\", \"study_accession\"]].drop_duplicates()\n        else:\n            return pd.DataFrame(columns=[\"study_alias\", \"study_accession\"])\n\n    def srp_to_gse(self, srp, **kwargs):\n        \"\"\"Get GSE for a SRP\"\"\"\n        srp_df = self.fetch_gds_results(srp, **kwargs)\n        if srp_df is None:\n            srp_df = pd.DataFrame(\n                {\"study_alias\": [], \"study_accession\": [], \"entrytype\": []}\n            )\n\n        srp_df = srp_df.rename(\n            columns={\"accession\": \"study_alias\", \"SRA\": \"study_accession\"}\n        )\n        srp_df_gse = srp_df[srp_df.entrytype == \"GSE\"]\n        missing_srp = list(set(srp).difference(srp_df_gse.study_accession.tolist()))\n        srp_df_nongse = srp_df[srp_df.entrytype != \"GSE\"]\n        if srp_df_nongse.shape[0] >= 1:\n            srp_df_nongse = pd.DataFrame(\n                {\n                    \"study_accession\": missing_srp,\n                    \"study_alias\": [pd.NA] * len(missing_srp),\n                    \"entrytpe\": [\"GSE\"] * len(missing_srp),\n                }\n            )\n        srp_df = pd.concat([srp_df_gse, srp_df_nongse])\n        return srp_df[[\"study_accession\", \"study_alias\"]].drop_duplicates()\n\n    def srp_to_srr(self, srp, **kwargs):\n        \"\"\"Get SRR for a SRP\"\"\"\n        srp_df = self.sra_metadata(srp, **kwargs)\n        return _order_first(srp_df, [\"study_accession\", \"run_accession\"])\n\n    def srp_to_srs(self, srp, **kwargs):\n        \"\"\"Get SRS for a SRP\"\"\"\n        srp_df = self.sra_metadata(srp, **kwargs)\n        return _order_first(srp_df, [\"study_accession\", \"sample_accession\"])\n\n    def srp_to_srx(self, srp, **kwargs):\n        \"\"\"Get SRX for a SRP\"\"\"\n        srp_df = self.sra_metadata(srp, **kwargs)\n        srp_df[\"study_accesssion\"] = srp\n        return _order_first(srp_df, [\"study_accession\", \"experiment_accession\"])\n\n    def srr_to_gsm(self, srr, **kwargs):\n        \"\"\"Get GSM for a SRR\"\"\"\n        if isinstance(srr, str):\n            srr = [srr]\n        srr_df = self.srr_to_srp(srr, detailed=True)\n        # remove NAs\n        srp = [x for x in srr_df.study_accession.tolist() if not x is pd.NA]\n        gse_df = self.fetch_gds_results(srp, **kwargs)\n        gse_df = gse_df[gse_df.entrytype == \"GSE\"].rename(\n            columns={\"SRA\": \"project_accession\", \"accession\": \"project_alias\"}\n        )\n        gsm_df = self.gse_to_gsm(gse_df.project_alias.tolist(), detailed=True)\n        srr_cols = list(\n            set(srr_df.columns.tolist()).difference(gsm_df.columns.tolist())\n        ) + [\"experiment_accession\"]\n        joined_df = gsm_df.merge(srr_df[srr_cols], on=\"experiment_accession\")\n        df = _order_first(joined_df, [\"run_accession\", \"experiment_alias\"])\n        df = df.loc[df[\"run_accession\"].isin(srr)]\n        return df\n\n    def srr_to_srp(self, srr, **kwargs):\n        \"\"\"Get SRP for a SRR\"\"\"\n        if isinstance(srr, str):\n            srr = [srr]\n        srr_df = self.sra_metadata(srr, **kwargs)\n        if kwargs and kwargs[\"detailed\"] == True:\n            return srr_df\n        srr_df = srr_df.loc[srr_df[\"run_accession\"].isin(srr)]\n        return _order_first(srr_df, [\"run_accession\", \"study_accession\"])\n\n    def srr_to_srs(self, srr, **kwargs):\n        \"\"\"Get SRS for a SRR\"\"\"\n        if isinstance(srr, str):\n            srr = [srr]\n        srr_df = self.sra_metadata(srr, **kwargs)\n        srr_df = srr_df.loc[srr_df[\"run_accession\"].isin(srr)]\n        return _order_first(srr_df, [\"run_accession\", \"sample_accession\"])\n\n    def srr_to_srx(self, srr, **kwargs):\n        \"\"\"Get SRX for a SRR\"\"\"\n        if isinstance(srr, str):\n            srr = [srr]\n        srr_df = self.sra_metadata(srr)\n        srr_df = srr_df.loc[srr_df[\"run_accession\"].isin(srr)]\n        return _order_first(srr_df, [\"run_accession\", \"experiment_accession\"])\n\n    def srs_to_gsm(self, srs, **kwargs):\n        \"\"\"Get GSM for a SRS\"\"\"\n        if isinstance(srs, str):\n            srs = [srs]\n        srx_df = self.srs_to_srx(srs)\n        time.sleep(self.sleep_time)\n        gsm_df = self.srx_to_gsm(srx_df.experiment_accession.tolist(), **kwargs)\n        srs_df = srx_df.merge(gsm_df, on=\"experiment_accession\")\n        srs_df = srs_df.loc[srs_df[\"sample_accession\"].isin(srs)]\n        return _order_first(srs_df, [\"sample_accession\", \"experiment_alias\"])\n\n    def srx_to_gsm(self, srx, **kwargs):\n        if isinstance(srx, str):\n            srx = [srx]\n        gsm_df = self.fetch_gds_results(srx, **kwargs)\n        gsm_df = gsm_df[gsm_df.entrytype == \"GSM\"].rename(\n            columns={\"SRA\": \"experiment_accession\", \"accession\": \"experiment_alias\"}\n        )\n        gsm_df = gsm_df.loc[gsm_df[\"experiment_accession\"].isin(srx)]\n        return gsm_df[[\"experiment_accession\", \"experiment_alias\"]].drop_duplicates()\n\n    def srs_to_srx(self, srs, **kwargs):\n        \"\"\"Get SRX for a SRS\"\"\"\n        srs_df = self.sra_metadata(srs, **kwargs)\n        return _order_first(srs_df, [\"sample_accession\", \"experiment_accession\"])\n\n    def srx_to_srp(self, srx, **kwargs):\n        \"\"\"Get SRP for a SRX\"\"\"\n        srx_df = self.sra_metadata(srx, **kwargs)\n        return _order_first(srx_df, [\"experiment_accession\", \"study_accession\"])\n\n    def srx_to_srr(self, srx, **kwargs):\n        \"\"\"Get SRR for a SRX\"\"\"\n        srx_df = self.sra_metadata(srx, **kwargs)\n        return _order_first(srx_df, [\"experiment_accession\", \"run_accession\"])\n\n    def srx_to_srs(self, srx, **kwargs):\n        \"\"\"Get SRS for a SRX\"\"\"\n        srx_df = self.sra_metadata(srx, **kwargs)\n        return _order_first(srx_df, [\"experiment_accession\", \"sample_accession\"])\n\n    def search(self, *args, **kwargs):\n        raise NotImplementedError(\"Search not yet implemented for Web\")\n\n    def fetch_bioproject_pmids(self, bioprojects):\n        \"\"\"Fetch PMIDs for given BioProject accessions\n\n        Parameters\n        ----------\n        bioprojects: list or str\n                    BioProject accession(s)\n\n        Returns\n        -------\n        bioproject_pmids: dict\n                         Mapping of BioProject to list of PMIDs\n        \"\"\"\n        if isinstance(bioprojects, str):\n            bioprojects = [bioprojects]\n\n        bioproject_pmids = {}\n        for bioproject in bioprojects:\n            if pd.isna(bioproject) or not bioproject:\n                bioproject_pmids[bioproject] = []\n                continue\n\n            try:\n                payload = self.efetch_params.copy()\n                payload = [param for param in payload if param[0] != \"retmode\"]\n                payload += [\n                    (\"db\", \"bioproject\"),\n                    (\"id\", bioproject),\n                    (\"retmode\", \"xml\"),\n                ]\n\n                request = requests.get(\n                    self.base_url[\"efetch\"], params=OrderedDict(payload)\n                )\n                xml_text = request.text.strip()\n\n                # Parse XML to extract Publication IDs\n                pmids = []\n                try:\n                    xml_dict = xmltodict.parse(\n                        xml_text, process_namespaces=False, dict_constructor=OrderedDict\n                    )\n\n                    # Navigate through the XML structure\n                    if \"RecordSet\" in xml_dict:\n                        records = xml_dict[\"RecordSet\"].get(\"DocumentSummary\", [])\n                        if not isinstance(records, list):\n                            records = [records]\n\n                        for record in records:\n                            project_descr = record.get(\"Project\", {}).get(\n                                \"ProjectDescr\", {}\n                            )\n                            publications = project_descr.get(\"Publication\", [])\n\n                            if not isinstance(publications, list):\n                                publications = [publications]\n\n                            for pub in publications:\n                                pub_id = pub.get(\"@id\", \"\")\n                                if pub_id and pub_id.isdigit():\n                                    pmids.append(pub_id)\n\n                except ExpatError:\n                    # XML parsing failed --> Look for PMID patterns in the raw text\n                    pmid_pattern = r'id=\"(\\d+)\"'\n                    matches = re.findall(pmid_pattern, xml_text)\n                    pmids = [\n                        match for match in matches if len(match) >= 7\n                    ]  # PMIDs are typically 7+ digits\n\n                # If no PMIDs found in bioproject XML, try searching PMC by bioproject ID\n                if not pmids:\n                    pmids = self._search_pmc_by_bioproject(bioproject)\n\n                bioproject_pmids[bioproject] = list(set(pmids))  # Remove duplicates\n                time.sleep(self.sleep_time)\n\n            except Exception as e:\n                warnings.warn(f\"Failed to fetch PMIDs for BioProject {bioproject}: {e}\")\n                bioproject_pmids[bioproject] = []\n\n        return bioproject_pmids\n\n    def srp_to_pmid(self, srp_accessions):\n        \"\"\"Get PMIDs associated with SRP accessions\n\n        Parameters\n        ----------\n        srp_accessions: list or str\n                       SRP accession(s)\n\n        Returns\n        -------\n        srp_pmid_df: pandas.DataFrame\n                    DataFrame with SRP accessions and associated PMIDs\n        \"\"\"\n        if isinstance(srp_accessions, str):\n            srp_accessions = [srp_accessions]\n\n        # Get metadata to extract BioProject information\n        metadata_df = self.sra_metadata(srp_accessions)\n        if metadata_df is None or metadata_df.empty:\n            return pd.DataFrame(columns=[\"srp_accession\", \"bioproject\", \"pmid\"])\n\n        # Try to get PMIDs via BioProject first\n        unique_bioprojects = metadata_df[\"bioproject\"].dropna().unique().tolist()\n        bioproject_pmids = self.fetch_bioproject_pmids(unique_bioprojects)\n\n        # If no BioProject PMIDs found, try fallback search\n        external_pmids = []\n        if not any(pmids for pmids in bioproject_pmids.values()):\n            external_pmids = self._search_fallback_pmids(srp_accessions)\n\n        # Build results - one row per unique SRP accession\n        results = []\n        for _, row in metadata_df.iterrows():\n            srp_acc = self._extract_sra_accession(row)\n            bioproject = row.get(\"bioproject\", \"\")\n\n            # Get PMIDs (BioProject takes priority over external)\n            pmids = bioproject_pmids.get(bioproject, [])\n            if not pmids and external_pmids:\n                pmids = external_pmids\n\n            # Add result with smallest PMID (if any found)\n            smallest_pmid = self._get_smallest_pmid(pmids) if pmids else pd.NA\n            results.append(\n                {\n                    \"srp_accession\": srp_acc,\n                    \"bioproject\": bioproject,\n                    \"pmid\": smallest_pmid,\n                }\n            )\n\n        return pd.DataFrame(results).drop_duplicates()\n\n    def _search_fallback_pmids(self, srp_accessions):\n        \"\"\"Search for PMIDs using fallback strategies (external sources + direct SRA search + GSE search)\"\"\"\n        try:\n            original_sleep = self.sleep_time\n            self.sleep_time = max(0.1, self.sleep_time * 0.5)\n\n            # Strategy 1: Search via external source identifiers\n            # Example: ERP018009\n            detailed_metadata = self.sra_metadata(\n                srp_accessions, detailed=True, include_pmids=False\n            )\n            if detailed_metadata is not None and not detailed_metadata.empty:\n                if external_sources := self.extract_external_sources(detailed_metadata):\n                    pmids = self.search_pmc_for_external_sources([external_sources[0]])\n                    if pmids:\n                        return pmids\n\n                # Strategy 2: Search via GSE identifiers extracted from metadata\n                # Example: GSE253406 --> SRP484103\n                gse_pmids = self._search_gse_gsm_pmids(\n                    detailed_metadata, srp_accessions\n                )\n                if gse_pmids:\n                    return gse_pmids\n\n            # Strategy 3: Direct SRP ID search\n            # Example: SRP047086\n            pmids = self.search_pmc_for_external_sources(srp_accessions)\n            return pmids\n\n        except Exception as e:\n            return []\n        finally:\n            self.sleep_time = original_sleep\n\n    def _extract_sra_accession(self, row):\n        \"\"\"Extract SRA accession from metadata row\"\"\"\n        return row.get(\n            \"study_accession\",\n            row.get(\n                \"run_accession\",\n                row.get(\"experiment_accession\", row.get(\"sample_accession\", \"\")),\n            ),\n        )\n\n    def _get_smallest_pmid(self, pmids):\n        \"\"\"Get the numerically smallest PMID from a list\"\"\"\n        if not pmids:\n            return pd.NA\n\n        # Convert to integers for proper numeric sorting\n        pmid_ints = []\n        for pmid in pmids:\n            try:\n                pmid_ints.append(int(pmid))\n            except ValueError:\n                pmid_ints.append(pmid)  # Keep non-numeric as-is\n\n        return str(min(pmid_ints))\n\n    def extract_external_sources(self, metadata_df):\n        \"\"\"Extract external source identifiers from SRA metadata\n\n        Parameters\n        ----------\n        metadata_df: pandas.DataFrame\n                    DataFrame containing SRA metadata\n\n        Returns\n        -------\n        external_sources: list\n                         List of external source identifiers found\n        \"\"\"\n        external_sources = []\n\n        patterns = [\n            r\"E-MTAB-\\d+\",  # ArrayExpress\n            r\"GSE\\d+\",  # GEO Series\n            r\"E-GEOD-\\d+\",  # GEO in ArrayExpress\n            r\"E-MEXP-\\d+\",  # MEXP in ArrayExpress\n            r\"E-TABM-\\d+\",  # TABM in ArrayExpress\n        ]\n\n        # Fields that commonly contain external source identifiers\n        source_fields = [\"run_alias\", \"submitter id\", \"sample name\", \"experiment_alias\"]\n\n        for field in source_fields:\n            if field in metadata_df.columns:\n                values = metadata_df[field].dropna().unique()\n                for value in values:\n                    value_str = str(value)\n                    for pattern in patterns:\n                        matches = re.findall(pattern, value_str)\n                        external_sources.extend(\n                            match for match in matches if match not in external_sources\n                        )\n\n        return external_sources\n\n    def _search_gse_gsm_pmids(self, metadata_df, sra_accessions):\n        \"\"\"Search for PMIDs using GSE identifiers from BioProject and SRP conversion\n\n        Parameters\n        ----------\n        metadata_df: pandas.DataFrame\n                    Detailed metadata DataFrame\n        sra_accessions: list\n                       List of SRA accessions being searched\n\n        Returns\n        -------\n        pmids: list\n              List of PMIDs found via GSE search\n        \"\"\"\n        import time\n\n        gse_identifiers = []\n\n        # Strategy 1: BioProject to GSE conversion via NCBI search\n        if \"bioproject\" in metadata_df.columns:\n            unique_bioprojects = metadata_df[\"bioproject\"].dropna().unique()\n            for bioproject in unique_bioprojects[\n                :3\n            ]:  # Limit to avoid too many requests\n                try:\n                    gse_ids = self._bioproject_to_gse(bioproject)\n                    gse_identifiers.extend(gse_ids)\n                    time.sleep(self.sleep_time)  # Rate limiting\n                except Exception:\n                    pass\n\n        # Strategy 2: SRP to GSE conversion via NCBI ELink\n        for sra_acc in sra_accessions:\n            if sra_acc.startswith(\"SRP\"):\n                try:\n                    gse_ids = self._srp_to_gse_via_elink(sra_acc)\n                    gse_identifiers.extend(gse_ids)\n                    time.sleep(self.sleep_time)  # Rate limiting\n                except Exception:\n                    pass\n\n        # Strategy 3: Try existing pysradb SRP to GSE conversion\n        for sra_acc in sra_accessions:\n            if sra_acc.startswith(\"SRP\"):\n                try:\n                    gse_df = self.srp_to_gse(sra_acc)\n                    if not gse_df.empty and \"experiment_alias\" in gse_df.columns:\n                        gse_values = gse_df[\"experiment_alias\"].dropna().astype(str)\n                        for gse_val in gse_values:\n                            if gse_val.startswith(\"GSE\"):\n                                gse_identifiers.append(gse_val)\n                except Exception:\n                    pass\n\n        # Remove duplicates and search PMC for GSE identifiers\n        unique_gse_ids = list(set(gse_identifiers))\n\n        if unique_gse_ids:\n            pmids = self.search_pmc_for_external_sources(unique_gse_ids)\n            return pmids\n\n        return []\n\n    def _bioproject_to_gse(self, bioproject):\n        \"\"\"Convert BioProject ID to GSE ID via NCBI search\n\n        Parameters\n        ----------\n        bioproject: str\n                   BioProject ID (e.g., 'PRJNA1065472')\n\n        Returns\n        -------\n        gse_ids: list\n                List of GSE IDs found\n        \"\"\"\n        import requests\n\n        gse_ids = []\n        try:\n            search_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n            search_params = {\n                \"db\": \"gds\",\n                \"term\": f\"{bioproject}[BioProject]\",\n                \"retmode\": \"json\",\n                \"retmax\": \"10\",\n            }\n\n            response = requests.get(search_url, params=search_params, timeout=30)\n            response.raise_for_status()\n            result = response.json()\n            geo_uids = result[\"esearchresult\"][\"idlist\"]\n\n            if geo_uids:\n                # Get summary to find GSE IDs\n                summary_url = (\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n                )\n                summary_params = {\n                    \"db\": \"gds\",\n                    \"id\": \",\".join(geo_uids),\n                    \"retmode\": \"json\",\n                }\n\n                summary_response = requests.get(\n                    summary_url, params=summary_params, timeout=30\n                )\n                summary_response.raise_for_status()\n                summary_result = summary_response.json()\n\n                for uid in geo_uids:\n                    if uid in summary_result[\"result\"]:\n                        record = summary_result[\"result\"][uid]\n                        accession = record.get(\"accession\", \"\")\n                        if accession.startswith(\"GSE\"):\n                            gse_ids.append(accession)\n\n        except Exception:\n            pass\n\n        return gse_ids\n\n    def _srp_to_gse_via_elink(self, srp_id):\n        \"\"\"Convert SRP ID to GSE ID via NCBI ELink\n\n        Parameters\n        ----------\n        srp_id: str\n               SRP ID (e.g., 'SRP484103')\n\n        Returns\n        -------\n        gse_ids: list\n                List of GSE IDs found\n        \"\"\"\n        import requests\n\n        gse_ids = []\n        try:\n            # First, search for the SRP in SRA database to get UIDs\n            search_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n            search_params = {\n                \"db\": \"sra\",\n                \"term\": srp_id,\n                \"retmode\": \"json\",\n                \"retmax\": \"5\",\n            }\n\n            response = requests.get(search_url, params=search_params, timeout=30)\n            response.raise_for_status()\n            result = response.json()\n            sra_uids = result[\"esearchresult\"][\"idlist\"]\n\n            if sra_uids:\n                # Use ELink to find related GEO records\n                elink_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi\"\n                elink_params = {\n                    \"dbfrom\": \"sra\",\n                    \"db\": \"gds\",\n                    \"id\": sra_uids[0],  # Use first UID\n                    \"retmode\": \"json\",\n                }\n\n                elink_response = requests.get(\n                    elink_url, params=elink_params, timeout=30\n                )\n                elink_response.raise_for_status()\n                elink_result = elink_response.json()\n\n                if \"linksets\" in elink_result:\n                    for linkset in elink_result[\"linksets\"]:\n                        if \"linksetdbs\" in linkset:\n                            for linksetdb in linkset[\"linksetdbs\"]:\n                                if linksetdb[\"dbto\"] == \"gds\":\n                                    geo_uids = linksetdb[\"links\"]\n\n                                    if geo_uids:\n                                        # Get summary to find GSE IDs\n                                        summary_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n                                        summary_params = {\n                                            \"db\": \"gds\",\n                                            \"id\": \",\".join(geo_uids),\n                                            \"retmode\": \"json\",\n                                        }\n\n                                        summary_response = requests.get(\n                                            summary_url,\n                                            params=summary_params,\n                                            timeout=30,\n                                        )\n                                        summary_response.raise_for_status()\n                                        summary_result = summary_response.json()\n\n                                        for uid in geo_uids:\n                                            if uid in summary_result[\"result\"]:\n                                                record = summary_result[\"result\"][uid]\n                                                accession = record.get(\"accession\", \"\")\n                                                if accession.startswith(\"GSE\"):\n                                                    gse_ids.append(accession)\n\n        except Exception:\n            pass\n\n        return gse_ids\n\n    def _search_pmc_by_bioproject(self, bioproject_id):\n        \"\"\"Search PubMed Central for PMIDs using BioProject accession ID\n\n        This provides a fallback mechanism when the BioProject XML doesn't contain\n        publication metadata but the research has been published and is cited in PMC.\n\n        Parameters\n        ----------\n        bioproject_id: str\n                      BioProject accession ID (e.g., PRJEB39301, PRJNA123456)\n\n        Returns\n        -------\n        pmids: list\n              List of PMIDs found associated with the bioproject\n        \"\"\"\n        try:\n            search_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n            search_params = {\n                \"db\": \"pmc\",\n                \"term\": bioproject_id,\n                \"retmode\": \"json\",\n                \"retmax\": \"10\",\n            }\n\n            response = requests.get(search_url, params=search_params, timeout=60)\n            response.raise_for_status()\n            result = response.json()\n\n            pmc_ids = result.get(\"esearchresult\", {}).get(\"idlist\", [])\n            if not pmc_ids:\n                return []\n\n            # Get primary PMIDs for each PMC article\n            summary_url = \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n            summary_params = {\n                \"db\": \"pmc\",\n                \"id\": \",\".join(pmc_ids),\n                \"retmode\": \"json\",\n            }\n\n            summary_response = requests.get(\n                summary_url, params=summary_params, timeout=60\n            )\n            summary_result = summary_response.json()\n\n            pmids = []\n            # Extract primary PMID for each PMC article\n            for pmc_id in pmc_ids:\n                if pmc_id in summary_result.get(\"result\", {}):\n                    article = summary_result[\"result\"][pmc_id]\n                    articleids = article.get(\"articleids\", [])\n\n                    # Find the primary PMID\n                    for aid in articleids:\n                        if aid.get(\"idtype\") == \"pmid\":\n                            primary_pmid = aid.get(\"value\")\n                            if primary_pmid and primary_pmid not in pmids:\n                                pmids.append(primary_pmid)\n                            break\n\n            return pmids\n\n        except Exception as e:\n            # Silently fail and return empty list for fallback mechanism\n            return []\n\n    def search_pmc_for_external_sources(self, external_sources):\n        \"\"\"Search PubMed Central for PMIDs using external source identifiers\n\n        Parameters\n        ----------\n        external_sources: list\n                         List of external source identifiers\n\n        Returns\n        -------\n        pmids: list\n              List of PMIDs found\n        \"\"\"\n        if not external_sources:\n            return []\n\n        all_pmids = []\n\n        for source in external_sources:\n            try:\n                search_url = (\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi\"\n                )\n                search_params = {\n                    \"db\": \"pmc\",\n                    \"term\": source,\n                    \"retmode\": \"json\",\n                    \"retmax\": \"10\",\n                }\n\n                response = requests.get(search_url, params=search_params, timeout=60)\n                response.raise_for_status()\n                result = response.json()\n\n                pmc_ids = result[\"esearchresult\"][\"idlist\"]\n                if not pmc_ids:\n                    continue\n\n                # Get primary PMIDs for each PMC article\n                summary_url = (\n                    \"https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi\"\n                )\n                summary_params = {\n                    \"db\": \"pmc\",\n                    \"id\": \",\".join(pmc_ids),\n                    \"retmode\": \"json\",\n                }\n\n                summary_response = requests.get(\n                    summary_url, params=summary_params, timeout=60\n                )\n                summary_result = summary_response.json()\n\n                # Extract primary PMID for each PMC article\n                for pmc_id in pmc_ids:\n                    if pmc_id in summary_result[\"result\"]:\n                        article = summary_result[\"result\"][pmc_id]\n                        articleids = article.get(\"articleids\", [])\n\n                        # Find the primary PMID\n                        for aid in articleids:\n                            if aid.get(\"idtype\") == \"pmid\":\n                                primary_pmid = aid.get(\"value\")\n                                if primary_pmid and primary_pmid not in all_pmids:\n                                    all_pmids.append(primary_pmid)\n                                break\n\n                time.sleep(self.sleep_time)  # Rate limiting\n\n            except Exception as e:\n                continue\n\n        return list(set(all_pmids))  # Remove duplicates\n\n    def sra_to_pmid(self, sra_accessions):\n        \"\"\"Get PMIDs for SRA accessions (backward compatibility wrapper)\n\n        Parameters\n        ----------\n        sra_accessions: list or str\n                       SRA accession(s) - can be SRP, SRR, SRX, or SRS\n\n        Returns\n        -------\n        sra_pmid_df: pandas.DataFrame\n                    DataFrame with SRA accessions and associated PMIDs\n        \"\"\"\n        # For SRP accessions, use the main method\n        if isinstance(sra_accessions, str):\n            if sra_accessions.startswith(\"SRP\"):\n                return self.srp_to_pmid(sra_accessions)\n        elif isinstance(sra_accessions, list):\n            # If all are SRP accessions, use main method\n            if all(acc.startswith(\"SRP\") for acc in sra_accessions):\n                return self.srp_to_pmid(sra_accessions)\n\n        # For other SRA accessions, convert to SRP first if possible\n        # This is a simplified implementation for backward compatibility\n        return self.srp_to_pmid(sra_accessions)\n\n    def srr_to_pmid(self, srr):\n        \"\"\"Get PMIDs for Run Accessions (SRR)\"\"\"\n        return self.sra_to_pmid(srr)\n\n    def srx_to_pmid(self, srx):\n        \"\"\"Get PMIDs for Experiment Accessions (SRX)\"\"\"\n        return self.sra_to_pmid(srx)\n\n    def srs_to_pmid(self, srs):\n        \"\"\"Get PMIDs for Sample Accessions (SRS)\"\"\"\n        return self.sra_to_pmid(srs)\n\n    def gse_to_pmid(self, gse_accessions):\n        \"\"\"Get PMIDs for GSE accessions by searching PubMed Central\n\n        Parameters\n        ----------\n        gse_accessions: list or str\n                       GSE accession(s)\n\n        Returns\n        -------\n        gse_pmid_df: pandas.DataFrame\n                    DataFrame with GSE accessions and associated PMIDs\n        \"\"\"\n        if isinstance(gse_accessions, str):\n            gse_accessions = [gse_accessions]\n\n        results = []\n        for gse_acc in gse_accessions:\n            pmids = self.search_pmc_for_external_sources([gse_acc])\n            smallest_pmid = self._get_smallest_pmid(pmids) if pmids else pd.NA\n\n            results.append(\n                {\n                    \"gse_accession\": gse_acc,\n                    \"pmid\": smallest_pmid,\n                }\n            )\n\n        return pd.DataFrame(results)\n\n    def doi_to_pmid(self, dois):\n        \"\"\"Convert DOI(s) to PMID(s)\n\n        Parameters\n        ----------\n        dois: list or str\n             DOI(s)\n\n        Returns\n        -------\n        doi_pmid_mapping: dict\n                         Mapping of DOI to PMID\n        \"\"\"\n        if isinstance(dois, str):\n            dois = [dois]\n\n        doi_pmid_mapping = {}\n\n        for doi in dois:\n            try:\n                search_url = self.base_url[\"esearch\"]\n                search_params = {\n                    \"db\": \"pubmed\",\n                    \"term\": f\"{doi}[DOI]\",\n                    \"retmode\": \"json\",\n                }\n\n                response = requests.get(search_url, params=search_params, timeout=60)\n                response.raise_for_status()\n                result = response.json()\n\n                id_list = result.get(\"esearchresult\", {}).get(\"idlist\", [])\n                if id_list:\n                    doi_pmid_mapping[doi] = id_list[0]\n                else:\n                    doi_pmid_mapping[doi] = None\n\n                time.sleep(self.sleep_time)\n\n            except requests.RequestException as e:\n                warnings.warn(f\"Network error while getting PMID for DOI {doi}: {e}\")\n                doi_pmid_mapping[doi] = None\n            except ValueError as e:\n                warnings.warn(\n                    f\"Value error while processing response for DOI {doi}: {e}\"\n                )\n                doi_pmid_mapping[doi] = None\n\n        return doi_pmid_mapping\n\n    def pmid_to_pmc(self, pmids):\n        \"\"\"Convert PMID(s) to PMC ID(s)\n\n        Parameters\n        ----------\n        pmids: list or str\n              PMID(s)\n\n        Returns\n        -------\n        pmid_pmc_mapping: dict\n                         Mapping of PMID to PMC ID\n        \"\"\"\n        if isinstance(pmids, str):\n            pmids = [pmids]\n\n        pmid_pmc_mapping = {}\n\n        for pmid in pmids:\n            try:\n                summary_url = self.base_url[\"esummary\"]\n                summary_params = {\n                    \"db\": \"pubmed\",\n                    \"id\": pmid,\n                    \"retmode\": \"json\",\n                }\n\n                response = requests.get(summary_url, params=summary_params, timeout=60)\n                response.raise_for_status()\n                result = response.json()\n\n                # Extract PMC ID from articleids\n                if str(pmid) in result.get(\"result\", {}):\n                    article = result[\"result\"][str(pmid)]\n                    articleids = article.get(\"articleids\", [])\n\n                    for aid in articleids:\n                        if aid.get(\"idtype\") == \"pmc\":\n                            pmc_id = aid.get(\"value\")\n                            pmid_pmc_mapping[pmid] = pmc_id\n                            break\n\n                time.sleep(self.sleep_time)\n\n            except Exception as e:\n                warnings.warn(f\"Failed to get PMC ID for PMID {pmid}: {e}\")\n                pmid_pmc_mapping[pmid] = None\n\n        return pmid_pmc_mapping\n\n    def fetch_pmc_fulltext(self, pmc_id):\n        \"\"\"Fetch full text from PMC article\n\n        Parameters\n        ----------\n        pmc_id: str\n               PMC ID (can be with or without 'PMC' prefix)\n\n        Returns\n        -------\n        fulltext: str\n                 Full text of the article, or None if unavailable\n        \"\"\"\n        # Ensure PMC ID has the PMC prefix\n        if not pmc_id.startswith(\"PMC\"):\n            pmc_id = f\"PMC{pmc_id}\"\n\n        try:\n            fetch_url = self.base_url[\"efetch\"]\n            fetch_params = {\"db\": \"pmc\", \"id\": pmc_id, \"retmode\": \"xml\"}\n\n            response = requests.get(fetch_url, params=fetch_params, timeout=60)\n            response.raise_for_status()\n\n            time.sleep(self.sleep_time)\n            return response.text\n\n        except Exception as e:\n            warnings.warn(f\"Failed to fetch full text for {pmc_id}: {e}\")\n            return None\n\n    def extract_identifiers_from_text(self, text):\n        \"\"\"Extract GSE, PRJNA, SRP, and other identifiers from text\n\n        Parameters\n        ----------\n        text: str\n             Text to search for identifiers\n\n        Returns\n        -------\n        identifiers: dict\n                    Dictionary with lists of found identifiers by type\n        \"\"\"\n        if not text:\n            return {\n                \"gse\": [],\n                \"prjna\": [],\n                \"srp\": [],\n                \"srr\": [],\n                \"srx\": [],\n                \"srs\": [],\n            }\n\n        # Define patterns for different identifier types\n        patterns = {\n            \"gse\": r\"GSE\\d+\",\n            \"prjna\": r\"PRJNA\\d+\",\n            \"srp\": r\"SRP\\d+\",\n            \"srr\": r\"SRR\\d+\",\n            \"srx\": r\"SRX\\d+\",\n            \"srs\": r\"SRS\\d+\",\n        }\n\n        identifiers = {}\n        for id_type, pattern in patterns.items():\n            matches = re.findall(pattern, text, re.IGNORECASE)\n            # Convert to uppercase and remove duplicates\n            identifiers[id_type] = sorted(list(set([m.upper() for m in matches])))\n\n        return identifiers\n\n    def pmc_to_identifiers(self, pmc_ids, convert_missing=True):\n        \"\"\"Extract database identifiers from PMC articles\n\n        Parameters\n        ----------\n        pmc_ids: list or str\n                PMC ID(s) (can be with or without 'PMC' prefix)\n        convert_missing: bool\n                        If True, automatically convert GSE↔SRP when one is found but not the other\n                        Default: True\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with PMC IDs and extracted identifiers\n        \"\"\"\n        if isinstance(pmc_ids, str):\n            pmc_ids = [pmc_ids]\n\n        results = []\n\n        for pmc_id in pmc_ids:\n            # Fetch full text\n            fulltext = self.fetch_pmc_fulltext(pmc_id)\n\n            if fulltext:\n                # Extract identifiers\n                identifiers = self.extract_identifiers_from_text(fulltext)\n\n                if convert_missing:\n                    # If we found GSE IDs but no SRP IDs, convert GSE to SRP\n                    if identifiers[\"gse\"] and not identifiers[\"srp\"]:\n                        try:\n                            for gse_id in identifiers[\"gse\"]:\n                                gse_srp_df = self.gse_to_srp(gse_id)\n                                if (\n                                    not gse_srp_df.empty\n                                    and \"study_accession\" in gse_srp_df.columns\n                                ):\n                                    srp_values = (\n                                        gse_srp_df[\"study_accession\"].dropna().tolist()\n                                    )\n                                    identifiers[\"srp\"].extend(\n                                        [str(x) for x in srp_values if not pd.isna(x)]\n                                    )\n                            identifiers[\"srp\"] = sorted(list(set(identifiers[\"srp\"])))\n                            time.sleep(self.sleep_time)\n                        except Exception:\n                            pass\n\n                    # If we found SRP IDs but no GSE IDs, convert SRP to GSE\n                    elif identifiers[\"srp\"] and not identifiers[\"gse\"]:\n                        try:\n                            for srp_id in identifiers[\"srp\"]:\n                                srp_gse_df = self.srp_to_gse(srp_id)\n                                if (\n                                    not srp_gse_df.empty\n                                    and \"study_alias\" in srp_gse_df.columns\n                                ):\n                                    gse_values = (\n                                        srp_gse_df[\"study_alias\"].dropna().tolist()\n                                    )\n                                    identifiers[\"gse\"].extend(\n                                        [str(x) for x in gse_values if not pd.isna(x)]\n                                    )\n                            identifiers[\"gse\"] = sorted(\n                                list(set(identifiers[\"gse\"]))\n                            )  # Remove duplicates\n                            time.sleep(self.sleep_time)\n                        except Exception:\n                            pass  # If conversion fails, just keep what we found\n\n                # Extract PRJNA from SRP metadata if we have SRP IDs\n                if identifiers[\"srp\"] and not identifiers[\"prjna\"]:\n                    try:\n                        for srp_id in identifiers[\"srp\"]:\n                            srp_metadata = self.sra_metadata(srp_id)\n                            if srp_metadata is not None and not srp_metadata.empty:\n                                if \"bioproject\" in srp_metadata.columns:\n                                    bioproject_values = (\n                                        srp_metadata[\"bioproject\"]\n                                        .dropna()\n                                        .unique()\n                                        .tolist()\n                                    )\n                                    identifiers[\"prjna\"].extend(\n                                        [\n                                            str(x)\n                                            for x in bioproject_values\n                                            if not pd.isna(x)\n                                        ]\n                                    )\n                        identifiers[\"prjna\"] = sorted(list(set(identifiers[\"prjna\"])))\n                        time.sleep(self.sleep_time)\n                    except Exception:\n                        pass\n\n                results.append(\n                    {\n                        \"pmc_id\": (\n                            pmc_id if pmc_id.startswith(\"PMC\") else f\"PMC{pmc_id}\"\n                        ),\n                        \"gse_ids\": (\n                            \",\".join(identifiers[\"gse\"])\n                            if identifiers[\"gse\"]\n                            else pd.NA\n                        ),\n                        \"prjna_ids\": (\n                            \",\".join(identifiers[\"prjna\"])\n                            if identifiers[\"prjna\"]\n                            else pd.NA\n                        ),\n                        \"srp_ids\": (\n                            \",\".join(identifiers[\"srp\"])\n                            if identifiers[\"srp\"]\n                            else pd.NA\n                        ),\n                        \"srr_ids\": (\n                            \",\".join(identifiers[\"srr\"])\n                            if identifiers[\"srr\"]\n                            else pd.NA\n                        ),\n                        \"srx_ids\": (\n                            \",\".join(identifiers[\"srx\"])\n                            if identifiers[\"srx\"]\n                            else pd.NA\n                        ),\n                        \"srs_ids\": (\n                            \",\".join(identifiers[\"srs\"])\n                            if identifiers[\"srs\"]\n                            else pd.NA\n                        ),\n                    }\n                )\n            else:\n                results.append(\n                    {\n                        \"pmc_id\": (\n                            pmc_id if pmc_id.startswith(\"PMC\") else f\"PMC{pmc_id}\"\n                        ),\n                        \"gse_ids\": pd.NA,\n                        \"prjna_ids\": pd.NA,\n                        \"srp_ids\": pd.NA,\n                        \"srr_ids\": pd.NA,\n                        \"srx_ids\": pd.NA,\n                        \"srs_ids\": pd.NA,\n                    }\n                )\n\n        return pd.DataFrame(results)\n\n    def pmid_to_identifiers(self, pmids):\n        \"\"\"Extract database identifiers from PubMed articles via PMC\n\n        Parameters\n        ----------\n        pmids: list or str\n              PMID(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with PMIDs, PMC IDs, and extracted identifiers\n        \"\"\"\n        if isinstance(pmids, str):\n            pmids = [pmids]\n\n        # First convert PMIDs to PMC IDs\n        pmid_pmc_mapping = self.pmid_to_pmc(pmids)\n\n        results = []\n\n        for pmid, pmc_id in pmid_pmc_mapping.items():\n            if pmc_id:\n                # Get identifiers from PMC\n                pmc_results = self.pmc_to_identifiers([pmc_id])\n\n                if not pmc_results.empty:\n                    result = pmc_results.iloc[0].to_dict()\n                    result[\"pmid\"] = pmid\n                    # Reorder columns to have pmid first\n                    result = {\n                        \"pmid\": result[\"pmid\"],\n                        \"pmc_id\": result[\"pmc_id\"],\n                        \"gse_ids\": result[\"gse_ids\"],\n                        \"prjna_ids\": result[\"prjna_ids\"],\n                        \"srp_ids\": result[\"srp_ids\"],\n                        \"srr_ids\": result[\"srr_ids\"],\n                        \"srx_ids\": result[\"srx_ids\"],\n                        \"srs_ids\": result[\"srs_ids\"],\n                    }\n                    results.append(result)\n                else:\n                    results.append(\n                        {\n                            \"pmid\": pmid,\n                            \"pmc_id\": pmc_id,\n                            \"gse_ids\": pd.NA,\n                            \"prjna_ids\": pd.NA,\n                            \"srp_ids\": pd.NA,\n                            \"srr_ids\": pd.NA,\n                            \"srx_ids\": pd.NA,\n                            \"srs_ids\": pd.NA,\n                        }\n                    )\n            else:\n                # No PMC ID available\n                results.append(\n                    {\n                        \"pmid\": pmid,\n                        \"pmc_id\": pd.NA,\n                        \"gse_ids\": pd.NA,\n                        \"prjna_ids\": pd.NA,\n                        \"srp_ids\": pd.NA,\n                        \"srr_ids\": pd.NA,\n                        \"srx_ids\": pd.NA,\n                        \"srs_ids\": pd.NA,\n                    }\n                )\n\n        return pd.DataFrame(results)\n\n    def pmid_to_gse(self, pmids):\n        \"\"\"Get GSE identifiers from PMID(s)\n\n        Parameters\n        ----------\n        pmids: list or str\n              PMID(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with PMIDs and GSE identifiers\n        \"\"\"\n        full_results = self.pmid_to_identifiers(pmids)\n        return full_results[[\"pmid\", \"pmc_id\", \"gse_ids\"]]\n\n    def pmid_to_srp(self, pmids):\n        \"\"\"Get SRP identifiers from PMID(s)\n\n        Parameters\n        ----------\n        pmids: list or str\n              PMID(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with PMIDs and SRP identifiers\n        \"\"\"\n        full_results = self.pmid_to_identifiers(pmids)\n        return full_results[[\"pmid\", \"pmc_id\", \"srp_ids\"]]\n\n    def doi_to_identifiers(self, dois):\n        \"\"\"Extract database identifiers from articles via DOI\n\n        Parameters\n        ----------\n        dois: list or str\n             DOI(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with DOIs, PMIDs, PMC IDs, and extracted identifiers\n        \"\"\"\n        if isinstance(dois, str):\n            dois = [dois]\n\n        doi_pmid_mapping = self.doi_to_pmid(dois)\n\n        results = []\n\n        for doi, pmid in doi_pmid_mapping.items():\n            if pmid:\n                pmid_results = self.pmid_to_identifiers([pmid])\n\n                if not pmid_results.empty:\n                    result = pmid_results.iloc[0].to_dict()\n                    result[\"doi\"] = doi\n                    result = {\n                        \"doi\": result[\"doi\"],\n                        \"pmid\": result[\"pmid\"],\n                        \"pmc_id\": result[\"pmc_id\"],\n                        \"gse_ids\": result[\"gse_ids\"],\n                        \"prjna_ids\": result[\"prjna_ids\"],\n                        \"srp_ids\": result[\"srp_ids\"],\n                        \"srr_ids\": result[\"srr_ids\"],\n                        \"srx_ids\": result[\"srx_ids\"],\n                        \"srs_ids\": result[\"srs_ids\"],\n                    }\n                    results.append(result)\n                else:\n                    results.append(\n                        {\n                            \"doi\": doi,\n                            \"pmid\": pmid,\n                            \"pmc_id\": pd.NA,\n                            \"gse_ids\": pd.NA,\n                            \"prjna_ids\": pd.NA,\n                            \"srp_ids\": pd.NA,\n                            \"srr_ids\": pd.NA,\n                            \"srx_ids\": pd.NA,\n                            \"srs_ids\": pd.NA,\n                        }\n                    )\n            else:\n                # No PMID available\n                results.append(\n                    {\n                        \"doi\": doi,\n                        \"pmid\": pd.NA,\n                        \"pmc_id\": pd.NA,\n                        \"gse_ids\": pd.NA,\n                        \"prjna_ids\": pd.NA,\n                        \"srp_ids\": pd.NA,\n                        \"srr_ids\": pd.NA,\n                        \"srx_ids\": pd.NA,\n                        \"srs_ids\": pd.NA,\n                    }\n                )\n\n        return pd.DataFrame(results)\n\n    def doi_to_gse(self, dois):\n        \"\"\"Get GSE identifiers from DOI(s)\n\n        Parameters\n        ----------\n        dois: list or str\n             DOI(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with DOIs and GSE identifiers\n        \"\"\"\n        full_results = self.doi_to_identifiers(dois)\n        return full_results[[\"doi\", \"pmid\", \"pmc_id\", \"gse_ids\"]]\n\n    def doi_to_srp(self, dois):\n        \"\"\"Get SRP identifiers from DOI(s)\n\n        Parameters\n        ----------\n        dois: list or str\n             DOI(s)\n\n        Returns\n        -------\n        results_df: pandas.DataFrame\n                   DataFrame with DOIs and SRP identifiers\n        \"\"\"\n        full_results = self.doi_to_identifiers(dois)\n        return full_results[[\"doi\", \"pmid\", \"pmc_id\", \"srp_ids\"]]\n"
  },
  {
    "path": "pysradb/taxid2name.py",
    "content": "TAXID_TO_NAME = {\n    0: \"not_available\",\n    1: \"root\",\n    2: \"Bacteria\",\n    6: \"Azorhizobium\",\n    7: \"Azorhizobium caulinodans\",\n    9: \"Buchnera aphidicola\",\n    10: \"Cellvibrio\",\n    11: \"Cellulomonas gilvus\",\n    13: \"Dictyoglomus\",\n    14: \"Dictyoglomus thermophilum\",\n    16: \"Methylophilus\",\n    17: \"Methylophilus methylotrophus\",\n    18: \"Pelobacter\",\n    19: \"Pelobacter carbinolicus\",\n    20: \"Phenylobacterium\",\n    21: \"Phenylobacterium immobile\",\n    22: \"Shewanella\",\n    23: \"Shewanella colwelliana\",\n    24: \"Shewanella putrefaciens\",\n    25: \"Shewanella hanedai\",\n    27: \"halophilic eubacterium NRCC 41227\",\n    28: \"halophilic eubacterium\",\n    29: \"Myxococcales\",\n    31: \"Myxococcaceae\",\n    32: \"Myxococcus\",\n    33: \"Myxococcus fulvus\",\n    34: \"Myxococcus xanthus\",\n    35: \"Myxococcus macrosporus\",\n    38: \"Archangium disciforme\",\n    39: \"Archangiaceae\",\n    40: \"Stigmatella\",\n    41: \"Stigmatella aurantiaca\",\n    42: \"Cystobacter\",\n    43: \"Cystobacter fuscus\",\n    44: \"Melittangium\",\n    45: \"Melittangium lichenicola\",\n    47: \"Archangium\",\n    48: \"Archangium gephyra\",\n    49: \"Polyangiaceae\",\n    50: \"Chondromyces\",\n    51: \"Chondromyces apiculatus\",\n    52: \"Chondromyces crocatus\",\n    53: \"Nannocystis\",\n    54: \"Nannocystis exedens\",\n    55: \"Polyangium\",\n    56: \"Sorangium cellulosum\",\n    57: \"Polyangium sp.\",\n    59: \"Vitreoscilla\",\n    60: \"Vitreoscilla sp.\",\n    61: \"Vitreoscilla stercoraria\",\n    62: \"Vitreoscilla beggiatoides\",\n    63: \"Vitreoscilla filiformis\",\n    64: \"Herpetosiphon\",\n    65: \"Herpetosiphon aurantiacus\",\n    68: \"Lysobacter\",\n    69: \"Lysobacter enzymogenes\",\n    71: \"Simonsiella\",\n    72: \"Simonsiella muelleri\",\n    75: \"Caulobacter\",\n    78: \"Caulobacter sp.\",\n    81: \"Hyphomicrobium\",\n    82: \"Hyphomicrobium sp.\",\n    83: \"Hyphomicrobium vulgare\",\n    84: \"Hyphomicrobium methylovorum\",\n    85: \"Hyphomonas\",\n    86: \"Hyphomonas jannaschiana\",\n    87: \"Hyphomonas sp.\",\n    88: \"Leptothrix\",\n    89: \"Leptothrix discophora\",\n    93: \"Stella\",\n    94: \"Stella humosa\",\n    96: \"Gallionella\",\n    97: \"Gallionella ferruginea\",\n    99: \"Ancylobacter\",\n    100: \"Ancylobacter aquaticus\",\n    101: \"Flectobacillus\",\n    102: \"Polaribacter glomeratus\",\n    103: \"Flectobacillus major\",\n    104: \"Cyclobacterium marinum\",\n    105: \"Runella\",\n    106: \"Runella slithyformis\",\n    107: \"Spirosoma\",\n    108: \"Spirosoma linguale\",\n    109: \"Blastobacter\",\n    110: \"Xanthobacter viscosus\",\n    112: \"Planctomycetales\",\n    113: \"Gemmata\",\n    114: \"Gemmata obscuriglobus\",\n    117: \"Pirellula sp.\",\n    118: \"Planctomyces\",\n    119: \"Rubinisphaera brasiliensis\",\n    120: \"Planctopirus limnophila\",\n    122: \"Gimesia maris\",\n    123: \"Pirellula\",\n    124: \"Blastopirellula marina\",\n    125: \"Pirellula staleyi\",\n    126: \"Planctomycetaceae\",\n    127: \"Isosphaera\",\n    128: \"Isosphaera pallida\",\n    131: \"Tuberoidobacter\",\n    132: \"Tuberoidobacter mutans\",\n    133: \"Methylocystis\",\n    134: \"Methylocystis parvus\",\n    136: \"Spirochaetales\",\n    137: \"Spirochaetaceae\",\n    138: \"Borrelia\",\n    139: \"Borreliella burgdorferi\",\n    140: \"Borrelia hermsii\",\n    141: \"Borrelia parkeri\",\n    142: \"Borrelia turicatae\",\n    143: \"Borrelia anserina\",\n    144: \"Borrelia coriaceae\",\n    145: \"Borrelia sp.\",\n    146: \"Spirochaeta\",\n    147: \"Spirochaeta aurantia\",\n    148: \"Sediminispirochaeta bajacaliforniensis\",\n    149: \"Spirochaeta halophila\",\n    150: \"Spirochaeta isovalerica\",\n    151: \"Oceanispirochaeta litoralis\",\n    152: \"Treponema stenostreptum\",\n    154: \"Spirochaeta thermophila\",\n    156: \"Treponema zuelzerae\",\n    157: \"Treponema\",\n    158: \"Treponema denticola\",\n    159: \"Brachyspira hyodysenteriae\",\n    160: \"Treponema pallidum\",\n    161: \"Treponema pallidum subsp. pallidum\",\n    162: \"Treponema phagedenis\",\n    163: \"Treponema bryantii\",\n    164: \"Treponema pectinovorum\",\n    165: \"Treponema saccharophilum\",\n    166: \"Treponema sp.\",\n    167: \"Treponema succinifaciens\",\n    168: \"Treponema pallidum subsp. pertenue\",\n    170: \"Leptospiraceae\",\n    171: \"Leptospira\",\n    172: \"Leptospira biflexa\",\n    173: \"Leptospira interrogans\",\n    174: \"Leptospira borgpetersenii\",\n    176: \"Leptospira interrogans serovar Hardjo\",\n    178: \"Leptospira sp.\",\n    179: \"Leptospirillum\",\n    180: \"Leptospirillum ferrooxidans\",\n    181: \"Leptospirillum sp.\",\n    183: \"Leptonema illini\",\n    185: \"wall-less spirochete\",\n    187: \"Aquaspirillum\",\n    188: \"Magnetospirillum magnetotacticum\",\n    189: \"Novispirillum itersonii\",\n    190: \"Aquaspirillum serpens\",\n    191: \"Azospirillum\",\n    192: \"Azospirillum brasilense\",\n    193: \"Azospirillum lipoferum\",\n    194: \"Campylobacter\",\n    195: \"Campylobacter coli\",\n    196: \"Campylobacter fetus\",\n    197: \"Campylobacter jejuni\",\n    198: \"Campylobacter hyointestinalis\",\n    199: \"Campylobacter concisus\",\n    200: \"Campylobacter curvus\",\n    201: \"Campylobacter lari\",\n    202: \"Campylobacter mucosalis\",\n    203: \"Campylobacter rectus\",\n    204: \"Campylobacter showae\",\n    205: \"Campylobacter sp.\",\n    206: \"Campylobacter sputorum\",\n    207: \"Campylobacter jejuni-like bacterium\",\n    209: \"Helicobacter\",\n    210: \"Helicobacter pylori\",\n    211: \"Helicobacter sp. CLO-3\",\n    212: \"Helicobacter acinonychis\",\n    213: \"Helicobacter cinaedi\",\n    214: \"Helicobacter felis\",\n    215: \"Helicobacter fennelliae\",\n    216: \"Helicobacter muridarum\",\n    217: \"Helicobacter mustelae\",\n    218: \"Helicobacter sp.\",\n    222: \"Achromobacter\",\n    223: \"Achromobacter cycloclastes\",\n    224: \"Achromobacter lyticus\",\n    226: \"Alteromonas\",\n    227: \"Pseudoalteromonas carrageenovora\",\n    228: \"Pseudoalteromonas haloplanktis\",\n    232: \"Alteromonas sp.\",\n    234: \"Brucella\",\n    235: \"Brucella abortus\",\n    236: \"Brucella ovis\",\n    237: \"Flavobacterium\",\n    238: \"Elizabethkingia meningoseptica\",\n    239: \"Flavobacterium sp.\",\n    240: \"Flavobacterium sp. 141-8\",\n    241: \"Flavobacterium sp. SC12154\",\n    242: \"Flavobacterium sp. U-188\",\n    244: \"Planomicrobium okeanokoites\",\n    245: \"Flavobacterium aquatile\",\n    246: \"Chryseobacterium balustinum\",\n    247: \"Empedobacter brevis\",\n    249: \"Terrimonas ferruginea\",\n    250: \"Chryseobacterium gleum\",\n    251: \"Psychroflexus gondwanensis\",\n    252: \"Halomonas halmophila\",\n    253: \"Chryseobacterium indologenes\",\n    254: \"Chryseobacterium indoltheticum\",\n    255: \"[Flavobacterium] lutescens\",\n    256: \"Myroides odoratus\",\n    258: \"Sphingobacterium spiritivorum\",\n    259: \"Sphingobacterium thalpophilum\",\n    261: \"Flavobacterium sp. K172\",\n    262: \"Francisella\",\n    263: \"Francisella tularensis\",\n    264: \"Francisella tularensis subsp. novicida\",\n    265: \"Paracoccus\",\n    266: \"Paracoccus denitrificans\",\n    267: \"Paracoccus sp.\",\n    270: \"Thermus\",\n    271: \"Thermus aquaticus\",\n    272: \"Thermus caldophilus\",\n    274: \"Thermus thermophilus\",\n    275: \"Thermus sp.\",\n    276: \"Thermus filiformis\",\n    277: \"Meiothermus ruber\",\n    279: \"Xanthobacter\",\n    280: \"Xanthobacter autotrophicus\",\n    281: \"Xanthobacter flavus\",\n    283: \"Comamonas\",\n    285: \"Comamonas testosteroni\",\n    286: \"Pseudomonas\",\n    287: \"Pseudomonas aeruginosa\",\n    288: \"Pseudoalteromonas atlantica\",\n    290: \"Pseudomonas carboxydohydrogena\",\n    292: \"Burkholderia cepacia\",\n    293: \"Brevundimonas diminuta\",\n    294: \"Pseudomonas fluorescens\",\n    296: \"Pseudomonas fragi\",\n    297: \"Hydrogenophilus thermoluteolus\",\n    298: \"Pseudomonas marginalis\",\n    300: \"Pseudomonas mendocina\",\n    301: \"Pseudomonas oleovorans\",\n    303: \"Pseudomonas putida\",\n    304: \"Pelomonas saccharophila\",\n    305: \"Ralstonia solanacearum\",\n    306: \"Pseudomonas sp.\",\n    307: \"Pseudomonas sp. KKS102\",\n    308: \"Pseudomonas sp. PG2982\",\n    309: \"Pseudomonas sp. SE83\",\n    311: \"Pseudomonas sp. KWI-56\",\n    312: \"Pseudomonas sp. RS-16\",\n    313: \"Pseudomonas sp. ATCC29598\",\n    314: \"Pseudomonas sp. NK87\",\n    315: \"Pseudomonas sp. ATCC19151\",\n    316: \"Pseudomonas stutzeri\",\n    317: \"Pseudomonas syringae\",\n    318: \"Pseudomonas savastanoi pv. glycinea\",\n    319: \"Pseudomonas savastanoi pv. phaseolicola\",\n    321: \"Pseudomonas syringae pv. syringae\",\n    322: \"Pseudomonas amygdali pv. tabaci\",\n    323: \"Pseudomonas syringae pv. tomato\",\n    329: \"Ralstonia pickettii\",\n    333: \"Pseudomonas chlororaphis subsp. chlororaphis\",\n    335: \"Pseudomonas fluorescens bv. C\",\n    337: \"Burkholderia glumae\",\n    338: \"Xanthomonas\",\n    339: \"Xanthomonas campestris\",\n    340: \"Xanthomonas campestris pv. campestris\",\n    343: \"Xanthomonas translucens\",\n    346: \"Xanthomonas citri\",\n    347: \"Xanthomonas oryzae\",\n    349: \"Zoogloea\",\n    350: \"Zoogloea ramigera\",\n    351: \"Azotobacter group\",\n    352: \"Azotobacter\",\n    353: \"Azotobacter chroococcum\",\n    354: \"Azotobacter vinelandii\",\n    355: \"Azotobacter chroococcum (strain mcd 1)\",\n    356: \"Rhizobiales\",\n    357: \"Agrobacterium\",\n    358: \"Agrobacterium tumefaciens\",\n    359: \"Agrobacterium rhizogenes\",\n    361: \"Agrobacterium sp.\",\n    370: \"Agrobacterium tumefaciens (strain apple 185)\",\n    371: \"Agrobacterium tumefaciens (strain B2A)\",\n    372: \"Agrobacterium tumefaciens (strain II CHRYS)\",\n    373: \"Agrobacterium vitis\",\n    374: \"Bradyrhizobium\",\n    375: \"Bradyrhizobium japonicum\",\n    376: \"Bradyrhizobium sp.\",\n    377: \"Bradyrhizobium sp. ANU 289\",\n    378: \"Bradyrhizobium sp. RP501\",\n    379: \"Rhizobium\",\n    380: \"Sinorhizobium fredii\",\n    381: \"Mesorhizobium loti\",\n    382: \"Sinorhizobium meliloti\",\n    384: \"Rhizobium leguminosarum\",\n    385: \"Rhizobium leguminosarum bv. phaseoli\",\n    386: \"Rhizobium leguminosarum bv. trifolii\",\n    387: \"Rhizobium leguminosarum bv. viciae\",\n    391: \"Rhizobium sp.\",\n    393: \"Rhizobium sp. MPIK3030\",\n    394: \"Sinorhizobium fredii NGR234\",\n    396: \"Rhizobium phaseoli\",\n    398: \"Rhizobium tropici\",\n    399: \"Neorhizobium galegae\",\n    400: \"Rhizobium sp. IRc78\",\n    403: \"Methylococcaceae\",\n    404: \"Methylobacillus\",\n    405: \"Methylobacillus flagellatus\",\n    406: \"Methylobacillus glycogenes\",\n    407: \"Methylobacterium\",\n    408: \"Methylorubrum extorquens\",\n    409: \"Methylobacterium sp.\",\n    410: \"Methylobacterium organophilum\",\n    411: \"Methylobacterium specialis\",\n    413: \"Methylococcus\",\n    414: \"Methylococcus capsulatus\",\n    415: \"Methylobacter luteus\",\n    416: \"Methylomonas\",\n    417: \"Methylomonas clara\",\n    418: \"Methylomonas sp.\",\n    421: \"Methylomonas methanica\",\n    423: \"Methylomonas methylovora\",\n    424: \"Methylomonas rubra\",\n    425: \"Methylosinus\",\n    426: \"Methylosinus trichosporium\",\n    427: \"Methylosinus sp.\",\n    428: \"Methylosinus sporium\",\n    429: \"Methylobacter\",\n    430: \"Methylobacter capsulatus\",\n    433: \"Acetobacteraceae\",\n    434: \"Acetobacter\",\n    435: \"Acetobacter aceti\",\n    436: \"Komagataeibacter hansenii\",\n    437: \"Acidomonas methanolica\",\n    438: \"Acetobacter pasteurianus\",\n    439: \"Gluconacetobacter polyoxogenes\",\n    440: \"Acetobacter sp.\",\n    441: \"Gluconobacter\",\n    442: \"Gluconobacter oxydans\",\n    444: \"Legionellaceae\",\n    445: \"Legionella\",\n    446: \"Legionella pneumophila\",\n    447: \"Fluoribacter bozemanae\",\n    448: \"Legionella erythra\",\n    449: \"Legionella hackeliae\",\n    450: \"Legionella longbeachae\",\n    451: \"Tatlockia micdadei\",\n    452: \"Legionella spiritensis\",\n    453: \"Legionella feeleii\",\n    454: \"Legionella israelensis\",\n    455: \"Legionella jamestowniensis\",\n    456: \"Legionella jordanis\",\n    458: \"Legionella rubrilucens\",\n    459: \"Legionella sp.\",\n    460: \"Legionella steigerwaltii\",\n    461: \"Fluoribacter\",\n    463: \"Fluoribacter dumoffii\",\n    464: \"Fluoribacter gormanii\",\n    465: \"Tatlockia\",\n    466: \"Legionella maceachernii\",\n    468: \"Moraxellaceae\",\n    469: \"Acinetobacter\",\n    470: \"Acinetobacter baumannii\",\n    471: \"Acinetobacter calcoaceticus\",\n    472: \"Acinetobacter sp.\",\n    474: \"Acinetobacter glutaminasificans\",\n    475: \"Moraxella\",\n    476: \"Moraxella bovis\",\n    477: \"Moraxella lacunata\",\n    478: \"Moraxella nonliquefaciens\",\n    479: \"Moraxella sp.\",\n    480: \"Moraxella catarrhalis\",\n    481: \"Neisseriaceae\",\n    482: \"Neisseria\",\n    483: \"Neisseria cinerea\",\n    484: \"Neisseria flavescens\",\n    485: \"Neisseria gonorrhoeae\",\n    486: \"Neisseria lactamica\",\n    487: \"Neisseria meningitidis\",\n    488: \"Neisseria mucosa\",\n    489: \"Neisseria polysaccharea\",\n    490: \"Neisseria sicca\",\n    491: \"Neisseria meningitidis serogroup B\",\n    492: \"Neisseria animalis\",\n    493: \"Neisseria canis\",\n    494: \"Bergeriella denitrificans\",\n    495: \"Neisseria elongata\",\n    496: \"Neisseria macacae\",\n    497: \"Psychrobacter\",\n    498: \"Psychrobacter immobilis\",\n    499: \"Thermomicrobium\",\n    500: \"Thermomicrobium roseum\",\n    502: \"Kingella denitrificans\",\n    504: \"Kingella kingae\",\n    505: \"Kingella oralis\",\n    506: \"Alcaligenaceae\",\n    507: \"Alcaligenes\",\n    511: \"Alcaligenes faecalis\",\n    512: \"Alcaligenes sp.\",\n    516: \"Alcaligenes hydrogenophilus\",\n    517: \"Bordetella\",\n    518: \"Bordetella bronchiseptica\",\n    519: \"Bordetella parapertussis\",\n    520: \"Bordetella pertussis\",\n    521: \"Bordetella avium\",\n    522: \"Acidiphilium\",\n    523: \"Acidiphilium angustum\",\n    524: \"Acidiphilium cryptum\",\n    525: \"Acidocella facilis\",\n    526: \"Acidiphilium rubrum\",\n    527: \"Acidiphilium sp.\",\n    528: \"Ochrobactrum\",\n    529: \"Ochrobactrum anthropi\",\n    531: \"Polaribacter irgensii\",\n    532: \"Beijerinckia\",\n    533: \"Beijerinckia indica\",\n    535: \"Chromobacterium\",\n    536: \"Chromobacterium violaceum\",\n    537: \"Iodobacter fluviatilis\",\n    538: \"Eikenella\",\n    539: \"Eikenella corrodens\",\n    540: \"Eikenella sp.\",\n    541: \"Zymomonas\",\n    542: \"Zymomonas mobilis\",\n    543: \"Enterobacteriaceae\",\n    544: \"Citrobacter\",\n    545: \"Citrobacter koseri\",\n    546: \"Citrobacter freundii\",\n    547: \"Enterobacter\",\n    548: \"Klebsiella aerogenes\",\n    549: \"Pantoea agglomerans\",\n    550: \"Enterobacter cloacae\",\n    551: \"Erwinia\",\n    552: \"Erwinia amylovora\",\n    553: \"Pantoea ananatis\",\n    554: \"Pectobacterium carotovorum\",\n    555: \"Pectobacterium carotovorum subsp. carotovorum\",\n    556: \"Dickeya chrysanthemi\",\n    558: \"Erwinia sp.\",\n    561: \"Escherichia\",\n    562: \"Escherichia coli\",\n    563: \"Shimwellia blattae\",\n    564: \"Escherichia fergusonii\",\n    565: \"Atlantibacter hermannii\",\n    566: \"Pseudescherichia vulneris\",\n    568: \"Hafnia\",\n    569: \"Hafnia alvei\",\n    570: \"Klebsiella\",\n    571: \"Klebsiella oxytoca\",\n    573: \"Klebsiella pneumoniae\",\n    574: \"Klebsiella pneumoniae subsp. ozaenae\",\n    575: \"Raoultella planticola\",\n    576: \"Klebsiella sp.\",\n    577: \"Raoultella terrigena\",\n    579: \"Kluyvera\",\n    580: \"Kluyvera cryocrescens\",\n    581: \"Morganella\",\n    582: \"Morganella morganii\",\n    583: \"Proteus\",\n    584: \"Proteus mirabilis\",\n    585: \"Proteus vulgaris\",\n    586: \"Providencia\",\n    587: \"Providencia rettgeri\",\n    588: \"Providencia stuartii\",\n    589: \"Providencia sp.\",\n    590: \"Salmonella\",\n    594: \"Salmonella enterica subsp. enterica serovar Gallinarum\",\n    595: \"Salmonella enterica subsp. enterica serovar Infantis\",\n    596: \"Salmonella enterica subsp. enterica serovar Muenchen\",\n    597: \"Salmonella enterica subsp. enterica serovar Potsdam\",\n    598: \"Salmonella enterica subsp. enterica serovar Rubislaw\",\n    599: \"Salmonella sp.\",\n    600: \"Salmonella enterica subsp. enterica serovar Thompson\",\n    604: \"Salmonella enterica subsp. enterica serovar Gallinarum/pullorum\",\n    605: \"Salmonella enterica subsp. enterica serovar Pullorum\",\n    607: \"Salmonella enterica subsp. enterica serovar Abortusequi\",\n    610: \"Salmonella enterica subsp. enterica serovar Abortus\",\n    611: \"Salmonella enterica subsp. enterica serovar Heidelberg\",\n    612: \"Salmonella enterica subsp. enterica serovar Ordonez\",\n    613: \"Serratia\",\n    614: \"Serratia liquefaciens\",\n    615: \"Serratia marcescens\",\n    616: \"Serratia sp.\",\n    617: \"Serratia sp. E-15\",\n    618: \"Serratia odorifera\",\n    620: \"Shigella\",\n    621: \"Shigella boydii\",\n    622: \"Shigella dysenteriae\",\n    623: \"Shigella flexneri\",\n    624: \"Shigella sonnei\",\n    625: \"Shigella sp.\",\n    626: \"Xenorhabdus\",\n    628: \"Xenorhabdus nematophila\",\n    629: \"Yersinia\",\n    630: \"Yersinia enterocolitica\",\n    631: \"Yersinia intermedia\",\n    632: \"Yersinia pestis\",\n    633: \"Yersinia pseudotuberculosis\",\n    634: \"Yersinia bercovieri\",\n    635: \"Edwardsiella\",\n    636: \"Edwardsiella tarda\",\n    637: \"Arsenophonus\",\n    638: \"Arsenophonus nasoniae\",\n    641: \"Vibrionaceae\",\n    642: \"Aeromonas\",\n    644: \"Aeromonas hydrophila\",\n    645: \"Aeromonas salmonicida\",\n    646: \"Aeromonas sobria\",\n    647: \"Aeromonas sp.\",\n    648: \"Aeromonas caviae\",\n    649: \"Aeromonas eucrenophila\",\n    650: \"Aeromonas jandaei\",\n    651: \"Aeromonas media\",\n    652: \"Aeromonas schubertii\",\n    654: \"Aeromonas veronii\",\n    656: \"Aeromonas allosaccharophila\",\n    657: \"Photobacterium\",\n    658: \"Photobacterium leiognathi subsp. leiognathi\",\n    659: \"Photobacterium phosphoreum\",\n    660: \"Photobacterium sp.\",\n    661: \"Photobacterium angustum\",\n    662: \"Vibrio\",\n    663: \"Vibrio alginolyticus\",\n    664: \"Vibrio alginolyticus chemovar iophagus\",\n    666: \"Vibrio cholerae\",\n    668: \"Aliivibrio fischeri\",\n    669: \"Vibrio harveyi\",\n    670: \"Vibrio parahaemolyticus\",\n    671: \"Vibrio proteolyticus\",\n    672: \"Vibrio vulnificus\",\n    673: \"Grimontia hollisae\",\n    674: \"Vibrio mimicus\",\n    675: \"Vibrio cincinnatiensis\",\n    676: \"Vibrio fluvialis\",\n    678: \"Vibrio sp.\",\n    679: \"Vibrio adaptatus\",\n    680: \"Vibrio campbellii\",\n    683: \"Vibrio cyclosites\",\n    685: \"Vibrio diazotrophicus\",\n    686: \"Vibrio cholerae O1 biovar El Tor\",\n    687: \"Vibrio gazogenes\",\n    688: \"Aliivibrio logei\",\n    689: \"Vibrio mediterranei\",\n    691: \"Vibrio natriegens\",\n    693: \"Vibrio nereis\",\n    701: \"magnetite-containing magnetic coccus\",\n    702: \"Plesiomonas\",\n    703: \"Plesiomonas shigelloides\",\n    704: \"Cryptosaras couesi symbiont\",\n    709: \"Melanocetus johnsoni symbiont\",\n    712: \"Pasteurellaceae\",\n    713: \"Actinobacillus\",\n    714: \"Aggregatibacter actinomycetemcomitans\",\n    715: \"Actinobacillus pleuropneumoniae\",\n    716: \"Actinobacillus suis\",\n    717: \"Actinobacillus capsulatus\",\n    718: \"Actinobacillus equuli\",\n    719: \"Actinobacillus hominis\",\n    720: \"Actinobacillus lignieresii\",\n    721: \"Actinobacillus salpingitidis\",\n    722: \"Actinobacillus seminis\",\n    723: \"Actinobacillus ureae\",\n    724: \"Haemophilus\",\n    725: \"Haemophilus influenzae biotype aegyptius\",\n    726: \"Haemophilus haemolyticus\",\n    727: \"Haemophilus influenzae\",\n    728: \"Avibacterium paragallinarum\",\n    729: \"Haemophilus parainfluenzae\",\n    730: \"[Haemophilus] ducreyi\",\n    731: \"Histophilus somni\",\n    732: \"Aggregatibacter aphrophilus\",\n    733: \"Haemophilus haemoglobinophilus\",\n    734: \"Haemophilus paracuniculus\",\n    735: \"Haemophilus parahaemolyticus\",\n    736: \"Haemophilus paraphrohaemolyticus\",\n    738: \"Glaesserella parasuis\",\n    739: \"Aggregatibacter segnis\",\n    740: \"Haemophilus sp.\",\n    741: \"Haemophilus taxon C\",\n    745: \"Pasteurella\",\n    747: \"Pasteurella multocida\",\n    749: \"[Pasteurella] aerogenes\",\n    750: \"Gallibacterium anatis\",\n    751: \"Avibacterium avium\",\n    752: \"Pasteurella bettyae\",\n    753: \"Pasteurella canis\",\n    754: \"Pasteurella dagmatis\",\n    755: \"Avibacterium gallinarum\",\n    756: \"Pasteurella langaaensis\",\n    757: \"[Pasteurella] mairii\",\n    758: \"Rodentibacter pneumotropicus\",\n    759: \"Pasteurella sp.\",\n    760: \"Pasteurella stomatis\",\n    761: \"Pasteurella testudinis\",\n    762: \"Avibacterium volantium\",\n    766: \"Rickettsiales\",\n    768: \"Anaplasma\",\n    769: \"Anaplasma centrale\",\n    770: \"Anaplasma marginale\",\n    772: \"Bartonellaceae\",\n    773: \"Bartonella\",\n    774: \"Bartonella bacilliformis\",\n    775: \"Rickettsiaceae\",\n    776: \"Coxiella\",\n    777: \"Coxiella burnetii\",\n    779: \"Ehrlichia ruminantium\",\n    780: \"Rickettsia\",\n    781: \"Rickettsia conorii\",\n    782: \"Rickettsia prowazekii\",\n    783: \"Rickettsia rickettsii\",\n    784: \"Orientia tsutsugamushi\",\n    785: \"Rickettsia typhi\",\n    786: \"Rickettsia akari\",\n    787: \"Rickettsia australis\",\n    788: \"Rickettsia canadensis\",\n    789: \"Rickettsia sp.\",\n    801: \"BEV proteobacterium\",\n    803: \"Bartonella quintana\",\n    807: \"Bartonella elizabethae\",\n    809: \"Chlamydiaceae\",\n    810: \"Chlamydia\",\n    813: \"Chlamydia trachomatis\",\n    815: \"Bacteroidaceae\",\n    816: \"Bacteroides\",\n    817: \"Bacteroides fragilis\",\n    818: \"Bacteroides thetaiotaomicron\",\n    820: \"Bacteroides uniformis\",\n    821: \"Bacteroides vulgatus\",\n    823: \"Parabacteroides distasonis\",\n    824: \"Campylobacter gracilis\",\n    826: \"Sebaldella termitidis\",\n    827: \"Campylobacter ureolyticus\",\n    830: \"Butyrivibrio\",\n    831: \"Butyrivibrio fibrisolvens\",\n    832: \"Fibrobacter\",\n    833: \"Fibrobacter succinogenes\",\n    834: \"Fibrobacter succinogenes subsp. succinogenes\",\n    836: \"Porphyromonas\",\n    837: \"Porphyromonas gingivalis\",\n    838: \"Prevotella\",\n    839: \"Prevotella ruminicola\",\n    840: \"Prevotella loescheii\",\n    841: \"Roseburia\",\n    842: \"Roseburia cecicola\",\n    843: \"Wolinella\",\n    844: \"Wolinella succinogenes\",\n    846: \"Oxalobacter\",\n    847: \"Oxalobacter formigenes\",\n    848: \"Fusobacterium\",\n    849: \"Fusobacterium gonidiaformans\",\n    850: \"Fusobacterium mortiferum\",\n    851: \"Fusobacterium nucleatum\",\n    852: \"Fusobacterium perfoetens\",\n    853: \"Faecalibacterium prausnitzii\",\n    854: \"Fusobacterium russii\",\n    855: \"Fusobacterium simiae\",\n    856: \"Fusobacterium varium\",\n    858: \"Fusobacterium necrogenes\",\n    859: \"Fusobacterium necrophorum\",\n    860: \"Fusobacterium periodonticum\",\n    861: \"Fusobacterium ulcerans\",\n    862: \"Syntrophomonas\",\n    863: \"Syntrophomonas wolfei\",\n    864: \"Pectinatus\",\n    865: \"Pectinatus frisingensis\",\n    866: \"Ruminobacter\",\n    867: \"Ruminobacter amylophilus\",\n    868: \"Cardiobacteriaceae\",\n    869: \"Dichelobacter\",\n    870: \"Dichelobacter nodosus\",\n    872: \"Desulfovibrio\",\n    873: \"Desulfocurvibacter africanus\",\n    876: \"Desulfovibrio desulfuricans\",\n    878: \"Desulfovibrio fructosivorans\",\n    879: \"Desulfovibrio gigas\",\n    880: \"Desulfovibrio salexigens\",\n    881: \"Desulfovibrio vulgaris\",\n    882: \"Desulfovibrio vulgaris str. Hildenborough\",\n    883: \"Desulfovibrio vulgaris str. 'Miyazaki F'\",\n    884: \"Desulfovibrio oxamicus (strain Monticello)\",\n    885: \"Desulfovibrio sp.\",\n    886: \"Thermodesulfobacterium thermophilum\",\n    888: \"Desulfobotulus sapovorans\",\n    889: \"Desulfovibrio longus\",\n    890: \"Desulfuromonas\",\n    891: \"Desulfuromonas acetoxidans\",\n    892: \"Desulfuromonas sp.\",\n    893: \"Desulfobulbus\",\n    894: \"Desulfobulbus propionicus\",\n    895: \"Desulfobulbus sp.\",\n    896: \"Desulfococcus\",\n    897: \"Desulfococcus multivorans\",\n    898: \"Desulfomicrobium\",\n    899: \"Desulfomicrobium baculatum\",\n    901: \"Desulfovibrio piger\",\n    904: \"Acidaminococcus\",\n    905: \"Acidaminococcus fermentans\",\n    906: \"Megasphaera\",\n    907: \"Megasphaera elsdenii\",\n    911: \"Nitrobacter\",\n    912: \"Nitrobacter hamburgensis\",\n    913: \"Nitrobacter winogradskyi\",\n    914: \"Nitrosomonas\",\n    915: \"Nitrosomonas europaea\",\n    916: \"Nitrosomonas eutropha\",\n    917: \"Nitrosomonas marina\",\n    919: \"Thiobacillus\",\n    920: \"Acidithiobacillus ferrooxidans\",\n    921: \"Starkeya novella\",\n    923: \"Guyparkeria hydrothermalis\",\n    924: \"Thiobacillus sp.\",\n    926: \"Thiomonas intermedia\",\n    927: \"Halothiobacillus neapolitanus\",\n    928: \"Thiomonas perometabolis\",\n    929: \"Thermithiobacillus tepidarius\",\n    930: \"Acidithiobacillus thiooxidans\",\n    931: \"Thiobacillus thioparus\",\n    932: \"Thiomicrospira thyasirae\",\n    933: \"Thiomicrospira\",\n    934: \"Thiomicrospira pelophila\",\n    935: \"Thiomicrospira sp.\",\n    936: \"Thiovulum\",\n    937: \"Thiovulum sp.\",\n    939: \"Hydrogenobacter\",\n    940: \"Hydrogenobacter thermophilus\",\n    942: \"Anaplasmataceae\",\n    943: \"Ehrlichia\",\n    944: \"Ehrlichia canis\",\n    945: \"Ehrlichia chaffeensis\",\n    947: \"Ehrlichia ewingii\",\n    948: \"Anaplasma phagocytophilum\",\n    949: \"Anaplasma platys\",\n    950: \"Neorickettsia risticii\",\n    951: \"Neorickettsia sennetsu\",\n    952: \"Wolbachieae\",\n    953: \"Wolbachia\",\n    954: \"Francisella persica\",\n    955: \"Wolbachia pipientis\",\n    956: \"Wolbachia sp.\",\n    958: \"Bdellovibrio\",\n    959: \"Bdellovibrio bacteriovorus\",\n    960: \"Bacteriovorax stolpii\",\n    962: \"Campylobacter-like bacterium\",\n    963: \"Herbaspirillum\",\n    964: \"Herbaspirillum seropedicae\",\n    965: \"Oceanospirillum\",\n    966: \"Oceanospirillum linum\",\n    967: \"Spirillum\",\n    968: \"Spirillum volutans\",\n    970: \"Selenomonas\",\n    971: \"Selenomonas ruminantium\",\n    972: \"Halanaerobiaceae\",\n    973: \"Sporohalobacter\",\n    974: \"Sporohalobacter lortetii\",\n    976: \"Bacteroidetes\",\n    978: \"Cytophaga\",\n    979: \"Cellulophaga lytica\",\n    981: \"Persicobacter diffluens\",\n    982: \"Saccharicrinis fermentans\",\n    983: \"Flavobacterium flevense\",\n    984: \"Pedobacter heparinus\",\n    985: \"Cytophaga hutchinsonii\",\n    986: \"Flavobacterium johnsoniae\",\n    987: \"Aquimarina latercula\",\n    988: \"Leeuwenhoekiella marinoflava\",\n    989: \"Marinilabilia salmonicolor\",\n    990: \"Cytophaga xylanolytica\",\n    991: \"Flavobacterium hydatis\",\n    992: \"Flexibacter\",\n    995: \"Solitalea canadensis\",\n    996: \"Flavobacterium columnare\",\n    997: \"Eisenibacter elegans\",\n    998: \"Flexibacter flexilis\",\n    999: \"Bernardetia litoralis\",\n    1001: \"Garritya polymorpha\",\n    1002: \"Hugenholtzia roseola\",\n    1003: \"Thermoflexibacter ruber\",\n    1004: \"Chitinophaga sancti\",\n    1005: \"Flexibacter sp.\",\n    1006: \"Marivirga tractuosa\",\n    1007: \"Saprospira\",\n    1008: \"Saprospira grandis\",\n    1010: \"Sphingobacterium mizutaii\",\n    1011: \"Sporocytophaga\",\n    1012: \"Sporocytophaga cauliformis\",\n    1013: \"Weeksella\",\n    1014: \"Weeksella virosa\",\n    1015: \"Bergeyella zoohelcum\",\n    1016: \"Capnocytophaga\",\n    1017: \"Capnocytophaga gingivalis\",\n    1018: \"Capnocytophaga ochracea\",\n    1019: \"Capnocytophaga sputigena\",\n    1021: \"Beggiatoa\",\n    1022: \"Beggiatoa alba\",\n    1023: \"Microscilla\",\n    1025: \"Flammeovirga arenaria\",\n    1026: \"Marinoscillum furvescens\",\n    1027: \"Microscilla marina\",\n    1028: \"Marivirga sericea\",\n    1030: \"Thiothrix\",\n    1031: \"Thiothrix nivea\",\n    1032: \"Thiothrix sp.\",\n    1033: \"Afipia\",\n    1034: \"Afipia clevelandensis\",\n    1035: \"Afipia felis\",\n    1037: \"Barophile WHB 46\",\n    1041: \"Erythrobacter\",\n    1042: \"Erythrobacter sp.\",\n    1044: \"Erythrobacter longus\",\n    1046: \"Chromatiaceae\",\n    1047: \"Chromatium\",\n    1048: \"Marichromatium gracile\",\n    1049: \"Allochromatium vinosum\",\n    1050: \"Thermochromatium tepidum\",\n    1051: \"Ectothiorhodospira\",\n    1052: \"Halorhodospira halochloris\",\n    1053: \"Halorhodospira halophila\",\n    1054: \"Ectothiorhodospira shaposhnikovii\",\n    1056: \"Thiocapsa\",\n    1057: \"Thiococcus pfennigii\",\n    1058: \"Thiocapsa roseopersicina\",\n    1060: \"Rhodobacter\",\n    1061: \"Rhodobacter capsulatus\",\n    1062: \"Rhodobacter sp.\",\n    1063: \"Rhodobacter sphaeroides\",\n    1064: \"Rhodocyclus\",\n    1066: \"Rhodocyclus tenuis\",\n    1067: \"Rhodocyclus purpureus\",\n    1068: \"Rhodomicrobium\",\n    1069: \"Rhodomicrobium vannielii\",\n    1070: \"Rhodopila\",\n    1071: \"Rhodopila globiformis\",\n    1073: \"Rhodopseudomonas\",\n    1074: \"Rhodoblastus acidophilus\",\n    1075: \"Rhodobacter blasticus\",\n    1076: \"Rhodopseudomonas palustris\",\n    1078: \"Rhodopseudomonas sp.\",\n    1079: \"Blastochloris viridis\",\n    1080: \"Afifella marina\",\n    1081: \"Rhodospirillum\",\n    1082: \"Phaeospirillum fulvum\",\n    1083: \"Phaeospirillum molischianum\",\n    1084: \"Pararhodospirillum photometricum\",\n    1085: \"Rhodospirillum rubrum\",\n    1086: \"Rhodothalassium salexigens\",\n    1087: \"Rhodovibrio salinarum\",\n    1088: \"Rhodovibrio sodomensis\",\n    1090: \"Chlorobi\",\n    1091: \"Chlorobium\",\n    1092: \"Chlorobium limicola\",\n    1094: \"Chlorobium phaeovibrioides\",\n    1095: \"Chlorobium sp.\",\n    1096: \"Chlorobium phaeobacteroides\",\n    1097: \"Chlorobaculum tepidum\",\n    1098: \"Prosthecochloris vibrioformis\",\n    1099: \"Pelodictyon\",\n    1100: \"Pelodictyon luteolum\",\n    1101: \"Prosthecochloris\",\n    1102: \"Prosthecochloris aestuarii\",\n    1103: \"Clathrochloris\",\n    1104: \"Clathrochloris sulfurica\",\n    1106: \"Chloroflexaceae\",\n    1107: \"Chloroflexus\",\n    1108: \"Chloroflexus aurantiacus\",\n    1109: \"Heliothrix\",\n    1110: \"Heliothrix oregonensis\",\n    1111: \"Porphyrobacter\",\n    1112: \"Porphyrobacter neustonensis\",\n    1113: \"Porphyrobacter sp.\",\n    1117: \"Cyanobacteria\",\n    1118: \"Chroococcales\",\n    1119: \"Aphanocapsa\",\n    1121: \"Aphanothece\",\n    1122: \"Aphanothece sacrum\",\n    1123: \"Chlorogloeopsis\",\n    1124: \"Chlorogloeopsis fritschii\",\n    1125: \"Microcystis\",\n    1126: \"Microcystis aeruginosa\",\n    1127: \"Microcystis sp.\",\n    1128: \"Microcystis sp. 'BC 84/1'\",\n    1129: \"Synechococcus\",\n    1131: \"Synechococcus sp.\",\n    1140: \"Synechococcus elongatus PCC 7942\",\n    1142: \"Synechocystis\",\n    1143: \"Synechocystis sp.\",\n    1144: \"Synechocystis sp. PCC 6701\",\n    1147: \"Synechocystis sp. PCC 6714\",\n    1148: \"Synechocystis sp. PCC 6803\",\n    1150: \"Oscillatoriales\",\n    1151: \"Oscillatoriales cyanobacterium\",\n    1152: \"Pseudanabaena\",\n    1153: \"Pseudanabaena sp.\",\n    1154: \"Spirulina\",\n    1157: \"Spirulina sp.\",\n    1158: \"Oscillatoria\",\n    1159: \"Oscillatoria sp.\",\n    1160: \"Planktothrix agardhii\",\n    1161: \"Nostocales\",\n    1162: \"Nostocaceae\",\n    1163: \"Anabaena\",\n    1164: \"Trichormus azollae\",\n    1165: \"Anabaena cylindrica\",\n    1166: \"Dolichospermum flos-aquae\",\n    1167: \"Anabaena sp.\",\n    1168: \"Nostoc sp. PCC 7119\",\n    1173: \"Anabaena oscillarioides\",\n    1175: \"Aphanizomenon\",\n    1176: \"Aphanizomenon flos-aquae\",\n    1177: \"Nostoc\",\n    1178: \"Nostoc commune\",\n    1179: \"Desmonostoc muscorum\",\n    1180: \"Nostoc sp.\",\n    1181: \"Desmonostoc sp. PCC 7906\",\n    1182: \"Scytonemataceae\",\n    1183: \"Plectonema\",\n    1184: \"Leptolyngbya boryana\",\n    1185: \"Rivulariaceae\",\n    1186: \"Calothrix\",\n    1187: \"Calothrix sp.\",\n    1188: \"Tolypothrix sp. PCC 7601\",\n    1189: \"Stigonemataceae\",\n    1190: \"Fischerella\",\n    1191: \"Fischerella sp.\",\n    1197: \"Microchaete diplosiphon\",\n    1198: \"Phormidium\",\n    1199: \"Phormidium sp.\",\n    1200: \"Phormidium minutum\",\n    1202: \"Leptolyngbya ectocarpi\",\n    1203: \"Scytonema\",\n    1204: \"Scytonema sp.\",\n    1205: \"Trichodesmium\",\n    1206: \"Trichodesmium erythraeum\",\n    1207: \"Trichodesmium sp.\",\n    1208: \"Trichodesmium thiebautii\",\n    1211: \"uncultured cyanobacterium\",\n    1213: \"Prochloraceae\",\n    1214: \"Prochloron\",\n    1215: \"Prochloron sp.\",\n    1216: \"Prochloron didemni\",\n    1218: \"Prochlorococcus\",\n    1219: \"Prochlorococcus marinus\",\n    1220: \"Prochlorococcus sp.\",\n    1222: \"Prochlorothrix\",\n    1223: \"Prochlorothrix hollandica\",\n    1224: \"Proteobacteria\",\n    1227: \"Nitrosococcus\",\n    1229: \"Nitrosococcus oceani\",\n    1231: \"Nitrosospira multiformis\",\n    1232: \"Nitrosovibrio\",\n    1233: \"Nitrosovibrio tenuis\",\n    1234: \"Nitrospira\",\n    1236: \"Gammaproteobacteria\",\n    1237: \"Piscirickettsia\",\n    1238: \"Piscirickettsia salmonis\",\n    1239: \"Firmicutes\",\n    1243: \"Leuconostoc\",\n    1244: \"Leuconostoc gelidum\",\n    1245: \"Leuconostoc mesenteroides\",\n    1246: \"Leuconostoc lactis\",\n    1247: \"Oenococcus oeni\",\n    1249: \"Weissella paramesenteroides\",\n    1251: \"Leuconostoc fallax\",\n    1252: \"Leuconostoc carnosum\",\n    1253: \"Pediococcus\",\n    1254: \"Pediococcus acidilactici\",\n    1255: \"Pediococcus pentosaceus\",\n    1257: \"Peptostreptococcus\",\n    1258: \"Peptoniphilus asaccharolyticus\",\n    1259: \"Peptostreptococcus glycinophilus\",\n    1260: \"Finegoldia magna\",\n    1261: \"Peptostreptococcus anaerobius\",\n    1262: \"Peptostreptococcus sp.\",\n    1263: \"Ruminococcus\",\n    1264: \"Ruminococcus albus\",\n    1265: \"Ruminococcus flavefaciens\",\n    1266: \"Sarcina\",\n    1267: \"Clostridium ventriculi\",\n    1268: \"Micrococcaceae\",\n    1269: \"Micrococcus\",\n    1270: \"Micrococcus luteus\",\n    1271: \"Micrococcus sp.\",\n    1272: \"Kocuria varians\",\n    1273: \"Micrococcus lylae\",\n    1274: \"Dermacoccus nishinomiyaensis\",\n    1275: \"Kocuria rosea\",\n    1276: \"Kytococcus sedentarius\",\n    1279: \"Staphylococcus\",\n    1280: \"Staphylococcus aureus\",\n    1281: \"Staphylococcus carnosus\",\n    1282: \"Staphylococcus epidermidis\",\n    1283: \"Staphylococcus haemolyticus\",\n    1284: \"Staphylococcus hyicus\",\n    1285: \"Staphylococcus intermedius\",\n    1286: \"Staphylococcus simulans\",\n    1287: \"Staphylococcus simulans bv. staphylolyticus\",\n    1288: \"Staphylococcus xylosus\",\n    1290: \"Staphylococcus hominis\",\n    1292: \"Staphylococcus warneri\",\n    1293: \"Staphylococcus gallinarum\",\n    1294: \"Staphylococcus muscae\",\n    1295: \"Staphylococcus schleiferi\",\n    1296: \"Staphylococcus sciuri\",\n    1297: \"Deinococcus-Thermus\",\n    1298: \"Deinococcus\",\n    1299: \"Deinococcus radiodurans\",\n    1300: \"Streptococcaceae\",\n    1301: \"Streptococcus\",\n    1302: \"Streptococcus gordonii\",\n    1303: \"Streptococcus oralis\",\n    1304: \"Streptococcus salivarius\",\n    1305: \"Streptococcus sanguinis\",\n    1306: \"Streptococcus sp.\",\n    1307: \"Streptococcus suis\",\n    1308: \"Streptococcus thermophilus\",\n    1309: \"Streptococcus mutans\",\n    1310: \"Streptococcus sobrinus\",\n    1311: \"Streptococcus agalactiae\",\n    1313: \"Streptococcus pneumoniae\",\n    1314: \"Streptococcus pyogenes\",\n    1317: \"Streptococcus downei\",\n    1318: \"Streptococcus parasanguinis\",\n    1319: \"Streptococcus sp. 'group B'\",\n    1320: \"Streptococcus sp. 'group G'\",\n    1322: \"Blautia hansenii\",\n    1323: \"Faecalicoccus pleomorphus\",\n    1324: \"Streptococcus sp. G148\",\n    1325: \"Streptococcus sp. GX7805\",\n    1326: \"Streptococcus acidominimus\",\n    1327: \"Streptococcus alactolytiens\",\n    1328: \"Streptococcus anginosus\",\n    1329: \"Streptococcus canis\",\n    1332: \"Streptococcus criae\",\n    1333: \"Streptococcus criceti\",\n    1334: \"Streptococcus dysgalactiae\",\n    1335: \"Streptococcus equinus\",\n    1336: \"Streptococcus equi\",\n    1337: \"Streptococcus hyointestinalis\",\n    1338: \"Streptococcus intermedius\",\n    1339: \"Streptococcus macacae\",\n    1340: \"Streptococcus porcinus\",\n    1341: \"Streptococcus ratti\",\n    1343: \"Streptococcus vestibularis\",\n    1345: \"Streptococcus ferus\",\n    1346: \"Streptococcus iniae\",\n    1348: \"Streptococcus parauberis\",\n    1349: \"Streptococcus uberis\",\n    1350: \"Enterococcus\",\n    1351: \"Enterococcus faecalis\",\n    1352: \"Enterococcus faecium\",\n    1353: \"Enterococcus gallinarum\",\n    1354: \"Enterococcus hirae\",\n    1355: \"Enterococcus columbae\",\n    1356: \"Enterococcus sulfureus\",\n    1357: \"Lactococcus\",\n    1358: \"Lactococcus lactis\",\n    1359: \"Lactococcus lactis subsp. cremoris\",\n    1360: \"Lactococcus lactis subsp. lactis\",\n    1363: \"Lactococcus garvieae\",\n    1364: \"Lactococcus piscium\",\n    1365: \"Lactococcus plantarum\",\n    1366: \"Lactococcus raffinolactis\",\n    1370: \"Marinococcus\",\n    1371: \"Marinococcus halophilus\",\n    1372: \"Planococcus\",\n    1373: \"Planococcus citreus\",\n    1374: \"Planococcus kocurii\",\n    1375: \"Aerococcus\",\n    1376: \"Aerococcus urinae\",\n    1377: \"Aerococcus viridans\",\n    1378: \"Gemella\",\n    1379: \"Gemella haemolysans\",\n    1380: \"Atopobium\",\n    1381: \"Atopobium minutum\",\n    1382: \"Atopobium parvulum\",\n    1383: \"Atopobium rimae\",\n    1385: \"Bacillales\",\n    1386: \"Bacillus\",\n    1388: \"Alicyclobacillus acidocaldarius subsp. acidocaldarius\",\n    1390: \"Bacillus amyloliquefaciens\",\n    1391: \"Aneurinibacillus aneurinilyticus\",\n    1392: \"Bacillus anthracis\",\n    1393: \"Brevibacillus brevis\",\n    1394: \"[Bacillus] caldolyticus\",\n    1395: \"[Bacillus] caldotenax\",\n    1396: \"Bacillus cereus\",\n    1397: \"Bacillus circulans\",\n    1398: \"Bacillus coagulans\",\n    1399: \"Bacillus firmus\",\n    1400: \"Bacillus intermedius\",\n    1401: \"Paenibacillus lautus\",\n    1402: \"Bacillus licheniformis\",\n    1404: \"Bacillus megaterium\",\n    1405: \"Bacillus mycoides\",\n    1406: \"Paenibacillus polymyxa\",\n    1407: \"Bacillus psychrosaccharolyticus\",\n    1408: \"Bacillus pumilus\",\n    1409: \"Bacillus sp. (in: Bacteria)\",\n    1410: \"Bacillus sp. 1011\",\n    1411: \"Bacillus akibai\",\n    1412: \"Bacillus sp. 38-2\",\n    1413: \"Bacillus cellulosilyticus\",\n    1415: \"Bacillus sp. KSM-635\",\n    1416: \"Bacillus sp. 707\",\n    1417: \"Bacillus sp. B1018\",\n    1418: \"Bacillus mannanilyticus\",\n    1419: \"Bacillus sp. NS-129\",\n    1420: \"Bacillus sp. RC607\",\n    1421: \"Lysinibacillus sphaericus\",\n    1422: \"Geobacillus stearothermophilus\",\n    1423: \"Bacillus subtilis\",\n    1424: \"Bacillus subtilis strain DY\",\n    1425: \"Bacillus thermoamyloliquefaciens\",\n    1426: \"Parageobacillus thermoglucosidasius\",\n    1427: \"Bacillus thermoproteolyticus\",\n    1428: \"Bacillus thuringiensis\",\n    1430: \"Bacillus thuringiensis serovar israelensis\",\n    1432: \"Bacillus thuringiensis serovar thuringiensis\",\n    1433: \"Bacillus thuringiensis serovar aizawai\",\n    1434: \"Bacillus thuringiensis serovar berliner\",\n    1435: \"Bacillus thuringiensis serovar san diego\",\n    1436: \"Bacillus thuringiensis serovar entomocidus\",\n    1440: \"Bacillus thuringiensis serovar alesti\",\n    1441: \"Bacillus thuringiensis serovar morrisoni\",\n    1442: \"Bacillus thuringiensis serovar tolworthi\",\n    1444: \"Bacillus thuringiensis serovar tenebrionis\",\n    1445: \"Bacillus alcalophilus\",\n    1447: \"Bacillus sp. Q\",\n    1449: \"Amphibacillus xylanus\",\n    1450: \"Alicyclobacillus acidoterrestris\",\n    1451: \"Paenibacillus amylolyticus\",\n    1452: \"Bacillus atrophaeus\",\n    1454: \"Bacillus azotoformans\",\n    1455: \"Bacillus badius\",\n    1456: \"Bacillus benzoevorans\",\n    1457: \"Alicyclobacillus cycloheptanicus\",\n    1458: \"Bacillus fastidiosus\",\n    1459: \"Sporosarcina globispora\",\n    1461: \"Psychrobacillus insolitus\",\n    1462: \"Geobacillus kaustophilus\",\n    1464: \"Paenibacillus larvae\",\n    1465: \"Brevibacillus laterosporus\",\n    1467: \"Bacillus lentus\",\n    1468: \"Paenibacillus macquariensis subsp. macquariensis\",\n    1471: \"Bacillus methanolicus\",\n    1472: \"Paenibacillus pabuli\",\n    1473: \"Virgibacillus pantothenticus\",\n    1474: \"Sporosarcina pasteurii\",\n    1476: \"Sporosarcina psychrophila\",\n    1477: \"Paenibacillus larvae subsp. pulvifaciens\",\n    1478: \"Bacillus simplex\",\n    1479: \"Bacillus smithii\",\n    1481: \"Bacillus ohbensis\",\n    1482: \"Virgibacillus halodenitrificans\",\n    1483: \"Bacillus subtilis subsp. amylosacchariticus\",\n    1484: \"Hydrogenibacillus schlegelii\",\n    1485: \"Clostridium\",\n    1487: \"[Butyribacterium] methylotrophicum\",\n    1488: \"Clostridium acetobutylicum\",\n    1490: \"Paraclostridium bifermentans\",\n    1491: \"Clostridium botulinum\",\n    1492: \"Clostridium butyricum\",\n    1493: \"Clostridium cellulovorans\",\n    1494: \"Clostridium cochlearium\",\n    1495: \"Clostridium cylindrosporum\",\n    1496: \"Clostridioides difficile\",\n    1497: \"Clostridium formicaceticum\",\n    1498: \"Hathewaya histolytica\",\n    1499: \"Ruminiclostridium josui\",\n    1501: \"Clostridium pasteurianum\",\n    1502: \"Clostridium perfringens\",\n    1503: \"Gottschalkia purinilytica\",\n    1504: \"Clostridium septicum\",\n    1505: \"Paeniclostridium sordellii\",\n    1506: \"Clostridium sp.\",\n    1507: \"Clostridium sp. ATCC 29733\",\n    1508: \"Clostridium sp. F1\",\n    1509: \"Clostridium sporogenes\",\n    1510: \"Thermoclostridium stercorarium\",\n    1511: \"Acetoanaerobium sticklandii\",\n    1512: \"[Clostridium] symbiosum\",\n    1513: \"Clostridium tetani\",\n    1515: \"Hungateiclostridium thermocellum\",\n    1516: \"Thermoanaerobacter thermohydrosulfuricus\",\n    1517: \"Thermoanaerobacterium thermosaccharolyticum\",\n    1519: \"Clostridium tyrobutyricum\",\n    1520: \"Clostridium beijerinckii\",\n    1521: \"Ruminiclostridium cellulolyticum\",\n    1522: \"[Clostridium] innocuum\",\n    1523: \"Clostridium longisporum\",\n    1524: \"[Clostridium] piliforme\",\n    1525: \"Moorella thermoacetica\",\n    1526: \"[Clostridium] aminophilum\",\n    1527: \"Anaerocolumna aminovalerica\",\n    1528: \"Eubacterium barkeri\",\n    1529: \"Clostridium cadaveris\",\n    1530: \"Clostridium carnis\",\n    1531: \"[Clostridium] clostridioforme\",\n    1532: \"Blautia coccoides\",\n    1533: \"Clostridium fallax\",\n    1534: \"Clostridium kluyveri\",\n    1535: \"[Clostridium] leptum\",\n    1536: \"Hathewaya limosa\",\n    1537: \"Romboutsia lituseburensis\",\n    1538: \"Clostridium ljungdahlii\",\n    1539: \"Clostridium malenominatum\",\n    1540: \"Clostridioides mangenotii\",\n    1541: \"Terrisporobacter mayombei\",\n    1542: \"Clostridium novyi\",\n    1543: \"Clostridium oceanicum\",\n    1544: \"Faecalicatena orotica\",\n    1547: \"Erysipelatoclostridium ramosum\",\n    1548: \"Clostridium scatologenes\",\n    1549: \"[Clostridium] sporosphaeroides\",\n    1550: \"Clostridium subterminale\",\n    1551: \"Clostridium aurantibutyricum\",\n    1552: \"Clostridium estertheticum subsp. estertheticum\",\n    1553: \"Clostridium tetanomorphum\",\n    1556: \"Gottschalkia acidurici\",\n    1557: \"Peptoclostridium litorale\",\n    1559: \"Clostridium tertium\",\n    1560: \"Moorella thermoautotrophica\",\n    1561: \"Clostridium baratii\",\n    1562: \"Desulfotomaculum\",\n    1563: \"Desulfosporosinus orientis\",\n    1564: \"Desulfotomaculum ruminis\",\n    1565: \"Desulfotomaculum nigrificans\",\n    1566: \"Desulfofundulus australicus\",\n    1567: \"Quinella\",\n    1568: \"Quinella ovalis\",\n    1569: \"Sporosarcina\",\n    1570: \"Halobacillus halophilus\",\n    1571: \"Sporosarcina ureae\",\n    1573: \"Clavibacter\",\n    1575: \"Leifsonia xyli\",\n    1578: \"Lactobacillus\",\n    1579: \"Lactobacillus acidophilus\",\n    1580: \"Lactobacillus brevis\",\n    1581: \"Lactobacillus buchneri\",\n    1582: \"Lactobacillus casei\",\n    1583: \"Weissella confusa\",\n    1584: \"Lactobacillus delbrueckii\",\n    1585: \"Lactobacillus delbrueckii subsp. bulgaricus\",\n    1587: \"Lactobacillus helveticus\",\n    1588: \"Lactobacillus hilgardii\",\n    1589: \"Lactobacillus pentosus\",\n    1590: \"Lactobacillus plantarum\",\n    1591: \"Lactobacillus sp.\",\n    1593: \"Lactobacillus sp. 30A\",\n    1596: \"Lactobacillus gasseri\",\n    1597: \"Lactobacillus paracasei\",\n    1598: \"Lactobacillus reuteri\",\n    1599: \"Lactobacillus sakei\",\n    1600: \"Lactobacillus acetotolerans\",\n    1601: \"Lactobacillus agilis\",\n    1602: \"Lactobacillus alimentarius\",\n    1603: \"Lactobacillus amylophilus\",\n    1604: \"Lactobacillus amylovorus\",\n    1605: \"Lactobacillus animalis\",\n    1606: \"Lactobacillus aviarius\",\n    1607: \"Lactobacillus bifermentans\",\n    1610: \"Lactobacillus coryniformis\",\n    1612: \"Lactobacillus farciminis\",\n    1613: \"Lactobacillus fermentum\",\n    1614: \"Lactobacillus fructivorans\",\n    1615: \"Weissella halotolerans\",\n    1616: \"Weissella kandleri\",\n    1618: \"Lactobacillus mali\",\n    1620: \"Weissella minor\",\n    1622: \"Lactobacillus murinus\",\n    1623: \"Lactobacillus ruminis\",\n    1624: \"Lactobacillus salivarius\",\n    1625: \"Lactobacillus sanfranciscensis\",\n    1626: \"Lactobacillus sharpeae\",\n    1627: \"Lactobacillus thermophilus\",\n    1628: \"Lactobacillus vermiforme\",\n    1629: \"Weissella viridescens\",\n    1630: \"Kandleria vitulina\",\n    1631: \"Fructobacillus fructosus\",\n    1632: \"Lactobacillus oris\",\n    1633: \"Lactobacillus vaginalis\",\n    1634: \"Lactobacillus sakei L45\",\n    1637: \"Listeria\",\n    1638: \"Listeria ivanovii\",\n    1639: \"Listeria monocytogenes\",\n    1640: \"Listeria seeligeri\",\n    1641: \"Listeria grayi\",\n    1642: \"Listeria innocua\",\n    1643: \"Listeria welshimeri\",\n    1645: \"Renibacterium\",\n    1646: \"Renibacterium salmoninarum\",\n    1647: \"Erysipelothrix\",\n    1648: \"Erysipelothrix rhusiopathiae\",\n    1649: \"Kurthia\",\n    1650: \"Kurthia zopfii\",\n    1651: \"Alloiococcus\",\n    1652: \"Alloiococcus otitis\",\n    1653: \"Corynebacteriaceae\",\n    1654: \"Actinomyces\",\n    1655: \"Actinomyces naeslundii\",\n    1656: \"Actinomyces viscosus\",\n    1657: \"Actinobaculum suis\",\n    1658: \"Actinomyces bovis\",\n    1659: \"Actinomyces israelii\",\n    1660: \"Schaalia odontolytica\",\n    1661: \"Trueperella pyogenes\",\n    1663: \"Arthrobacter\",\n    1664: \"Arthrobacter glacialis\",\n    1665: \"Arthrobacter globiformis\",\n    1667: \"Arthrobacter sp.\",\n    1669: \"Arthrobacter sp. NRRL B3728\",\n    1670: \"Arthrobacter citreus\",\n    1671: \"Pseudarthrobacter oxydans\",\n    1672: \"Arthrobacter ramosus\",\n    1673: \"Rhizobium viscosum\",\n    1676: \"Pseudarthrobacter polychromogenes\",\n    1677: \"Arthrobacter pascens\",\n    1678: \"Bifidobacterium\",\n    1679: \"Bifidobacterium longum subsp. longum\",\n    1680: \"Bifidobacterium adolescentis\",\n    1681: \"Bifidobacterium bifidum\",\n    1682: \"Bifidobacterium longum subsp. infantis\",\n    1683: \"Bifidobacterium angulatum\",\n    1684: \"Bifidobacterium asteroides\",\n    1685: \"Bifidobacterium breve\",\n    1686: \"Bifidobacterium catenulatum\",\n    1687: \"Bifidobacterium coryneforme\",\n    1688: \"Bifidobacterium cuniculi\",\n    1689: \"Bifidobacterium dentium\",\n    1690: \"Bifidobacterium pseudolongum subsp. globosum\",\n    1691: \"Bifidobacterium indicum\",\n    1692: \"Bifidobacterium magnum\",\n    1693: \"Bifidobacterium minimum\",\n    1694: \"Bifidobacterium pseudolongum\",\n    1695: \"Bifidobacterium longum subsp. suis\",\n    1696: \"Brevibacterium\",\n    1697: \"Corynebacterium ammoniagenes\",\n    1698: \"Brevibacterium epidermidis\",\n    1701: \"Brevibacterium sp.\",\n    1702: \"Brevibacterium sterolicum\",\n    1703: \"Brevibacterium linens\",\n    1704: \"Brevibacterium helvolum\",\n    1705: \"Corynebacterium stationis\",\n    1707: \"Cellulomonas\",\n    1708: \"Cellulomonas fimi\",\n    1709: \"Cellulomonas biazotea\",\n    1710: \"Cellulosimicrobium cellulans\",\n    1711: \"Cellulomonas flavigena\",\n    1712: \"Cellulomonas gelida\",\n    1713: \"Oerskovia turbata\",\n    1714: \"Cellulomonas uda\",\n    1716: \"Corynebacterium\",\n    1717: \"Corynebacterium diphtheriae\",\n    1718: \"Corynebacterium glutamicum\",\n    1719: \"Corynebacterium pseudotuberculosis\",\n    1720: \"Corynebacterium sp.\",\n    1721: \"Corynebacterium callunae\",\n    1722: \"Corynebacterium nephridii\",\n    1724: \"Corynebacterium renale\",\n    1725: \"Corynebacterium xerosis\",\n    1727: \"Corynebacterium variabile\",\n    1728: \"coryneform bacterium\",\n    1730: \"Eubacterium\",\n    1731: \"Peptoclostridium acidaminophilum\",\n    1732: \"Eubacterium oxidoreducens\",\n    1733: \"uncultured bacterium 'eubacterium sp.'\",\n    1735: \"Holdemanella biformis\",\n    1736: \"Eubacterium limosum\",\n    1737: \"[Eubacterium] tenue\",\n    1740: \"Thermodesulfobacterium\",\n    1741: \"Thermodesulfobacterium commune\",\n    1743: \"Propionibacterium\",\n    1744: \"Propionibacterium freudenreichii\",\n    1747: \"Cutibacterium acnes\",\n    1748: \"Acidipropionibacterium acidipropionici\",\n    1749: \"Acidipropionibacterium jensenii\",\n    1750: \"Pseudopropionibacterium propionicum\",\n    1751: \"Acidipropionibacterium thoenii\",\n    1752: \"Propionibacterium freudenreichii subsp. shermanii\",\n    1753: \"Propioniferax innocua\",\n    1754: \"Thermoanaerobacter\",\n    1755: \"Thermoanaerobacter sp.\",\n    1757: \"Thermoanaerobacter ethanolicus\",\n    1760: \"Actinobacteria\",\n    1762: \"Mycobacteriaceae\",\n    1763: \"Mycobacterium\",\n    1764: \"Mycobacterium avium\",\n    1765: \"Mycobacterium tuberculosis variant bovis\",\n    1766: \"Mycolicibacterium fortuitum\",\n    1767: \"Mycobacterium intracellulare\",\n    1768: \"Mycobacterium kansasii\",\n    1769: \"Mycobacterium leprae\",\n    1770: \"Mycobacterium avium subsp. paratuberculosis\",\n    1771: \"Mycolicibacterium phlei\",\n    1772: \"Mycolicibacterium smegmatis\",\n    1773: \"Mycobacterium tuberculosis\",\n    1774: \"Mycobacteroides chelonae\",\n    1775: \"Mycobacterium cookii\",\n    1776: \"Mycolicibacterium flavescens\",\n    1777: \"Mycobacterium gastri\",\n    1778: \"Mycobacterium gordonae\",\n    1779: \"Mycolicibacterium komossense\",\n    1780: \"Mycobacterium malmoense\",\n    1781: \"Mycobacterium marinum\",\n    1782: \"Mycolicibacter nonchromogenicus\",\n    1783: \"Mycobacterium scrofulaceum\",\n    1784: \"Mycobacterium simiae\",\n    1785: \"Mycobacterium sp.\",\n    1786: \"Mycolicibacterium sphagni\",\n    1787: \"Mycobacterium szulgai\",\n    1788: \"Mycolicibacter terrae\",\n    1789: \"Mycobacterium xenopi\",\n    1790: \"Mycobacterium asiaticum\",\n    1791: \"Mycolicibacterium aurum\",\n    1792: \"Mycolicibacterium chitae\",\n    1793: \"Mycolicibacterium fallax\",\n    1794: \"Mycolicibacterium gadium\",\n    1795: \"Mycolicibacterium neoaurum\",\n    1796: \"Mycolicibacterium senegalense\",\n    1797: \"Mycolicibacterium thermoresistibile\",\n    1798: \"Mycolicibacillus trivialis\",\n    1799: \"Mycolicibacterium aichiense\",\n    1800: \"Mycolicibacterium chubuense\",\n    1801: \"Mycolicibacterium diernhoferi\",\n    1802: \"Mycolicibacterium farcinogenes\",\n    1804: \"Mycolicibacterium gilvum\",\n    1806: \"Mycobacterium tuberculosis variant microti\",\n    1807: \"Mycolicibacterium obuense\",\n    1809: \"Mycobacterium ulcerans\",\n    1810: \"Mycolicibacterium vaccae\",\n    1811: \"Mycobacterium hyorhinis\",\n    1813: \"Amycolatopsis\",\n    1814: \"Amycolatopsis methanolica\",\n    1816: \"Actinokineospora fastidiosa\",\n    1817: \"Nocardia\",\n    1818: \"Nocardia globerula\",\n    1821: \"Nocardia sp.\",\n    1822: \"Nocardia vaccinii\",\n    1823: \"Nocardia otitidiscaviarum\",\n    1824: \"Nocardia asteroides\",\n    1827: \"Rhodococcus\",\n    1828: \"Rhodococcus fascians\",\n    1829: \"Rhodococcus rhodochrous\",\n    1830: \"Rhodococcus ruber\",\n    1831: \"Rhodococcus sp.\",\n    1833: \"Rhodococcus erythropolis\",\n    1835: \"Saccharopolyspora\",\n    1836: \"Saccharopolyspora erythraea\",\n    1837: \"Saccharopolyspora hirsuta\",\n    1838: \"Saccharopolyspora hordei\",\n    1839: \"Nocardioides\",\n    1841: \"Nocardioides albus\",\n    1843: \"Nocardioides jensenii\",\n    1844: \"Nocardioides luteus\",\n    1847: \"Pseudonocardia\",\n    1848: \"Pseudonocardia thermophila\",\n    1849: \"Actinopolyspora\",\n    1850: \"Actinopolyspora halophila\",\n    1851: \"Saccharomonospora\",\n    1852: \"Saccharomonospora viridis\",\n    1854: \"Frankia\",\n    1855: \"Frankia sp.\",\n    1856: \"Frankia torreyi\",\n    1857: \"Frankia sp. FaC1\",\n    1858: \"Frankia sp. ArI3\",\n    1859: \"Frankia alni\",\n    1860: \"Geodermatophilus\",\n    1861: \"Geodermatophilus obscurus\",\n    1862: \"Dermatophilus\",\n    1863: \"Dermatophilus congolensis\",\n    1865: \"Actinoplanes\",\n    1866: \"Actinoplanes missouriensis\",\n    1867: \"Actinoplanes teichomyceticus\",\n    1868: \"Actinoplanes digitatis\",\n    1869: \"Actinoplanes utahensis\",\n    1871: \"Actinoplanes sp.\",\n    1872: \"Actinoplanes sp. ATCC 31351\",\n    1873: \"Micromonospora\",\n    1874: \"Micromonospora chalcea\",\n    1876: \"Micromonospora sp.\",\n    1877: \"Micromonospora echinospora\",\n    1878: \"Micromonospora rosea\",\n    1879: \"Micromonospora zionensis\",\n    1880: \"Micromonospora olivasterospora\",\n    1881: \"Micromonospora viridifaciens\",\n    1883: \"Streptomyces\",\n    1884: \"Streptomyces acrimycini\",\n    1885: \"Streptomyces actuosus\",\n    1886: \"Streptomyces albidoflavus\",\n    1887: \"Streptomyces albogriseolus\",\n    1888: \"Streptomyces albus\",\n    1889: \"Streptomyces ambofaciens\",\n    1890: \"Streptomyces antibioticus\",\n    1891: \"Streptomyces antifibrinolyticus\",\n    1892: \"Streptomyces anulatus\",\n    1893: \"Streptomyces atratus\",\n    1894: \"Kitasatospora aureofaciens\",\n    1895: \"Streptomyces avidinii\",\n    1896: \"Streptomyces bikiniensis\",\n    1897: \"Streptomyces carzinostaticus\",\n    1898: \"Streptomyces cacaoi\",\n    1900: \"Streptomyces cinnamonensis\",\n    1901: \"Streptomyces clavuligerus\",\n    1902: \"Streptomyces coelicolor\",\n    1903: \"Streptomyces corchorusii\",\n    1904: \"Streptomyces cyaneus\",\n    1905: \"Streptomyces exfoliatus\",\n    1906: \"Streptomyces fradiae\",\n    1907: \"Streptomyces glaucescens\",\n    1908: \"Streptomyces globisporus\",\n    1909: \"Streptomyces griseolus\",\n    1910: \"Streptomyces griseosporeus\",\n    1911: \"Streptomyces griseus\",\n    1912: \"Streptomyces hygroscopicus\",\n    1913: \"Amycolatopsis lactamdurans\",\n    1914: \"Streptomyces lavendulae\",\n    1915: \"Streptomyces lincolnensis\",\n    1916: \"Streptomyces lividans\",\n    1917: \"Streptomyces macromomyceticus\",\n    1918: \"Streptomyces malayensis\",\n    1919: \"Streptomyces microflavus\",\n    1920: \"Streptomyces nigrescens\",\n    1921: \"Streptomyces olivaceoviridis\",\n    1922: \"Streptomyces plicatus\",\n    1923: \"Streptomyces phaeochromogenes\",\n    1924: \"Streptomyces purpurascens\",\n    1925: \"Streptomyces ramocissimus\",\n    1926: \"Streptomyces reticuli\",\n    1927: \"Streptomyces rimosus\",\n    1928: \"Streptomyces rochei\",\n    1929: \"Streptomyces rubiginosus\",\n    1930: \"Streptomyces scabiei\",\n    1931: \"Streptomyces sp.\",\n    1932: \"Streptomyces tendae\",\n    1933: \"Streptoalloteichus tenebrarius\",\n    1934: \"Streptomyces thermovulgaris\",\n    1935: \"Streptomyces violaceoruber\",\n    1936: \"Streptomyces violaceus\",\n    1938: \"Streptomyces viridochromogenes\",\n    1940: \"Streptomyces albireticuli\",\n    1941: \"Streptomyces badius\",\n    1942: \"Streptomyces goshikiensis\",\n    1943: \"Streptomyces griseoruber\",\n    1944: \"Streptomyces halstedii\",\n    1945: \"Streptomyces jumonjinensis\",\n    1946: \"Streptomyces kasugaensis\",\n    1947: \"Streptomyces limosus\",\n    1948: \"Streptomyces longisporus\",\n    1949: \"Streptomyces mycarofaciens\",\n    1950: \"Streptomyces peucetius\",\n    1951: \"Streptomyces purpureus\",\n    1952: \"Streptomyces thermoviolaceus\",\n    1954: \"Streptomyces brasiliensis\",\n    1955: \"Streptomyces cinereus\",\n    1956: \"Streptomyces diastaticus\",\n    1957: \"Streptomyces sclerotialus\",\n    1958: \"Streptomyces sp. K15\",\n    1960: \"Streptomyces vinaceus\",\n    1961: \"Streptomyces virginiae\",\n    1962: \"Streptomyces albus G\",\n    1963: \"Streptomyces olivochromogenes\",\n    1965: \"Streptomyces espinosus\",\n    1967: \"Streptomyces kanamyceticus\",\n    1968: \"Streptomyces cellulosae\",\n    1969: \"Streptomyces chartreusis\",\n    1970: \"Streptomyces morookaense\",\n    1971: \"Streptomyces noursei\",\n    1972: \"Streptomyces roseiscleroticus\",\n    1988: \"Actinomadura\",\n    1989: \"Actinomadura sp.\",\n    1990: \"Actinomadura atramentaria\",\n    1991: \"Actinomadura cremea\",\n    1992: \"Actinomadura echinospora\",\n    1993: \"Actinomadura madurae\",\n    1994: \"Actinomadura rugatobispora\",\n    1995: \"Microtetraspora\",\n    1996: \"Microtetraspora glauca\",\n    1997: \"Microtetraspora fusca\",\n    1998: \"Planomonospora\",\n    1999: \"Planomonospora venezuelensis\",\n    2000: \"Streptosporangium\",\n    2001: \"Streptosporangium roseum\",\n    2002: \"Streptosporangium amethystogenes\",\n    2004: \"Streptosporangiaceae\",\n    2005: \"Microbispora\",\n    2006: \"Thermobispora bispora\",\n    2012: \"Thermomonosporaceae\",\n    2013: \"Nocardiopsis\",\n    2014: \"Nocardiopsis dassonvillei\",\n    2015: \"Nocardiopsis prasina\",\n    2016: \"Streptoalloteichus\",\n    2017: \"Streptoalloteichus hindustanus\",\n    2019: \"Thermomonospora\",\n    2020: \"Thermomonospora curvata\",\n    2021: \"Thermobifida fusca\",\n    2023: \"Thermoactinomyces\",\n    2024: \"Thermoactinomyces intermedius\",\n    2025: \"Thermoactinomyces sp.\",\n    2026: \"Thermoactinomyces vulgaris\",\n    2029: \"Kibdelosporangium\",\n    2030: \"Kibdelosporangium aridum\",\n    2033: \"Microbacterium testaceum\",\n    2034: \"Curtobacterium\",\n    2035: \"Curtobacterium flaccumfaciens\",\n    2036: \"Curtobacterium citreum\",\n    2037: \"Actinomycetales\",\n    2038: \"Tropheryma\",\n    2039: \"Tropheryma whipplei\",\n    2040: \"Aeromicrobium\",\n    2041: \"Aeromicrobium erythreum\",\n    2044: \"Pimelobacter\",\n    2045: \"Pimelobacter simplex\",\n    2047: \"Rothia dentocariosa\",\n    2049: \"Actinomycetaceae\",\n    2050: \"Mobiluncus\",\n    2051: \"Mobiluncus curtisii\",\n    2052: \"Mobiluncus mulieris\",\n    2053: \"Gordonia\",\n    2054: \"Gordonia bronchialis\",\n    2055: \"Gordonia terrae\",\n    2056: \"Sphaerobacter\",\n    2057: \"Sphaerobacter thermophilus\",\n    2060: \"Tsukamurella\",\n    2061: \"Tsukamurella paurometabola\",\n    2062: \"Streptomycetaceae\",\n    2063: \"Kitasatospora\",\n    2064: \"Kitasatospora griseola\",\n    2065: \"Kitasatospora phosalacinea\",\n    2066: \"Kitasatospora setae\",\n    2070: \"Pseudonocardiaceae\",\n    2071: \"Saccharothrix\",\n    2072: \"Saccharothrix australiensis\",\n    2074: \"Pseudonocardia autotrophica\",\n    2075: \"Pseudonocardia nitrificans\",\n    2077: \"Sporolactobacillus\",\n    2078: \"Sporolactobacillus inulinus\",\n    2080: \"Sporolactobacillus laevus\",\n    2082: \"Syntrophomonas bryantii\",\n    2085: \"Mycoplasmatales\",\n    2086: \"Anaeroplasma\",\n    2087: \"Anaeroplasma abactoclasticum\",\n    2088: \"Anaeroplasma bactoclasticum\",\n    2089: \"Anaeroplasma varium\",\n    2090: \"Anaeroplasma intermedium\",\n    2092: \"Mycoplasmataceae\",\n    2093: \"Mycoplasma\",\n    2094: \"Mycoplasma arginini\",\n    2095: \"Mycoplasma capricolum\",\n    2096: \"Mycoplasma gallisepticum\",\n    2097: \"Mycoplasma genitalium\",\n    2098: \"Mycoplasma hominis\",\n    2099: \"Mycoplasma hyopneumoniae\",\n    2100: \"Mycoplasma hyorhinis\",\n    2101: \"Mycoplasma incognitus\",\n    2102: \"Mycoplasma mycoides\",\n    2103: \"Mycoplasma mycoides subsp. mycoides\",\n    2104: \"Mycoplasma pneumoniae\",\n    2105: \"Mycoplasma leachii\",\n    2106: \"Mycoplasma corogypsi\",\n    2107: \"Mycoplasma pulmonis\",\n    2108: \"Mycoplasma sp.\",\n    2109: \"Mycoplasma synoviae\",\n    2110: \"Mycoplasma agalactiae\",\n    2111: \"Mycoplasma arthritidis\",\n    2112: \"Mycoplasma bovigenitalium\",\n    2113: \"Mycoplasma californicum\",\n    2114: \"Entomoplasma ellychniae\",\n    2115: \"Mycoplasma fermentans\",\n    2116: \"Mycoplasma iowae\",\n    2117: \"Mycoplasma lipophilum\",\n    2118: \"Mycoplasma mobile\",\n    2119: \"Mycoplasma muris\",\n    2120: \"Mycoplasma neurolyticum\",\n    2121: \"Mycoplasma orale\",\n    2122: \"Mycoplasma pirum\",\n    2123: \"Mycoplasma putrefaciens\",\n    2124: \"Mycoplasma salivarium\",\n    2125: \"Mycoplasma sualvi\",\n    2127: \"Mycoplasma collis\",\n    2128: \"Mycoplasma flocculare\",\n    2129: \"Ureaplasma\",\n    2130: \"Ureaplasma urealyticum\",\n    2131: \"Spiroplasmataceae\",\n    2132: \"Spiroplasma\",\n    2133: \"Spiroplasma citri\",\n    2134: \"Spiroplasma melliferum\",\n    2135: \"Spiroplasma sp.\",\n    2136: \"Spiroplasma monobiae\",\n    2137: \"Spiroplasma apis\",\n    2138: \"Spiroplasma poulsonii\",\n    2139: \"Spiroplasma clarkii\",\n    2141: \"Spiroplasma ixodetis\",\n    2142: \"Spiroplasma diabroticae\",\n    2143: \"Spiroplasma gladiatoris\",\n    2144: \"Spiroplasma mirum\",\n    2145: \"Spiroplasma taiwanense\",\n    2146: \"Acholeplasmataceae\",\n    2147: \"Acholeplasma\",\n    2148: \"Acholeplasma laidlawii\",\n    2149: \"Mesoplasma entomophilum\",\n    2150: \"Acholeplasma modicum\",\n    2151: \"Mesoplasma florum\",\n    2152: \"Asteroleplasma\",\n    2153: \"Asteroleplasma anaerobium\",\n    2155: \"Candidatus Phytoplasma sp.\",\n    2157: \"Archaea\",\n    2158: \"Methanobacteriales\",\n    2159: \"Methanobacteriaceae\",\n    2160: \"Methanobacterium\",\n    2161: \"Methanobacterium bryantii\",\n    2162: \"Methanobacterium formicicum\",\n    2163: \"Methanobacterium ivanovii\",\n    2164: \"Methanobacterium sp.\",\n    2171: \"Methanobacterium palustre\",\n    2172: \"Methanobrevibacter\",\n    2173: \"Methanobrevibacter smithii\",\n    2174: \"Metopus palaeformis endosymbiont\",\n    2175: \"Methanohalophilus\",\n    2176: \"Methanohalophilus mahii\",\n    2177: \"Methanohalophilus halophilus\",\n    2178: \"Methanothermaceae\",\n    2179: \"Methanothermus\",\n    2180: \"Methanothermus fervidus\",\n    2181: \"Methanothermus sociabilis\",\n    2182: \"Methanococcales\",\n    2183: \"Methanococcaceae\",\n    2184: \"Methanococcus\",\n    2186: \"Methanothermococcus thermolithotrophicus\",\n    2187: \"Methanococcus vannielii\",\n    2188: \"Methanococcus voltae\",\n    2189: \"Methanotorris igneus\",\n    2190: \"Methanocaldococcus jannaschii\",\n    2191: \"Methanomicrobiales\",\n    2192: \"Methanocorpusculum\",\n    2193: \"Methanocorpusculum parvum\",\n    2194: \"Methanomicrobiaceae\",\n    2195: \"Methanogenium\",\n    2196: \"Methanogenium sp.\",\n    2197: \"Methanogenium cariaci\",\n    2198: \"Methanoculleus marisnigri\",\n    2199: \"Methanogenium organophilum\",\n    2200: \"Methanoculleus thermophilus\",\n    2201: \"Methanofollis liminatans\",\n    2202: \"Methanospirillum\",\n    2203: \"Methanospirillum hungatei\",\n    2204: \"Methanomicrobium\",\n    2205: \"Methanomicrobium mobile\",\n    2206: \"Methanosarcinaceae\",\n    2207: \"Methanosarcina\",\n    2208: \"Methanosarcina barkeri\",\n    2209: \"Methanosarcina mazei\",\n    2210: \"Methanosarcina thermophila\",\n    2213: \"Methanosarcina sp.\",\n    2214: \"Methanosarcina acetivorans\",\n    2215: \"Methanosarcina vacuolata\",\n    2220: \"Methanolobus\",\n    2221: \"Methanolobus tindarius\",\n    2222: \"Methanothrix\",\n    2223: \"Methanothrix soehngenii\",\n    2224: \"Methanothrix thermoacetophila\",\n    2225: \"Methanococcoides\",\n    2226: \"Methanococcoides methylutens\",\n    2231: \"Archaeoglobales\",\n    2232: \"Archaeoglobaceae\",\n    2233: \"Archaeoglobus\",\n    2234: \"Archaeoglobus fulgidus\",\n    2235: \"Halobacteriales\",\n    2236: \"Halobacteriaceae\",\n    2237: \"Haloarcula\",\n    2238: \"Haloarcula marismortui\",\n    2239: \"Halobacterium\",\n    2242: \"Halobacterium salinarum\",\n    2243: \"Halobacterium sp.\",\n    2246: \"Haloferax volcanii\",\n    2247: \"Halorubrum lacusprofundi\",\n    2248: \"Halorubrum saccharovorum\",\n    2249: \"Halococcus\",\n    2250: \"Halococcus morrhuae\",\n    2251: \"Haloferax\",\n    2252: \"Haloferax mediterranei\",\n    2253: \"Haloferax sp.\",\n    2254: \"Haloferax lucentense\",\n    2256: \"Natronobacterium\",\n    2257: \"Natronomonas pharaonis\",\n    2258: \"Thermococcales\",\n    2259: \"Thermococcaceae\",\n    2260: \"Pyrococcus\",\n    2261: \"Pyrococcus furiosus\",\n    2262: \"Pyrococcus woesei\",\n    2263: \"Thermococcus\",\n    2264: \"Thermococcus celer\",\n    2265: \"Thermococcus litoralis\",\n    2266: \"Thermoproteales\",\n    2267: \"Thermoproteaceae\",\n    2268: \"Thermofilum\",\n    2269: \"Thermofilum pendens\",\n    2270: \"Thermoproteus\",\n    2271: \"Thermoproteus tenax\",\n    2272: \"Desulfurococcaceae\",\n    2273: \"Desulfurococcus\",\n    2275: \"Desulfurococcus mucosus\",\n    2276: \"Pyrobaculum\",\n    2277: \"Pyrobaculum islandicum\",\n    2278: \"Pyrobaculum organotrophum\",\n    2279: \"Staphylothermus\",\n    2280: \"Staphylothermus marinus\",\n    2281: \"Sulfolobales\",\n    2283: \"Acidianus ambivalens\",\n    2284: \"Sulfolobus\",\n    2285: \"Sulfolobus acidocaldarius\",\n    2286: \"Saccharolobus shibatae\",\n    2287: \"Saccharolobus solfataricus\",\n    2288: \"Sulfolobus sp.\",\n    2289: \"Desulfobacter\",\n    2290: \"Desulfobacter curvatus\",\n    2291: \"Desulfobacter hydrogenophilus\",\n    2292: \"Desulfobacter latus\",\n    2293: \"Desulfobacter postgatei\",\n    2294: \"Desulfobacter sp.\",\n    2295: \"Desulfobacterium\",\n    2296: \"Desulfobacterium autotrophicum\",\n    2297: \"Desulfobacterium niacini\",\n    2298: \"Desulfobacterium vacuolatum\",\n    2299: \"Desulfosarcina\",\n    2300: \"Desulfosarcina variabilis\",\n    2301: \"Thermoplasmatales\",\n    2302: \"Thermoplasma\",\n    2303: \"Thermoplasma acidophilum\",\n    2306: \"archaeal group 2\",\n    2307: \"Pyrodictiaceae\",\n    2308: \"Pyrodictium\",\n    2309: \"Pyrodictium occultum\",\n    2312: \"Trimyema sp. archaeal symbiont\",\n    2314: \"Methanoplanus\",\n    2315: \"Methanoplanus limicola\",\n    2316: \"Methanosphaera\",\n    2317: \"Methanosphaera stadtmanae\",\n    2319: \"Methanopyrus\",\n    2320: \"Methanopyrus kandleri\",\n    2321: \"Methanohalobium\",\n    2322: \"Methanohalobium evestigatum\",\n    2323: \"unclassified Bacteria\",\n    2325: \"Thermoanaerobacter kivui\",\n    2326: \"Alvinoconcha hessleri symbiotic bacterium\",\n    2327: \"Methylophilus methylotrophus W3A1\",\n    2330: \"Halanaerobium\",\n    2331: \"Halanaerobium praevalens\",\n    2332: \"Propionigenium\",\n    2333: \"Propionigenium modestum\",\n    2334: \"Bacillus sp. PS3\",\n    2335: \"Thermotoga\",\n    2336: \"Thermotoga maritima\",\n    2337: \"Thermotoga neapolitana\",\n    2339: \"Thyasira flexuosa gill symbiont\",\n    2340: \"Solemya velum gill symbiont\",\n    2341: \"primary endosymbiont of Sitophilus zeamais\",\n    2342: \"Candidatus Sodalis pierantonius str. SOPE\",\n    2343: \"endosymbiont of Rhinocyllus conicus\",\n    2344: \"Methylosporovibrio\",\n    2345: \"Methylosporovibrio methanica\",\n    2347: \"Iron sulfide-containing magnetotactic bacterium\",\n    2349: \"Haliscomenobacter\",\n    2350: \"Haliscomenobacter hydrossis\",\n    2351: \"Flexistipes\",\n    2352: \"Flexistipes sinusarabici\",\n    2353: \"Flexispira\",\n    2354: \"Flexispira rappini\",\n    2355: \"unidentified bacterial endosymbiont\",\n    2357: \"Desulfomonile\",\n    2358: \"Desulfomonile tiedjei\",\n    2360: \"Bathymodiolus thermophilus thioautotrophic gill symbiont\",\n    2361: \"Calyptogena magnifica symbiont\",\n    2362: \"Codakia orbicularis gill symbiont\",\n    2363: \"Lucinoma aequizonata gill symbiont\",\n    2364: \"Lucinoma annulata gill symbiont\",\n    2365: \"Riftia pachyptila trophosome symbiont\",\n    2366: \"endosymbiont of Bangasternus orientalis\",\n    2368: \"Arhodomonas\",\n    2369: \"Arhodomonas aquaeolei\",\n    2370: \"Xylella\",\n    2371: \"Xylella fastidiosa\",\n    2373: \"Acetonema\",\n    2374: \"Acetonema longum\",\n    2375: \"Sporomusa\",\n    2376: \"Sporomusa paucivorans\",\n    2377: \"Sporomusa termitida\",\n    2378: \"Sporomusa ovata\",\n    2382: \"Acetitomaculum ruminis\",\n    2383: \"Epulopiscium\",\n    2384: \"Epulopiscium sp.\",\n    2387: \"transposons\",\n    2388: \"Transposon Tn-cam204\",\n    2389: \"Transposon Tn10\",\n    2390: \"Transposon Tn1331\",\n    2391: \"Transposon Tn1525\",\n    2392: \"Transposon Tn1681\",\n    2393: \"Transposon Tn1696\",\n    2394: \"Transposon Tn1721\",\n    2395: \"Transposon Tn21\",\n    2396: \"Transposon Tn2426\",\n    2397: \"Transposon Tn2501\",\n    2398: \"Transposon Tn2680\",\n    2399: \"Transposon Tn2921\",\n    2400: \"Transposon Tn3411\",\n    2401: \"Transposon Tn3\",\n    2402: \"Transposon Tn431\",\n    2403: \"Transposon Tn4351\",\n    2404: \"Transposon Tn4521\",\n    2405: \"Transposon Tn4551\",\n    2406: \"Transposon Tn4556\",\n    2407: \"Transposon Tn501\",\n    2408: \"Transposon Tn5053\",\n    2409: \"Transposon Tn5393\",\n    2410: \"Transposon Tn554\",\n    2411: \"Transposon Tn5\",\n    2412: \"Transposon Tn602\",\n    2413: \"Transposon Tn7\",\n    2414: \"Transposon Tn903\",\n    2415: \"Transposon Tn916\",\n    2416: \"Transposon Tn917\",\n    2417: \"Transposon Tn9\",\n    2418: \"Transposon gamma-delta\",\n    2419: \"Thermotogales\",\n    2420: \"Thermosipho\",\n    2421: \"Thermosipho africanus\",\n    2422: \"Fervidobacterium\",\n    2423: \"Fervidobacterium islandicum\",\n    2424: \"Fervidobacterium nodosum\",\n    2425: \"Teredinibacter\",\n    2426: \"Teredinibacter turnerae\",\n    2428: \"TOL plasmid\",\n    2429: \"Solemya reidi gill symbiont\",\n    2433: \"Roseobacter\",\n    2434: \"Roseobacter denitrificans\",\n    2436: \"Plasmid CloDF13\",\n    2437: \"Plasmid ColA-CA31\",\n    2438: \"Plasmid ColA\",\n    2439: \"Plasmid ColB2\",\n    2440: \"Plasmid ColB4\",\n    2441: \"Plasmid ColBM-Cl139\",\n    2442: \"Plasmid ColD\",\n    2443: \"Plasmid ColE1\",\n    2446: \"Plasmid ColE2\",\n    2447: \"Plasmid ColE3-CA38\",\n    2448: \"Plasmid ColE5-099\",\n    2449: \"Plasmid ColE6-CT14\",\n    2450: \"Plasmid ColE7\",\n    2451: \"Plasmid ColE8\",\n    2452: \"Plasmid ColE9\",\n    2453: \"Plasmid ColIa\",\n    2454: \"Plasmid ColIb-P9\",\n    2455: \"Plasmid ColIb\",\n    2456: \"Plasmid ColK\",\n    2457: \"Plasmid ColV-K30\",\n    2458: \"Plasmid ColV2-K94\",\n    2459: \"Plasmid ColV3-K30\",\n    2460: \"Plasmid ColVBtrp\",\n    2461: \"Plasmid ColV\",\n    2462: \"Plasmid ENTR\",\n    2463: \"Plasmid ENT\",\n    2464: \"Plasmid EWD 299\",\n    2465: \"Plasmid F\",\n    2466: \"Plasmid NAH7\",\n    2467: \"Plasmid NR1\",\n    2468: \"Plasmid NR79\",\n    2469: \"Plasmid NTP16\",\n    2470: \"Plasmid P15a\",\n    2471: \"Plasmid P1\",\n    2472: \"Plasmid P307\",\n    2473: \"Plasmid P6\",\n    2474: \"Plasmid PDS075\",\n    2476: \"Plasmid R1-19\",\n    2477: \"Plasmid R1033\",\n    2478: \"Plasmid R1162\",\n    2479: \"Plasmid R124\",\n    2480: \"Plasmid R144\",\n    2481: \"Plasmid R1767\",\n    2482: \"Plasmid R1\",\n    2483: \"Plasmid R26\",\n    2484: \"Plasmid R27\",\n    2485: \"Plasmid R386\",\n    2486: \"Plasmid R387\",\n    2487: \"Plasmid R401\",\n    2488: \"Plasmid R46\",\n    2489: \"Plasmid R483\",\n    2490: \"Plasmid R485\",\n    2491: \"Plasmid R538\",\n    2492: \"Plasmid R64\",\n    2493: \"Plasmid R65\",\n    2494: \"Plasmid R67\",\n    2495: \"Plasmid R6K\",\n    2496: \"Plasmid R751\",\n    2497: \"Plasmid R773\",\n    2498: \"Plasmid R974\",\n    2499: \"Plasmid RGN238\",\n    2500: \"Plasmid RI13\",\n    2501: \"Plasmid RK2Te-r\",\n    2502: \"Plasmid RK2\",\n    2503: \"Plasmid RP4\",\n    2504: \"Plasmid RSF1010\",\n    2505: \"Plasmid RSF1030\",\n    2506: \"Plasmid Ri\",\n    2507: \"Plasmid Rts1\",\n    2508: \"Plasmid R\",\n    2509: \"Plasmid SCP1\",\n    2510: \"Plasmid SLP1\",\n    2511: \"Plasmid SYM\",\n    2512: \"Plasmid Ti\",\n    2513: \"Plasmid incB\",\n    2514: \"Plasmid incI-1\",\n    2515: \"Plasmid incI-gamma\",\n    2516: \"Plasmid p42d\",\n    2517: \"Sequencing vector pAA3.7X\",\n    2518: \"Plasmid pAC27\",\n    2520: \"Plasmid pAD1\",\n    2522: \"Plasmid pAL5000\",\n    2523: \"Plasmid pAM-beta-1\",\n    2524: \"Plasmid pAM77\",\n    2525: \"Plasmid pAZ1\",\n    2526: \"Plasmid pBAA1\",\n    2527: \"Plasmid pBC16\",\n    2528: \"Plasmid pBC1\",\n    2530: \"Plasmid pBP60-1\",\n    2531: \"Plasmid pBS2\",\n    2532: \"Plasmid pBWH77\",\n    2534: \"Plasmid pC194\",\n    2535: \"Plasmid pC30il\",\n    2536: \"Plasmid pCD1\",\n    2538: \"Plasmid pCHL1\",\n    2540: \"Plasmid pCMS1\",\n    2541: \"Plasmid pCN2\",\n    2542: \"Plasmid pCN3\",\n    2543: \"Plasmid pCU1\",\n    2544: \"Plasmid pColBM-C1139\",\n    2546: \"Plasmid pDK1\",\n    2547: \"Plasmid pDU1358\",\n    2548: \"Plasmid pDU1\",\n    2549: \"Plasmid pE194\",\n    2550: \"Plasmid pEA3\",\n    2551: \"Plasmid pED208\",\n    2552: \"Plasmid pEP2\",\n    2553: \"Plasmid pEST1226\",\n    2554: \"Plasmid pEX102\",\n    2555: \"Plasmid pF166\",\n    2556: \"Plasmid pFA3\",\n    2557: \"Plasmid pGS05\",\n    2558: \"Plasmid pHG1\",\n    2560: \"Plasmid pHH502\",\n    2561: \"Plasmid pHH507\",\n    2562: \"Plasmid pHV2\",\n    2564: \"Plasmid pI258\",\n    2565: \"Plasmid pIB485\",\n    2566: \"Plasmid pIE545\",\n    2567: \"Plasmid pIJ101\",\n    2568: \"Plasmid pIM13\",\n    2570: \"Plasmid pIP1433\",\n    2571: \"Plasmid pIP1527\",\n    2573: \"Plasmid pIP404\",\n    2574: \"Plasmid pIP501\",\n    2575: \"Plasmid pIP630\",\n    2576: \"Plasmid pIP816\",\n    2577: \"Plasmid pJD1\",\n    2578: \"Plasmid pJHC-MW1\",\n    2580: \"Plasmid pJP4\",\n    2581: \"Plasmid pJR225\",\n    2582: \"Plasmid pJS37\",\n    2584: \"Plasmid pKLH104\",\n    2585: \"Plasmid pKLH1\",\n    2586: \"Plasmid pKLH202\",\n    2588: \"Plasmid pKM101\",\n    2589: \"Plasmid pKY1\",\n    2590: \"Plasmid pKYM\",\n    2591: \"Plasmid pLAB1000\",\n    2592: \"Plasmid pLB1\",\n    2593: \"Plasmid pLP1\",\n    2594: \"Plasmid pLS11\",\n    2595: \"Plasmid pLS1\",\n    2596: \"Plasmid pME2001\",\n    2597: \"Plasmid pMEA100\",\n    2598: \"Plasmid pMK157\",\n    2599: \"Plasmid pMM110\",\n    2600: \"Plasmid pMM237\",\n    2601: \"Recombinant plasmid pMM25-3\",\n    2602: \"Recombinant plasmid pMM5-3\",\n    2603: \"Recombinant plasmid pMM5-5\",\n    2604: \"Plasmid pMON234\",\n    2605: \"Plasmid pMU707\",\n    2606: \"Plasmid pMV158\",\n    2607: \"Plasmid pMYSH6000\",\n    2608: \"Plasmid pNE131\",\n    2609: \"Plasmid pNG2\",\n    2611: \"Plasmid pNRC100\",\n    2612: \"Plasmid pNS1981\",\n    2613: \"Plasmid pNS1\",\n    2616: \"Plasmid pRA1\",\n    2618: \"Plasmid pRE-I\",\n    2619: \"Plasmid pRJF1\",\n    2620: \"Plasmid pSA209\",\n    2621: \"Plasmid pSA2100\",\n    2622: \"Plasmid pSAM2\",\n    2623: \"Plasmid pSB24.2\",\n    2624: \"Plasmid pSBK203\",\n    2625: \"Plasmid pSC101\",\n    2626: \"Plasmid pSE211\",\n    2627: \"Plasmid pSG1\",\n    2628: \"Plasmid pSK11L\",\n    2629: \"Plasmid pSL1\",\n    2630: \"Plasmid pSL2\",\n    2631: \"Plasmid pSLP124\",\n    2632: \"Plasmid pSM32\",\n    2633: \"Plasmid pSMB74\",\n    2636: \"Plasmid pSX267\",\n    2637: \"Plasmid pSa\",\n    2638: \"Plasmid pT181\",\n    2639: \"Plasmid pT48\",\n    2641: \"Plasmid pTB913\",\n    2642: \"Plasmid pTD1\",\n    2643: \"Plasmid pTF-FC2\",\n    2645: \"Plasmid pTiA6\",\n    2646: \"Plasmid pTiAB3\",\n    2647: \"Plasmid pTiAch5\",\n    2648: \"Plasmid pTiAg162\",\n    2649: \"Plasmid pTiAg57\",\n    2650: \"Plasmid pTiB6S3\",\n    2651: \"Plasmid pTiC58\",\n    2652: \"Plasmid pTiS4\",\n    2653: \"Plasmid pUB110cop1\",\n    2655: \"Plasmid pUB110\",\n    2656: \"Plasmid pUH1\",\n    2657: \"Plasmid pUR400\",\n    2658: \"Plasmid pVA380-1\",\n    2659: \"Plasmid pVI150\",\n    2660: \"Plasmid pWM5\",\n    2661: \"Plasmid pWR100\",\n    2662: \"Plasmid pWR60\",\n    2663: \"Plasmid pWW0\",\n    2664: \"Plasmid pWW53\",\n    2665: \"Plasmid pYV03\",\n    2666: \"Plasmid pYVe439-80\",\n    2670: \"Plasmid RP1\",\n    2671: \"integrons\",\n    2673: \"insertion sequences\",\n    2678: \"Insertion sequence IS2\",\n    2681: \"Insertion sequence IS407\",\n    2684: \"Insertion sequence IS4\",\n    2693: \"Incompatibility symbiont of Nasonia vitripennis\",\n    2694: \"Incompatibility symbiont of Nasonia longicornis\",\n    2695: \"Incompatibility symbiont of Nasonia giraulti\",\n    2697: \"Heliobacterium\",\n    2698: \"Heliobacterium chlorum\",\n    2699: \"Heliobacterium gestii\",\n    2701: \"Gardnerella\",\n    2702: \"Gardnerella vaginalis\",\n    2704: \"Thermoanaerobacter acetoethylicus\",\n    2706: \"Citrus\",\n    2707: \"Citrus greening disease-associated bacterium\",\n    2708: \"Citrus limon\",\n    2709: \"Citrus cavaleriei\",\n    2711: \"Citrus sinensis\",\n    2713: \"Aquifex\",\n    2714: \"Aquifex pyrophilus\",\n    2717: \"Cardiobacterium\",\n    2718: \"Cardiobacterium hominis\",\n    2722: \"unidentified proteobacterium\",\n    2723: \"Hirschia\",\n    2724: \"Hirschia baltica\",\n    2725: \"unidentified prokaryotic organism\",\n    2728: \"Candidatus Legionella jeonii\",\n    2733: \"Symbiobacterium\",\n    2734: \"Symbiobacterium thermophilum\",\n    2735: \"Verrucomicrobium\",\n    2736: \"Verrucomicrobium spinosum\",\n    2737: \"Vagococcus\",\n    2738: \"Vagococcus fluvialis\",\n    2739: \"Vagococcus salmoninarum\",\n    2740: \"Peptococcus\",\n    2741: \"Peptococcus niger\",\n    2742: \"Marinobacter\",\n    2743: \"Marinobacter hydrocarbonoclasticus\",\n    2745: \"Halomonas\",\n    2746: \"Halomonas elongata\",\n    2747: \"Carnobacterium\",\n    2748: \"Carnobacterium divergens\",\n    2749: \"Carnobacterium gallinarum\",\n    2750: \"Carnobacterium mobile\",\n    2751: \"Carnobacterium maltaromaticum\",\n    2752: \"Carnobacterium funditum\",\n    2753: \"Synergistes\",\n    2754: \"Synergistes jonesii\",\n    2755: \"Brochothrix\",\n    2756: \"Brochothrix thermosphacta\",\n    2757: \"Brochothrix campestris\",\n    2759: \"Eukaryota\",\n    2761: \"Cyanophora\",\n    2762: \"Cyanophora paradoxa\",\n    2763: \"Rhodophyta\",\n    2764: \"Aglaothamnion\",\n    2765: \"Aglaothamnion neglectum\",\n    2766: \"Antithamnion\",\n    2767: \"Antithamnion sp.\",\n    2768: \"Chondrus\",\n    2769: \"Chondrus crispus\",\n    2770: \"Cyanidium\",\n    2771: \"Cyanidium caldarium\",\n    2772: \"Gastroclonium\",\n    2773: \"Gastroclonium coulteri\",\n    2774: \"Gracilaria\",\n    2777: \"Gracilaria gracilis\",\n    2779: \"Gracilaria tikvahiae\",\n    2781: \"Gracilariopsis\",\n    2782: \"Gracilariopsis lemaneiformis\",\n    2783: \"Gracilariopsis sp.\",\n    2784: \"Porphyra\",\n    2785: \"Pyropia tenera\",\n    2786: \"Porphyra umbilicalis\",\n    2787: \"Porphyra purpurea\",\n    2788: \"Pyropia yezoensis\",\n    2790: \"Porphyra sp.\",\n    2791: \"Porphyridium\",\n    2792: \"Porphyridium aerugineum\",\n    2794: \"Rhodymenia\",\n    2797: \"Bangiophyceae\",\n    2798: \"Porphyridiales\",\n    2799: \"Porphyridiaceae\",\n    2800: \"Rhodella\",\n    2801: \"Rhodella violacea\",\n    2802: \"Ceramiales\",\n    2803: \"Rhodomelaceae\",\n    2804: \"Polysiphonia\",\n    2805: \"Polysiphonia boldii\",\n    2806: \"Florideophyceae\",\n    2807: \"Nemaliales\",\n    2808: \"Gelidiaceae\",\n    2809: \"Batrachospermum\",\n    2810: \"Batrachospermum ectocarpum\",\n    2811: \"Gelidium\",\n    2812: \"Gelidium amansii\",\n    2814: \"Endocladiaceae\",\n    2815: \"Carpopeltis\",\n    2816: \"Grateloupia crispata\",\n    2819: \"Palmariales\",\n    2820: \"Palmariaceae\",\n    2821: \"Palmaria\",\n    2822: \"Palmaria palmata\",\n    2823: \"Gloiopeltis\",\n    2824: \"Gloiopeltis complanata\",\n    2825: \"Chrysophyceae\",\n    2828: \"Heterosigma\",\n    2829: \"Heterosigma akashiwo\",\n    2830: \"Haptophyta\",\n    2831: \"Pavlova\",\n    2832: \"Pavlova lutheri\",\n    2833: \"Xanthophyceae\",\n    2834: \"Bumilleriopsis\",\n    2835: \"Bumilleriopsis filiformis\",\n    2836: \"Bacillariophyta\",\n    2838: \"Odontella\",\n    2842: \"Skeletonema\",\n    2843: \"Skeletonema costatum\",\n    2849: \"Phaeodactylum\",\n    2850: \"Phaeodactylum tricornutum\",\n    2852: \"Cylindrotheca\",\n    2853: \"Cylindrotheca fusiformis\",\n    2854: \"Cylindrotheca sp.\",\n    2855: \"Cylindrotheca sp. (STRAIN N1)\",\n    2856: \"Cylindrotheca closterium\",\n    2857: \"Nitzschia\",\n    2858: \"Nitzschia alba\",\n    2862: \"Diatoma\",\n    2864: \"Dinophyceae\",\n    2865: \"Crypthecodinium\",\n    2866: \"Crypthecodinium cohnii\",\n    2867: \"Peridinium\",\n    2868: \"Peridinium bipes\",\n    2869: \"Peridinium foliaceum\",\n    2870: \"Phaeophyceae\",\n    2871: \"Costaria\",\n    2872: \"Costaria costata\",\n    2873: \"Dictyotales\",\n    2874: \"Dictyotaceae\",\n    2875: \"Dictyota\",\n    2876: \"Dictyota dichotoma\",\n    2877: \"Ectocarpales\",\n    2878: \"Ectocarpaceae\",\n    2879: \"Ectocarpus\",\n    2880: \"Ectocarpus siliculosus\",\n    2881: \"Ectocarpus variabilis\",\n    2882: \"Pylaiella\",\n    2885: \"Pylaiella littoralis\",\n    2886: \"Laminariales\",\n    2887: \"Alariaceae\",\n    2888: \"Alaria\",\n    2889: \"Alaria esculenta\",\n    2891: \"Scytosiphonaceae\",\n    2892: \"Petalonia\",\n    2893: \"Petalonia fascia\",\n    2896: \"Cryptomonadaceae\",\n    2897: \"Chilomonas\",\n    2898: \"Cryptomonas paramecium\",\n    2902: \"Emiliania\",\n    2903: \"Emiliania huxleyi\",\n    2905: \"Ochrosphaera\",\n    2907: \"Ochrosphaera sp. 181\",\n    2910: \"Peridiniales\",\n    2912: \"Gonyaulax\",\n    2915: \"Ceratium\",\n    2916: \"Tripos fusus\",\n    2918: \"Heterocapsa\",\n    2919: \"Heterocapsa illdefina\",\n    2920: \"Heterocapsa niei\",\n    2922: \"Thoracosphaera\",\n    2923: \"Thoracosphaera heimii\",\n    2924: \"Alexandrium\",\n    2925: \"Alexandrium catenella\",\n    2926: \"Alexandrium tamarense\",\n    2928: \"Alexandrium cohorticula\",\n    2929: \"Alexandrium concavum\",\n    2932: \"Alexandrium fundyense\",\n    2935: \"Alexandrium insuetum\",\n    2936: \"Alexandrium kutnerae\",\n    2937: \"Alexandrium leei\",\n    2938: \"Alexandrium lusitanicum\",\n    2939: \"Alexandrium tropicale\",\n    2940: \"Cachonina\",\n    2942: \"Prorocentrales\",\n    2943: \"Prorocentraceae\",\n    2944: \"Prorocentrum\",\n    2945: \"Prorocentrum micans\",\n    2946: \"Prorocentrum mariae-labouriae\",\n    2949: \"Symbiodinium\",\n    2950: \"Symbiodinium sp.\",\n    2951: \"Symbiodinium microadriaticum\",\n    2952: \"Symbiodinium pilosum\",\n    2953: \"Gymnodiniales\",\n    2955: \"Gymnodinium\",\n    2957: \"Protodinium simplex\",\n    2958: \"Gymnodinium varians\",\n    2959: \"Gymnodinium sp.\",\n    2960: \"Amphidinium\",\n    2961: \"Amphidinium carterae\",\n    2962: \"Woloszynskia\",\n    2964: \"Noctilucales\",\n    2965: \"Noctiluca\",\n    2966: \"Noctiluca scintillans\",\n    2968: \"Oxyrrhis\",\n    2969: \"Oxyrrhis marina\",\n    2970: \"Pyrocystales\",\n    2971: \"Pyrocystis\",\n    2972: \"Pyrocystis lunula\",\n    2974: \"Vaucheriales\",\n    2975: \"Vaucheriaceae\",\n    2976: \"Vaucheria\",\n    2977: \"Vaucheria bursata\",\n    2978: \"Tribonematales\",\n    2979: \"Tribonemataceae\",\n    2980: \"Tribonema\",\n    2981: \"Tribonema aequale\",\n    2985: \"Ochromonas\",\n    2986: \"Ochromonas danica\",\n    2988: \"Mallomonas\",\n    2989: \"Mallomonas papillosa\",\n    2990: \"Mallomonas striata\",\n    2991: \"Synura\",\n    2992: \"Synura spinosa\",\n    2995: \"Hydrurus\",\n    2996: \"Hydrurus foetidus\",\n    2997: \"Chromulina\",\n    2998: \"Chromulina chionophila\",\n    2999: \"Hibberdia\",\n    3000: \"Hibberdia magna\",\n    3002: \"Bacillaria\",\n    3003: \"Bacillaria paxillifer\",\n    3004: \"Rhizosolenia\",\n    3005: \"Rhizosolenia setigera\",\n    3006: \"Stephanopyxis\",\n    3009: \"Fucales\",\n    3010: \"Fucaceae\",\n    3011: \"Fucus\",\n    3012: \"Fucus distichus\",\n    3013: \"Fucus gardneri\",\n    3014: \"Sargassaceae\",\n    3015: \"Sargassum\",\n    3016: \"Sargassum fulvellum\",\n    3017: \"Acinetospora\",\n    3018: \"Acinetospora crinita\",\n    3021: \"Akkesiphycus\",\n    3022: \"Akkesiphycus lubricum\",\n    3024: \"Chordaceae\",\n    3025: \"Chordaria\",\n    3026: \"Chordaria flagelliformis\",\n    3027: \"Cryptophyta\",\n    3028: \"Chroomonas\",\n    3029: \"Chroomonas sp.\",\n    3030: \"Cryptomonas\",\n    3031: \"Cryptomonas sp.\",\n    3032: \"Hanusia phi\",\n    3033: \"Pyrenomonas\",\n    3034: \"Pyrenomonas salina\",\n    3035: \"Euglenida\",\n    3036: \"Astasia\",\n    3037: \"Euglena longa\",\n    3038: \"Euglena\",\n    3039: \"Euglena gracilis\",\n    3040: \"Euglena viridis\",\n    3041: \"Chlorophyta\",\n    3042: \"Chlamydomonadales\",\n    3043: \"Dunaliellaceae\",\n    3044: \"Dunaliella\",\n    3046: \"Dunaliella salina\",\n    3047: \"Dunaliella tertiolecta\",\n    3048: \"Dunaliella parva\",\n    3049: \"Polytomella\",\n    3050: \"Polytomella agilis\",\n    3051: \"Chlamydomonadaceae\",\n    3052: \"Chlamydomonas\",\n    3054: \"Chlamydomonas moewusii\",\n    3055: \"Chlamydomonas reinhardtii\",\n    3056: \"Chlamydomonas sp. TK-1983\",\n    3057: \"Chlamydomonas sp. WXM\",\n    3059: \"Chlamydomonas gelatinosa\",\n    3061: \"Chlamydomonas pitschmannii\",\n    3062: \"Spondylomoraceae\",\n    3063: \"Pyrobotrys\",\n    3064: \"Pyrobotrys stellata\",\n    3065: \"Volvocaceae\",\n    3066: \"Volvox\",\n    3067: \"Volvox carteri\",\n    3068: \"Volvox carteri f. nagariensis\",\n    3070: \"Oocystaceae\",\n    3071: \"Chlorella\",\n    3072: \"Pseudochlorella pringsheimii\",\n    3073: \"[Chlorella] fusca\",\n    3074: \"Parachlorella kessleri\",\n    3075: \"Auxenochlorella protothecoides\",\n    3076: \"Chlorella sorokiniana\",\n    3077: \"Chlorella vulgaris\",\n    3078: \"Auxenochlorella pyrenoidosa\",\n    3079: \"Chlorella sp.\",\n    3080: \"Lobosphaeropsis lobophora\",\n    3081: \"Neodesmus pupukensis\",\n    3082: \"Chloroidium saccharophilum\",\n    3083: \"Edaphochlorella mirabilis\",\n    3084: \"green alga KS3/2\",\n    3086: \"Scenedesmaceae\",\n    3087: \"Scenedesmus\",\n    3088: \"Tetradesmus obliquus\",\n    3089: \"Scenedesmus quadricauda\",\n    3090: \"Chlorococcaceae\",\n    3091: \"Characium\",\n    3092: \"Characiopodium hindakii\",\n    3093: \"Characium perforatum\",\n    3094: \"Characium saccatum\",\n    3095: \"Chlamydopodium vacuolatum\",\n    3097: \"Ettlia minuta\",\n    3098: \"Neochloris\",\n    3099: \"Neochloris aquatica\",\n    3100: \"Neochloris vigensis\",\n    3101: \"Parietochloris\",\n    3102: \"Ettlia pseudoalveolaris\",\n    3103: \"Hydrodictyaceae\",\n    3104: \"Pediastrum\",\n    3105: \"Pediastrum duplex\",\n    3106: \"Hydrodictyon\",\n    3107: \"Hydrodictyon reticulatum\",\n    3108: \"Ankistrodesmus\",\n    3109: \"Ankistrodesmus stipitatus\",\n    3110: \"Prototheca\",\n    3111: \"Prototheca wickerhamii\",\n    3112: \"Prototheca zopfii\",\n    3113: \"Ulvales\",\n    3114: \"Ulvaceae\",\n    3116: \"Ulva intestinalis\",\n    3117: \"Ulva prolifera\",\n    3118: \"Ulva\",\n    3119: \"Ulva arasakii\",\n    3120: \"Ulva pertusa\",\n    3122: \"Coleochaetaceae\",\n    3123: \"Coleochaete\",\n    3124: \"Coleochaete orbicularis\",\n    3125: \"Coleochaete scutata\",\n    3127: \"Bryopsidaceae\",\n    3128: \"Bryopsis\",\n    3129: \"Bryopsis maxima\",\n    3130: \"Bryopsis plumosa\",\n    3131: \"Codiaceae\",\n    3132: \"Codium\",\n    3133: \"Codium fragile\",\n    3134: \"Dasycladales\",\n    3135: \"Dasycladaceae\",\n    3136: \"Acetabularia\",\n    3139: \"Batophora\",\n    3140: \"Batophora oerstedii\",\n    3142: \"Chlorokybaceae\",\n    3143: \"Chlorokybus\",\n    3144: \"Chlorokybus atmophyticus\",\n    3146: \"Characeae\",\n    3148: \"Nitella\",\n    3149: \"Nitella sp.\",\n    3150: \"Nitella flexilis\",\n    3151: \"Nitella axillaris\",\n    3155: \"Asteromonas\",\n    3156: \"Asteromonas gracilis\",\n    3158: \"Pedinomonas\",\n    3159: \"Pedinomonas minor\",\n    3160: \"Platymonas\",\n    3161: \"Tetraselmis subcordiformis\",\n    3162: \"Prasinocladus\",\n    3163: \"Prasinocladus sp. UTEX732\",\n    3164: \"Tetraselmis\",\n    3165: \"Tetraselmis striata\",\n    3166: \"Chlorophyceae\",\n    3168: \"Chlorella-like algae\",\n    3170: \"Friedmannia\",\n    3171: \"Myrmecia israeliensis\",\n    3172: \"Klebsormidiales\",\n    3173: \"Klebsormidiaceae\",\n    3174: \"Klebsormidium\",\n    3175: \"Klebsormidium flaccidum\",\n    3176: \"Zygnematales\",\n    3178: \"Zygnemataceae\",\n    3179: \"Spirogyra\",\n    3180: \"Spirogyra maxima\",\n    3181: \"Spirogyra sp.\",\n    3182: \"Spirogyra grevilleana\",\n    3183: \"Cladophorales\",\n    3185: \"Chaetomorpha\",\n    3186: \"Chaetomorpha moniligera\",\n    3187: \"Nannochloris\",\n    3188: \"Picochlorum eukaryotum sensu Mainz 1\",\n    3189: \"Scherffelia\",\n    3190: \"Scherffelia dubia\",\n    3191: \"Spermatozopsis\",\n    3192: \"Spermatozopsis similis\",\n    3193: \"Embryophyta\",\n    3195: \"Marchantiophyta\",\n    3196: \"Marchantia\",\n    3197: \"Marchantia polymorpha\",\n    3199: \"Jungermanniales\",\n    3200: \"Jungermanniineae\",\n    3201: \"Jungermanniaceae\",\n    3202: \"Jungermannia\",\n    3204: \"Lophocoleineae\",\n    3206: \"Lophocolea\",\n    3207: \"Lophocolea heterophylla\",\n    3208: \"Bryophyta\",\n    3210: \"Polytrichales\",\n    3211: \"Polytrichaceae\",\n    3212: \"Polytrichum\",\n    3213: \"Polytrichum commune\",\n    3214: \"Bryopsida\",\n    3215: \"Funariales\",\n    3216: \"Funariaceae\",\n    3217: \"Physcomitrella\",\n    3218: \"Physcomitrella patens\",\n    3219: \"Dicranales\",\n    3220: \"Dicranaceae\",\n    3221: \"Dicranum\",\n    3222: \"Dicranum scoparium\",\n    3223: \"Ditrichaceae\",\n    3224: \"Ceratodon\",\n    3225: \"Ceratodon purpureus\",\n    3226: \"Bryales\",\n    3227: \"Mniaceae\",\n    3228: \"Mnium\",\n    3229: \"Mnium rugicum\",\n    3230: \"Plagiomnium\",\n    3231: \"Plagiomnium trichomanes\",\n    3233: \"Anthoceros\",\n    3234: \"Anthoceros punctatus\",\n    3236: \"Psilotopsida\",\n    3237: \"Psilotales\",\n    3238: \"Psilotaceae\",\n    3239: \"Psilotum\",\n    3240: \"Psilotum nudum\",\n    3244: \"Selaginellales\",\n    3245: \"Selaginellaceae\",\n    3246: \"Selaginella\",\n    3247: \"Selaginella martensii\",\n    3249: \"Lycopodiales\",\n    3250: \"Lycopodiaceae\",\n    3251: \"Lycopodium\",\n    3252: \"Lycopodium clavatum\",\n    3255: \"Equisetales\",\n    3256: \"Equisetaceae\",\n    3257: \"Equisetum\",\n    3258: \"Equisetum arvense\",\n    3259: \"Equisetum giganteum\",\n    3260: \"Equisetum telmateia\",\n    3261: \"Equisetum scirpoides\",\n    3262: \"Equisetum hyemale\",\n    3264: \"Marattiales\",\n    3265: \"Marattiaceae\",\n    3266: \"Angiopteris\",\n    3267: \"Angiopteris lygodiifolia\",\n    3268: \"Polypodiales\",\n    3269: \"Dicksoniaceae\",\n    3270: \"Dicksonia\",\n    3271: \"Dicksonia antarctica\",\n    3272: \"Gleicheniaceae\",\n    3273: \"Gleichenia\",\n    3274: \"Gleichenia japonica\",\n    3275: \"Polypodiaceae\",\n    3276: \"Matteuccia\",\n    3277: \"Matteuccia struthiopteris\",\n    3278: \"Polystichum\",\n    3279: \"Polystichum munitum\",\n    3280: \"Onoclea\",\n    3281: \"Onoclea sensibilis\",\n    3282: \"Osmundaceae\",\n    3283: \"Osmunda\",\n    3284: \"Osmundastrum cinnamomeum\",\n    3285: \"Osmunda regalis\",\n    3287: \"Dryopteris\",\n    3288: \"Dryopteris acuminata\",\n    3289: \"Dryopteris filix-mas\",\n    3296: \"Cycadopsida\",\n    3297: \"Cycadales\",\n    3298: \"Zamiaceae\",\n    3299: \"Encephalartos\",\n    3300: \"Encephalartos altensteinii\",\n    3301: \"Encephalartos ferox\",\n    3302: \"Encephalartos arenarius\",\n    3303: \"Zamia\",\n    3304: \"Zamia pumila\",\n    3305: \"Zamia integrifolia\",\n    3306: \"Zamia pygmaea\",\n    3307: \"Zamia inermis\",\n    3308: \"Ginkgoales\",\n    3309: \"Ginkgoaceae\",\n    3310: \"Ginkgo\",\n    3311: \"Ginkgo biloba\",\n    3313: \"Pinidae\",\n    3315: \"Thuja\",\n    3316: \"Thuja plicata\",\n    3317: \"Thuja occidentalis\",\n    3318: \"Pinaceae\",\n    3319: \"Abies\",\n    3320: \"Abies magnifica\",\n    3321: \"Cedrus\",\n    3322: \"Cedrus deodara\",\n    3323: \"Keteleeria\",\n    3324: \"Keteleeria davidiana\",\n    3325: \"Larix\",\n    3326: \"Larix laricina\",\n    3327: \"Larix occidentalis\",\n    3328: \"Picea\",\n    3329: \"Picea abies\",\n    3330: \"Picea glauca\",\n    3331: \"Picea pungens\",\n    3332: \"Picea sitchensis\",\n    3333: \"Picea rubens\",\n    3334: \"Picea engelmannii\",\n    3335: \"Picea mariana\",\n    3336: \"Picea omorika\",\n    3337: \"Pinus\",\n    3338: \"Pinus balfouriana\",\n    3339: \"Pinus contorta\",\n    3340: \"Pinus edulis\",\n    3341: \"Pinus wallichiana\",\n    3342: \"Pinus krempfii\",\n    3343: \"Pinus lambertiana\",\n    3344: \"Pinus longaeva\",\n    3345: \"Pinus monticola\",\n    3346: \"Pinus pinea\",\n    3347: \"Pinus radiata\",\n    3348: \"Pinus strobus\",\n    3349: \"Pinus sylvestris\",\n    3350: \"Pinus thunbergii\",\n    3351: \"Pinus coulteri\",\n    3352: \"Pinus taeda\",\n    3353: \"Pinus banksiana\",\n    3354: \"Pseudolarix\",\n    3355: \"Pseudolarix amabilis\",\n    3356: \"Pseudotsuga\",\n    3357: \"Pseudotsuga menziesii\",\n    3358: \"Tsuga\",\n    3359: \"Tsuga heterophylla\",\n    3362: \"Podocarpaceae\",\n    3363: \"Podocarpus\",\n    3366: \"Podocarpus henkelii\",\n    3367: \"Cupressaceae\",\n    3368: \"Cryptomeria\",\n    3369: \"Cryptomeria japonica\",\n    3370: \"Metasequoia\",\n    3371: \"Metasequoia glyptostroboides\",\n    3372: \"Gnetopsida\",\n    3374: \"Welwitschiales\",\n    3375: \"Welwitschiaceae\",\n    3376: \"Welwitschia\",\n    3377: \"Welwitschia mirabilis\",\n    3378: \"Gnetales\",\n    3379: \"Gnetaceae\",\n    3380: \"Gnetum\",\n    3381: \"Gnetum montanum\",\n    3382: \"Gnetum gnemon\",\n    3383: \"Gnetum ula\",\n    3385: \"Ephedrales\",\n    3386: \"Ephedraceae\",\n    3387: \"Ephedra\",\n    3388: \"Ephedra kokanica\",\n    3389: \"Ephedra distachya\",\n    3390: \"Ephedra tweediana\",\n    3391: \"Ephedra altissima\",\n    3394: \"Cycadaceae\",\n    3395: \"Cycas\",\n    3396: \"Cycas revoluta\",\n    3397: \"Cycas circinalis\",\n    3398: \"Magnoliopsida\",\n    3400: \"Magnoliales\",\n    3401: \"Magnoliaceae\",\n    3402: \"Magnolia\",\n    3403: \"Magnolia liliiflora\",\n    3404: \"Magnolia acuminata\",\n    3406: \"Magnolia grandiflora\",\n    3407: \"Magnolia x soulangeana\",\n    3408: \"Magnolia hypoleuca\",\n    3409: \"Magnolia latahensis\",\n    3410: \"Magnolia macrophylla\",\n    3411: \"Magnolia salicifolia\",\n    3412: \"Magnolia virginiana\",\n    3413: \"Liriodendron\",\n    3414: \"Liriodendron chinense\",\n    3415: \"Liriodendron tulipifera\",\n    3417: \"Winteraceae\",\n    3418: \"Drimys\",\n    3419: \"Drimys winteri\",\n    3420: \"Tasmannia lanceolata\",\n    3421: \"Tasmannia\",\n    3422: \"Tasmannia insipida\",\n    3423: \"Tasmannia purpurascens\",\n    3424: \"Canellaceae\",\n    3425: \"Canella\",\n    3426: \"Canella winterana\",\n    3427: \"Calycanthaceae\",\n    3428: \"Calycanthus\",\n    3429: \"Calycanthus floridus\",\n    3430: \"Calycanthus occidentalis\",\n    3431: \"Calycanthus chinensis\",\n    3432: \"Laurales\",\n    3433: \"Lauraceae\",\n    3434: \"Persea\",\n    3435: \"Persea americana\",\n    3436: \"Persea borbonia\",\n    3437: \"Umbellularia\",\n    3438: \"Umbellularia californica\",\n    3440: \"Ranunculaceae\",\n    3441: \"Coptis\",\n    3442: \"Coptis japonica\",\n    3443: \"Nigella\",\n    3444: \"Nigella damascena\",\n    3445: \"Ranunculus\",\n    3447: \"Ranunculus acris\",\n    3448: \"Caltha\",\n    3449: \"Caltha palustris\",\n    3450: \"Aquilegia\",\n    3451: \"Aquilegia vulgaris\",\n    3452: \"Clematis\",\n    3453: \"Clematis rehderiana\",\n    3454: \"Clematis ligusticifolia\",\n    3455: \"Menispermaceae\",\n    3456: \"Dioscoreophyllum\",\n    3457: \"Dioscoreophyllum cumminsii\",\n    3458: \"Coriariaceae\",\n    3459: \"Coriaria\",\n    3460: \"Coriaria myrtifolia\",\n    3462: \"Fumarioideae\",\n    3463: \"Corydalis\",\n    3464: \"Capnoides sempervirens\",\n    3465: \"Papaveraceae\",\n    3466: \"Eschscholzia\",\n    3467: \"Eschscholzia californica\",\n    3468: \"Papaver\",\n    3469: \"Papaver somniferum\",\n    3471: \"Sanguinaria\",\n    3472: \"Sanguinaria canadensis\",\n    3474: \"Ulmaceae\",\n    3475: \"Parasponia\",\n    3476: \"Parasponia andersonii\",\n    3477: \"Parasponia rigida\",\n    3478: \"Rhizobium sp. ANU289\",\n    3479: \"Trema\",\n    3480: \"Trema tomentosum\",\n    3481: \"Cannabaceae\",\n    3482: \"Cannabis\",\n    3483: \"Cannabis sativa\",\n    3484: \"Humulus\",\n    3485: \"Humulus japonicus\",\n    3486: \"Humulus lupulus\",\n    3487: \"Moraceae\",\n    3488: \"Artocarpus\",\n    3489: \"Artocarpus heterophyllus\",\n    3490: \"Artocarpus integer\",\n    3492: \"Artocarpus tonkinensis\",\n    3493: \"Ficus\",\n    3494: \"Ficus carica\",\n    3495: \"Maclura\",\n    3496: \"Maclura pomifera\",\n    3497: \"Morus\",\n    3498: \"Morus alba\",\n    3499: \"Urticaceae\",\n    3500: \"Urtica\",\n    3501: \"Urtica dioica\",\n    3502: \"Fagales\",\n    3503: \"Fagaceae\",\n    3504: \"Betula\",\n    3505: \"Betula pendula\",\n    3507: \"Betula papyrifera\",\n    3508: \"Betula nigra\",\n    3509: \"Myrica\",\n    3510: \"Morella cerifera\",\n    3511: \"Quercus\",\n    3512: \"Quercus rubra\",\n    3513: \"Quercus alba\",\n    3514: \"Betulaceae\",\n    3515: \"Alnus\",\n    3516: \"Alnus incana\",\n    3517: \"Alnus glutinosa\",\n    3518: \"Alnus alnobetula subsp. crispa\",\n    3520: \"Casuarinaceae\",\n    3521: \"Casuarina\",\n    3522: \"Casuarina glauca\",\n    3523: \"Casuarina equisetifolia\",\n    3524: \"Caryophyllales\",\n    3525: \"Phytolaccaceae\",\n    3526: \"Phytolacca\",\n    3527: \"Phytolacca americana\",\n    3528: \"Phytolacca acinosa\",\n    3529: \"Gisekia\",\n    3530: \"Gisekia pharnaceoides\",\n    3531: \"Rivineae\",\n    3532: \"Rivina\",\n    3533: \"Rivina humilis\",\n    3534: \"Stegnosperma\",\n    3535: \"Stegnosperma halimifolium\",\n    3536: \"Nyctaginaceae\",\n    3537: \"Mirabilis\",\n    3538: \"Mirabilis jalapa\",\n    3540: \"Bougainvillea\",\n    3541: \"Bougainvillea glabra\",\n    3542: \"Aizoaceae\",\n    3543: \"Mesembryanthemum\",\n    3544: \"Mesembryanthemum crystallinum\",\n    3545: \"Lithops\",\n    3546: \"Lithops sp.\",\n    3547: \"Trianthema\",\n    3548: \"Trianthema portulacastrum\",\n    3550: \"Atriplex\",\n    3551: \"Atriplex patula\",\n    3552: \"Atriplex rosea\",\n    3553: \"Atriplex nummularia\",\n    3554: \"Beta\",\n    3555: \"Beta vulgaris subsp. vulgaris\",\n    3557: \"Patellifolia patellaris\",\n    3558: \"Chenopodium\",\n    3559: \"Chenopodium album\",\n    3560: \"Oxybasis rubra\",\n    3561: \"Spinacia\",\n    3562: \"Spinacia oleracea\",\n    3563: \"Amaranthaceae\",\n    3564: \"Amaranthus\",\n    3565: \"Amaranthus hybridus\",\n    3567: \"Amaranthus caudatus\",\n    3568: \"Caryophyllaceae\",\n    3569: \"Dianthus\",\n    3570: \"Dianthus caryophyllus\",\n    3571: \"Saponaria\",\n    3572: \"Saponaria officinalis\",\n    3573: \"Silene\",\n    3575: \"Silene gallica\",\n    3577: \"Arenaria\",\n    3578: \"Arenaria drummondii\",\n    3579: \"Cerastium\",\n    3580: \"Cerastium glomeratum\",\n    3581: \"Portulacaceae\",\n    3582: \"Portulaca\",\n    3583: \"Portulaca grandiflora\",\n    3584: \"Didiereaceae\",\n    3585: \"Alluaudia\",\n    3586: \"Alluaudia procera\",\n    3587: \"Basellaceae\",\n    3588: \"Basella\",\n    3589: \"Basella alba\",\n    3590: \"Molluginaceae\",\n    3591: \"Mollugo\",\n    3592: \"Mollugo verticillata\",\n    3593: \"Cactaceae\",\n    3594: \"Schlumbergera\",\n    3595: \"Schlumbergera truncata\",\n    3596: \"Pereskia\",\n    3597: \"Pereskia aculeata\",\n    3599: \"Phaulothamnus\",\n    3600: \"Phaulothamnus spinescens\",\n    3602: \"Vitaceae\",\n    3603: \"Vitis\",\n    3604: \"Vitis sp.\",\n    3605: \"Vitis aestivalis\",\n    3606: \"Parthenocissus\",\n    3607: \"Parthenocissus quinquefolia\",\n    3608: \"Rhamnaceae\",\n    3609: \"Rhamnus\",\n    3610: \"Rhamnus cathartica\",\n    3612: \"Colletia\",\n    3613: \"Colletia armata\",\n    3615: \"Polygonaceae\",\n    3616: \"Fagopyrum\",\n    3617: \"Fagopyrum esculentum\",\n    3618: \"Rumex\",\n    3619: \"Rumex obtusifolius\",\n    3620: \"Rheum\",\n    3621: \"Rheum rhabarbarum\",\n    3623: \"Actinidiaceae\",\n    3624: \"Actinidia\",\n    3625: \"Actinidia chinensis\",\n    3627: \"Actinidia deliciosa\",\n    3629: \"Malvaceae\",\n    3630: \"Abutilon\",\n    3631: \"Abutilon theophrasti\",\n    3633: \"Gossypium\",\n    3634: \"Gossypium barbadense\",\n    3635: \"Gossypium hirsutum\",\n    3636: \"Gossypium robinsonii\",\n    3637: \"Thespesia\",\n    3638: \"Thespesia populnea\",\n    3640: \"Theobroma\",\n    3641: \"Theobroma cacao\",\n    3642: \"Lecythidaceae\",\n    3644: \"Bertholletia\",\n    3645: \"Bertholletia excelsa\",\n    3646: \"Malpighiales\",\n    3647: \"Caricaceae\",\n    3648: \"Carica\",\n    3649: \"Carica papaya\",\n    3650: \"Cucurbitaceae\",\n    3651: \"Bryonia\",\n    3652: \"Bryonia dioica\",\n    3653: \"Citrullus\",\n    3654: \"Citrullus lanatus\",\n    3655: \"Cucumis\",\n    3656: \"Cucumis melo\",\n    3657: \"Cucumis melo var. conomon\",\n    3658: \"Cucumis melo var. cantalupo\",\n    3659: \"Cucumis sativus\",\n    3660: \"Cucurbita\",\n    3661: \"Cucurbita maxima\",\n    3662: \"Cucurbita moschata\",\n    3663: \"Cucurbita pepo\",\n    3664: \"Cucurbita pepo subsp. pepo\",\n    3665: \"Cucurbita pepo var. melopepo\",\n    3667: \"Lagenaria\",\n    3668: \"Lagenaria siceraria\",\n    3669: \"Luffa\",\n    3670: \"Luffa aegyptiaca\",\n    3671: \"Momordica\",\n    3672: \"Momordica balsamina\",\n    3673: \"Momordica charantia\",\n    3674: \"Momordica cochinchinensis\",\n    3675: \"Momordica repens\",\n    3676: \"Trichosanthes\",\n    3677: \"Trichosanthes kirilowii\",\n    3678: \"Ecballium\",\n    3679: \"Ecballium elaterium\",\n    3680: \"Begoniaceae\",\n    3681: \"Begonia\",\n    3682: \"Begonia metallica x Begonia sanguinea\",\n    3683: \"Passifloraceae\",\n    3684: \"Passiflora\",\n    3685: \"Passiflora quadrangularis\",\n    3688: \"Salicaceae\",\n    3689: \"Populus\",\n    3690: \"Populus x canadensis\",\n    3691: \"Populus nigra\",\n    3693: \"Populus tremuloides\",\n    3694: \"Populus trichocarpa\",\n    3695: \"Populus trichocarpa x Populus deltoides\",\n    3696: \"Populus deltoides\",\n    3697: \"Populus sp.\",\n    3699: \"Brassicales\",\n    3700: \"Brassicaceae\",\n    3701: \"Arabidopsis\",\n    3702: \"Arabidopsis thaliana\",\n    3703: \"Armoracia\",\n    3704: \"Armoracia rusticana\",\n    3705: \"Brassica\",\n    3707: \"Brassica juncea\",\n    3708: \"Brassica napus\",\n    3709: \"Brassica napus subsp. rapifera\",\n    3710: \"Brassica nigra\",\n    3711: \"Brassica rapa\",\n    3712: \"Brassica oleracea\",\n    3713: \"Brassica oleracea var. viridis\",\n    3714: \"Brassica oleracea var. alboglabra\",\n    3715: \"Brassica oleracea var. botrytis\",\n    3716: \"Brassica oleracea var. capitata\",\n    3717: \"Brassica sp.\",\n    3718: \"Capsella\",\n    3719: \"Capsella bursa-pastoris\",\n    3720: \"Crambe\",\n    3721: \"Crambe hispanica subsp. abyssinica\",\n    3722: \"Crambe crambe\",\n    3723: \"Matthiola\",\n    3724: \"Matthiola incana\",\n    3725: \"Raphanus\",\n    3726: \"Raphanus sativus\",\n    3727: \"Sinapis\",\n    3728: \"Sinapis alba\",\n    3729: \"Sisymbrium\",\n    3730: \"Sisymbrium irio\",\n    3731: \"Diplotaxis\",\n    3732: \"Diplotaxis erucoides\",\n    3733: \"Moringaceae\",\n    3734: \"Moringa\",\n    3735: \"Moringa oleifera\",\n    3737: \"Sapotaceae\",\n    3740: \"Manilkara\",\n    3741: \"Manilkara zapota\",\n    3743: \"Synsepalum dulcificum\",\n    3744: \"Rosales\",\n    3745: \"Rosaceae\",\n    3746: \"Fragaria\",\n    3747: \"Fragaria x ananassa\",\n    3749: \"Malus\",\n    3750: \"Malus domestica\",\n    3751: \"Malus sp.\",\n    3752: \"Malus sylvestris\",\n    3754: \"Prunus\",\n    3755: \"Prunus dulcis\",\n    3756: \"Prunus dulcis var. amara\",\n    3758: \"Prunus domestica\",\n    3759: \"Prunus yedoensis\",\n    3760: \"Prunus persica\",\n    3761: \"Geum\",\n    3762: \"Geum chiloense\",\n    3763: \"Geum borisii\",\n    3764: \"Rosa\",\n    3765: \"Rosa x damascena\",\n    3766: \"Pyrus\",\n    3767: \"Pyrus pyrifolia\",\n    3769: \"Byblis\",\n    3770: \"Byblis liniflora\",\n    3771: \"Roridula\",\n    3772: \"Roridula gorgonias\",\n    3773: \"Cephalotaceae\",\n    3774: \"Cephalotus\",\n    3775: \"Cephalotus follicularis\",\n    3776: \"Cunoniaceae\",\n    3777: \"Ceratopetalum\",\n    3778: \"Ceratopetalum gummiferum\",\n    3779: \"Weinmannia\",\n    3780: \"Weinmannia silvicola\",\n    3781: \"Crassulaceae\",\n    3782: \"Crassula\",\n    3784: \"Sedum\",\n    3785: \"Sedum rubrotinctum\",\n    3786: \"Pachyphytum\",\n    3790: \"Eucryphia\",\n    3791: \"Eucryphia lucida\",\n    3792: \"Saxifragaceae\",\n    3794: \"Heuchera\",\n    3795: \"Heuchera micrantha\",\n    3796: \"Parnassia\",\n    3797: \"Parnassia fimbriata\",\n    3798: \"Saxifraga\",\n    3799: \"Micranthes integrifolia\",\n    3801: \"Ribes\",\n    3802: \"Ribes americanum\",\n    3803: \"Fabaceae\",\n    3804: \"Caesalpinioideae\",\n    3805: \"Bauhinia\",\n    3806: \"Bauhinia purpurea\",\n    3807: \"mimosoid clade\",\n    3808: \"Acacia\",\n    3809: \"Acacia confusa\",\n    3810: \"Adenanthera\",\n    3811: \"Adenanthera pavonina\",\n    3812: \"Albizia\",\n    3813: \"Albizia julibrissin\",\n    3814: \"Papilionoideae\",\n    3815: \"Abrus\",\n    3816: \"Abrus precatorius\",\n    3817: \"Arachis\",\n    3818: \"Arachis hypogaea\",\n    3820: \"Cajanus\",\n    3821: \"Cajanus cajan\",\n    3822: \"Canavalia\",\n    3823: \"Canavalia ensiformis\",\n    3824: \"Canavalia gladiata\",\n    3825: \"Canavalia rosea\",\n    3826: \"Cicer\",\n    3827: \"Cicer arietinum\",\n    3828: \"Crotalaria\",\n    3829: \"Crotalaria juncea\",\n    3830: \"Crotalaria pallida\",\n    3831: \"Cyamopsis\",\n    3832: \"Cyamopsis tetragonoloba\",\n    3833: \"Cytisus\",\n    3834: \"Cytisophyllum sessilifolium\",\n    3835: \"Cytisus scoparius\",\n    3836: \"Dioclea\",\n    3837: \"Dioclea grandiflora\",\n    3838: \"Dioclea lehmannii\",\n    3839: \"Dolichos\",\n    3840: \"Vigna unguiculata subsp. cylindrica\",\n    3841: \"Erythrina\",\n    3842: \"Erythrina caffra\",\n    3843: \"Erythrina corallodendron\",\n    3844: \"Erythrina latissima\",\n    3845: \"Erythrina variegata\",\n    3846: \"Glycine\",\n    3847: \"Glycine max\",\n    3848: \"Glycine soja\",\n    3849: \"Griffonia\",\n    3850: \"Griffonia simplicifolia\",\n    3851: \"Laburnum\",\n    3852: \"Laburnum alpinum\",\n    3853: \"Lathyrus\",\n    3854: \"Lathyrus aphaca\",\n    3855: \"Lathyrus clymenum\",\n    3856: \"Lathyrus cicera\",\n    3857: \"Lathyrus hirsutus\",\n    3858: \"Lathyrus ochrus\",\n    3859: \"Lathyrus odoratus\",\n    3860: \"Lathyrus sativus\",\n    3861: \"Lathyrus sphaericus\",\n    3862: \"Lathyrus tingitanus\",\n    3863: \"Lens\",\n    3864: \"Lens culinaris\",\n    3865: \"Leucaena\",\n    3866: \"Leucaena leucocephala\",\n    3867: \"Lotus\",\n    3868: \"Lotus tetragonolobus\",\n    3869: \"Lupinus\",\n    3870: \"Lupinus albus\",\n    3871: \"Lupinus angustifolius\",\n    3872: \"Lupinus arboreus\",\n    3873: \"Lupinus luteus\",\n    3874: \"Lupinus polyphyllus\",\n    3875: \"Macrotyloma\",\n    3876: \"Macrotyloma axillare\",\n    3877: \"Medicago\",\n    3878: \"Medicago falcata\",\n    3879: \"Medicago sativa\",\n    3880: \"Medicago truncatula\",\n    3881: \"Onobrychis\",\n    3882: \"Onobrychis viciifolia\",\n    3883: \"Phaseolus\",\n    3884: \"Phaseolus lunatus\",\n    3885: \"Phaseolus vulgaris\",\n    3886: \"Phaseolus coccineus\",\n    3887: \"Pisum\",\n    3888: \"Pisum sativum\",\n    3889: \"Psophocarpus\",\n    3890: \"Psophocarpus scandens\",\n    3891: \"Psophocarpus tetragonolobus\",\n    3892: \"Pueraria\",\n    3893: \"Pueraria montana var. lobata\",\n    3894: \"Sesbania\",\n    3895: \"Sesbania rostrata\",\n    3896: \"Sophora\",\n    3897: \"Styphnolobium japonicum\",\n    3898: \"Trifolium\",\n    3899: \"Trifolium repens\",\n    3900: \"Trifolium subterraneum\",\n    3901: \"Ulex\",\n    3902: \"Ulex europaeus\",\n    3904: \"Vicia\",\n    3905: \"Vicia cracca\",\n    3906: \"Vicia faba\",\n    3907: \"Vicia faba var. minor\",\n    3908: \"Vicia sativa\",\n    3909: \"Vicia sativa subsp. nigra\",\n    3910: \"Vicia hirsuta\",\n    3911: \"Vicia villosa\",\n    3912: \"Vicia narbonensis\",\n    3913: \"Vigna\",\n    3914: \"Vigna angularis\",\n    3915: \"Vigna mungo\",\n    3916: \"Vigna radiata var. radiata\",\n    3917: \"Vigna unguiculata\",\n    3918: \"Vigna aconitifolia\",\n    3920: \"Vigna unguiculata subsp. unguiculata\",\n    3921: \"Wisteria\",\n    3922: \"Wisteria floribunda\",\n    3925: \"Lonchocarpus\",\n    3926: \"Philenoptera violacea\",\n    3928: \"Lythraceae\",\n    3929: \"Cuphea\",\n    3930: \"Cuphea lanceolata\",\n    3931: \"Myrtaceae\",\n    3932: \"Eucalyptus\",\n    3933: \"Eucalyptus gunnii\",\n    3934: \"Onagraceae\",\n    3935: \"Clarkia\",\n    3936: \"Clarkia lewisii\",\n    3937: \"Clarkia unguiculata\",\n    3938: \"Clarkia xantiana\",\n    3939: \"Oenothera\",\n    3940: \"Oenothera argillicola\",\n    3941: \"Oenothera villaricae\",\n    3942: \"Oenothera biennis\",\n    3945: \"Oenothera organensis\",\n    3946: \"Oenothera picensis\",\n    3947: \"Oenothera picensis subsp. picensis\",\n    3948: \"Oenothera sp.\",\n    3949: \"Oenothera ammophila\",\n    3950: \"Oenothera berteroana\",\n    3951: \"Oenothera odorata\",\n    3953: \"Oenothera speciosa\",\n    3954: \"Combretaceae\",\n    3955: \"Quisqualis\",\n    3956: \"Combretum indicum\",\n    3958: \"Santalaceae\",\n    3959: \"Pyrularia\",\n    3960: \"Pyrularia pubera\",\n    3961: \"Buckleya\",\n    3962: \"Buckleya distichophylla\",\n    3963: \"Loranthaceae\",\n    3964: \"Dendrophthora\",\n    3965: \"Dendrophthora clavata\",\n    3966: \"Dendrophthora domingensis\",\n    3967: \"Phoradendron\",\n    3968: \"Phoradendron liga\",\n    3969: \"Phoradendron leucarpum subsp. tomentosum\",\n    3970: \"Phoradendron leucarpum\",\n    3971: \"Viscum\",\n    3972: \"Viscum album\",\n    3973: \"Olacaceae\",\n    3974: \"Schoepfia\",\n    3975: \"Schoepfia arenaria\",\n    3977: \"Euphorbiaceae\",\n    3978: \"Gelonium\",\n    3979: \"Suregada multiflora\",\n    3980: \"Hevea\",\n    3981: \"Hevea brasiliensis\",\n    3982: \"Manihot\",\n    3983: \"Manihot esculenta\",\n    3984: \"Mercurialis\",\n    3985: \"Mercurialis perennis\",\n    3986: \"Mercurialis annua\",\n    3987: \"Ricinus\",\n    3988: \"Ricinus communis\",\n    3990: \"Euphorbia\",\n    3991: \"Euphorbia characias\",\n    3992: \"Euphorbia dulcis\",\n    3993: \"Euphorbia esula\",\n    3994: \"Euphorbia polychroma\",\n    3995: \"Jatropha\",\n    3996: \"Jatropha multifida\",\n    3997: \"Simmondsiaceae\",\n    3998: \"Simmondsia\",\n    3999: \"Simmondsia chinensis\",\n    4000: \"Buxaceae\",\n    4001: \"Buxus\",\n    4002: \"Buxus sempervirens\",\n    4004: \"Linaceae\",\n    4005: \"Linum\",\n    4006: \"Linum usitatissimum\",\n    4007: \"Humiriaceae\",\n    4008: \"Humiria\",\n    4009: \"Humiria balsamifera\",\n    4011: \"Anacardiaceae\",\n    4012: \"Rhus\",\n    4013: \"Toxicodendron vernicifluum\",\n    4014: \"Burseraceae\",\n    4015: \"Bursera\",\n    4016: \"Bursera inaguensis\",\n    4018: \"Tropaeolaceae\",\n    4019: \"Tropaeolum\",\n    4020: \"Tropaeolum majus\",\n    4022: \"Acer\",\n    4023: \"Acer negundo\",\n    4024: \"Acer saccharum\",\n    4025: \"Acer platanoides\",\n    4026: \"Acer pseudoplatanus\",\n    4027: \"Geraniaceae\",\n    4028: \"Geranium\",\n    4029: \"Pelargonium grandiflorum\",\n    4030: \"Pelargonium\",\n    4031: \"Pelargonium x hortorum\",\n    4032: \"Pelargonium zonale\",\n    4033: \"Oxalidaceae\",\n    4034: \"Oxalis\",\n    4035: \"Oxalis dillenii\",\n    4036: \"Apiales\",\n    4037: \"Apiaceae\",\n    4038: \"Daucus\",\n    4039: \"Daucus carota\",\n    4040: \"Pastinaca\",\n    4041: \"Pastinaca sativa\",\n    4042: \"Petroselinum\",\n    4043: \"Petroselinum crispum\",\n    4044: \"Apium\",\n    4045: \"Apium graveolens\",\n    4046: \"Coriandrum\",\n    4047: \"Coriandrum sativum\",\n    4048: \"Hydrocotyle\",\n    4049: \"Hydrocotyle sibthorpioides\",\n    4050: \"Araliaceae\",\n    4051: \"Hedera\",\n    4052: \"Hedera helix\",\n    4053: \"Panax\",\n    4054: \"Panax ginseng\",\n    4055: \"Gentianales\",\n    4056: \"Apocynaceae\",\n    4057: \"Catharanthus\",\n    4058: \"Catharanthus roseus\",\n    4059: \"Rauvolfia\",\n    4060: \"Rauvolfia serpentina\",\n    4062: \"Rauvolfia mannii\",\n    4065: \"Calotropis\",\n    4066: \"Calotropis gigantea\",\n    4067: \"Gymnema\",\n    4068: \"Gymnema sylvestre\",\n    4069: \"Solanales\",\n    4070: \"Solanaceae\",\n    4071: \"Capsicum\",\n    4072: \"Capsicum annuum\",\n    4073: \"Capsicum frutescens\",\n    4074: \"Datura\",\n    4075: \"Datura inoxia\",\n    4076: \"Datura stramonium\",\n    4078: \"Hyoscyamus\",\n    4079: \"Hyoscyamus niger\",\n    4081: \"Solanum lycopersicum\",\n    4082: \"Solanum peruvianum\",\n    4083: \"Solanum chilense\",\n    4084: \"Solanum pimpinellifolium\",\n    4085: \"Nicotiana\",\n    4086: \"Nicotiana acuminata\",\n    4087: \"Nicotiana alata\",\n    4088: \"Nicotiana quadrivalvis var. bigelovii\",\n    4089: \"Nicotiana debneyi\",\n    4090: \"Nicotiana glauca\",\n    4091: \"Nicotiana otophora\",\n    4092: \"Nicotiana plumbaginifolia\",\n    4093: \"Nicotiana rustica\",\n    4094: \"Nicotiana sp.\",\n    4096: \"Nicotiana sylvestris\",\n    4097: \"Nicotiana tabacum\",\n    4098: \"Nicotiana tomentosiformis\",\n    4100: \"Nicotiana benthamiana\",\n    4101: \"Petunia\",\n    4102: \"Petunia x hybrida\",\n    4103: \"Petunia integrifolia\",\n    4104: \"Petunia sp.\",\n    4107: \"Solanum\",\n    4108: \"Solanum chacoense\",\n    4109: \"Solanum commersonii\",\n    4110: \"Solanum crispum\",\n    4111: \"Solanum melongena\",\n    4112: \"Solanum nigrum\",\n    4113: \"Solanum tuberosum\",\n    4114: \"Solanum aviculare\",\n    4115: \"Solanum palustre\",\n    4116: \"Solanum petrophilum\",\n    4118: \"Convolvulaceae\",\n    4119: \"Ipomoea\",\n    4120: \"Ipomoea batatas\",\n    4121: \"Ipomoea purpurea\",\n    4122: \"Convolvulus\",\n    4123: \"Convolvulus arvensis\",\n    4124: \"Convolvulus tricolor\",\n    4128: \"Cuscuta\",\n    4129: \"Cuscuta reflexa\",\n    4130: \"Hydrophyllaceae\",\n    4131: \"Eriodictyon\",\n    4132: \"Eriodictyon californicum\",\n    4133: \"Hydrophyllum\",\n    4134: \"Hydrophyllum virginianum\",\n    4136: \"Lamiaceae\",\n    4137: \"Leonurus\",\n    4138: \"Leonurus japonicus\",\n    4139: \"Scutellaria\",\n    4142: \"Plectranthus scutellarioides\",\n    4143: \"Lamiales\",\n    4144: \"Oleaceae\",\n    4145: \"Olea\",\n    4146: \"Olea europaea\",\n    4147: \"Jasminum\",\n    4148: \"Jasminum simplicifolium subsp. suavissimum\",\n    4149: \"Scrophulariaceae\",\n    4150: \"Antirrhinum\",\n    4151: \"Antirrhinum majus\",\n    4152: \"Craterostigma\",\n    4153: \"Craterostigma plantagineum\",\n    4154: \"Mimulus\",\n    4155: \"Erythranthe guttata\",\n    4156: \"Erythranthe laciniata\",\n    4157: \"Erythranthe arvensis\",\n    4158: \"Erythranthe nasuta\",\n    4159: \"Erythranthe nudata\",\n    4160: \"Erythranthe microphylla\",\n    4161: \"Erythranthe tilingii\",\n    4162: \"Erythranthe glaucescens\",\n    4163: \"Digitalis\",\n    4164: \"Digitalis purpurea\",\n    4165: \"Cymbalaria\",\n    4166: \"Cymbalaria muralis\",\n    4167: \"Lamourouxia\",\n    4168: \"Lamourouxia sp. UCB\",\n    4169: \"Striga\",\n    4170: \"Striga asiatica\",\n    4172: \"Agalinis auriculata\",\n    4173: \"Veronica\",\n    4174: \"Veronica pilosa\",\n    4176: \"Epifagus\",\n    4177: \"Epifagus virginiana\",\n    4178: \"Conopholis\",\n    4179: \"Conopholis americana\",\n    4180: \"Pedaliaceae\",\n    4181: \"Sesamum\",\n    4182: \"Sesamum indicum\",\n    4183: \"Harpagophytum\",\n    4184: \"Uncarina grandidieri\",\n    4185: \"Acanthaceae\",\n    4186: \"Aphelandra\",\n    4187: \"Aphelandra sinclairiana\",\n    4188: \"Barleria\",\n    4189: \"Barleria prionitis\",\n    4190: \"Justicia\",\n    4191: \"Justicia odora\",\n    4192: \"Nelsonia\",\n    4193: \"Nelsonia campestris\",\n    4194: \"Ruttya\",\n    4195: \"Ruttya fruticosa\",\n    4196: \"Lentibulariaceae\",\n    4197: \"Pinguicula\",\n    4198: \"Pinguicula caerulea\",\n    4199: \"Dipsacales\",\n    4200: \"Caprifoliaceae\",\n    4201: \"Sambucus\",\n    4202: \"Sambucus nigra\",\n    4203: \"Sambucus racemosa\",\n    4204: \"Viburnum\",\n    4205: \"Viburnum acerifolium\",\n    4206: \"Adoxaceae\",\n    4207: \"Adoxa\",\n    4208: \"Adoxa moschatellina\",\n    4209: \"Asterales\",\n    4210: \"Asteraceae\",\n    4211: \"Ambrosia\",\n    4212: \"Ambrosia artemisiifolia\",\n    4214: \"Ambrosia trifida\",\n    4215: \"Ambrosia artemisiifolia var. elatior\",\n    4216: \"Arctium\",\n    4217: \"Arctium lappa\",\n    4218: \"Arctium tomentosum\",\n    4219: \"Artemisia\",\n    4220: \"Artemisia vulgaris\",\n    4221: \"Carthamus\",\n    4222: \"Carthamus tinctorius\",\n    4223: \"Flaveria\",\n    4224: \"Flaveria bidentis\",\n    4225: \"Flaveria linearis\",\n    4226: \"Flaveria pringlei\",\n    4227: \"Flaveria trinervia\",\n    4228: \"Flaveria chlorifolia\",\n    4229: \"Guizotia\",\n    4230: \"Guizotia abyssinica\",\n    4231: \"Helianthus\",\n    4232: \"Helianthus annuus\",\n    4233: \"Helianthus tuberosus\",\n    4234: \"Helianthus petiolaris\",\n    4235: \"Lactuca\",\n    4236: \"Lactuca sativa\",\n    4237: \"Barnadesia\",\n    4238: \"Barnadesia caryophylla\",\n    4239: \"Ligularia\",\n    4240: \"Ligularia calthifolia\",\n    4242: \"Adenothamnus\",\n    4243: \"Adenothamnus validus\",\n    4244: \"Argyroxiphium\",\n    4245: \"Argyroxiphium caliginis\",\n    4246: \"Arnica\",\n    4247: \"Arnica mollis\",\n    4248: \"Dubautia\",\n    4249: \"Dubautia arborea\",\n    4250: \"Dubautia menziesii\",\n    4251: \"Hulsea\",\n    4252: \"Hulsea algida\",\n    4253: \"Madia\",\n    4254: \"Kyhosia bolanderi\",\n    4255: \"Madia elegans\",\n    4256: \"Harmonia stebbinsii\",\n    4257: \"Raillardella\",\n    4258: \"Raillardella pringlei\",\n    4260: \"Carlquistia muirii\",\n    4261: \"Anisocarpus scabridus\",\n    4262: \"Wilkesia\",\n    4263: \"Wilkesia gymnoxiphium\",\n    4264: \"Cynara\",\n    4265: \"Cynara cardunculus\",\n    4268: \"Malpighiaceae\",\n    4269: \"Byrsonima\",\n    4270: \"Byrsonima crassifolia\",\n    4272: \"Platytheca\",\n    4273: \"Platytheca verticillata\",\n    4274: \"Polygalaceae\",\n    4275: \"Polygala\",\n    4276: \"Polygala cruciata\",\n    4277: \"Securidaca\",\n    4278: \"Securidaca diversifolia\",\n    4280: \"Cornoideae\",\n    4281: \"Cornus\",\n    4282: \"Cornus canadensis\",\n    4283: \"Cornus florida\",\n    4284: \"Cornus racemosa\",\n    4285: \"Cornus mas\",\n    4286: \"Garryaceae\",\n    4287: \"Garrya\",\n    4288: \"Garrya elliptica\",\n    4289: \"Nyssaceae\",\n    4290: \"Nyssa\",\n    4292: \"Nyssa sylvatica\",\n    4294: \"Aquifoliaceae\",\n    4295: \"Ilex\",\n    4296: \"Ilex crenata\",\n    4297: \"Ilex vomitoria\",\n    4298: \"Ilex aquifolium\",\n    4299: \"Ilex ciliospinosa\",\n    4300: \"Ilex pernyi\",\n    4301: \"Nemopanthus\",\n    4302: \"Nemopanthus mucronatus\",\n    4303: \"Phelline\",\n    4304: \"Phelline comosa\",\n    4305: \"Celastraceae\",\n    4306: \"Euonymus\",\n    4307: \"Euonymus alatus\",\n    4309: \"Euonymus maackii\",\n    4310: \"Corynocarpaceae\",\n    4311: \"Corynocarpus\",\n    4312: \"Corynocarpus laevigatus\",\n    4313: \"Dichapetalaceae\",\n    4314: \"Dichapetalum\",\n    4315: \"Dichapetalum crassifolium\",\n    4317: \"Hippocratea\",\n    4318: \"Hippocratea richardiana\",\n    4319: \"Salacia\",\n    4320: \"Salacia pallescens\",\n    4321: \"Icacinaceae\",\n    4322: \"Icacina\",\n    4323: \"Icacina mannii\",\n    4324: \"Salvadoraceae\",\n    4325: \"Salvadora\",\n    4326: \"Salvadora persica\",\n    4328: \"Proteaceae\",\n    4329: \"Macadamia\",\n    4330: \"Macadamia ternifolia\",\n    4331: \"Protea\",\n    4332: \"Protea repens\",\n    4335: \"Primulaceae\",\n    4336: \"Anagallis\",\n    4337: \"Anagallis arvensis\",\n    4339: \"Cyrillaceae\",\n    4340: \"Cyrilla\",\n    4341: \"Cyrilla racemiflora\",\n    4343: \"Epacris\",\n    4344: \"Epacris sp.\",\n    4345: \"Ericaceae\",\n    4346: \"Rhododendron\",\n    4347: \"Rhododendron hippophaeoides\",\n    4348: \"Pterospora\",\n    4349: \"Pterospora andromedea\",\n    4350: \"Sarcodes\",\n    4351: \"Sarcodes sanguinea\",\n    4353: \"Sarraceniaceae\",\n    4354: \"Darlingtonia\",\n    4355: \"Darlingtonia californica\",\n    4356: \"Heliamphora\",\n    4357: \"Heliamphora nutans\",\n    4358: \"Sarracenia\",\n    4359: \"Sarracenia flava\",\n    4360: \"Droseraceae\",\n    4361: \"Dionaea\",\n    4362: \"Dionaea muscipula\",\n    4363: \"Drosera\",\n    4364: \"Drosera binata\",\n    4365: \"Drosera burmannii\",\n    4366: \"Drosera capensis\",\n    4367: \"Drosera dichrosepala\",\n    4368: \"Drosera filiformis\",\n    4369: \"Drosera peltata\",\n    4370: \"Drosera petiolaris\",\n    4371: \"Drosera regia\",\n    4372: \"Drosophyllum\",\n    4373: \"Drosophyllum lusitanicum\",\n    4374: \"Nepenthaceae\",\n    4375: \"Nepenthes\",\n    4376: \"Nepenthes alata\",\n    4377: \"Dillenia\",\n    4378: \"Dillenia indica\",\n    4381: \"Campanulaceae\",\n    4382: \"Lobelia\",\n    4383: \"Lobelia sp.\",\n    4386: \"Daphniphyllaceae\",\n    4387: \"Daphniphyllum\",\n    4388: \"Daphniphyllum sp.\",\n    4390: \"Eucommiaceae\",\n    4391: \"Eucommia\",\n    4392: \"Eucommia ulmoides\",\n    4395: \"Hamamelis\",\n    4396: \"Hamamelis mollis\",\n    4397: \"Hamamelis virginiana\",\n    4398: \"Liquidambar\",\n    4400: \"Liquidambar styraciflua\",\n    4401: \"Platanaceae\",\n    4402: \"Platanus\",\n    4403: \"Platanus occidentalis\",\n    4405: \"Trochodendraceae\",\n    4406: \"Trochodendron\",\n    4407: \"Trochodendron aralioides\",\n    4410: \"Nymphaeaceae\",\n    4411: \"Barclaya\",\n    4412: \"Barclaya longifolia\",\n    4413: \"Euryale\",\n    4414: \"Euryale ferox\",\n    4415: \"Nuphar\",\n    4416: \"Nuphar variegata\",\n    4418: \"Nymphaea\",\n    4419: \"Nymphaea odorata\",\n    4420: \"Victoria\",\n    4421: \"Victoria cruziana\",\n    4422: \"Cabombaceae\",\n    4423: \"Brasenia\",\n    4424: \"Brasenia schreberi\",\n    4425: \"Cabomba\",\n    4426: \"Cabomba caroliniana\",\n    4427: \"Ceratophyllum\",\n    4428: \"Ceratophyllum demersum\",\n    4429: \"Nelumbonaceae\",\n    4430: \"Nelumbo\",\n    4431: \"Nelumbo lutea\",\n    4432: \"Nelumbo nucifera\",\n    4434: \"Bataceae\",\n    4435: \"Batis\",\n    4436: \"Batis maritima\",\n    4437: \"Plumbaginaceae\",\n    4439: \"Plumbago\",\n    4441: \"Camellia\",\n    4442: \"Camellia sinensis\",\n    4443: \"Camellia japonica\",\n    4447: \"Liliopsida\",\n    4449: \"Alismataceae\",\n    4450: \"Sagittaria\",\n    4451: \"Sagittaria sagittifolia\",\n    4452: \"Sagittaria lancifolia\",\n    4454: \"Araceae\",\n    4455: \"Alocasia\",\n    4456: \"Alocasia macrorrhizos\",\n    4457: \"Arum\",\n    4458: \"Arum maculatum\",\n    4459: \"Colocasia\",\n    4460: \"Colocasia esculenta\",\n    4462: \"Sauromatum\",\n    4463: \"Sauromatum venosum\",\n    4464: \"Acorus\",\n    4465: \"Acorus calamus\",\n    4466: \"Gymnostachys\",\n    4467: \"Gymnostachys anceps\",\n    4469: \"Lemna\",\n    4470: \"Lemna gibba\",\n    4472: \"Lemna minor\",\n    4473: \"Spirodela\",\n    4476: \"Pistia\",\n    4477: \"Pistia stratiotes\",\n    4479: \"Poaceae\",\n    4480: \"Aegilops\",\n    4481: \"Aegilops crassa\",\n    4483: \"Aegilops bicornis\",\n    4485: \"Aegilops comosa\",\n    4486: \"Aegilops longissima\",\n    4487: \"Aegilops searsii\",\n    4491: \"Aegilops umbellulata\",\n    4492: \"Aegilops uniaristata\",\n    4493: \"Aegilops columnaris\",\n    4494: \"Aegilops markgrafii\",\n    4496: \"Avena\",\n    4497: \"Avena nuda\",\n    4498: \"Avena sativa\",\n    4499: \"Avena fatua\",\n    4500: \"Avena longiglumis\",\n    4501: \"Bromus\",\n    4502: \"Bromus secalinus\",\n    4504: \"Coix\",\n    4505: \"Coix lacryma-jobi\",\n    4508: \"Dactylis\",\n    4509: \"Dactylis glomerata\",\n    4510: \"Eleusine\",\n    4511: \"Eleusine coracana\",\n    4512: \"Hordeum\",\n    4513: \"Hordeum vulgare\",\n    4515: \"Hordeum bogdanii\",\n    4516: \"Hordeum bulbosum\",\n    4517: \"Hordeum jubatum\",\n    4519: \"Hordeum marinum\",\n    4520: \"Lolium\",\n    4521: \"Lolium multiflorum\",\n    4522: \"Lolium perenne\",\n    4523: \"Neurachne\",\n    4524: \"Neurachne munroi\",\n    4525: \"Neurachne tenuifolia\",\n    4527: \"Oryza\",\n    4528: \"Oryza longistaminata\",\n    4529: \"Oryza rufipogon\",\n    4530: \"Oryza sativa\",\n    4532: \"Oryza australiensis\",\n    4533: \"Oryza brachyantha\",\n    4534: \"Oryza latifolia\",\n    4535: \"Oryza officinalis\",\n    4536: \"Oryza sativa f. spontanea\",\n    4537: \"Oryza punctata\",\n    4538: \"Oryza glaberrima\",\n    4539: \"Panicum\",\n    4540: \"Panicum miliaceum\",\n    4541: \"Pennisetum\",\n    4543: \"Cenchrus americanus\",\n    4544: \"Poa\",\n    4545: \"Poa pratensis\",\n    4546: \"Saccharum\",\n    4547: \"Saccharum officinarum\",\n    4549: \"Secale\",\n    4550: \"Secale cereale\",\n    4551: \"Secale montanum\",\n    4552: \"Secale sylvestre\",\n    4553: \"Secale cereale subsp. vavilovii\",\n    4554: \"Setaria\",\n    4555: \"Setaria italica\",\n    4556: \"Setaria viridis\",\n    4557: \"Sorghum\",\n    4558: \"Sorghum bicolor\",\n    4560: \"Sorghum halepense\",\n    4562: \"Tripsacum\",\n    4563: \"Tripsacum dactyloides\",\n    4564: \"Triticum\",\n    4565: \"Triticum aestivum\",\n    4566: \"Triticum aestivum x Triticum timopheevi\",\n    4567: \"Triticum turgidum subsp. durum\",\n    4568: \"Triticum monococcum\",\n    4569: \"Triticum sp.\",\n    4570: \"Triticum timopheevii\",\n    4571: \"Triticum turgidum\",\n    4572: \"Triticum urartu\",\n    4573: \"Aegilops speltoides\",\n    4575: \"Zea\",\n    4576: \"Zea diploperennis\",\n    4577: \"Zea mays\",\n    4579: \"Zea mays subsp. mexicana\",\n    4580: \"Zea perennis\",\n    4581: \"Bambusa\",\n    4582: \"Bambusa multiplex\",\n    4583: \"Cenchrus\",\n    4584: \"Cenchrus setiger\",\n    4585: \"Psathyrostachys\",\n    4586: \"Psathyrostachys juncea\",\n    4587: \"Thinopyrum\",\n    4588: \"Thinopyrum elongatum\",\n    4589: \"Thinopyrum ponticum\",\n    4590: \"Arundinaria\",\n    4591: \"Arundinaria gigantea\",\n    4592: \"Agropyron\",\n    4593: \"Agropyron cristatum\",\n    4594: \"Amblyopyrum\",\n    4595: \"Amblyopyrum muticum\",\n    4596: \"Australopyrum\",\n    4597: \"Australopyrum retrofractum\",\n    4601: \"Thinopyrum bessarabicum\",\n    4603: \"Thinopyrum junceum\",\n    4604: \"Pseudoroegneria spicata\",\n    4605: \"Festuca\",\n    4606: \"Festuca arundinacea\",\n    4607: \"Festuca arizonica\",\n    4608: \"Festuca pratensis\",\n    4609: \"Cyperaceae\",\n    4610: \"Cyperus\",\n    4611: \"Cyperus alternifolius\",\n    4613: \"Bromeliaceae\",\n    4614: \"Ananas\",\n    4615: \"Ananas comosus\",\n    4616: \"Bromelia\",\n    4617: \"Bromelia plumieri\",\n    4618: \"Zingiberales\",\n    4619: \"Marantaceae\",\n    4620: \"Thaumatococcus\",\n    4621: \"Thaumatococcus daniellii\",\n    4622: \"Calathea\",\n    4623: \"Goeppertia loeseneri\",\n    4624: \"Marantochloa\",\n    4625: \"Marantochloa purpurea\",\n    4626: \"Cannaceae\",\n    4627: \"Canna\",\n    4628: \"Canna indica\",\n    4629: \"Canna tuerckheimii\",\n    4630: \"Costaceae\",\n    4631: \"Costus\",\n    4632: \"Costus barbatus\",\n    4633: \"Monocostus\",\n    4634: \"Monocostus uniflorus\",\n    4635: \"Tapeinochilos\",\n    4636: \"Tapeinochilos ananassae\",\n    4637: \"Musaceae\",\n    4638: \"Ensete\",\n    4639: \"Ensete ventricosum\",\n    4640: \"Musa\",\n    4641: \"Musa acuminata\",\n    4642: \"Zingiberaceae\",\n    4643: \"Globba\",\n    4644: \"Globba curtisii\",\n    4645: \"Hedychium\",\n    4646: \"Hedychium flavum\",\n    4647: \"Hedychium gardnerianum\",\n    4648: \"Riedelia\",\n    4649: \"Riedelia aff. wrayii SBG 83-203\",\n    4650: \"Zingiber\",\n    4651: \"Zingiber gramineum\",\n    4652: \"Heliconiaceae\",\n    4653: \"Heliconia\",\n    4654: \"Heliconia latispatha\",\n    4655: \"Heliconia paka\",\n    4656: \"Lowiaceae\",\n    4657: \"Orchidantha\",\n    4658: \"Orchidantha fimbriata\",\n    4660: \"Strelitziaceae\",\n    4661: \"Phenakospermum\",\n    4662: \"Phenakospermum guyannense\",\n    4663: \"Ravenala\",\n    4664: \"Ravenala madagascariensis\",\n    4665: \"Strelitzia\",\n    4666: \"Strelitzia nicolai\",\n    4667: \"Liliales\",\n    4668: \"Amaryllidaceae\",\n    4669: \"Galanthus\",\n    4670: \"Galanthus nivalis\",\n    4671: \"Dioscoreaceae\",\n    4672: \"Dioscorea\",\n    4673: \"Dioscorea japonica\",\n    4674: \"Hypoxidaceae\",\n    4675: \"Curculigo\",\n    4676: \"Molineria latifolia\",\n    4677: \"Liliaceae\",\n    4678: \"Allium\",\n    4679: \"Allium cepa\",\n    4681: \"Allium ampeloprasum\",\n    4682: \"Allium sativum\",\n    4683: \"Allium tuberosum\",\n    4684: \"Allium ursinum\",\n    4685: \"Asparagus\",\n    4686: \"Asparagus officinalis\",\n    4688: \"Lilium\",\n    4689: \"Lilium henryi\",\n    4690: \"Lilium longiflorum\",\n    4691: \"Lilium speciosum\",\n    4692: \"Lilium superbum\",\n    4693: \"Medeola\",\n    4694: \"Medeola virginiana\",\n    4695: \"Hippeastrum\",\n    4696: \"Hippeastrum sp.\",\n    4697: \"Narcissus\",\n    4698: \"Narcissus hybrid cultivar\",\n    4699: \"Uvularia\",\n    4700: \"Uvularia sessilifolia\",\n    4701: \"Scilla\",\n    4702: \"Scilla siberica\",\n    4703: \"Smilacaceae\",\n    4704: \"Geitonoplesium\",\n    4705: \"Geitonoplesium cymosum\",\n    4706: \"Lapageria\",\n    4707: \"Lapageria rosea\",\n    4710: \"Arecaceae\",\n    4711: \"Calamus\",\n    4712: \"Calamus usitatus\",\n    4713: \"Caryota\",\n    4714: \"Caryota mitis\",\n    4715: \"Drymophloeus\",\n    4716: \"Drymophloeus subdistichus\",\n    4717: \"Nypa\",\n    4718: \"Nypa fruticans\",\n    4719: \"Phoenix\",\n    4720: \"Phoenix reclinata\",\n    4721: \"Serenoa\",\n    4722: \"Serenoa repens\",\n    4724: \"Pandanaceae\",\n    4725: \"Pandanus\",\n    4726: \"Pandanus tectorius\",\n    4729: \"Sparganium\",\n    4731: \"Typhaceae\",\n    4732: \"Typha\",\n    4733: \"Typha latifolia\",\n    4734: \"commelinids\",\n    4736: \"Joinvilleaceae\",\n    4737: \"Joinvillea\",\n    4738: \"Joinvillea plicata\",\n    4739: \"Commelinales\",\n    4740: \"Commelinaceae\",\n    4741: \"Tradescantia\",\n    4742: \"Tradescantia soconuscana\",\n    4743: \"Commelina\",\n    4744: \"Commelina communis\",\n    4747: \"Orchidaceae\",\n    4748: \"x Doritaenopsis\",\n    4749: \"x Doritaenopsis sp.\",\n    4751: \"Fungi\",\n    4753: \"Pneumocystis\",\n    4754: \"Pneumocystis carinii\",\n    4756: \"Neocallimastix\",\n    4757: \"Neocallimastix frontalis\",\n    4758: \"Neocallimastix patriciarum\",\n    4760: \"Neocallimastix joyonii\",\n    4761: \"Chytridiomycota\",\n    4762: \"Oomycetes\",\n    4763: \"Saprolegniales\",\n    4764: \"Saprolegniaceae\",\n    4765: \"Achlya\",\n    4766: \"Achlya bisexualis\",\n    4767: \"Achlya klebsiana\",\n    4768: \"Achlya ambisexualis\",\n    4769: \"Saprolegnia\",\n    4770: \"Saprolegnia ferax\",\n    4772: \"Schizochytrium\",\n    4773: \"Schizochytrium aggregatum\",\n    4774: \"Thraustochytrium\",\n    4775: \"Thraustochytrium visurgense\",\n    4776: \"Peronosporales\",\n    4777: \"Peronosporaceae\",\n    4778: \"Bremia\",\n    4779: \"Bremia lactucae\",\n    4780: \"Plasmopara\",\n    4781: \"Plasmopara halstedii\",\n    4782: \"Pythiaceae\",\n    4783: \"Phytophthora\",\n    4784: \"Phytophthora capsici\",\n    4785: \"Phytophthora cinnamomi\",\n    4786: \"Phytophthora cryptogea\",\n    4787: \"Phytophthora infestans\",\n    4788: \"Phytophthora megasperma\",\n    4790: \"Phytophthora nicotianae\",\n    4791: \"Phytophthora nicotianae var. parasitica\",\n    4792: \"Phytophthora parasitica\",\n    4793: \"Phytophthora citrophthora\",\n    4794: \"Phytophthora drechsleri\",\n    4795: \"Phytophthora megakarya\",\n    4796: \"Phytophthora palmivora\",\n    4797: \"Pythium\",\n    4798: \"Pythium hydnosporum\",\n    4799: \"Pythium torulosum\",\n    4800: \"Lagenidiales\",\n    4801: \"Lagenidiaceae\",\n    4802: \"Lagenidium\",\n    4803: \"Lagenidium giganteum\",\n    4805: \"Blastocladiales\",\n    4806: \"Blastocladiaceae\",\n    4807: \"Blastocladiella\",\n    4808: \"Blastocladiella emersonii\",\n    4809: \"Blastocladiella simplex\",\n    4810: \"Chytridiales\",\n    4812: \"Chytridiaceae\",\n    4813: \"Chytridium\",\n    4814: \"Chytriomyces hyalinus\",\n    4815: \"Spizellomyces\",\n    4816: \"Spizellomyces acuminatus\",\n    4819: \"Phlyctochytrium\",\n    4820: \"Phlyctochytrium irregulare\",\n    4821: \"Piromyces\",\n    4822: \"Piromyces communis\",\n    4823: \"Caecomyces\",\n    4824: \"Caecomyces communis\",\n    4827: \"Mucorales\",\n    4828: \"Absidia\",\n    4829: \"Absidia glauca\",\n    4830: \"Mucor\",\n    4836: \"Phycomyces\",\n    4837: \"Phycomyces blakesleeanus\",\n    4838: \"Rhizomucor\",\n    4839: \"Rhizomucor miehei\",\n    4840: \"Rhizomucor pusillus\",\n    4841: \"Mucor racemosus\",\n    4842: \"Rhizopus\",\n    4843: \"Rhizopus microsporus var. chinensis\",\n    4844: \"Rhizopus niveus\",\n    4846: \"Rhizopus stolonifer\",\n    4847: \"Rhizopus microsporus var. oligosporus\",\n    4849: \"Blakeslea\",\n    4850: \"Blakeslea trispora\",\n    4851: \"Cunninghamellaceae\",\n    4852: \"Cunninghamella\",\n    4853: \"Cunninghamella elegans\",\n    4854: \"Mortierellaceae\",\n    4855: \"Mortierella\",\n    4856: \"Mortierella formosensis\",\n    4857: \"Entomophthorales\",\n    4858: \"Basidiobolaceae\",\n    4859: \"Basidiobolus\",\n    4860: \"Basidiobolus magnus\",\n    4861: \"Kickxellales\",\n    4862: \"Kickxellaceae\",\n    4863: \"Coemansia\",\n    4864: \"Coemansia mojavensis\",\n    4865: \"Dipsacomyces\",\n    4866: \"Dipsacomyces acuminosporus\",\n    4867: \"Linderina\",\n    4868: \"Linderina macrospora\",\n    4869: \"Endogonales\",\n    4870: \"Endogonaceae\",\n    4871: \"Endogone\",\n    4872: \"Endogone pisiformis\",\n    4873: \"Gigaspora\",\n    4874: \"Gigaspora margarita\",\n    4875: \"Glomus\",\n    4876: \"Rhizophagus intraradices\",\n    4880: \"Amoebidium\",\n    4881: \"Amoebidium parasiticum\",\n    4883: \"Legeriomycetaceae\",\n    4884: \"Capniomyces\",\n    4885: \"Capniomyces stellatus\",\n    4886: \"Genistelloides\",\n    4887: \"Genistelloides hibernus\",\n    4888: \"Smittium\",\n    4890: \"Ascomycota\",\n    4891: \"Saccharomycetes\",\n    4892: \"Saccharomycetales\",\n    4893: \"Saccharomycetaceae\",\n    4894: \"Schizosaccharomycetaceae\",\n    4895: \"Schizosaccharomyces\",\n    4896: \"Schizosaccharomyces pombe\",\n    4897: \"Schizosaccharomyces japonicus\",\n    4899: \"Schizosaccharomyces octosporus\",\n    4903: \"Cyberlindnera jadinii\",\n    4908: \"Issatchenkia\",\n    4909: \"Pichia kudriavzevii\",\n    4910: \"Kluyveromyces\",\n    4911: \"Kluyveromyces marxianus\",\n    4914: \"Lachancea waltii\",\n    4917: \"Pachysolen\",\n    4918: \"Pachysolen tannophilus\",\n    4919: \"Pichia\",\n    4920: \"Millerozyma farinosa\",\n    4921: \"Pichia norvegensis\",\n    4922: \"Komagataella pastoris\",\n    4923: \"Ogataea pini\",\n    4924: \"Scheffersomyces stipitis\",\n    4925: \"Pichia sp.\",\n    4926: \"Pichia membranifaciens\",\n    4927: \"Wickerhamomyces anomalus\",\n    4929: \"Meyerozyma guilliermondii\",\n    4930: \"Saccharomyces\",\n    4931: \"Saccharomyces bayanus\",\n    4932: \"Saccharomyces cerevisiae\",\n    4934: \"Lachancea kluyveri\",\n    4935: \"Saccharomyces sp.\",\n    4943: \"Saccharomycopsis\",\n    4944: \"Saccharomycopsis fibuligera\",\n    4947: \"Schwanniomyces occidentalis var. occidentalis\",\n    4948: \"Torulaspora\",\n    4950: \"Torulaspora delbrueckii\",\n    4951: \"Yarrowia\",\n    4952: \"Yarrowia lipolytica\",\n    4953: \"Zygosaccharomyces\",\n    4954: \"Zygosaccharomyces bailii\",\n    4955: \"Lachancea fermentati\",\n    4956: \"Zygosaccharomyces rouxii\",\n    4957: \"Zygosaccharomyces bisporus\",\n    4958: \"Debaryomyces\",\n    4959: \"Debaryomyces hansenii\",\n    4962: \"Williopsis\",\n    4967: \"Eremascus\",\n    4968: \"Eremascus albus\",\n    4970: \"Bullera\",\n    4972: \"Dioszegia hungarica\",\n    4973: \"Dioszegia aurantiaca\",\n    4974: \"Dioszegia crocea\",\n    4975: \"Kwoniella dendrophila\",\n    4976: \"Vishniacozyma globospora\",\n    4978: \"Sugitazyma miyagiana\",\n    4979: \"Hannaella oryzae\",\n    4981: \"Papiliotrema pseudoalba\",\n    4983: \"Hannaella sinensis\",\n    4986: \"Ruinenia rubra\",\n    4987: \"Ballistosporomyces xanthus\",\n    4988: \"Bensingtonia\",\n    4989: \"Bensingtonia ciliata\",\n    4990: \"Pseudobensingtonia ingoldii\",\n    4992: \"Kondoa miscanthi\",\n    4993: \"Bensingtonia naganoensis\",\n    4995: \"Kondoa subrosea\",\n    4996: \"Bannozyma yamatoana\",\n    4997: \"Kondoa yuccicola\",\n    4998: \"Kockovaella\",\n    4999: \"Kockovaella imperatae\",\n    5000: \"Kockovaella thailandica\",\n    5001: \"Sporidiobolus\",\n    5002: \"Sporobolomyces johnsonii\",\n    5003: \"Sporidiobolus pararoseus\",\n    5004: \"Rhodosporidiobolus ruineniae\",\n    5005: \"Sporidiobolus salmonicolor\",\n    5007: \"Brettanomyces bruxellensis\",\n    5008: \"Taphrinales\",\n    5009: \"Taphrinaceae\",\n    5010: \"Taphrina\",\n    5011: \"Taphrina deformans\",\n    5012: \"Taphrina wiesneri\",\n    5014: \"Dothideales\",\n    5015: \"Cochliobolus\",\n    5016: \"Bipolaris maydis\",\n    5017: \"Bipolaris zeicola\",\n    5020: \"Phaeosphaeriaceae\",\n    5021: \"Leptosphaeria\",\n    5022: \"Leptosphaeria maculans\",\n    5023: \"Venturiaceae\",\n    5024: \"Venturia\",\n    5025: \"Venturia inaequalis\",\n    5027: \"Pyrenophora\",\n    5028: \"Pyrenophora graminea\",\n    5032: \"Microstroma\",\n    5033: \"Pseudomicrostroma juglandis\",\n    5036: \"Histoplasma\",\n    5037: \"Histoplasma capsulatum\",\n    5039: \"Blastomyces dermatitidis\",\n    5040: \"Malbranchea\",\n    5041: \"Malbranchea cinnamomea\",\n    5042: \"Eurotiales\",\n    5043: \"Acremonium\",\n    5044: \"Acremonium chrysogenum\",\n    5045: \"Acremonium sp. (in: Ascomycota)\",\n    5046: \"Sarocladium strictum\",\n    5047: \"Epichloe coenophiala\",\n    5050: \"Epichloe uncinata\",\n    5051: \"Acremonium persicinum\",\n    5052: \"Aspergillus\",\n    5053: \"Aspergillus aculeatus\",\n    5054: \"Aspergillus amstelodami\",\n    5057: \"Aspergillus clavatus\",\n    5058: \"Aspergillus ficuum\",\n    5059: \"Aspergillus flavus\",\n    5060: \"Aspergillus giganteus\",\n    5061: \"Aspergillus niger\",\n    5062: \"Aspergillus oryzae\",\n    5063: \"Aspergillus phoenicis\",\n    5064: \"Aspergillus restrictus\",\n    5065: \"Aspergillus sp.\",\n    5066: \"Aspergillus wentii\",\n    5067: \"Aspergillus parasiticus\",\n    5068: \"Aspergillus tubingensis\",\n    5070: \"Aspergillus shirousami\",\n    5071: \"Emericella\",\n    5073: \"Penicillium\",\n    5074: \"Penicillium brevicompactum\",\n    5075: \"Penicillium camemberti\",\n    5076: \"Penicillium chrysogenum\",\n    5077: \"Penicillium citrinum\",\n    5078: \"Penicillium griseofulvum\",\n    5079: \"Penicillium janthinellum\",\n    5081: \"Penicillium sp.\",\n    5082: \"Penicillium roqueforti\",\n    5083: \"Penicillium canescens\",\n    5086: \"Thermoascus\",\n    5087: \"Thermoascus aurantiacus\",\n    5088: \"Thermoascus crustaceus\",\n    5092: \"Byssochlamys\",\n    5093: \"Byssochlamys nivea\",\n    5094: \"Talaromyces\",\n    5095: \"Talaromyces flavus\",\n    5097: \"Monascus\",\n    5098: \"Monascus purpureus\",\n    5100: \"Amorphotheca\",\n    5101: \"Amorphotheca resinae\",\n    5103: \"Ascosphaeraceae\",\n    5104: \"Ascosphaera\",\n    5105: \"Ascosphaera apis\",\n    5106: \"Verticillium\",\n    5107: \"Verticillium sp. (in: Hypocreales)\",\n    5110: \"Claviceps\",\n    5111: \"Claviceps purpurea\",\n    5112: \"Epichloe\",\n    5113: \"Epichloe typhina\",\n    5114: \"Diaporthales\",\n    5115: \"Cryphonectria\",\n    5116: \"Cryphonectria parasitica\",\n    5117: \"Valsaceae\",\n    5118: \"Leucostoma\",\n    5120: \"Erysiphales\",\n    5121: \"Erysiphe\",\n    5125: \"Hypocreales\",\n    5127: \"Fusarium fujikuroi\",\n    5128: \"Fusarium sambucinum\",\n    5129: \"Hypocreaceae\",\n    5130: \"Hypomyces\",\n    5131: \"Hypomyces chrysospermus\",\n    5132: \"Hypomyces rosellus\",\n    5133: \"Nectria\",\n    5135: \"Phyllachorales\",\n    5136: \"Phyllachoraceae\",\n    5139: \"Sordariales\",\n    5140: \"Neurospora\",\n    5141: \"Neurospora crassa\",\n    5142: \"Neurospora intermedia\",\n    5143: \"Neurospora africana\",\n    5144: \"Podospora\",\n    5146: \"Sordaria\",\n    5147: \"Sordaria macrospora\",\n    5148: \"Sordariaceae\",\n    5149: \"Chaetomium\",\n    5150: \"Chaetomium elatum\",\n    5151: \"Ophiostomatales\",\n    5152: \"Ophiostomataceae\",\n    5153: \"Ceratocystiopsis\",\n    5154: \"Ceratocystiopsis alba\",\n    5155: \"Cornuvesica falcata\",\n    5157: \"Ceratocystis\",\n    5158: \"Ceratocystis fimbriata\",\n    5159: \"Ophiostoma\",\n    5160: \"Ceratocystiopsis collifera\",\n    5161: \"Grosmannia crassivaginata\",\n    5162: \"Ophiostoma fasciatum\",\n    5163: \"Ophiostoma ips\",\n    5164: \"Ophiostoma longisporum\",\n    5168: \"Ceratocystiopsis parva\",\n    5169: \"Ceratocystiopsis ranaculosa\",\n    5170: \"Ophiostoma retusum\",\n    5171: \"Ophiostoma sp. UM855\",\n    5173: \"Sporothrix stenoceras\",\n    5174: \"Ophiostoma ulmi\",\n    5175: \"Sphaeronaemella\",\n    5176: \"Sphaeronaemella fimicola\",\n    5178: \"Helotiales\",\n    5179: \"Sclerotinia\",\n    5180: \"Sclerotinia sclerotiorum\",\n    5181: \"Helotiaceae\",\n    5182: \"Hymenoscyphus\",\n    5184: \"Hymenoscyphus monotropae\",\n    5185: \"Pezizales\",\n    5186: \"Pezizaceae\",\n    5187: \"Aleuria\",\n    5188: \"Aleuria aurantia\",\n    5189: \"Ascobolaceae\",\n    5190: \"Ascobolus\",\n    5191: \"Ascobolus immersus\",\n    5192: \"Morchellaceae\",\n    5193: \"Morchella\",\n    5194: \"Morchella conica\",\n    5197: \"Lecanorales\",\n    5198: \"Cladoniaceae\",\n    5199: \"Cladonia\",\n    5200: \"Cladonia merochlorophaea\",\n    5201: \"Cladonia chlorophaea\",\n    5204: \"Basidiomycota\",\n    5206: \"Cryptococcus\",\n    5207: \"Cryptococcus neoformans\",\n    5208: \"Cryptococcus depauperatus\",\n    5209: \"Filobasidium\",\n    5210: \"Filobasidium floriforme\",\n    5211: \"Piskurozyma capsuligena\",\n    5212: \"Filobasidium uniguttulatum\",\n    5215: \"Tremellaceae\",\n    5217: \"Tremella mesenterica\",\n    5218: \"Exidia\",\n    5219: \"Exidia glandulosa\",\n    5220: \"Trimorphomyces\",\n    5221: \"Trimorphomyces papilionaceus\",\n    5222: \"Phleogenaceae\",\n    5223: \"Phleogena\",\n    5224: \"Phleogena faginea\",\n    5226: \"Auriculariales\",\n    5227: \"Auriculariaceae\",\n    5228: \"Atractiella\",\n    5229: \"Atractiella solani\",\n    5230: \"Auricularia\",\n    5233: \"Colacogloea peniophorae\",\n    5234: \"Tremellales\",\n    5235: \"Efibulobasidium\",\n    5236: \"Efibulobasidium albescens\",\n    5237: \"Tulasnellaceae\",\n    5238: \"Thanatephorus\",\n    5240: \"Tulasnella\",\n    5241: \"Tulasnella violea\",\n    5242: \"Uthatobasidium\",\n    5244: \"Septobasidiales\",\n    5245: \"Septobasidiaceae\",\n    5246: \"Septobasidium\",\n    5247: \"Septobasidium carestianum\",\n    5250: \"Ceratobasidiaceae\",\n    5251: \"Ceratobasidium\",\n    5252: \"Ceratobasidium cornigerum\",\n    5254: \"Dacrymycetaceae\",\n    5255: \"Dacrymyces\",\n    5256: \"Dacrymyces deliquescens\",\n    5257: \"Ustilaginomycetes\",\n    5258: \"Pucciniales\",\n    5259: \"Melampsoraceae\",\n    5260: \"Melampsora\",\n    5261: \"Melampsora lini\",\n    5262: \"Pucciniaceae\",\n    5263: \"Uromyces\",\n    5264: \"Uromyces appendiculatus\",\n    5265: \"Gymnosporangium\",\n    5266: \"Gymnosporangium clavariiforme\",\n    5267: \"Ustilaginales\",\n    5268: \"Ustilaginaceae\",\n    5269: \"Ustilago\",\n    5270: \"Ustilago maydis\",\n    5271: \"Ustilago sphaerogena\",\n    5272: \"Microbotryum violaceum\",\n    5274: \"Graphiolaceae\",\n    5275: \"Graphiola\",\n    5276: \"Graphiola phoenicis\",\n    5277: \"Leucosporidium\",\n    5278: \"Leucosporidium scottii\",\n    5279: \"Tilletiaceae\",\n    5280: \"Tilletiaria\",\n    5281: \"Tilletiaria anomala\",\n    5286: \"Rhodotorula toruloides\",\n    5288: \"Rhodotorula diobovata\",\n    5296: \"Puccinia\",\n    5297: \"Puccinia graminis\",\n    5298: \"Puccinia poarum\",\n    5300: \"Coleosporium\",\n    5301: \"Coleosporium tussilaginis\",\n    5302: \"Agaricomycotina\",\n    5303: \"Polyporales\",\n    5304: \"Corticiaceae\",\n    5305: \"Phanerochaete\",\n    5306: \"Phanerochaete chrysosporium\",\n    5307: \"Phlebia\",\n    5308: \"Phlebia radiata\",\n    5309: \"Athelia\",\n    5310: \"Athelia bombacina\",\n    5314: \"Ganoderma\",\n    5315: \"Ganoderma lucidum\",\n    5317: \"Polyporaceae\",\n    5318: \"Irpex\",\n    5319: \"Irpex lacteus\",\n    5320: \"Pleurotus\",\n    5321: \"Pleurotus cornucopiae\",\n    5322: \"Pleurotus ostreatus\",\n    5323: \"Pleurotus eryngii\",\n    5324: \"Trametes\",\n    5325: \"Trametes versicolor\",\n    5326: \"Coriolus\",\n    5327: \"Trametes hirsuta\",\n    5328: \"Spongipellis\",\n    5329: \"Spongipellis unicolor\",\n    5330: \"Bjerkandera\",\n    5331: \"Bjerkandera adusta\",\n    5332: \"Schizophyllaceae\",\n    5333: \"Schizophyllum\",\n    5334: \"Schizophyllum commune\",\n    5335: \"Schizophyllum sp.\",\n    5336: \"Endophyllum\",\n    5337: \"Endophyllum sempervivi\",\n    5338: \"Agaricales\",\n    5339: \"Agaricaceae\",\n    5340: \"Agaricus\",\n    5341: \"Agaricus bisporus\",\n    5342: \"Agaricus edulis\",\n    5343: \"Agaricus bitorquis\",\n    5345: \"Coprinus\",\n    5346: \"Coprinopsis cinerea\",\n    5347: \"Coprinellus congregatus\",\n    5350: \"Coprinopsis radiata\",\n    5351: \"Tricholomataceae\",\n    5352: \"Lentinula\",\n    5353: \"Lentinula edodes\",\n    5354: \"Lentinellus\",\n    5355: \"Lentinellus montanus\",\n    5356: \"Lentinellus omphalodes\",\n    5357: \"Lentinus\",\n    5358: \"Lentinus crinitus\",\n    5360: \"Neolentinus kauffmanii\",\n    5362: \"Neolentinus ponderosus\",\n    5363: \"Lentinus strigosus\",\n    5364: \"Heliocybe sulcata\",\n    5365: \"Lentinus tigrinus\",\n    5367: \"Lentinus velutinus\",\n    5368: \"Boletaceae\",\n    5369: \"Boletus\",\n    5370: \"Rubroboletus satanas\",\n    5371: \"Paragyrodon\",\n    5372: \"Paragyrodon sphaerosporus\",\n    5373: \"Phylloporus\",\n    5374: \"Phylloporus rhodoxanthus\",\n    5375: \"Rhizopogon\",\n    5376: \"Rhizopogon subcaerulescens\",\n    5377: \"Rhizopogon ochraceorubens\",\n    5379: \"Suillus\",\n    5380: \"Suillus cavipes\",\n    5381: \"Suillus sinuspaulianus\",\n    5382: \"Suillus grevillei\",\n    5383: \"Suillus spraguei\",\n    5384: \"Suillus luteus\",\n    5385: \"Xerocomus\",\n    5387: \"Gastrosuillus\",\n    5388: \"Gastrosuillus luricinus\",\n    5389: \"Gomphidiaceae\",\n    5390: \"Chroogomphus\",\n    5391: \"Chroogomphus vinicolor\",\n    5392: \"Gomphidius\",\n    5393: \"Gomphidius glutinosus\",\n    5394: \"Paxillaceae\",\n    5395: \"Paxillus\",\n    5398: \"Bolbitiaceae\",\n    5399: \"Agrocybe\",\n    5400: \"Agrocybe aegerita\",\n    5401: \"Russulaceae\",\n    5402: \"Russula\",\n    5403: \"Russula cyanoxantha\",\n    5404: \"Exobasidiales\",\n    5405: \"Exobasidiaceae\",\n    5406: \"Exobasidium\",\n    5407: \"Exobasidium vaccinii\",\n    5408: \"Filobasidiaceae\",\n    5410: \"Cystofilobasidium\",\n    5411: \"Cystofilobasidium bisporidii\",\n    5412: \"Cystofilobasidium capitatum\",\n    5413: \"Erythrobasidium\",\n    5414: \"Erythrobasidium hasegawianum\",\n    5416: \"Saitozyma flava\",\n    5417: \"Vanrija humicola\",\n    5418: \"Papiliotrema laurentii\",\n    5421: \"Xanthophyllomyces dendrorhous\",\n    5422: \"Kabatiella\",\n    5423: \"Kabatiella microsticta\",\n    5426: \"Lycoperdaceae\",\n    5427: \"Lycoperdon\",\n    5428: \"Lycoperdon pyriforme\",\n    5429: \"Sporobolomyces\",\n    5432: \"Erythrobasidium elongatum\",\n    5433: \"Colacogloea falcata\",\n    5434: \"Symmetrospora foliicola\",\n    5435: \"Symmetrospora gracilis\",\n    5436: \"Chrysozyma griseoflava\",\n    5438: \"Fellozyma inositophila\",\n    5439: \"Buckleyzyma kluyveri-nielii\",\n    5440: \"Cystobasidiopsis lactophilus\",\n    5441: \"[Sporobolomyces] oryzicola\",\n    5442: \"Buckleyzyma phyllomatis\",\n    5443: \"Buckleyzyma salicina\",\n    5444: \"Ballistosporomyces sasicola\",\n    5445: \"Hamamotoa singularis\",\n    5446: \"Phyllozyma subbrunnea\",\n    5447: \"Slooffia tsugae\",\n    5450: \"Arthromyces\",\n    5451: \"Agaricales sp. 'Arthromyces ramosus'\",\n    5453: \"Ascochyta\",\n    5454: \"Ascochyta rabiei\",\n    5455: \"Colletotrichum\",\n    5456: \"Colletotrichum capsici\",\n    5460: \"Colletotrichum caudatum\",\n    5461: \"Colletotrichum fuscum\",\n    5462: \"Colletotrichum lagenaria\",\n    5463: \"Colletotrichum malvarum\",\n    5464: \"Colletotrichum musae\",\n    5465: \"Colletotrichum orbiculare\",\n    5466: \"Colletotrichum trifolii\",\n    5467: \"Colletotrichum truncatum\",\n    5468: \"Robillarda\",\n    5470: \"Robillarda sp.\",\n    5473: \"Leptoxyphium\",\n    5474: \"Leptoxyphium fumago\",\n    5475: \"Candida\",\n    5476: \"Candida albicans\",\n    5477: \"[Candida] boidinii\",\n    5478: \"[Candida] glabrata\",\n    5479: \"Candida maltosa\",\n    5480: \"Candida parapsilosis\",\n    5481: \"Diutina rugosa\",\n    5482: \"Candida tropicalis\",\n    5483: \"Pseudozyma tsukubaensis\",\n    5486: \"Candida viswanathii\",\n    5488: \"Wickerhamiella azyma\",\n    5489: \"Saturnispora diversa\",\n    5490: \"Starmerella magnoliae\",\n    5491: \"Candida melibiosica\",\n    5492: \"[Candida] rugopelliculosa\",\n    5493: \"[Candida] zeylanoides\",\n    5495: \"[Candida] nitratophila\",\n    5498: \"Cladosporium\",\n    5499: \"Passalora fulva\",\n    5500: \"Coccidioides\",\n    5501: \"Coccidioides immitis\",\n    5502: \"Curvularia\",\n    5503: \"Curvularia lunata\",\n    5506: \"Fusarium\",\n    5507: \"Fusarium oxysporum\",\n    5508: \"Fusarium oxysporum f. sp. cucumerinum\",\n    5514: \"Fusarium sporotrichioides\",\n    5515: \"Fusarium acuminatum\",\n    5516: \"Fusarium culmorum\",\n    5518: \"Fusarium graminearum\",\n    5520: \"Microdochium nivale\",\n    5523: \"Fusarium lateritium\",\n    5526: \"Humicola\",\n    5528: \"Humicola grisea var. thermoidea\",\n    5529: \"Metarhizium\",\n    5530: \"Metarhizium anisopliae\",\n    5531: \"Myrothecium\",\n    5533: \"Rhodotorula\",\n    5535: \"Rhodotorula glutinis\",\n    5537: \"Rhodotorula mucilaginosa\",\n    5538: \"Scytalidium\",\n    5539: \"Scytalidium lignicola\",\n    5540: \"Thermomyces\",\n    5541: \"Thermomyces lanuginosus\",\n    5543: \"Trichoderma\",\n    5544: \"Trichoderma harzianum\",\n    5547: \"Trichoderma viride\",\n    5548: \"Trichoderma longibrachiatum\",\n    5549: \"Trichoderma saturnisporum\",\n    5550: \"Trichophyton\",\n    5551: \"Trichophyton rubrum\",\n    5552: \"Trichosporon\",\n    5553: \"Trichosporon beigelii\",\n    5554: \"Cutaneotrichosporon cutaneum\",\n    5562: \"Gloeocercospora\",\n    5566: \"Sclerotium hydrophilum\",\n    5569: \"Cenococcum\",\n    5570: \"Cenococcum geophilum\",\n    5574: \"Helicobasidium purpureum\",\n    5575: \"Tricharina hiemalis\",\n    5579: \"Aureobasidium\",\n    5580: \"Aureobasidium pullulans\",\n    5581: \"Beauveria\",\n    5583: \"Exophiala\",\n    5584: \"Exophiala jeanselmei\",\n    5585: \"Phaeococcus\",\n    5586: \"Phaeococcus exophiales\",\n    5587: \"Rhinocladiella\",\n    5588: \"Rhinocladiella atrovirens\",\n    5589: \"Xylohypha\",\n    5592: \"Microascales\",\n    5593: \"Microascaceae\",\n    5594: \"Microascus\",\n    5595: \"Microascus cirrosus\",\n    5596: \"Pseudallescheria\",\n    5597: \"Scedosporium boydii\",\n    5598: \"Alternaria\",\n    5599: \"Alternaria alternata\",\n    5600: \"Phialophora\",\n    5601: \"Phialophora americana\",\n    5605: \"Saitoella\",\n    5606: \"Saitoella complicata\",\n    5607: \"Fellomyces\",\n    5609: \"Kockovaella fuzhouensis\",\n    5610: \"Fellomyces penicillatus\",\n    5611: \"Fellomyces polyborus\",\n    5612: \"Kurtzmanomyces\",\n    5613: \"Kurtzmanomyces nectairei\",\n    5615: \"Sterigmatomyces\",\n    5616: \"Sterigmatomyces elviae\",\n    5617: \"Sterigmatomyces halophilus\",\n    5618: \"Tsuchiyaea\",\n    5619: \"Cryptococcus wingfieldii\",\n    5620: \"Zygoascus\",\n    5621: \"Zygoascus hellenicus\",\n    5624: \"Collybia\",\n    5625: \"Collybia earleae\",\n    5626: \"Grifola\",\n    5627: \"Grifola frondosa\",\n    5629: \"Laetiporus\",\n    5630: \"Laetiporus sulphureus\",\n    5631: \"Lenzites\",\n    5632: \"Lenzites betulinus\",\n    5633: \"Ossicaulis\",\n    5634: \"Ossicaulis lignatilis\",\n    5635: \"Panellus\",\n    5636: \"Panellus stipticus\",\n    5637: \"Polyporus\",\n    5639: \"Polyporus arcularius\",\n    5640: \"Polyporus squamosus\",\n    5641: \"Polyporus squamulosus\",\n    5642: \"Pycnoporus\",\n    5643: \"Trametes cinnabarina\",\n    5644: \"Stereum\",\n    5645: \"Stereum complicatum\",\n    5647: \"Sterigmatosporidium polymorphum\",\n    5653: \"Kinetoplastida\",\n    5654: \"Trypanosomatidae\",\n    5655: \"Crithidia\",\n    5656: \"Crithidia fasciculata\",\n    5657: \"Strigomonas oncopelti\",\n    5658: \"Leishmania\",\n    5659: \"Leishmania amazonensis\",\n    5660: \"Leishmania braziliensis\",\n    5661: \"Leishmania donovani\",\n    5663: \"Leishmania enriettii\",\n    5664: \"Leishmania major\",\n    5665: \"Leishmania mexicana\",\n    5666: \"Leishmania tropica\",\n    5667: \"Leishmania aethiopica\",\n    5670: \"Leishmania guyanensis\",\n    5671: \"Leishmania infantum\",\n    5674: \"Leishmania adleri\",\n    5677: \"Leishmania lainsoni\",\n    5678: \"Leishmania naiffi\",\n    5679: \"Leishmania panamensis\",\n    5680: \"Leishmania shawi\",\n    5681: \"Leishmania peruviana\",\n    5682: \"Leishmania pifanoi\",\n    5683: \"Leptomonas\",\n    5684: \"Leptomonas seymouri\",\n    5685: \"Leptomonas sp.\",\n    5688: \"lizard Leishmania\",\n    5689: \"Leishmania tarentolae\",\n    5690: \"Trypanosoma\",\n    5691: \"Trypanosoma brucei\",\n    5692: \"Trypanosoma congolense\",\n    5693: \"Trypanosoma cruzi\",\n    5694: \"Trypanosoma equiperdum\",\n    5695: \"Trypanosoma lewisi\",\n    5696: \"Trypanosoma sp.\",\n    5697: \"Trypanosoma evansi\",\n    5698: \"Trypanosoma rangeli\",\n    5699: \"Trypanosoma vivax\",\n    5701: \"Trypanosoma simiae\",\n    5702: \"Trypanosoma brucei brucei\",\n    5703: \"Endotrypanum\",\n    5704: \"Endotrypanum schaudinni\",\n    5705: \"Endotrypanum monterogeii\",\n    5706: \"Phytomonas\",\n    5707: \"Phytomonas serpens\",\n    5708: \"Bodonidae\",\n    5709: \"Trypanoplasma\",\n    5710: \"Trypanoplasma borreli\",\n    5712: \"Bodo\",\n    5714: \"Herpetomonas\",\n    5715: \"Herpetomonas samuelpessoai\",\n    5717: \"Herpetomonas megaseliae\",\n    5718: \"Herpetomonas muscarum\",\n    5719: \"Parabasalia\",\n    5721: \"Trichomonas\",\n    5722: \"Trichomonas vaginalis\",\n    5723: \"Tritrichomonas\",\n    5725: \"Tritrichomonas augusta\",\n    5726: \"Tritrichomonas muris\",\n    5727: \"Pentatrichomonas\",\n    5728: \"Pentatrichomonas hominis\",\n    5729: \"Tetratrichomonas\",\n    5730: \"Tetratrichomonas gallinarum\",\n    5731: \"Trichomitus\",\n    5732: \"Trichomitus batrachorum\",\n    5734: \"Hypotrichomonas\",\n    5735: \"Hypotrichomonas acosta\",\n    5736: \"Monocercomonas\",\n    5737: \"Monocercomonas sp.\",\n    5738: \"Diplomonadida\",\n    5739: \"Hexamitidae\",\n    5740: \"Giardia\",\n    5741: \"Giardia intestinalis\",\n    5742: \"Giardia muris\",\n    5743: \"Giardia ardeae\",\n    5744: \"Giardia sp.\",\n    5747: \"Eustigmatophyceae\",\n    5748: \"Nannochloropsis\",\n    5752: \"Heterolobosea\",\n    5754: \"Acanthamoeba\",\n    5755: \"Acanthamoeba castellanii\",\n    5756: \"Acanthamoeba sp.\",\n    5757: \"Acanthamoeba polyphaga\",\n    5758: \"Entamoeba\",\n    5759: \"Entamoeba histolytica\",\n    5761: \"Naegleria\",\n    5762: \"Naegleria gruberi\",\n    5763: \"Naegleria fowleri\",\n    5764: \"Naegleria andersoni\",\n    5765: \"Vahlkampfiidae\",\n    5768: \"Tetramitus\",\n    5769: \"Tetramitus rostratus\",\n    5770: \"Vahlkampfia\",\n    5771: \"Vahlkampfia lobospinosa\",\n    5774: \"Amoeba\",\n    5775: \"Amoeba proteus\",\n    5776: \"Hartmannellidae\",\n    5777: \"Hartmannella\",\n    5778: \"Vermamoeba vermiformis\",\n    5782: \"Dictyostelium\",\n    5784: \"Dictyostelium sp.\",\n    5785: \"Dictyostelium sp. (STRAIN GA11)\",\n    5786: \"Dictyostelium purpureum\",\n    5787: \"Dictyostelium giganteum\",\n    5789: \"Physariida\",\n    5790: \"Physarum\",\n    5791: \"Physarum polycephalum\",\n    5792: \"Didymium\",\n    5793: \"Didymium iridis\",\n    5794: \"Apicomplexa\",\n    5796: \"Coccidia\",\n    5799: \"Eimeriidae\",\n    5800: \"Eimeria\",\n    5801: \"Eimeria acervulina\",\n    5802: \"Eimeria tenella\",\n    5803: \"Eimeria bovis\",\n    5804: \"Eimeria maxima\",\n    5806: \"Cryptosporidium\",\n    5807: \"Cryptosporidium parvum\",\n    5808: \"Cryptosporidium muris\",\n    5809: \"Sarcocystidae\",\n    5810: \"Toxoplasma\",\n    5811: \"Toxoplasma gondii\",\n    5812: \"Sarcocystis\",\n    5813: \"Sarcocystis muris\",\n    5814: \"Sarcocystis gigantea\",\n    5815: \"Sarcocystis arieticanis\",\n    5816: \"Sarcocystis capracanis\",\n    5817: \"Sarcocystis cruzi\",\n    5818: \"Sarcocystis tenella\",\n    5819: \"Haemosporida\",\n    5820: \"Plasmodium\",\n    5821: \"Plasmodium berghei\",\n    5823: \"Plasmodium berghei ANKA\",\n    5824: \"Plasmodium brasilianum\",\n    5825: \"Plasmodium chabaudi\",\n    5826: \"Plasmodium chabaudi adami\",\n    5827: \"Plasmodium cynomolgi\",\n    5828: \"Plasmodium cynomolgi strain Berok\",\n    5829: \"Plasmodium cynomolgi strain Ceylon\",\n    5830: \"Plasmodium cynomolgi strain Gombak\",\n    5831: \"Plasmodium cynomolgi strain London\",\n    5832: \"Plasmodium cynomolgi strain Mulligan/NIH\",\n    5833: \"Plasmodium falciparum\",\n    5834: \"Plasmodium falciparum RO-33\",\n    5835: \"Plasmodium falciparum CAMP/Malaysia\",\n    5836: \"Plasmodium falciparum CDC/Honduras\",\n    5837: \"Plasmodium falciparum FC27/Papua New Guinea\",\n    5838: \"Plasmodium falciparum FCR-3/Gambia\",\n    5839: \"Plasmodium falciparum K1\",\n    5840: \"Plasmodium falciparum LE5\",\n    5841: \"Plasmodium falciparum Mad20/Papua New Guinea\",\n    5842: \"Plasmodium falciparum NF7/Ghana\",\n    5843: \"Plasmodium falciparum NF54\",\n    5845: \"Plasmodium falciparum FCM17/Senegal\",\n    5846: \"Plasmodium falciparum T4/Thailand\",\n    5847: \"Plasmodium falciparum V1\",\n    5848: \"Plasmodium falciparum isolate WELLCOME\",\n    5849: \"Plasmodium gallinaceum\",\n    5850: \"Plasmodium knowlesi\",\n    5851: \"Plasmodium knowlesi strain H\",\n    5852: \"Plasmodium knowlesi strain Nuri\",\n    5853: \"Plasmodium lophurae\",\n    5854: \"Plasmodium reichenowi\",\n    5855: \"Plasmodium vivax\",\n    5857: \"Plasmodium fragile\",\n    5858: \"Plasmodium malariae\",\n    5859: \"Plasmodium simium\",\n    5860: \"Plasmodium vinckei\",\n    5861: \"Plasmodium yoelii\",\n    5862: \"Plasmodium berghei yoelii\",\n    5863: \"Piroplasmida\",\n    5864: \"Babesia\",\n    5865: \"Babesia bovis\",\n    5866: \"Babesia bigemina\",\n    5867: \"Babesia canis\",\n    5868: \"Babesia microti\",\n    5869: \"Babesia ovis\",\n    5870: \"Babesia rodhaini\",\n    5871: \"Babesia caballi\",\n    5872: \"Theileria equi\",\n    5873: \"Theileria\",\n    5874: \"Theileria annulata\",\n    5875: \"Theileria parva\",\n    5876: \"Theileria buffeli\",\n    5877: \"Theileria sergenti\",\n    5878: \"Ciliophora\",\n    5882: \"Glaucoma\",\n    5883: \"Glaucoma chattoni\",\n    5884: \"Paramecium\",\n    5885: \"Paramecium caudatum\",\n    5886: \"Paramecium primaurelia\",\n    5887: \"Paramecium sp.\",\n    5888: \"Paramecium tetraurelia\",\n    5889: \"Paramecium aurelia\",\n    5890: \"Tetrahymena\",\n    5891: \"Tetrahymena americanis\",\n    5892: \"Tetrahymena australis\",\n    5893: \"Tetrahymena borealis\",\n    5894: \"Tetrahymena canadensis\",\n    5895: \"Tetrahymena capricornis\",\n    5896: \"Tetrahymena caudata\",\n    5897: \"Tetrahymena elliotti\",\n    5898: \"Tetrahymena furgasoni\",\n    5899: \"Tetrahymena hyperangularis\",\n    5900: \"Tetrahymena leucophrys\",\n    5901: \"Tetrahymena malaccensis\",\n    5902: \"Tetrahymena mimbres\",\n    5903: \"Tetrahymena nanneyi\",\n    5905: \"Tetrahymena paravorax\",\n    5906: \"Tetrahymena patula\",\n    5907: \"Tetrahymena pigmentosa\",\n    5908: \"Tetrahymena pyriformis\",\n    5909: \"Tetrahymena rostrata\",\n    5910: \"Tetrahymena sonneborni\",\n    5911: \"Tetrahymena thermophila\",\n    5912: \"Tetrahymena tropicalis\",\n    5913: \"Tetrahymena asiatica\",\n    5914: \"Tetrahymena corlissi\",\n    5916: \"Tetrahymena limacis\",\n    5917: \"Tetrahymena setosa\",\n    5918: \"Tetrahymena silvana\",\n    5919: \"Tetrahymena vorax\",\n    5921: \"Tetrahymena cosmopolitanis\",\n    5922: \"Tetrahymena nipissingi\",\n    5923: \"Tetrahymena hegewischi\",\n    5926: \"Colpidium\",\n    5927: \"Dexiostoma campyla\",\n    5928: \"Colpidium colpoda\",\n    5931: \"Ichthyophthirius\",\n    5932: \"Ichthyophthirius multifiliis\",\n    5934: \"Hypotrichia\",\n    5935: \"Euplotes\",\n    5936: \"Moneuplotes crassus\",\n    5938: \"Euplotes raikovi\",\n    5939: \"Euplotes vannus\",\n    5940: \"Euplotes aediculatus\",\n    5941: \"Euplotes eurystomus\",\n    5942: \"Euplotes woodruffi\",\n    5943: \"Oxytricha\",\n    5944: \"Oxytricha fallax\",\n    5947: \"Oxytricha granulifera\",\n    5948: \"Stylonychia\",\n    5949: \"Stylonychia lemnae\",\n    5950: \"Stylonychia mytilus\",\n    5955: \"Uronychia\",\n    5956: \"Uronychia sp.\",\n    5957: \"Heterotrichida\",\n    5959: \"Blepharisma\",\n    5960: \"Blepharisma americanum\",\n    5961: \"Blepharisma japonicum\",\n    5962: \"Stentor\",\n    5963: \"Stentor coeruleus\",\n    5964: \"Metopus\",\n    5965: \"Heterometopus palaeformis\",\n    5970: \"Exophiala dermatitidis\",\n    5972: \"Halteriidae\",\n    5973: \"Halteria\",\n    5974: \"Halteria grandinella\",\n    5977: \"Colpodea\",\n    5978: \"Colpodidae\",\n    5979: \"Colpoda\",\n    5980: \"Colpoda inflata\",\n    5981: \"Bresslaua\",\n    5982: \"Bresslaua vorax\",\n    5985: \"Isotrichidae\",\n    5986: \"Isotricha\",\n    5987: \"Isotricha prostoma\",\n    5988: \"Litostomatea\",\n    5989: \"Haptorida\",\n    5991: \"Chaenea\",\n    5992: \"Chaenea vorax\",\n    5993: \"Enchelys\",\n    5994: \"Enchelys pelucida\",\n    5996: \"Didinium\",\n    5997: \"Didinium nasutum\",\n    6000: \"Prostomatea\",\n    6001: \"Prorodontida\",\n    6002: \"Colepidae\",\n    6003: \"Coleps\",\n    6004: \"Coleps sp.\",\n    6008: \"Loxodes\",\n    6009: \"Loxodes striatus\",\n    6013: \"Paraurostyla\",\n    6014: \"Paraurostyla sp.\",\n    6015: \"Nassophorea\",\n    6018: \"Pseudomicrothorax\",\n    6019: \"Pseudomicrothorax sp.\",\n    6020: \"Oligohymenophorea\",\n    6021: \"Peritrichia\",\n    6025: \"Opisthonecta\",\n    6026: \"Opisthonecta henneguyi\",\n    6027: \"Onychodromus\",\n    6028: \"Onychodromus quadricornutus\",\n    6029: \"Microsporidia\",\n    6032: \"Apansporoblastina\",\n    6033: \"Encephalitozoon\",\n    6035: \"Encephalitozoon cuniculi\",\n    6036: \"Pansporoblastina\",\n    6037: \"Burenellidae\",\n    6038: \"Vairimorpha\",\n    6039: \"Vairimorpha necatrix\",\n    6040: \"Porifera\",\n    6042: \"Demospongiae\",\n    6045: \"Geodiidae\",\n    6046: \"Geodia\",\n    6047: \"Geodia cydonium\",\n    6049: \"Haplosclerida\",\n    6050: \"Spongillidae\",\n    6051: \"Ephydatia\",\n    6052: \"Ephydatia muelleri\",\n    6054: \"Spongilla\",\n    6055: \"Spongilla lacustris\",\n    6056: \"Chalinidae\",\n    6057: \"Haliclona\",\n    6058: \"Haliclona oculata\",\n    6060: \"Halichondriidae\",\n    6061: \"Halichondria\",\n    6062: \"Halichondria japonica\",\n    6063: \"Halichondria panicea\",\n    6065: \"Hymeniacidon\",\n    6068: \"Dictyonella\",\n    6069: \"Dictyonella incisa\",\n    6070: \"Spongosorites\",\n    6071: \"Spongosorites genitrix\",\n    6072: \"Eumetazoa\",\n    6073: \"Cnidaria\",\n    6074: \"Hydrozoa\",\n    6077: \"Corynidae\",\n    6078: \"Sarsia\",\n    6079: \"Sarsia sp.\",\n    6080: \"Hydridae\",\n    6082: \"Hydra viridissima\",\n    6083: \"Hydra\",\n    6086: \"Hydra sp.\",\n    6087: \"Hydra vulgaris\",\n    6088: \"Hydra oligactis\",\n    6089: \"Polyorchidae\",\n    6090: \"Polyorchis\",\n    6091: \"Polyorchis penicillatus\",\n    6092: \"Spirocodon\",\n    6093: \"Spirocodon saltatrix\",\n    6094: \"Hydractiniidae\",\n    6095: \"Podocoryna\",\n    6096: \"Podocoryna carnea\",\n    6098: \"Campanulinidae\",\n    6099: \"Aequorea\",\n    6100: \"Aequorea victoria\",\n    6101: \"Anthozoa\",\n    6102: \"Hexacorallia\",\n    6103: \"Actiniaria\",\n    6104: \"Actinia\",\n    6105: \"Actinia tenebrosa\",\n    6106: \"Actinia equina\",\n    6107: \"Anemonia\",\n    6108: \"Anemonia sulcata\",\n    6109: \"Anthopleura\",\n    6110: \"Anthopleura elegantissima\",\n    6111: \"Anthopleura fuscoviridis\",\n    6112: \"Anthopleura xanthogrammica\",\n    6113: \"Calliactis\",\n    6114: \"Calliactis parasitica\",\n    6115: \"Metridium\",\n    6116: \"Metridium senile\",\n    6118: \"Entacmaea quadricolor\",\n    6120: \"Heteractis sp.\",\n    6122: \"Stichodactyla\",\n    6123: \"Stichodactyla helianthus\",\n    6124: \"Stichodactyla sp.\",\n    6125: \"Scleractinia\",\n    6126: \"Acroporidae\",\n    6127: \"Acropora\",\n    6129: \"Acropora latistella\",\n    6130: \"Acropora cervicornis\",\n    6131: \"Acropora palmata\",\n    6132: \"Octocorallia\",\n    6133: \"Pennatulacea\",\n    6134: \"Renilla\",\n    6135: \"Renilla koellikeri\",\n    6136: \"Renilla reniformis\",\n    6137: \"Cubozoa\",\n    6139: \"Carybdeidae\",\n    6140: \"Tripedalia\",\n    6141: \"Tripedalia cystophora\",\n    6142: \"Scyphozoa\",\n    6143: \"Semaeostomeae\",\n    6144: \"Aurelia\",\n    6145: \"Aurelia aurita\",\n    6146: \"Pelagiidae\",\n    6147: \"Chrysaora\",\n    6148: \"Chrysaora quinquecirrha\",\n    6149: \"Nemopsis\",\n    6150: \"Nemopsis dofleini\",\n    6151: \"Eunicella\",\n    6152: \"Eunicella stricta\",\n    6153: \"Forskalia\",\n    6154: \"Forskalia edwardsi\",\n    6157: \"Platyhelminthes\",\n    6159: \"Tricladida\",\n    6160: \"Dugesia\",\n    6161: \"Dugesia japonica\",\n    6162: \"Girardia tigrina\",\n    6163: \"Polycladida\",\n    6166: \"Planoceridae\",\n    6167: \"Planocera\",\n    6168: \"Planocera reticulata\",\n    6169: \"Lecithoepitheliata\",\n    6170: \"Prorhynchidae\",\n    6171: \"Geocentrophora\",\n    6172: \"Geocentrophora baltica\",\n    6173: \"Geocentrophora incognita\",\n    6174: \"Geocentrophora intersticialis\",\n    6175: \"Geocentrophora porfirievae\",\n    6176: \"Geocentrophora sphyrocephala\",\n    6177: \"Geocentrophora wasiliewi\",\n    6178: \"Trematoda\",\n    6179: \"Digenea\",\n    6180: \"Strigeidida\",\n    6181: \"Schistosoma\",\n    6182: \"Schistosoma japonicum\",\n    6183: \"Schistosoma mansoni\",\n    6184: \"Schistosoma bovis\",\n    6185: \"Schistosoma haematobium\",\n    6186: \"Schistosoma curassoni\",\n    6187: \"Schistosoma intercalatum\",\n    6188: \"Schistosoma rodhaini\",\n    6189: \"Schistosoma spindale\",\n    6191: \"Fasciola\",\n    6192: \"Fasciola hepatica\",\n    6193: \"Opisthorchiida\",\n    6194: \"Opisthorchiata\",\n    6196: \"Opisthorchiidae\",\n    6197: \"Opisthorchis\",\n    6198: \"Opisthorchis viverrini\",\n    6199: \"Cestoda\",\n    6200: \"Eucestoda\",\n    6201: \"Cyclophyllidea\",\n    6202: \"Taenia\",\n    6203: \"Taenia ovis\",\n    6204: \"Taenia solium\",\n    6205: \"Hydatigera taeniaeformis\",\n    6206: \"Taenia saginata\",\n    6207: \"Taenia crassiceps\",\n    6208: \"Taeniidae\",\n    6209: \"Echinococcus\",\n    6210: \"Echinococcus granulosus\",\n    6211: \"Echinococcus multilocularis\",\n    6212: \"Echinococcus oligarthrus\",\n    6213: \"Echinococcus vogeli\",\n    6214: \"Hymenolepididae\",\n    6215: \"Hymenolepis\",\n    6216: \"Hymenolepis diminuta\",\n    6217: \"Nemertea\",\n    6218: \"Pilidiophora\",\n    6219: \"Heteronemertea\",\n    6220: \"Cerebratulus\",\n    6221: \"Cerebratulus lacteus\",\n    6222: \"Lineidae\",\n    6223: \"Lineus\",\n    6225: \"Enopla\",\n    6226: \"Hoplonemertea\",\n    6227: \"Monostilifera\",\n    6228: \"Emplectonematidae\",\n    6229: \"Emplectonema\",\n    6230: \"Emplectonema gracile\",\n    6231: \"Nematoda\",\n    6232: \"Panagrellus\",\n    6233: \"Panagrellus redivivus\",\n    6234: \"Panagrellus silusiae\",\n    6236: \"Rhabditida\",\n    6237: \"Caenorhabditis\",\n    6238: \"Caenorhabditis briggsae\",\n    6239: \"Caenorhabditis elegans\",\n    6243: \"Rhabditidae\",\n    6244: \"Rhabditis\",\n    6245: \"Rhabditis tokai\",\n    6246: \"Strongyloididae\",\n    6247: \"Strongyloides\",\n    6248: \"Strongyloides stercoralis\",\n    6249: \"Ascaridomorpha\",\n    6250: \"Ascarididae\",\n    6251: \"Ascaris\",\n    6252: \"Ascaris lumbricoides\",\n    6253: \"Ascaris suum\",\n    6254: \"Parascaris\",\n    6255: \"Parascaris sp.\",\n    6256: \"Parascaris equorum\",\n    6257: \"Parascaris univalens\",\n    6258: \"Baylisascaris\",\n    6259: \"Baylisascaris procyonis\",\n    6260: \"Baylisascaris transfuga\",\n    6261: \"Heterocheilus\",\n    6262: \"Heterocheilus tunicatus\",\n    6264: \"Toxocara\",\n    6265: \"Toxocara canis\",\n    6266: \"Toxocara cati\",\n    6267: \"Anisakidae\",\n    6268: \"Anisakis\",\n    6269: \"Anisakis simplex\",\n    6270: \"Pseudoterranova\",\n    6271: \"Pseudoterranova decipiens\",\n    6272: \"Terranova\",\n    6273: \"Terranova caballeroi\",\n    6274: \"Spirurina\",\n    6276: \"Acanthocheilonema\",\n    6277: \"Acanthocheilonema viteae\",\n    6278: \"Brugia\",\n    6279: \"Brugia malayi\",\n    6280: \"Brugia pahangi\",\n    6281: \"Onchocerca\",\n    6282: \"Onchocerca volvulus\",\n    6283: \"Onchocerca gutturosa\",\n    6284: \"Onchocerca gibsoni\",\n    6285: \"Onchocerca microfilariae\",\n    6286: \"Dirofilaria\",\n    6287: \"Dirofilaria immitis\",\n    6288: \"Haemonchus\",\n    6289: \"Haemonchus contortus\",\n    6290: \"Haemonchus placei\",\n    6291: \"Haemonchus similis\",\n    6292: \"Wuchereria\",\n    6293: \"Wuchereria bancrofti\",\n    6295: \"Filarioidea\",\n    6296: \"Onchocercidae\",\n    6298: \"Litomosoides\",\n    6299: \"Litomosoides carinii\",\n    6300: \"Tylenchina\",\n    6301: \"Heteroderidae\",\n    6303: \"Meloidogyne javanica\",\n    6304: \"Meloidogyne arenaria\",\n    6305: \"Meloidogyne hapla\",\n    6306: \"Meloidogyne incognita\",\n    6308: \"Strongylida\",\n    6310: \"Metastrongyloidea\",\n    6312: \"Angiostrongylus\",\n    6313: \"Angiostrongylus cantonensis\",\n    6314: \"Trichostrongyloidea\",\n    6315: \"Trichostrongylidae\",\n    6316: \"Ostertagia\",\n    6317: \"Ostertagia ostertagi\",\n    6318: \"Trichostrongylus\",\n    6319: \"Trichostrongylus colubriformis\",\n    6324: \"Bursaphelenchus\",\n    6325: \"Bursaphelenchus mucronatus\",\n    6326: \"Bursaphelenchus xylophilus\",\n    6329: \"Trichinellida\",\n    6332: \"Trichinellidae\",\n    6333: \"Trichinella\",\n    6334: \"Trichinella spiralis\",\n    6335: \"Trichinella nativa\",\n    6336: \"Trichinella nelsoni\",\n    6337: \"Trichinella pseudospiralis\",\n    6338: \"Heligmosomoides\",\n    6339: \"Heligmosomoides polygyrus\",\n    6340: \"Annelida\",\n    6341: \"Polychaeta\",\n    6342: \"Capitellida\",\n    6343: \"Arenicola\",\n    6344: \"Arenicola marina\",\n    6346: \"Owenia\",\n    6347: \"Owenia fusiformis\",\n    6348: \"Phyllodocida\",\n    6349: \"Glycera\",\n    6350: \"Glycera dibranchiata\",\n    6351: \"Nereis\",\n    6354: \"Perinereis\",\n    6355: \"Perinereis vancaurica\",\n    6356: \"Perinereis brevicirris\",\n    6357: \"Perinereis vancaurica tetradentata\",\n    6358: \"Platynereis\",\n    6359: \"Platynereis dumerilii\",\n    6360: \"Tylorrhynchus\",\n    6361: \"Tylorrhynchus heterochaetus\",\n    6362: \"Sabellida\",\n    6363: \"Eudistylia\",\n    6364: \"Eudistylia vancouveri\",\n    6366: \"Sabellidae\",\n    6367: \"Sabellastarte\",\n    6368: \"Sabellastarte japonica\",\n    6373: \"Terebellida\",\n    6374: \"Ampharetidae\",\n    6375: \"Alvinella\",\n    6376: \"Alvinella pompejana\",\n    6378: \"Chaetopteridae\",\n    6379: \"Chaetopterus\",\n    6380: \"Chaetopterus sp. 1 Woods Hole MA\",\n    6381: \"Oligochaeta\",\n    6382: \"Haplotaxida\",\n    6383: \"Tubificina\",\n    6385: \"Tubifex\",\n    6386: \"Tubifex tubifex\",\n    6388: \"Enchytraeidae\",\n    6389: \"Enchytraeus\",\n    6390: \"Enchytraeus albidus\",\n    6391: \"Lumbricina\",\n    6392: \"Lumbricidae\",\n    6393: \"Eisenia\",\n    6395: \"Eisenia bicyclis\",\n    6396: \"Eisenia fetida\",\n    6397: \"Lumbricus\",\n    6398: \"Lumbricus terrestris\",\n    6399: \"Lumbricus sp.\",\n    6400: \"Megascolecidae\",\n    6401: \"Pheretima\",\n    6404: \"Macrobdella\",\n    6405: \"Macrobdella decora\",\n    6406: \"Rhynchobdellida\",\n    6407: \"Glossiphoniidae\",\n    6408: \"Haementeria\",\n    6409: \"Haementeria ghilianii\",\n    6410: \"Haementeria officinalis\",\n    6411: \"Helobdella\",\n    6412: \"Helobdella robusta\",\n    6413: \"Helobdella triserialis\",\n    6414: \"Placobdella\",\n    6415: \"Placobdella ornata\",\n    6416: \"Hirudiniformes\",\n    6417: \"Hirudinidae\",\n    6418: \"Hirudinaria\",\n    6420: \"Hirudo\",\n    6421: \"Hirudo medicinalis\",\n    6423: \"Lamellibrachia\",\n    6424: \"Lamellibrachia sp.\",\n    6425: \"Riftia\",\n    6426: \"Riftia pachyptila\",\n    6427: \"Echiura\",\n    6428: \"Xenopneusta\",\n    6429: \"Urechidae\",\n    6430: \"Urechis\",\n    6431: \"Urechis caupo\",\n    6432: \"Urechis unicinctus\",\n    6433: \"Sipuncula\",\n    6434: \"Golfingiidae\",\n    6435: \"Themiste\",\n    6436: \"Themiste dyscritum\",\n    6438: \"Golfingia\",\n    6440: \"Sipunculidae\",\n    6441: \"Phascolopsis\",\n    6442: \"Phascolopsis gouldii\",\n    6443: \"Siphonosoma\",\n    6444: \"Siphonosoma cumanense\",\n    6445: \"Sipunculus\",\n    6446: \"Sipunculus nudus\",\n    6447: \"Mollusca\",\n    6448: \"Gastropoda\",\n    6451: \"Haliotidae\",\n    6452: \"Haliotis\",\n    6453: \"Haliotis corrugata\",\n    6454: \"Haliotis rufescens\",\n    6455: \"Haliotis cracherodii\",\n    6456: \"Haliotis fulgens\",\n    6457: \"Haliotis kamtschatkana\",\n    6458: \"Haliotis sorenseni\",\n    6459: \"Haliotis walallensis\",\n    6462: \"Patellidae\",\n    6463: \"Patella\",\n    6465: \"Patella vulgata\",\n    6466: \"Trochidae\",\n    6467: \"Tegula\",\n    6470: \"Potamididae\",\n    6471: \"Cerithidea\",\n    6472: \"Cerithidea rhizophorarum\",\n    6475: \"Ampullarioidea\",\n    6476: \"Bithyniidae\",\n    6477: \"Bithynia\",\n    6478: \"Bithynia tentaculata\",\n    6479: \"Neogastropoda\",\n    6480: \"Melongenidae\",\n    6481: \"Busycon\",\n    6483: \"Nassariidae\",\n    6484: \"Nassarius\",\n    6486: \"Fasciolariidae\",\n    6487: \"Fusinus\",\n    6488: \"Fusinus ferrugineus\",\n    6489: \"Conidae\",\n    6490: \"Conus\",\n    6491: \"Conus geographus\",\n    6492: \"Conus magus\",\n    6493: \"Conus striatus\",\n    6494: \"Conus textile\",\n    6495: \"Conus tulipa\",\n    6496: \"Euopisthobranchia\",\n    6497: \"Aplysiida\",\n    6498: \"Aplysiidae\",\n    6499: \"Aplysia\",\n    6500: \"Aplysia californica\",\n    6501: \"Aplysia kurodai\",\n    6502: \"Aplysia limacina\",\n    6503: \"Aplysia parvula\",\n    6504: \"Aplysia sp.\",\n    6506: \"Aplysia juliana\",\n    6507: \"Bursatella\",\n    6508: \"Bursatella leachii\",\n    6510: \"Dolabella\",\n    6511: \"Dolabella auricularia\",\n    6512: \"Gymnosomata\",\n    6514: \"Eudoridoidea\",\n    6515: \"Discodorididae\",\n    6521: \"Lymnaeidae\",\n    6522: \"Lymnaea\",\n    6523: \"Lymnaea stagnalis\",\n    6524: \"Planorbidae\",\n    6525: \"Biomphalaria\",\n    6526: \"Biomphalaria glabrata\",\n    6527: \"Stylommatophora\",\n    6528: \"Achatinidae\",\n    6529: \"Achatina\",\n    6530: \"Achatina fulica\",\n    6531: \"Limicolaria\",\n    6532: \"Limicolaria kambeul\",\n    6533: \"Helicidae\",\n    6534: \"Helix\",\n    6535: \"Helix aspersa\",\n    6536: \"Helix pomatia\",\n    6540: \"Arionidae\",\n    6542: \"Arion\",\n    6543: \"Arion rufus\",\n    6544: \"Bivalvia\",\n    6545: \"Pteriomorphia\",\n    6546: \"Mytiloida\",\n    6547: \"Mytilidae\",\n    6548: \"Mytilus\",\n    6549: \"Mytilus californianus\",\n    6550: \"Mytilus edulis\",\n    6551: \"Mytilus trossulus\",\n    6552: \"Arcoida\",\n    6553: \"Arcidae\",\n    6554: \"Anadara\",\n    6556: \"Anadara trapezia\",\n    6557: \"Barbatia\",\n    6558: \"Barbatia reeveana\",\n    6559: \"Barbatia virescens\",\n    6560: \"Scapharca\",\n    6561: \"Scapharca inaequivalvis\",\n    6562: \"Ostreoida\",\n    6563: \"Ostreidae\",\n    6564: \"Crassostrea\",\n    6565: \"Crassostrea virginica\",\n    6566: \"Pectinidae\",\n    6569: \"Chlamys\",\n    6570: \"Chlamys nipponensis\",\n    6571: \"Chlamys nipponensis akazara\",\n    6572: \"Patinopecten\",\n    6573: \"Mizuhopecten yessoensis\",\n    6574: \"Patinopecten sp.\",\n    6576: \"Placopecten\",\n    6577: \"Placopecten magellanicus\",\n    6578: \"Pecten\",\n    6579: \"Pecten maximus\",\n    6580: \"Veneroida\",\n    6581: \"Mactridae\",\n    6582: \"Spisula\",\n    6584: \"Spisula solidissima\",\n    6585: \"Solenidae\",\n    6586: \"Ensis\",\n    6587: \"Ensis minor\",\n    6588: \"Vesicomyidae\",\n    6589: \"Calyptogena\",\n    6591: \"Calyptogena magnifica\",\n    6592: \"Veneridae\",\n    6593: \"Macrocallista\",\n    6594: \"Macrocallista nimbosa\",\n    6595: \"Mercenaria\",\n    6596: \"Mercenaria mercenaria\",\n    6598: \"unidentified clam\",\n    6599: \"Heterodonta\",\n    6601: \"Myoidea\",\n    6602: \"Myidae\",\n    6603: \"Mya\",\n    6604: \"Mya arenaria\",\n    6605: \"Cephalopoda\",\n    6606: \"Coleoidea\",\n    6608: \"Sepiidae\",\n    6609: \"Sepia\",\n    6610: \"Sepia officinalis\",\n    6612: \"Euprymna\",\n    6613: \"Euprymna scolopes\",\n    6615: \"Loliginidae\",\n    6616: \"Loligo\",\n    6618: \"Loligo forbesii\",\n    6622: \"Loligo vulgaris\",\n    6623: \"Enoploteuthidae\",\n    6624: \"Watasenia\",\n    6625: \"Watasenia scintillans\",\n    6626: \"Ommastrephidae\",\n    6627: \"Illex\",\n    6628: \"Illex argentinus\",\n    6629: \"Illex illecebrosus\",\n    6630: \"Nototodarus\",\n    6631: \"Nototodarus gouldi\",\n    6632: \"Ommastrephes\",\n    6636: \"Todarodes\",\n    6637: \"Todarodes pacificus\",\n    6638: \"Octopoda\",\n    6639: \"Eledone\",\n    6641: \"Eledone moschata\",\n    6643: \"Octopus\",\n    6645: \"Octopus vulgaris\",\n    6646: \"Incirrata\",\n    6647: \"Octopodidae\",\n    6650: \"Polyplacophora\",\n    6651: \"Neoloricata\",\n    6652: \"Chitonida\",\n    6653: \"Acanthochitonidae\",\n    6654: \"Cryptochiton\",\n    6655: \"Cryptochiton stelleri\",\n    6656: \"Arthropoda\",\n    6657: \"Crustacea\",\n    6658: \"Branchiopoda\",\n    6659: \"Anostraca\",\n    6660: \"Artemia\",\n    6661: \"Artemia franciscana\",\n    6662: \"Artemia sp.\",\n    6663: \"Artemia parthenogenetica\",\n    6665: \"Cladocera\",\n    6668: \"Daphnia\",\n    6669: \"Daphnia pulex\",\n    6670: \"Ostracoda\",\n    6671: \"Myodocopa\",\n    6672: \"Cypridinidae\",\n    6673: \"Vargula\",\n    6674: \"Vargula hilgendorfii\",\n    6675: \"Cirripedia\",\n    6676: \"Thoracica\",\n    6677: \"Balanus\",\n    6678: \"Balanus nubilus\",\n    6679: \"Megabalanus\",\n    6680: \"Megabalanus rosa\",\n    6681: \"Malacostraca\",\n    6682: \"Eucarida\",\n    6683: \"Decapoda\",\n    6684: \"Dendrobranchiata\",\n    6685: \"Penaeidae\",\n    6687: \"Penaeus monodon\",\n    6688: \"Penaeus sp.\",\n    6689: \"Penaeus vannamei\",\n    6690: \"Penaeus aztecus\",\n    6692: \"Pleocyemata\",\n    6693: \"lobster\",\n    6694: \"Caridea\",\n    6695: \"Palaemonidae\",\n    6696: \"Macrobrachium\",\n    6697: \"Macrobrachium malcolmsonii\",\n    6700: \"Palaemon kadiakensis\",\n    6701: \"Pandalidae\",\n    6702: \"Pandalus\",\n    6703: \"Pandalus borealis\",\n    6704: \"Nephropidae\",\n    6705: \"Homarus\",\n    6706: \"Homarus americanus\",\n    6707: \"Homarus gammarus\",\n    6709: \"Procarididae\",\n    6710: \"Procaris\",\n    6711: \"Procaris ascensionis\",\n    6712: \"Astacidea\",\n    6713: \"Astacidae\",\n    6714: \"Astacus\",\n    6715: \"Astacus astacus\",\n    6717: \"Astacus leptodactylus\",\n    6719: \"Pacifastacus\",\n    6720: \"Pacifastacus leniusculus\",\n    6722: \"Cherax\",\n    6723: \"Cherax destructor\",\n    6724: \"Astacoidea\",\n    6725: \"Cambaridae\",\n    6726: \"Procambarus\",\n    6727: \"Procambarus leonensis\",\n    6728: \"Procambarus clarkii\",\n    6729: \"Procambarus bouvieri\",\n    6730: \"Achelata\",\n    6731: \"Palinuridae\",\n    6732: \"Palinurus\",\n    6733: \"Palinurus vulgaris\",\n    6734: \"Panulirus\",\n    6735: \"Panulirus interruptus\",\n    6736: \"Panulirus japonicus\",\n    6737: \"Panulirus argus\",\n    6738: \"Anomura\",\n    6739: \"Lithodidae\",\n    6740: \"Paralithodes\",\n    6741: \"Paralithodes camtschaticus\",\n    6742: \"Oedignathus\",\n    6743: \"Oedignathus inermis\",\n    6744: \"Paguroidea\",\n    6745: \"Paguridae\",\n    6746: \"Pagurus\",\n    6747: \"Pagurus pollicaris\",\n    6749: \"Diogenidae\",\n    6750: \"Clibanarius\",\n    6751: \"Clibanarius vittatus\",\n    6752: \"Brachyura\",\n    6753: \"Cancridae\",\n    6754: \"Cancer\",\n    6755: \"Cancer pagurus\",\n    6756: \"Cancer irroratus\",\n    6757: \"Portunidae\",\n    6758: \"Carcinus\",\n    6759: \"Carcinus maenas\",\n    6760: \"Scylla\",\n    6761: \"Scylla serrata\",\n    6762: \"Callinectes\",\n    6763: \"Callinectes sapidus\",\n    6764: \"Gecarcinidae\",\n    6765: \"Cardisoma\",\n    6766: \"Cardisoma carnifex\",\n    6767: \"Cardisoma guanhumi\",\n    6768: \"Gecarcinus\",\n    6769: \"Gecarcinus lateralis\",\n    6770: \"Ocypodidae\",\n    6771: \"Leptuca\",\n    6772: \"Leptuca pugilator\",\n    6774: \"Portunoidea\",\n    6775: \"Geryonidae\",\n    6776: \"Geryon\",\n    6778: \"Xanthoidea\",\n    6779: \"Xanthidae\",\n    6780: \"Menippe\",\n    6781: \"Menippe mercenaria\",\n    6782: \"Dromiacea\",\n    6783: \"Dromioidea\",\n    6784: \"Dromiidae\",\n    6785: \"Dromidia\",\n    6786: \"Dromidia antillensis\",\n    6787: \"Hypoconcha\",\n    6788: \"Hypoconcha arcuata\",\n    6789: \"Raninoidea\",\n    6790: \"Raninidae\",\n    6791: \"Ranilia\",\n    6792: \"Ranilia muricata\",\n    6793: \"Raninoides\",\n    6794: \"Raninoides louisianensis\",\n    6796: \"Leucosioidea\",\n    6797: \"Calappidae\",\n    6798: \"Hepatus\",\n    6799: \"Hepatus epheliticus\",\n    6800: \"Leucosiidae\",\n    6801: \"Iliacantha\",\n    6802: \"Iliacantha subglobosa\",\n    6804: \"Majoidea\",\n    6805: \"Majidae\",\n    6806: \"Libinia\",\n    6807: \"Libinia emarginata\",\n    6808: \"Parthenopoidea\",\n    6809: \"Parthenopidae\",\n    6810: \"Parthenope\",\n    6811: \"Parthenope serrata\",\n    6812: \"Stenopodidea\",\n    6813: \"Stenopodidae\",\n    6814: \"Stenopus\",\n    6815: \"Stenopus hispidus\",\n    6816: \"Euphausiacea\",\n    6817: \"Euphausiidae\",\n    6818: \"Euphausia\",\n    6819: \"Euphausia superba\",\n    6820: \"Peracarida\",\n    6821: \"Amphipoda\",\n    6825: \"Parascelidae\",\n    6826: \"Euscelis\",\n    6827: \"Euscelis plebejus\",\n    6828: \"Nephrops\",\n    6829: \"Nephrops norvegicus\",\n    6830: \"Copepoda\",\n    6831: \"Tigriopus\",\n    6832: \"Tigriopus californicus\",\n    6833: \"Calanoida\",\n    6835: \"Calanidae\",\n    6836: \"Calanus\",\n    6837: \"Calanus finmarchicus\",\n    6838: \"Branchiura\",\n    6839: \"Arguloida\",\n    6840: \"Argulidae\",\n    6842: \"Argulus nobilis\",\n    6843: \"Chelicerata\",\n    6844: \"Merostomata\",\n    6845: \"Xiphosura\",\n    6846: \"Limulidae\",\n    6847: \"Carcinoscorpius\",\n    6848: \"Carcinoscorpius rotundicauda\",\n    6849: \"Limulus\",\n    6850: \"Limulus polyphemus\",\n    6851: \"Tachypleus\",\n    6852: \"Tachypleus gigas\",\n    6853: \"Tachypleus tridentatus\",\n    6854: \"Arachnida\",\n    6855: \"Scorpiones\",\n    6856: \"Buthidae\",\n    6857: \"Androctonus\",\n    6858: \"Androctonus australis\",\n    6859: \"Androctonus mauritanicus\",\n    6860: \"Androctonus mauritanicus mauritanicus\",\n    6862: \"Hottentotta\",\n    6863: \"Hottentotta judaicus\",\n    6865: \"Buthus\",\n    6868: \"Buthus occitanus\",\n    6869: \"Buthus occitanus mardochei\",\n    6870: \"Buthus occitanus occitanus\",\n    6871: \"Buthus occitanus tunetanus\",\n    6875: \"Centruroides\",\n    6876: \"Centruroides limpidus\",\n    6878: \"Centruroides noxius\",\n    6879: \"Centruroides exilicauda\",\n    6880: \"Centruroides suffusus\",\n    6881: \"Centruroides suffusus suffusus\",\n    6882: \"Leiurus\",\n    6883: \"Leiurus quinquestriatus\",\n    6884: \"Leiurus quinquestriatus hebraeus\",\n    6885: \"Leiurus quinquestriatus quinquestriatus\",\n    6886: \"Tityus\",\n    6887: \"Tityus serrulatus\",\n    6888: \"Scorpionidae\",\n    6889: \"Urodacus\",\n    6890: \"Urodacus hoplurus\",\n    6891: \"Orthochirus\",\n    6892: \"Orthochirus scrobiculosus\",\n    6893: \"Araneae\",\n    6894: \"Mygalomorphae\",\n    6895: \"Theraphosidae\",\n    6896: \"Aphonopelma\",\n    6899: \"Aphonopelma chalcodes\",\n    6901: \"Hexathelidae\",\n    6902: \"Atrax\",\n    6903: \"Atrax robustus\",\n    6904: \"Hadronyche versuta\",\n    6905: \"Araneomorphae\",\n    6906: \"Agelenidae\",\n    6907: \"Agelenopsis\",\n    6908: \"Agelenopsis aperta\",\n    6909: \"Hololena\",\n    6910: \"Hololena curta\",\n    6913: \"Araneidae\",\n    6914: \"Nephila\",\n    6916: \"Ctenidae\",\n    6917: \"Phoneutria\",\n    6918: \"Phoneutria nigriventer\",\n    6919: \"Sicariidae\",\n    6920: \"Loxosceles\",\n    6921: \"Loxosceles reclusa\",\n    6923: \"Latrodectus\",\n    6924: \"Latrodectus mactans\",\n    6925: \"Latrodectus tredecimguttatus\",\n    6927: \"Cupiennius\",\n    6928: \"Cupiennius salei\",\n    6930: \"Pholcidae\",\n    6931: \"Pholcus\",\n    6932: \"Pholcus phalangioides\",\n    6933: \"Acari\",\n    6934: \"Parasitiformes\",\n    6935: \"Ixodida\",\n    6936: \"Argasidae\",\n    6937: \"Ornithodoros\",\n    6938: \"Ornithodoros moubata\",\n    6939: \"Ixodidae\",\n    6940: \"Boophilus\",\n    6941: \"Rhipicephalus microplus\",\n    6942: \"Amblyomma\",\n    6943: \"Amblyomma americanum\",\n    6944: \"Ixodes\",\n    6945: \"Ixodes scapularis\",\n    6946: \"Acariformes\",\n    6947: \"Prostigmata\",\n    6948: \"Pyemotidae\",\n    6949: \"Pyemotes\",\n    6950: \"Pyemotes tritici\",\n    6951: \"Astigmata\",\n    6952: \"Pyroglyphidae\",\n    6953: \"Dermatophagoides\",\n    6954: \"Dermatophagoides farinae\",\n    6955: \"Dermatophagoides microceras\",\n    6956: \"Dermatophagoides pteronyssinus\",\n    6957: \"Euroglyphus\",\n    6958: \"Euroglyphus maynei\",\n    6960: \"Hexapoda\",\n    6961: \"Odonata\",\n    6962: \"Anisoptera\",\n    6964: \"Libellulidae\",\n    6965: \"Libellula\",\n    6966: \"Libellula auripennis\",\n    6967: \"Libellula pulchella\",\n    6968: \"Sympetrum\",\n    6969: \"Sympetrum striolatum\",\n    6970: \"Dictyoptera\",\n    6972: \"Blattella\",\n    6973: \"Blattella germanica\",\n    6974: \"Blattidae\",\n    6975: \"Blatta\",\n    6976: \"Blatta orientalis\",\n    6977: \"Periplaneta\",\n    6978: \"Periplaneta americana\",\n    6979: \"Blaberidae\",\n    6980: \"Blaberus\",\n    6981: \"Blaberus discoidalis\",\n    6982: \"Blaberus craniifer\",\n    6983: \"Diploptera\",\n    6984: \"Diploptera punctata\",\n    6989: \"Nauphoeta\",\n    6990: \"Nauphoeta cinerea\",\n    6993: \"Orthoptera\",\n    6994: \"Ensifera\",\n    6995: \"Gryllidae\",\n    6996: \"Acheta\",\n    6997: \"Acheta domesticus\",\n    6998: \"Gryllus\",\n    6999: \"Gryllus bimaculatus\",\n    7000: \"Gryllus firmus\",\n    7001: \"Caelifera\",\n    7002: \"Acrididae\",\n    7003: \"Locusta\",\n    7004: \"Locusta migratoria\",\n    7005: \"Locusta migratoria migratorioides\",\n    7006: \"Romalea\",\n    7007: \"Romalea microptera\",\n    7008: \"Schistocerca\",\n    7009: \"Schistocerca americana\",\n    7010: \"Schistocerca gregaria\",\n    7011: \"Schistocerca nitens\",\n    7013: \"Caledia\",\n    7014: \"Caledia captiva\",\n    7018: \"Stauroderus\",\n    7019: \"Stauroderus scalaris\",\n    7020: \"Phasmatodea\",\n    7021: \"Carausius\",\n    7022: \"Carausius morosus\",\n    7023: \"Extatosoma\",\n    7024: \"Extatosoma tiaratum\",\n    7028: \"Acyrthosiphon\",\n    7029: \"Acyrthosiphon pisum\",\n    7030: \"Acyrthosiphon magnoliae\",\n    7033: \"Cicadidae\",\n    7034: \"Tibicen\",\n    7035: \"Tibicen sp. JLJ-1991\",\n    7036: \"Aleyrodidae\",\n    7037: \"Bemisia\",\n    7038: \"Bemisia tabaci\",\n    7039: \"Siphoninus\",\n    7040: \"Siphoninus phillyreae\",\n    7041: \"Coleoptera\",\n    7042: \"Curculionidae\",\n    7043: \"Anthonomus\",\n    7044: \"Anthonomus grandis\",\n    7045: \"Sitophilus\",\n    7046: \"Sitophilus granarius\",\n    7047: \"Sitophilus zeamais\",\n    7048: \"Sitophilus oryzae\",\n    7049: \"Lampyridae\",\n    7050: \"Luciola\",\n    7051: \"Luciola cruciata\",\n    7052: \"Aquatica lateralis\",\n    7053: \"Photinus\",\n    7054: \"Photinus pyralis\",\n    7055: \"Scarabaeidae\",\n    7056: \"Cetoniinae\",\n    7057: \"Pachnoda\",\n    7058: \"Pachnoda marginata\",\n    7059: \"Melolonthinae\",\n    7060: \"Melolontha\",\n    7061: \"Melolontha melolontha\",\n    7062: \"Rutelinae\",\n    7063: \"Popillia\",\n    7064: \"Popillia japonica\",\n    7065: \"Tenebrionidae\",\n    7066: \"Tenebrio\",\n    7067: \"Tenebrio molitor\",\n    7069: \"Tribolium\",\n    7070: \"Tribolium castaneum\",\n    7071: \"Tribolium confusum\",\n    7072: \"Tribolium freemani\",\n    7073: \"Zophobas\",\n    7074: \"Zophobas atratus\",\n    7076: \"Palorus\",\n    7077: \"Palorus ratzeburgii\",\n    7080: \"Coccinellidae\",\n    7081: \"Coccinellinae\",\n    7083: \"Adalia\",\n    7084: \"Adalia bipunctata\",\n    7085: \"Polyphaga aegyptiaca\",\n    7086: \"Geotrupes\",\n    7088: \"Lepidoptera\",\n    7089: \"Bombycidae\",\n    7090: \"Bombyx\",\n    7091: \"Bombyx mori\",\n    7092: \"Bombyx mandarina\",\n    7096: \"Lasiocampidae\",\n    7097: \"Malacosoma\",\n    7098: \"Malacosoma neustria\",\n    7099: \"Malacosoma americanum\",\n    7100: \"Noctuidae\",\n    7101: \"Heliothis\",\n    7102: \"Heliothis virescens\",\n    7106: \"Spodoptera\",\n    7107: \"Spodoptera exigua\",\n    7108: \"Spodoptera frugiperda\",\n    7109: \"Spodoptera littoralis\",\n    7110: \"Trichoplusia\",\n    7111: \"Trichoplusia ni\",\n    7112: \"Helicoverpa\",\n    7113: \"Helicoverpa zea\",\n    7114: \"Pieridae\",\n    7115: \"Pieris\",\n    7116: \"Pieris brassicae\",\n    7117: \"Saturniidae\",\n    7118: \"Antheraea\",\n    7119: \"Antheraea pernyi\",\n    7120: \"Antheraea polyphemus\",\n    7121: \"Antheraea yamamai\",\n    7122: \"Hyalophora\",\n    7123: \"Hyalophora cecropia\",\n    7124: \"Lonomia\",\n    7125: \"Lonomia achelous\",\n    7126: \"Samia\",\n    7127: \"Samia cynthia\",\n    7128: \"Sphingidae\",\n    7129: \"Manduca\",\n    7130: \"Manduca sexta\",\n    7135: \"Pyralidae\",\n    7136: \"Galleria\",\n    7137: \"Galleria mellonella\",\n    7139: \"Tortricidae\",\n    7140: \"Choristoneura\",\n    7141: \"Choristoneura fumiferana\",\n    7143: \"Papilionidae\",\n    7145: \"Papilio\",\n    7146: \"Papilio polyxenes\",\n    7147: \"Diptera\",\n    7148: \"Nematocera\",\n    7149: \"Chironomidae\",\n    7150: \"Chironomus\",\n    7151: \"Chironomus pallidivittatus\",\n    7152: \"Chironomus sp.\",\n    7153: \"Chironomus tentans\",\n    7154: \"Chironomus thummi\",\n    7155: \"Chironomus thummi thummi\",\n    7156: \"Chironomus piger\",\n    7157: \"Culicidae\",\n    7158: \"Aedes\",\n    7159: \"Aedes aegypti\",\n    7160: \"Aedes albopictus\",\n    7161: \"Aedes simpsoni\",\n    7162: \"Ochlerotatus triseriatus\",\n    7163: \"Aedes vexans\",\n    7164: \"Anopheles\",\n    7165: \"Anopheles gambiae\",\n    7166: \"Anopheles quadrimaculatus\",\n    7167: \"Anopheles albimanus\",\n    7168: \"Anopheles dirus\",\n    7170: \"Anopheles freeborni\",\n    7171: \"Anopheles hermsi\",\n    7172: \"Anopheles occidentalis\",\n    7173: \"Anopheles arabiensis\",\n    7174: \"Culex\",\n    7175: \"Culex pipiens\",\n    7176: \"Culex quinquefasciatus\",\n    7177: \"Culex tarsalis\",\n    7178: \"Culex tritaeniorhynchus\",\n    7180: \"Haemagogus\",\n    7181: \"Haemagogus mesodentatus\",\n    7182: \"Psorophora\",\n    7183: \"Psorophora ferox\",\n    7184: \"Sciaridae\",\n    7185: \"Rhynchosciara\",\n    7186: \"Rhynchosciara americana\",\n    7190: \"Simuliidae\",\n    7191: \"Simulium\",\n    7192: \"Simulium vittatum\",\n    7193: \"Simulium decorum\",\n    7194: \"Simulium venustum\",\n    7197: \"Psychodidae\",\n    7198: \"Phlebotominae\",\n    7199: \"Lutzomyia\",\n    7200: \"Lutzomyia longipalpis\",\n    7201: \"Psychoda\",\n    7202: \"Psychoda cinerea\",\n    7203: \"Brachycera\",\n    7205: \"Tabanidae\",\n    7206: \"Tabanus\",\n    7207: \"Tabanus atratus\",\n    7208: \"Loa\",\n    7209: \"Loa loa\",\n    7211: \"Tephritidae\",\n    7212: \"Ceratitis\",\n    7213: \"Ceratitis capitata\",\n    7214: \"Drosophilidae\",\n    7215: \"Drosophila\",\n    7216: \"Drosophila ambigua\",\n    7217: \"Drosophila ananassae\",\n    7218: \"Drosophila bifasciata\",\n    7219: \"Drosophila differens\",\n    7220: \"Drosophila erecta\",\n    7221: \"Drosophila funebris\",\n    7222: \"Drosophila grimshawi\",\n    7224: \"Drosophila hydei\",\n    7225: \"Scaptodrosophila lebanonensis\",\n    7226: \"Drosophila mauritiana\",\n    7227: \"Drosophila melanogaster\",\n    7228: \"Drosophila mettleri\",\n    7229: \"Drosophila miranda\",\n    7230: \"Drosophila mojavensis\",\n    7231: \"Drosophila mulleri\",\n    7232: \"Drosophila navojoa\",\n    7233: \"Drosophila orena\",\n    7234: \"Drosophila persimilis\",\n    7235: \"Drosophila picticornis\",\n    7236: \"Drosophila planitibia\",\n    7237: \"Drosophila pseudoobscura\",\n    7238: \"Drosophila sechellia\",\n    7239: \"Drosophila subsilvestris\",\n    7240: \"Drosophila simulans\",\n    7241: \"Drosophila subobscura\",\n    7242: \"Drosophila sp. (in: Insecta)\",\n    7243: \"Drosophila teissieri\",\n    7244: \"Drosophila virilis\",\n    7245: \"Drosophila yakuba\",\n    7246: \"Drosophila affinis\",\n    7247: \"Drosophila algonquin\",\n    7248: \"Drosophila athabasca\",\n    7249: \"Drosophila azteca\",\n    7250: \"Drosophila immigrans\",\n    7251: \"Drosophila lowei\",\n    7252: \"Drosophila melanica\",\n    7253: \"Drosophila mercatorum\",\n    7254: \"Drosophila narragansett\",\n    7255: \"Hirtodrosophila pictiventris\",\n    7256: \"Drosophila pinicola\",\n    7257: \"Drosophila robusta\",\n    7258: \"Drosophila stonei\",\n    7259: \"Drosophila tolteca\",\n    7260: \"Drosophila willistoni\",\n    7261: \"Drosophila adiastola\",\n    7262: \"Drosophila affinidisjuncta\",\n    7263: \"Drosophila arizonae\",\n    7264: \"Drosophila buzzatii\",\n    7266: \"Drosophila guanche\",\n    7267: \"Drosophila gymnobasis\",\n    7268: \"Drosophila mayaguana\",\n    7269: \"Drosophila mediostriata\",\n    7270: \"Drosophila mimica\",\n    7271: \"Drosophila nebulosa\",\n    7272: \"Drosophila nigra\",\n    7273: \"Drosophila saltans\",\n    7274: \"Drosophila serrata\",\n    7275: \"Drosophila silvarentis\",\n    7277: \"Drosophila wheeleri\",\n    7278: \"Drosophila bromeliae\",\n    7279: \"Drosophila falleni\",\n    7280: \"Drosophila kitumensis\",\n    7281: \"Drosophila microlabis\",\n    7282: \"Drosophila obscura\",\n    7283: \"Drosophila phalerata\",\n    7284: \"Drosophila tristis\",\n    7287: \"Drosophila cilifemorata\",\n    7289: \"Drosophila sproati\",\n    7290: \"Drosophila stigma\",\n    7291: \"Drosophila albomicans\",\n    7292: \"Chymomyza\",\n    7293: \"Chymomyza amoena\",\n    7294: \"Liodrosophila\",\n    7295: \"Liodrosophila aerea\",\n    7296: \"Zaprionus\",\n    7297: \"Zaprionus tuberculatus\",\n    7298: \"Scaptomyza\",\n    7299: \"Scaptomyza albovittata\",\n    7300: \"Scaptomyza pallida\",\n    7301: \"Scaptomyza exigua\",\n    7324: \"Hirtodrosophila\",\n    7329: \"Leucophenga\",\n    7331: \"Lordiphosa\",\n    7337: \"Mulgravea\",\n    7338: \"Mycodrosophila\",\n    7340: \"Neotanygastrella\",\n    7343: \"Paraliodrosophila\",\n    7344: \"Paramycodrosophila\",\n    7346: \"Phorticella\",\n    7353: \"Samoaia\",\n    7354: \"Scaptodrosophila\",\n    7356: \"Sphaerogastrella\",\n    7359: \"Styloptera\",\n    7361: \"Titanochaeta\",\n    7366: \"Muscidae\",\n    7367: \"Haematobia\",\n    7368: \"Haematobia irritans\",\n    7369: \"Musca\",\n    7370: \"Musca domestica\",\n    7371: \"Calliphoridae\",\n    7372: \"Calliphora\",\n    7373: \"Calliphora vicina\",\n    7374: \"Lucilia\",\n    7375: \"Lucilia cuprina\",\n    7376: \"Lucilia illustris\",\n    7377: \"Phormia\",\n    7380: \"Phormia regina\",\n    7381: \"Sarcophagidae\",\n    7382: \"Boettcherisca\",\n    7384: \"Sarcophaga\",\n    7385: \"Sarcophaga bullata\",\n    7386: \"Sarcophaga peregrina\",\n    7387: \"Oestridae\",\n    7388: \"Hypoderma\",\n    7389: \"Hypoderma lineatum\",\n    7392: \"Glossinidae\",\n    7393: \"Glossina\",\n    7394: \"Glossina morsitans\",\n    7395: \"Glossina austeni\",\n    7396: \"Glossina fuscipes\",\n    7397: \"Glossina palpalis\",\n    7398: \"Glossina pallidipes\",\n    7399: \"Hymenoptera\",\n    7400: \"Apocrita\",\n    7401: \"Ichneumonoidea\",\n    7402: \"Braconidae\",\n    7403: \"Apanteles\",\n    7405: \"Chelonus\",\n    7406: \"Chelonus sp.\",\n    7407: \"Chelonus sp. 'Jones et al.'\",\n    7408: \"Ichneumonidae\",\n    7411: \"Exeristes\",\n    7412: \"Exeristes roborator\",\n    7415: \"Campoletis\",\n    7416: \"Campoletis sonorensis\",\n    7419: \"Diadromus\",\n    7420: \"Diadromus pulchellus\",\n    7421: \"Diadromus collaris\",\n    7422: \"Chalcidoidea\",\n    7423: \"Pteromalidae\",\n    7424: \"Nasonia\",\n    7425: \"Nasonia vitripennis\",\n    7426: \"Nasonia giraulti\",\n    7427: \"Nasonia longicornis\",\n    7428: \"Muscidifurax\",\n    7429: \"Muscidifurax uniraptor\",\n    7430: \"Eupelmidae\",\n    7431: \"Eupelmus\",\n    7432: \"Eupelmus vuilleti\",\n    7433: \"Eupelmus orientalis\",\n    7434: \"Aculeata\",\n    7435: \"Scoliidae\",\n    7436: \"Megascolia\",\n    7437: \"Megascolia flavifrons\",\n    7438: \"Vespidae\",\n    7439: \"Vespinae\",\n    7440: \"Dolichovespula\",\n    7441: \"Dolichovespula maculata\",\n    7442: \"Dolichovespula arenaria\",\n    7443: \"Vespa\",\n    7444: \"Vespa basalis\",\n    7445: \"Vespa crabro\",\n    7446: \"Vespa mandarinia\",\n    7447: \"Vespa orientalis\",\n    7448: \"Vespa simillima xanthoptera\",\n    7449: \"Vespa analis\",\n    7450: \"Vespa tropica\",\n    7451: \"Vespula\",\n    7452: \"Vespula lewisii\",\n    7453: \"Vespula maculifrons\",\n    7454: \"Vespula vulgaris\",\n    7455: \"Polistinae\",\n    7456: \"Polistes\",\n    7458: \"Apidae\",\n    7459: \"Apis\",\n    7460: \"Apis mellifera\",\n    7461: \"Apis cerana\",\n    7462: \"Apis dorsata\",\n    7463: \"Apis florea\",\n    7464: \"Apis andreniformis\",\n    7468: \"Apis koschevnikovi\",\n    7469: \"Apis mellifera ligustica\",\n    7474: \"Anthophorinae\",\n    7476: \"Xylocopa\",\n    7477: \"Xylocopa sp.\",\n    7479: \"Formicinae\",\n    7482: \"Lasius\",\n    7483: \"Lasius sp. HL-1992\",\n    7485: \"Sphecidae\",\n    7486: \"Sphecius\",\n    7487: \"Sphecius speciosus\",\n    7489: \"Trichogrammatidae\",\n    7490: \"Trichogramma\",\n    7491: \"Trichogramma cordubensis\",\n    7492: \"Trichogramma deion\",\n    7493: \"Trichogramma pretiosum\",\n    7494: \"Icaria\",\n    7495: \"Icaria sp.\",\n    7496: \"Pterygota\",\n    7501: \"Termopsidae\",\n    7502: \"Zootermopsis\",\n    7503: \"Zootermopsis angusticollis\",\n    7504: \"Mantodea\",\n    7505: \"Mantidae\",\n    7506: \"Mantis\",\n    7507: \"Mantis religiosa\",\n    7509: \"Siphonaptera\",\n    7511: \"Pulicidae\",\n    7514: \"Ctenocephalides\",\n    7515: \"Ctenocephalides felis\",\n    7516: \"Neuroptera\",\n    7520: \"Chrysopidae\",\n    7521: \"Chrysoperla\",\n    7522: \"Chrysoperla plorabunda\",\n    7524: \"Hemiptera\",\n    7527: \"Urostylididae\",\n    7529: \"Urostyla sp. ABT-1992\",\n    7533: \"Lygaeidae\",\n    7535: \"Oncopeltus\",\n    7536: \"Oncopeltus fasciatus\",\n    7538: \"Leptinotarsa\",\n    7539: \"Leptinotarsa decemlineata\",\n    7540: \"Chilopoda\",\n    7543: \"Cryptopidae\",\n    7544: \"Cryptops\",\n    7548: \"Lithobiidae\",\n    7551: \"Lithobius\",\n    7552: \"Lithobius forficatus\",\n    7553: \"Diplopoda\",\n    7558: \"Spirobolidae\",\n    7559: \"Spirobolus\",\n    7560: \"Spirobolus marginatus\",\n    7561: \"Pentastomida\",\n    7563: \"Porocephalida\",\n    7565: \"Porocephalidae\",\n    7566: \"Porocephalus\",\n    7567: \"Porocephalus crotali\",\n    7568: \"Brachiopoda\",\n    7570: \"Lingulida\",\n    7571: \"Lingula\",\n    7574: \"Lingula anatina\",\n    7575: \"Lingula reevii\",\n    7578: \"Terebratulida\",\n    7579: \"Terebratulina\",\n    7580: \"Terebratulina retusa\",\n    7581: \"Comatulida\",\n    7583: \"Mariametridae\",\n    7584: \"Lamprometra\",\n    7585: \"Lamprometra palmata\",\n    7586: \"Echinodermata\",\n    7587: \"Asterozoa\",\n    7588: \"Asteroidea\",\n    7589: \"Dermasterias\",\n    7590: \"Dermasterias imbricata\",\n    7591: \"Velatida\",\n    7592: \"Asterinidae\",\n    7593: \"Asterina\",\n    7594: \"Patiria pectinifera\",\n    7596: \"Solasteridae\",\n    7597: \"Solaster\",\n    7598: \"Solaster stimpsoni\",\n    7599: \"Forcipulatida\",\n    7600: \"Asteriidae\",\n    7601: \"Asterias\",\n    7602: \"Asterias amurensis\",\n    7603: \"Asterias forbesi\",\n    7604: \"Asterias rubens\",\n    7608: \"Marthasterias\",\n    7609: \"Marthasterias glacialis\",\n    7610: \"Pisaster\",\n    7611: \"Pisaster brevispinus\",\n    7612: \"Pisaster ochraceus\",\n    7613: \"Pycnopodia\",\n    7614: \"Pycnopodia helianthoides\",\n    7615: \"Evasterias\",\n    7616: \"Evasterias troschelii\",\n    7618: \"Ophiuroidea\",\n    7619: \"Ophiurida\",\n    7620: \"Chilophiurina\",\n    7621: \"Ophiocomidae\",\n    7622: \"Ophiocoma\",\n    7623: \"Ophiocoma wendtii\",\n    7624: \"Echinozoa\",\n    7625: \"Echinoidea\",\n    7626: \"Perischoechinoidea\",\n    7627: \"Cidaroida\",\n    7630: \"Cidaridae\",\n    7631: \"Eucidaris\",\n    7632: \"Eucidaris tribuloides\",\n    7633: \"Heliocidaris\",\n    7634: \"Heliocidaris erythrogramma\",\n    7635: \"Heliocidaris tuberculata\",\n    7638: \"Euechinoidea\",\n    7639: \"Arbacia\",\n    7640: \"Arbacia lixula\",\n    7641: \"Arbacia punctulata\",\n    7642: \"Arbacia sp.\",\n    7643: \"Clypeaster\",\n    7644: \"Clypeaster japonicus\",\n    7645: \"Echinolampas\",\n    7646: \"Echinolampas crassa\",\n    7647: \"Echinus\",\n    7648: \"Echinus esculentus\",\n    7649: \"Hemicentrotus\",\n    7650: \"Hemicentrotus pulcherrimus\",\n    7651: \"Hemicentrotus sp.\",\n    7652: \"Lytechinus\",\n    7653: \"Lytechinus pictus\",\n    7654: \"Lytechinus variegatus\",\n    7655: \"Paracentrotus\",\n    7656: \"Paracentrotus lividus\",\n    7657: \"Parechinus\",\n    7658: \"Parechinus angulosus\",\n    7659: \"Psammechinus\",\n    7660: \"Psammechinus miliaris\",\n    7661: \"Stomopneustes\",\n    7663: \"Stomopneustes variolaris\",\n    7664: \"Strongylocentrotus\",\n    7666: \"Mesocentrotus nudus\",\n    7667: \"Strongylocentrotus intermedius\",\n    7668: \"Strongylocentrotus purpuratus\",\n    7670: \"Strongylocentrotus pallidus\",\n    7671: \"Strongylocentrotus droebachiensis\",\n    7672: \"Tripneustes\",\n    7673: \"Tripneustes gratilla\",\n    7674: \"Echinacea\",\n    7675: \"Echinoida\",\n    7676: \"Echinidae\",\n    7677: \"Pseudocentrotus\",\n    7678: \"Pseudocentrotus depressus\",\n    7679: \"unidentified sea urchin\",\n    7681: \"Aspidochirotacea\",\n    7682: \"Aspidochirotida\",\n    7683: \"Holothuriidae\",\n    7684: \"Holothuria\",\n    7685: \"Holothuria tubulosa\",\n    7687: \"Stichopodidae\",\n    7688: \"Parastichopus\",\n    7691: \"Stichopus\",\n    7693: \"Stichopus oshimae\",\n    7694: \"Apodacea\",\n    7695: \"Molpadida\",\n    7696: \"Caudinidae\",\n    7697: \"Caudina\",\n    7698: \"Molpadia arenicola\",\n    7699: \"Paracaudina\",\n    7700: \"Paracaudina chilensis\",\n    7701: \"Apodida\",\n    7702: \"Synaptidae\",\n    7703: \"Leptosynapta\",\n    7704: \"Leptosynapta inhaerens\",\n    7705: \"Holothuroidea\",\n    7706: \"Dendrochirotacea\",\n    7707: \"Dendrochirotida\",\n    7709: \"Sclerodactyla\",\n    7710: \"Sclerodactyla briareus\",\n    7711: \"Chordata\",\n    7712: \"Tunicata\",\n    7713: \"Ascidiacea\",\n    7716: \"Phlebobranchia\",\n    7717: \"Cionidae\",\n    7718: \"Ciona\",\n    7719: \"Ciona intestinalis\",\n    7720: \"Stolidobranchia\",\n    7721: \"Styelidae\",\n    7722: \"Polyandrocarpa\",\n    7723: \"Polyandrocarpa misakiensis\",\n    7724: \"Styela\",\n    7725: \"Styela clava\",\n    7726: \"Styela plicata\",\n    7727: \"Pyuridae\",\n    7728: \"Halocynthia\",\n    7729: \"Halocynthia roretzi\",\n    7730: \"Pyura\",\n    7731: \"Pyura stolonifera\",\n    7732: \"Herdmania\",\n    7733: \"Herdmania momus\",\n    7734: \"Pyuridae gen. sp.\",\n    7735: \"Cephalochordata\",\n    7736: \"Branchiostomidae\",\n    7737: \"Branchiostoma\",\n    7738: \"Branchiostoma californiense\",\n    7739: \"Branchiostoma floridae\",\n    7740: \"Branchiostoma lanceolatum\",\n    7741: \"Branchiostoma belcheri\",\n    7742: \"Vertebrata\",\n    7745: \"Petromyzontiformes\",\n    7746: \"Petromyzontidae\",\n    7748: \"Lampetra fluviatilis\",\n    7750: \"Lampetra planeri\",\n    7752: \"Lampetra aepyptera\",\n    7753: \"Lethenteron reissneri\",\n    7754: \"Mordacia\",\n    7755: \"Mordacia mordax\",\n    7756: \"Petromyzon\",\n    7757: \"Petromyzon marinus\",\n    7758: \"Petromyzontidae gen. sp.\",\n    7761: \"Myxiniformes\",\n    7762: \"Myxinidae\",\n    7763: \"Eptatretus\",\n    7764: \"Eptatretus burgeri\",\n    7765: \"Eptatretus stoutii\",\n    7767: \"Eptatretus okinoseanus\",\n    7769: \"Myxine glutinosa\",\n    7772: \"Ichthyomyzon\",\n    7776: \"Gnathostomata\",\n    7777: \"Chondrichthyes\",\n    7778: \"Elasmobranchii\",\n    7780: \"Raja\",\n    7781: \"Raja clavata\",\n    7782: \"Leucoraja erinacea\",\n    7784: \"Discopyge\",\n    7786: \"Torpedo\",\n    7787: \"Tetronarce californica\",\n    7788: \"Torpedo marmorata\",\n    7790: \"Heterodontidae\",\n    7791: \"Heterodontus\",\n    7792: \"Heterodontus francisci\",\n    7793: \"Heterodontus portusjacksoni\",\n    7796: \"Squalus\",\n    7797: \"Squalus acanthias\",\n    7798: \"Squalus suckleyi\",\n    7800: \"Ginglymostoma\",\n    7801: \"Ginglymostoma cirratum\",\n    7802: \"Odontaspididae\",\n    7805: \"Carcharhinidae\",\n    7806: \"Carcharhinus\",\n    7807: \"Carcharhinus obscurus\",\n    7808: \"Carcharhinus plumbeus\",\n    7810: \"Carcharhinus porosus\",\n    7811: \"Mustelus\",\n    7812: \"Mustelus canis\",\n    7813: \"Mustelus antarcticus\",\n    7814: \"Prionace\",\n    7815: \"Prionace glauca\",\n    7816: \"Scoliodon\",\n    7818: \"Galeocerdo\",\n    7819: \"Galeocerdo cuvier\",\n    7820: \"Negaprion\",\n    7821: \"Negaprion brevirostris\",\n    7822: \"Sphyrna\",\n    7823: \"Sphyrna lewini\",\n    7824: \"Sphyrna tiburo\",\n    7825: \"Sphyrna tiburo vespertina\",\n    7826: \"Scyliorhinidae\",\n    7827: \"Poroderma\",\n    7829: \"Scyliorhinus\",\n    7830: \"Scyliorhinus canicula\",\n    7832: \"Echinorhinidae\",\n    7833: \"Echinorhinus\",\n    7834: \"Echinorhinus cookei\",\n    7839: \"Triakidae\",\n    7840: \"Triakis\",\n    7844: \"Lamninae\",\n    7845: \"Isurus\",\n    7847: \"Isurus paucus\",\n    7848: \"Lamna\",\n    7849: \"Lamna nasus\",\n    7850: \"Alopiidae\",\n    7851: \"Alopias\",\n    7852: \"Alopias vulpinus\",\n    7855: \"Hexanchidae\",\n    7856: \"Notorynchus\",\n    7857: \"Notorynchus cepedianus\",\n    7858: \"Rajiformes\",\n    7860: \"Rhinobatidae\",\n    7861: \"Rhinobatos\",\n    7862: \"Pseudobatos lentiginosus\",\n    7863: \"Holocephali\",\n    7864: \"Chimaeriformes\",\n    7865: \"Callorhinchidae\",\n    7866: \"Callorhinchus\",\n    7867: \"Callorhinchus callorynchus\",\n    7868: \"Callorhinchus milii\",\n    7869: \"Chimaeridae\",\n    7870: \"Chimaera\",\n    7871: \"Chimaera monstrosa\",\n    7872: \"Hydrolagus\",\n    7873: \"Hydrolagus colliei\",\n    7874: \"Galeorhinus\",\n    7878: \"Dipnoi\",\n    7879: \"Lepidosireniformes\",\n    7880: \"Lepidosirenidae\",\n    7881: \"Lepidosiren\",\n    7883: \"Lepidosiren paradoxa\",\n    7884: \"Protopteridae\",\n    7885: \"Protopterus\",\n    7886: \"Protopterus aethiopicus\",\n    7887: \"Protopterus sp.\",\n    7888: \"Protopterus annectens\",\n    7889: \"Ceratodontidae\",\n    7890: \"Neoceratodus\",\n    7892: \"Neoceratodus forsteri\",\n    7894: \"Coelacanthiformes\",\n    7895: \"Coelacanthidae\",\n    7896: \"Latimeria\",\n    7897: \"Latimeria chalumnae\",\n    7898: \"Actinopterygii\",\n    7899: \"Acipenseriformes\",\n    7900: \"Acipenseridae\",\n    7901: \"Acipenser\",\n    7902: \"Acipenser gueldenstaedtii\",\n    7903: \"Acipenser stellatus\",\n    7904: \"Acipenser transmontanus\",\n    7906: \"Acipenser ruthenus\",\n    7907: \"Acipenser brevirostrum\",\n    7908: \"Acipenser medirostris\",\n    7909: \"Scaphirhynchus\",\n    7910: \"Scaphirhynchus platorynchus\",\n    7911: \"Polyodontidae\",\n    7912: \"Polyodon\",\n    7913: \"Polyodon spathula\",\n    7914: \"Semionotiformes\",\n    7915: \"Lepisosteidae\",\n    7916: \"Lepisosteus\",\n    7917: \"Atractosteus spatula\",\n    7918: \"Lepisosteus oculatus\",\n    7921: \"Amiiformes\",\n    7922: \"Amiidae\",\n    7923: \"Amia\",\n    7924: \"Amia calva\",\n    7925: \"Elopiformes\",\n    7926: \"Elopidae\",\n    7927: \"Elops\",\n    7928: \"Elops saurus\",\n    7930: \"Megalopidae\",\n    7931: \"Megalops\",\n    7932: \"Megalops atlanticus\",\n    7933: \"Anguilliformes\",\n    7934: \"Anguillidae\",\n    7935: \"Anguilla\",\n    7936: \"Anguilla anguilla\",\n    7937: \"Anguilla japonica\",\n    7938: \"Anguilla rostrata\",\n    7939: \"Anguilla marmorata\",\n    7940: \"Anguilla australis\",\n    7941: \"Congridae\",\n    7942: \"Conger\",\n    7943: \"Conger myriaster\",\n    7944: \"Muraenesocidae\",\n    7945: \"Muraenesox\",\n    7946: \"Muraenesox cinereus\",\n    7948: \"Clupeinae\",\n    7949: \"Clupea\",\n    7950: \"Clupea harengus\",\n    7952: \"Cypriniformes\",\n    7953: \"Cyprinidae\",\n    7954: \"Danio\",\n    7955: \"Danio rerio\",\n    7956: \"Carassius\",\n    7957: \"Carassius auratus\",\n    7958: \"Ctenopharyngodon\",\n    7959: \"Ctenopharyngodon idella\",\n    7961: \"Cyprinus\",\n    7962: \"Cyprinus carpio\",\n    7963: \"Hypophthalmichthys\",\n    7965: \"Hypophthalmichthys nobilis\",\n    7966: \"Lythrurus\",\n    7967: \"Lythrurus roseipinnis\",\n    7968: \"Catostomidae\",\n    7969: \"Catostomus\",\n    7970: \"Catostomus clarkii\",\n    7971: \"Catostomus commersonii\",\n    7972: \"Ictiobus\",\n    7973: \"Ictiobus bubalus\",\n    7979: \"Formosania\",\n    7980: \"Formosania lacustris\",\n    7982: \"Cobitidae\",\n    7983: \"Misgurnus\",\n    7984: \"Misgurnus fossilis\",\n    7986: \"Anostomidae\",\n    7987: \"Leporinus\",\n    7988: \"Megaleporinus elongatus\",\n    7991: \"Characiformes\",\n    7992: \"Characidae\",\n    7993: \"Astyanax\",\n    7994: \"Astyanax mexicanus\",\n    7995: \"Siluriformes\",\n    7996: \"Ictaluridae\",\n    7997: \"Ictalurus\",\n    7998: \"Ictalurus punctatus\",\n    7999: \"Pangasiidae\",\n    8000: \"Pangasius\",\n    8001: \"Pangasius pangasius\",\n    8002: \"Gymnotiformes\",\n    8004: \"Electrophorus\",\n    8005: \"Electrophorus electricus\",\n    8006: \"Salmoniformes\",\n    8007: \"Esociformes\",\n    8008: \"Esocidae\",\n    8009: \"Esox\",\n    8010: \"Esox lucius\",\n    8012: \"Osmeridae\",\n    8013: \"Osmerus\",\n    8014: \"Osmerus mordax\",\n    8015: \"Salmonidae\",\n    8016: \"Oncorhynchus\",\n    8017: \"Oncorhynchus gorbuscha\",\n    8018: \"Oncorhynchus keta\",\n    8019: \"Oncorhynchus kisutch\",\n    8020: \"Oncorhynchus masou\",\n    8021: \"Oncorhynchus masou ishikawae\",\n    8022: \"Oncorhynchus mykiss\",\n    8023: \"Oncorhynchus nerka\",\n    8025: \"Oncorhynchus sp.\",\n    8028: \"Salmo\",\n    8030: \"Salmo salar\",\n    8031: \"Salmo sp.\",\n    8032: \"Salmo trutta\",\n    8033: \"Salvelinus\",\n    8034: \"Salvelinus leucomaenis\",\n    8035: \"Salvelinus leucomaenis pluvius\",\n    8036: \"Salvelinus alpinus\",\n    8037: \"Salvelinus confluentus\",\n    8038: \"Salvelinus fontinalis\",\n    8039: \"Salvelinus malma\",\n    8040: \"Salvelinus namaycush\",\n    8041: \"Hucho\",\n    8042: \"Parahucho perryi\",\n    8043: \"Gadiformes\",\n    8045: \"Gadidae\",\n    8046: \"Eleginus\",\n    8047: \"Eleginus gracilis\",\n    8048: \"Gadus\",\n    8049: \"Gadus morhua\",\n    8051: \"Gadus sp.\",\n    8052: \"Gadus ogac\",\n    8053: \"Gadus morhua callarias\",\n    8055: \"Melanogrammus\",\n    8056: \"Melanogrammus aeglefinus\",\n    8057: \"Merlangius\",\n    8058: \"Merlangius merlangus\",\n    8059: \"Pollachius\",\n    8060: \"Pollachius virens\",\n    8061: \"Merlucciidae\",\n    8062: \"Merluccius\",\n    8063: \"Merluccius merluccius\",\n    8064: \"Batrachoidiformes\",\n    8065: \"Batrachoididae\",\n    8066: \"Batrachoididae gen. sp.\",\n    8067: \"Opsanus\",\n    8068: \"Opsanus tau\",\n    8070: \"Lophiiformes\",\n    8071: \"Lophiidae\",\n    8072: \"Lophius\",\n    8073: \"Lophius americanus\",\n    8074: \"Lophius piscatorius\",\n    8075: \"Atheriniformes\",\n    8076: \"Cyprinodontidae\",\n    8077: \"Fundulus\",\n    8078: \"Fundulus heteroclitus\",\n    8079: \"Poeciliidae\",\n    8080: \"Poecilia\",\n    8081: \"Poecilia reticulata\",\n    8082: \"Xiphophorus\",\n    8083: \"Xiphophorus maculatus\",\n    8084: \"Xiphophorus hellerii\",\n    8085: \"Xiphophorus sp.\",\n    8086: \"Xiphophorus xiphidium\",\n    8087: \"Cyprinodontoidei\",\n    8088: \"Oryziinae\",\n    8089: \"Oryzias\",\n    8090: \"Oryzias latipes\",\n    8092: \"Cottidae\",\n    8093: \"Hemitripterus\",\n    8094: \"Hemitripterus americanus\",\n    8095: \"Myoxocephalus\",\n    8096: \"Myoxocephalus aenaeus\",\n    8097: \"Myoxocephalus scorpius\",\n    8098: \"Cottus\",\n    8099: \"Leocottus kesslerii\",\n    8100: \"Cottioidei\",\n    8101: \"Cyclopteridae\",\n    8102: \"Cyclopterus\",\n    8103: \"Cyclopterus lumpus\",\n    8107: \"Scorpaenoidei\",\n    8108: \"Scorpaenidae\",\n    8109: \"Sebastolobus\",\n    8110: \"Sebastolobus altivelis\",\n    8111: \"Perciformes\",\n    8112: \"Percoidei\",\n    8113: \"Cichlidae\",\n    8114: \"Cichlasoma\",\n    8117: \"Herichthys cyanoguttatus\",\n    8121: \"Haplochromis\",\n    8124: \"Julidochromis\",\n    8125: \"Julidochromis regani\",\n    8126: \"Tilapia\",\n    8127: \"Oreochromis mossambicus\",\n    8128: \"Oreochromis niloticus\",\n    8129: \"Coptodon rendalli\",\n    8130: \"Coptodon zillii\",\n    8139: \"Oreochromis\",\n    8141: \"Oreochromis placidus\",\n    8142: \"Oreochromis tanganicae\",\n    8143: \"Sarotherodon\",\n    8144: \"Sarotherodon galilaeus\",\n    8145: \"Tropheus\",\n    8146: \"Tropheus annectens\",\n    8147: \"Tropheus brichardi\",\n    8148: \"Tropheus duboisi\",\n    8149: \"Tropheus kasabae\",\n    8150: \"Tropheus moorii\",\n    8151: \"Tropheus polli\",\n    8152: \"Astatotilapia\",\n    8153: \"Haplochromis burtoni\",\n    8154: \"Astatotilapia calliptera\",\n    8155: \"Simochromis\",\n    8156: \"Pseudosimochromis babaulti\",\n    8157: \"Carangidae\",\n    8158: \"Caranx\",\n    8160: \"Seriola\",\n    8161: \"Seriola quinqueradiata\",\n    8162: \"Percichthyidae\",\n    8163: \"Lateolabrax\",\n    8164: \"Lateolabrax japonicus\",\n    8165: \"Percidae\",\n    8166: \"Perca\",\n    8167: \"Perca flavescens\",\n    8168: \"Perca fluviatilis\",\n    8169: \"Sparidae\",\n    8172: \"Pagrus\",\n    8173: \"Pagrus pagrus\",\n    8174: \"Sparus\",\n    8175: \"Sparus aurata\",\n    8176: \"Acanthopagrus\",\n    8177: \"Acanthopagrus latus\",\n    8179: \"Acanthopagrus butcheri\",\n    8180: \"Centrarchidae\",\n    8181: \"Pomoxis\",\n    8182: \"Pomoxis nigromaculatus\",\n    8184: \"Centropomidae\",\n    8186: \"Lates\",\n    8187: \"Lates calcarifer\",\n    8189: \"Mugilidae\",\n    8190: \"Mugil\",\n    8192: \"Zoarcales\",\n    8193: \"Zoarcidae\",\n    8196: \"Lycodes\",\n    8197: \"Lycodes polaris\",\n    8199: \"Zoarces americanus\",\n    8200: \"Lycodichthys\",\n    8201: \"Lycodichthys dearborni\",\n    8202: \"Anarhichadidae\",\n    8203: \"Anarhichas\",\n    8204: \"Anarhichas lupus\",\n    8205: \"Notothenioidei\",\n    8206: \"Nototheniidae\",\n    8207: \"Notothenia\",\n    8208: \"Notothenia coriiceps\",\n    8210: \"Notothenia angustata\",\n    8211: \"Pagothenia\",\n    8213: \"Pagothenia borchgrevinki\",\n    8214: \"Bathydraconidae\",\n    8215: \"Cygnodraco\",\n    8216: \"Cygnodraco mawsoni\",\n    8217: \"Gymnodraco\",\n    8218: \"Gymnodraco acuticeps\",\n    8219: \"Gobioidei\",\n    8220: \"Gobiidae\",\n    8221: \"Gillichthys\",\n    8222: \"Gillichthys mirabilis\",\n    8224: \"Scombridae\",\n    8225: \"Euthynnus\",\n    8226: \"Katsuwonus pelamis\",\n    8227: \"Euthynnus affinis\",\n    8228: \"Euthynnus alletteratus\",\n    8229: \"Sarda\",\n    8230: \"Sarda orientalis\",\n    8231: \"Sarda chiliensis\",\n    8232: \"Sarda sarda\",\n    8233: \"Scombridae gen. sp.\",\n    8234: \"Thunnus\",\n    8235: \"Thunnus alalunga\",\n    8236: \"Thunnus albacares\",\n    8237: \"Thunnus thynnus\",\n    8238: \"Thunnus orientalis\",\n    8239: \"Thunnus sp.\",\n    8240: \"Thunnus maccoyii\",\n    8241: \"Thunnus obesus\",\n    8242: \"Thunnus thynnus thynnus\",\n    8243: \"Xiphiidae\",\n    8244: \"Xiphias\",\n    8245: \"Xiphias gladius\",\n    8247: \"Labridae\",\n    8248: \"Gomphosus\",\n    8249: \"Gomphosus varius\",\n    8252: \"Pleuronectiformes\",\n    8253: \"Bothidae\",\n    8254: \"Paralichthys\",\n    8255: \"Paralichthys olivaceus\",\n    8256: \"Pleuronectidae\",\n    8257: \"Limanda\",\n    8258: \"Myzopsetta ferruginea\",\n    8259: \"Platichthys\",\n    8260: \"Platichthys flesus\",\n    8261: \"Pleuronectes\",\n    8262: \"Pleuronectes platessa\",\n    8264: \"Pseudopleuronectes\",\n    8265: \"Pseudopleuronectes americanus\",\n    8266: \"Hippoglossus\",\n    8267: \"Hippoglossus hippoglossus\",\n    8274: \"Pantodontidae\",\n    8275: \"Pantodon\",\n    8276: \"Pantodon buchholzi\",\n    8277: \"Beryciformes\",\n    8279: \"Anomalopidae\",\n    8283: \"Leuciscus\",\n    8284: \"Squalius cephalus\",\n    8285: \"Pardachirus\",\n    8286: \"Pardachirus pavoninus\",\n    8287: \"Sarcopterygii\",\n    8288: \"Polypteriformes\",\n    8289: \"Polypteridae\",\n    8290: \"Polypterus\",\n    8291: \"Polypterus sp.\",\n    8292: \"Amphibia\",\n    8293: \"Caudata\",\n    8294: \"Ambystomatidae\",\n    8295: \"Ambystoma\",\n    8296: \"Ambystoma mexicanum\",\n    8297: \"Ambystoma jeffersonianum\",\n    8298: \"Ambystoma laterale\",\n    8299: \"Ambystoma laterale x Ambystoma jeffersonianum\",\n    8304: \"Ambystoma texanum\",\n    8305: \"Ambystoma tigrinum\",\n    8306: \"Ambystoma talpoideum\",\n    8307: \"Ambystoma 'unisexual hybrid'\",\n    8310: \"Amphiumidae\",\n    8311: \"Amphiuma\",\n    8312: \"Amphiuma means\",\n    8313: \"Amphiuma tridactylum\",\n    8314: \"Salamandridae\",\n    8315: \"Notophthalmus\",\n    8316: \"Notophthalmus viridescens\",\n    8317: \"Pleurodeles\",\n    8319: \"Pleurodeles waltl\",\n    8320: \"Taricha\",\n    8321: \"Taricha granulosa\",\n    8322: \"Triturus\",\n    8323: \"Triturus cristatus\",\n    8324: \"Lissotriton vulgaris\",\n    8325: \"Triturus karelinii\",\n    8326: \"Triturus carnifex\",\n    8327: \"Triturus dobrogicus\",\n    8328: \"Triturus marmoratus\",\n    8329: \"Cynops\",\n    8330: \"Cynops pyrrhogaster\",\n    8332: \"Plethodontidae\",\n    8333: \"Bolitoglossa\",\n    8334: \"Bolitoglossa subpalmata\",\n    8335: \"Plethodon\",\n    8336: \"Plethodon jordani\",\n    8337: \"Plethodon yonahlossee\",\n    8339: \"Sirenidae\",\n    8340: \"Siren\",\n    8341: \"Siren intermedia\",\n    8342: \"Anura\",\n    8343: \"Alytidae\",\n    8344: \"Bombina\",\n    8345: \"Bombina bombina\",\n    8346: \"Bombina orientalis\",\n    8348: \"Bombina variegata\",\n    8349: \"Bombina sp.\",\n    8350: \"Discoglossus\",\n    8351: \"Discoglossus pictus\",\n    8352: \"Pipidae\",\n    8353: \"Xenopus\",\n    8354: \"Xenopus borealis\",\n    8355: \"Xenopus laevis\",\n    8356: \"Xenopus sp.\",\n    8358: \"Xenopus clivii\",\n    8359: \"Xenopus laevis/gilli\",\n    8360: \"Xenopodinae\",\n    8361: \"Hymenochirus\",\n    8362: \"Hymenochirus curtipes\",\n    8363: \"Silurana\",\n    8364: \"Xenopus tropicalis\",\n    8365: \"Myobatrachidae\",\n    8366: \"Uperoleia\",\n    8367: \"Uperoleia marmorata\",\n    8368: \"Uperoleia rugosa\",\n    8370: \"Litoria\",\n    8371: \"Litoria aurea\",\n    8372: \"Leptodactylidae\",\n    8373: \"Crinia\",\n    8374: \"Crinia georgiana\",\n    8375: \"Lepidobatrachus\",\n    8376: \"Lepidobatrachus laevis\",\n    8377: \"Physalaemus\",\n    8378: \"Physalaemus fuscomaculatus\",\n    8380: \"Eleutherodactylus\",\n    8381: \"Eleutherodactylus cuneatus\",\n    8382: \"Bufonidae\",\n    8383: \"Bufo\",\n    8384: \"Bufo bufo\",\n    8386: \"Rhinella marina\",\n    8387: \"Bufo japonicus\",\n    8388: \"Incilius valliceps\",\n    8389: \"Anaxyrus americanus\",\n    8392: \"Phyllomedusa\",\n    8393: \"Phyllomedusa bicolor\",\n    8394: \"Pithecopus rohdei\",\n    8395: \"Phyllomedusa sauvagii\",\n    8397: \"Ranidae\",\n    8398: \"Ranidae gen. sp.\",\n    8399: \"Rana\",\n    8400: \"Lithobates catesbeianus\",\n    8401: \"Pelophylax esculentus\",\n    8402: \"Rana japonica\",\n    8403: \"Pelophylax perezi\",\n    8404: \"Rana pipiens\",\n    8406: \"Pelophylax ridibundus\",\n    8407: \"Rana temporaria\",\n    8409: \"Pelophylax nigromaculatus\",\n    8410: \"Rugosa rugosa\",\n    8412: \"Hyperoliidae\",\n    8413: \"Kassina\",\n    8414: \"Kassina maculata\",\n    8415: \"Kassina senegalensis\",\n    8416: \"Neobatrachia\",\n    8417: \"Hyloidea\",\n    8418: \"Hylidae\",\n    8419: \"Gastrotheca\",\n    8420: \"Gastrotheca riobambae\",\n    8421: \"Hyla\",\n    8422: \"Dryophytes cinereus\",\n    8423: \"Sooglossidae\",\n    8425: \"Sooglossus thomasseti\",\n    8426: \"Microhyloidea\",\n    8427: \"Microhylidae\",\n    8428: \"Gastrophryne\",\n    8429: \"Gastrophryne carolinensis\",\n    8431: \"Pelobatoidea\",\n    8432: \"Pelobatidae\",\n    8434: \"Scaphiopus\",\n    8435: \"Scaphiopus holbrookii\",\n    8438: \"Ascaphus\",\n    8439: \"Ascaphus truei\",\n    8441: \"Rana sp.\",\n    8442: \"Alytes\",\n    8443: \"Alytes obstetricans\",\n    8445: \"Gymnophiona\",\n    8446: \"Caeciliidae\",\n    8447: \"Grandisonia\",\n    8448: \"Grandisonia alternans\",\n    8449: \"Hypogeophis\",\n    8450: \"Hypogeophis rostratus\",\n    8451: \"Ichthyophiidae\",\n    8452: \"Ichthyophis\",\n    8453: \"Ichthyophis bannanicus\",\n    8454: \"Typhlonectidae\",\n    8455: \"Typhlonectes\",\n    8456: \"Typhlonectes natans\",\n    8457: \"Sauropsida\",\n    8459: \"Testudines\",\n    8460: \"Pleurodira\",\n    8461: \"Chelidae\",\n    8462: \"Phrynops\",\n    8463: \"Phrynops hilarii\",\n    8464: \"Cryptodira\",\n    8465: \"Cheloniidae\",\n    8466: \"Caretta\",\n    8467: \"Caretta caretta\",\n    8468: \"Chelonia\",\n    8469: \"Chelonia mydas\",\n    8471: \"Lepidochelys\",\n    8472: \"Lepidochelys kempii\",\n    8473: \"Chelydridae\",\n    8474: \"Chelydra\",\n    8475: \"Chelydra serpentina\",\n    8476: \"Emydidae\",\n    8477: \"Chrysemys\",\n    8478: \"Chrysemys picta bellii\",\n    8479: \"Chrysemys picta\",\n    8480: \"Graptemys\",\n    8481: \"Graptemys geographica\",\n    8484: \"Malaclemys\",\n    8485: \"Malaclemys terrapin\",\n    8486: \"Testudinoidea\",\n    8487: \"Testudinidae\",\n    8488: \"Chinemys\",\n    8492: \"Archosauria\",\n    8493: \"Crocodylidae\",\n    8495: \"Alligator\",\n    8496: \"Alligator mississippiensis\",\n    8497: \"Caiman\",\n    8499: \"Caiman crocodilus\",\n    8500: \"Crocodylus\",\n    8501: \"Crocodylus niloticus\",\n    8502: \"Crocodylus porosus\",\n    8503: \"Crocodylus novaeguineae\",\n    8504: \"Lepidosauria\",\n    8505: \"Sphenodontia\",\n    8506: \"Sphenodontidae\",\n    8507: \"Sphenodon\",\n    8508: \"Sphenodon punctatus\",\n    8509: \"Squamata\",\n    8511: \"Iguania\",\n    8515: \"Iguanidae\",\n    8516: \"Iguana\",\n    8517: \"Iguana iguana\",\n    8518: \"Sceloporus\",\n    8519: \"Sceloporus occidentalis\",\n    8520: \"Sceloporus undulatus\",\n    8522: \"Lacertidae\",\n    8523: \"Lacerta\",\n    8524: \"Zootoca vivipara\",\n    8526: \"Tiliqua\",\n    8527: \"Tiliqua rugosa\",\n    8528: \"Eumeces\",\n    8530: \"Teiidae\",\n    8531: \"Tupinambis\",\n    8532: \"Tupinambis teguixin\",\n    8533: \"Ameiva\",\n    8534: \"Pholidoscelis auberi\",\n    8535: \"Ameiva ameiva\",\n    8536: \"Xantusiidae\",\n    8537: \"Cricosaurinae\",\n    8538: \"Cricosaura\",\n    8539: \"Cricosaura typica\",\n    8540: \"Xantusiinae\",\n    8541: \"Lepidophyma\",\n    8542: \"Lepidophyma smithii\",\n    8543: \"Xantusia\",\n    8544: \"Xantusia bolsonae\",\n    8545: \"Xantusia henshawi\",\n    8546: \"Xantusia riversiana\",\n    8547: \"Xantusia vigilis\",\n    8548: \"Anguimorpha\",\n    8549: \"Helodermatidae\",\n    8550: \"Heloderma\",\n    8551: \"Heloderma horridum\",\n    8552: \"Heloderma horridum horridum\",\n    8553: \"Heloderma sp.\",\n    8554: \"Heloderma suspectum\",\n    8555: \"Varanidae\",\n    8556: \"Varanus\",\n    8557: \"Varanus exanthematicus\",\n    8558: \"Varanus albigularis\",\n    8559: \"Varanus varius\",\n    8560: \"Gekkota\",\n    8561: \"Gekkonidae\",\n    8565: \"Gekko\",\n    8568: \"Tarentola\",\n    8569: \"Tarentola mauritanica\",\n    8570: \"Serpentes\",\n    8572: \"Boidae\",\n    8573: \"Boa\",\n    8574: \"Boa constrictor\",\n    8575: \"Epicrates\",\n    8576: \"Chilabothrus subflavus\",\n    8578: \"Colubridae\",\n    8579: \"Elaphe\",\n    8582: \"Erythrolamprus miliaris\",\n    8583: \"Natrix\",\n    8584: \"Natrix tessellata\",\n    8585: \"Natrix maura\",\n    8587: \"Ptyas dhumnades\",\n    8589: \"Coluber\",\n    8590: \"Coluber constrictor\",\n    8591: \"Nerodia\",\n    8592: \"Nerodia sipedon\",\n    8594: \"Pituophis\",\n    8595: \"Pituophis melanoleucus\",\n    8596: \"Heterodon\",\n    8597: \"Heterodon platirhinos\",\n    8598: \"Atractaspidinae\",\n    8599: \"Atractaspis\",\n    8600: \"Atractaspis andersonii\",\n    8602: \"Elapidae\",\n    8604: \"Acanthophis\",\n    8605: \"Acanthophis antarcticus\",\n    8606: \"Aspidelaps\",\n    8607: \"Aspidelaps scutatus\",\n    8608: \"Boulengerina\",\n    8609: \"Naja annulata\",\n    8610: \"Naja annulata annulata\",\n    8611: \"Naja christyi\",\n    8612: \"Bungarus\",\n    8613: \"Bungarus fasciatus\",\n    8614: \"Bungarus flaviceps\",\n    8615: \"Bungarus flaviceps flaviceps\",\n    8616: \"Bungarus multicinctus\",\n    8617: \"Dendroaspis\",\n    8618: \"Dendroaspis angusticeps\",\n    8619: \"Dendroaspis jamesoni kaimosae\",\n    8620: \"Dendroaspis polylepis polylepis\",\n    8621: \"Dendroaspis viridis\",\n    8623: \"Dendroaspis jamesoni\",\n    8624: \"Dendroaspis polylepis\",\n    8625: \"Hemachatus\",\n    8626: \"Hemachatus haemachatus\",\n    8627: \"Laticauda\",\n    8628: \"Laticauda colubrina\",\n    8629: \"Laticauda crockeri\",\n    8630: \"Laticauda laticaudata\",\n    8631: \"Laticauda semifasciata\",\n    8633: \"Calliophis bivirgatus\",\n    8634: \"Micrurus\",\n    8635: \"Micrurus nigrocinctus\",\n    8636: \"Micrurus tener microgalbineus\",\n    8637: \"Micrurus fulvius\",\n    8638: \"Naja\",\n    8639: \"Naja haje\",\n    8642: \"Naja haje haje\",\n    8643: \"Naja melanoleuca\",\n    8644: \"Naja mossambica\",\n    8649: \"Naja kaouthia\",\n    8654: \"Naja nigricollis\",\n    8655: \"Naja nivea\",\n    8656: \"Naja atra\",\n    8657: \"Naja oxiana\",\n    8658: \"Naja pallida\",\n    8659: \"Naja philippinensis\",\n    8660: \"Naja samarensis\",\n    8661: \"Notechis\",\n    8663: \"Notechis scutatus\",\n    8664: \"Ophiophagus\",\n    8665: \"Ophiophagus hannah\",\n    8666: \"Oxyuranus\",\n    8667: \"Oxyuranus scutellatus scutellatus\",\n    8668: \"Oxyuranus scutellatus\",\n    8669: \"Pseudechis\",\n    8670: \"Pseudechis australis\",\n    8671: \"Pseudechis porphyriacus\",\n    8672: \"Pseudonaja\",\n    8673: \"Pseudonaja textilis\",\n    8675: \"Acalyptophis\",\n    8676: \"Hydrophis peronii\",\n    8677: \"Aipysurus\",\n    8678: \"Aipysurus laevis\",\n    8679: \"Astrotia\",\n    8682: \"Hydrophis schistosus\",\n    8683: \"Hydrophis\",\n    8684: \"Hydrophis lapemoides\",\n    8685: \"Hydrophis ornatus\",\n    8686: \"Hydrophis cyanocinctus\",\n    8687: \"Pelamis\",\n    8688: \"Hydrophis platurus\",\n    8689: \"Viperidae\",\n    8690: \"Viperinae\",\n    8691: \"Bitis\",\n    8692: \"Bitis arietans\",\n    8693: \"Bitis caudalis\",\n    8694: \"Bitis gabonica\",\n    8695: \"Bitis nasicornis\",\n    8696: \"Cerastes\",\n    8697: \"Cerastes cerastes\",\n    8698: \"Cerastes vipera\",\n    8699: \"Echis\",\n    8700: \"Echis pyramidum\",\n    8703: \"Vipera\",\n    8704: \"Vipera ammodytes\",\n    8705: \"Vipera ammodytes ammodytes\",\n    8706: \"Vipera aspis\",\n    8707: \"Daboia russelii\",\n    8709: \"Macrovipera lebetina\",\n    8710: \"Crotalinae\",\n    8711: \"Agkistrodon\",\n    8713: \"Agkistrodon contortrix contortrix\",\n    8714: \"Gloydius halys\",\n    8715: \"Agkistrodon piscivorus\",\n    8716: \"Agkistrodon piscivorus piscivorus\",\n    8717: \"Calloselasma rhodostoma\",\n    8718: \"Agkistrodon bilineatus\",\n    8719: \"Gloydius halys halys\",\n    8720: \"Agkistrodon contortrix\",\n    8721: \"Bothrops\",\n    8722: \"Bothrops asper\",\n    8723: \"Bothrops insularis\",\n    8724: \"Bothrops jararaca\",\n    8725: \"Bothrops atrox\",\n    8726: \"Bothrops jararacussu\",\n    8727: \"Bothrops cotiara\",\n    8728: \"Crotalus\",\n    8729: \"Crotalus adamanteus\",\n    8730: \"Crotalus atrox\",\n    8731: \"Crotalus durissus\",\n    8732: \"Crotalus durissus terrificus\",\n    8733: \"Crotalus molossus\",\n    8734: \"Crotalus molossus nigrescens\",\n    8735: \"Crotalus ruber\",\n    8736: \"Crotalus ruber ruber\",\n    8737: \"Crotalus scutulatus\",\n    8738: \"Crotalus scutulatus scutulatus\",\n    8739: \"Crotalus viridis\",\n    8740: \"Crotalus oreganus concolor\",\n    8741: \"Crotalus oreganus helleri\",\n    8742: \"Crotalus viridis viridis\",\n    8743: \"Crotalus aquilus\",\n    8744: \"Crotalus basiliscus\",\n    8746: \"Crotalus cerastes\",\n    8747: \"Crotalus horridus horridus\",\n    8748: \"Crotalus pricei pricei\",\n    8749: \"Crotalus triseriatus triseriatus\",\n    8751: \"Lachesis\",\n    8752: \"Lachesis muta\",\n    8753: \"Lachesis muta muta\",\n    8755: \"Sistrurus\",\n    8756: \"Sistrurus catenatus\",\n    8757: \"Sistrurus tergeminus\",\n    8758: \"Sistrurus miliarius\",\n    8759: \"Sistrurus miliarius barbouri\",\n    8762: \"Sistrurus catenatus edwardsi\",\n    8764: \"Trimeresurus\",\n    8765: \"Trimeresurus albolabris\",\n    8767: \"Trimeresurus gramineus\",\n    8769: \"Ovophis okinavensis\",\n    8770: \"Tropidolaemus wagleri\",\n    8772: \"Azemiops\",\n    8773: \"Azemiops feae\",\n    8774: \"Calloselasma\",\n    8781: \"Hydrophis hardwickii\",\n    8782: \"Aves\",\n    8783: \"Palaeognathae\",\n    8784: \"Casuariiformes\",\n    8785: \"Casuariidae\",\n    8786: \"Casuarius\",\n    8787: \"Casuarius casuarius\",\n    8788: \"Dromaiidae\",\n    8789: \"Dromaius\",\n    8790: \"Dromaius novaehollandiae\",\n    8792: \"Rheiformes\",\n    8793: \"Rheidae\",\n    8794: \"Pterocnemia\",\n    8795: \"Pterocnemia pennata\",\n    8796: \"Rhea\",\n    8797: \"Rhea americana\",\n    8798: \"Struthioniformes\",\n    8799: \"Struthionidae\",\n    8800: \"Struthio\",\n    8801: \"Struthio camelus\",\n    8802: \"Tinamiformes\",\n    8803: \"Tinamidae\",\n    8804: \"Eudromia\",\n    8805: \"Eudromia elegans\",\n    8806: \"Nothoprocta\",\n    8807: \"Nothoprocta cinerascens\",\n    8808: \"Dinornithiformes\",\n    8809: \"Emeidae\",\n    8810: \"Anomalopteryx\",\n    8811: \"Anomalopteryx didiformis\",\n    8812: \"Megalapteryx\",\n    8813: \"Megalapteryx didinus\",\n    8814: \"Pachyornis\",\n    8815: \"Pachyornis elephantopus\",\n    8816: \"Dinornithidae\",\n    8817: \"Dinornis\",\n    8818: \"Dinornis novaezealandiae\",\n    8819: \"Apterygiformes\",\n    8820: \"Apterygidae\",\n    8821: \"Apteryx\",\n    8822: \"Apteryx australis\",\n    8823: \"Apteryx haastii\",\n    8824: \"Apteryx owenii\",\n    8825: \"Neognathae\",\n    8826: \"Anseriformes\",\n    8827: \"Anhimidae\",\n    8828: \"Chauna\",\n    8829: \"Chauna chavaria\",\n    8830: \"Anatidae\",\n    8831: \"Aix\",\n    8832: \"Aix galericulata\",\n    8833: \"Aix sponsa\",\n    8834: \"Aix sp.\",\n    8835: \"Anas\",\n    8837: \"Anas capensis\",\n    8838: \"Mareca penelope\",\n    8839: \"Anas platyrhynchos\",\n    8840: \"Anas platyrhynchos platyrhynchos\",\n    8841: \"Anas platyrhynchos x Cairina moschata\",\n    8842: \"Anser\",\n    8843: \"Anser anser\",\n    8844: \"Anser anser anser\",\n    8845: \"Anser cygnoides\",\n    8846: \"Anser indicus\",\n    8847: \"Anser sp.\",\n    8848: \"Anser anser domesticus\",\n    8849: \"Anser caerulescens\",\n    8850: \"Anseranas\",\n    8851: \"Anseranas semipalmata\",\n    8852: \"Branta\",\n    8853: \"Branta canadensis\",\n    8854: \"Cairina\",\n    8855: \"Cairina moschata\",\n    8856: \"Cairina sp.\",\n    8857: \"Cereopsis\",\n    8858: \"Cereopsis novaehollandiae\",\n    8859: \"Chloephaga\",\n    8860: \"Chloephaga melanoptera\",\n    8861: \"Chloephaga picta\",\n    8862: \"Coscoroba\",\n    8863: \"Coscoroba coscoroba\",\n    8864: \"Cyanochen\",\n    8865: \"Cyanochen cyanopterus\",\n    8867: \"Cygnus\",\n    8868: \"Cygnus atratus\",\n    8869: \"Cygnus olor\",\n    8870: \"Dendrocygna\",\n    8871: \"Dendrocygna arborea\",\n    8872: \"Dendrocygna arcuata\",\n    8873: \"Dendrocygna autumnalis\",\n    8874: \"Dendrocygna bicolor\",\n    8875: \"Dendrocygna eytoni\",\n    8876: \"Dendrocygna viduata\",\n    8877: \"Mergus\",\n    8879: \"Mergus serrator\",\n    8880: \"Mergus merganser\",\n    8881: \"Neochen\",\n    8882: \"Neochen jubata\",\n    8883: \"Oxyura\",\n    8884: \"Oxyura jamaicensis\",\n    8885: \"Oxyura vittata\",\n    8886: \"Sarkidiornis\",\n    8887: \"Sarkidiornis melanotos\",\n    8888: \"Tadorna\",\n    8889: \"Tadorna radjah\",\n    8892: \"Apodiformes\",\n    8893: \"Apodidae\",\n    8894: \"Apus\",\n    8895: \"Apus apus\",\n    8896: \"Chaetura\",\n    8897: \"Chaetura pelagica\",\n    8899: \"Ardeidae\",\n    8900: \"Nycticorax\",\n    8901: \"Nycticorax nycticorax\",\n    8902: \"Caprimulgiformes\",\n    8903: \"Podargidae\",\n    8904: \"Podargus\",\n    8905: \"Podargus strigoides\",\n    8906: \"Charadriiformes\",\n    8907: \"Charadriidae\",\n    8908: \"Hoplopterus\",\n    8909: \"Hoplopterus spinosus\",\n    8910: \"Laridae\",\n    8911: \"Larus\",\n    8912: \"Larus marinus\",\n    8915: \"Larus fuscus\",\n    8917: \"Scolopacidae\",\n    8918: \"Calidris\",\n    8919: \"Calidris alpina\",\n    8920: \"Ciconiiformes\",\n    8922: \"Cathartidae\",\n    8923: \"Vultur\",\n    8924: \"Vultur gryphus\",\n    8926: \"Ciconiidae\",\n    8927: \"Ciconia\",\n    8928: \"Ciconia ciconia\",\n    8929: \"Columbiformes\",\n    8930: \"Columbidae\",\n    8931: \"Columba\",\n    8932: \"Columba livia\",\n    8933: \"Columba sp.\",\n    8934: \"Columba palumbus\",\n    8936: \"Coraciiformes\",\n    8937: \"Alcedinidae\",\n    8938: \"Dacelo\",\n    8939: \"Dacelo novaeguineae\",\n    8940: \"Cuculiformes\",\n    8941: \"Cuculidae\",\n    8942: \"Carpococcyx\",\n    8943: \"Carpococcyx renauldi\",\n    8944: \"Eudynamys\",\n    8945: \"Eudynamys scolopaceus\",\n    8946: \"Geococcyx\",\n    8947: \"Geococcyx californianus\",\n    8948: \"Falconiformes\",\n    8949: \"Falconidae\",\n    8951: \"Caracara plancus\",\n    8952: \"Falco\",\n    8953: \"Falco columbarius\",\n    8954: \"Falco peregrinus\",\n    8955: \"Accipitrinae\",\n    8956: \"Accipiter\",\n    8957: \"Accipiter gentilis\",\n    8958: \"Aegypius\",\n    8959: \"Aegypius monachus\",\n    8960: \"Aquila\",\n    8961: \"Aquila audax\",\n    8962: \"Aquila chrysaetos\",\n    8963: \"Circus\",\n    8964: \"Circus aeruginosus\",\n    8965: \"Gyps\",\n    8966: \"Gyps coprotheres\",\n    8967: \"Gyps rueppellii\",\n    8968: \"Haliaeetus\",\n    8969: \"Haliaeetus albicilla\",\n    8970: \"Haliastur\",\n    8971: \"Haliastur indus\",\n    8972: \"Polyboroides\",\n    8973: \"Polyboroides radiatus\",\n    8974: \"Trigonoceps\",\n    8975: \"Trigonoceps occipitalis\",\n    8976: \"Galliformes\",\n    8977: \"Megapodiidae\",\n    8978: \"Megapodius\",\n    8979: \"Megapodius freycinet\",\n    8980: \"Leipoa\",\n    8981: \"Leipoa ocellata\",\n    8982: \"Cracidae\",\n    8983: \"Ortalis\",\n    8984: \"Ortalis vetula\",\n    8985: \"Penelope\",\n    8986: \"Penelope jacucaca\",\n    8987: \"Penelope superciliaris\",\n    8988: \"Aburria\",\n    8990: \"Numididae\",\n    8991: \"Acryllium\",\n    8992: \"Acryllium vulturinum\",\n    8993: \"Guttera\",\n    8994: \"Guttera pucherani\",\n    8995: \"Numida\",\n    8996: \"Numida meleagris\",\n    8999: \"Bonasa\",\n    9000: \"Bonasa umbellus\",\n    9001: \"Centrocercus\",\n    9002: \"Centrocercus urophasianus\",\n    9003: \"Tympanuchus\",\n    9004: \"Tympanuchus cupido\",\n    9005: \"Phasianidae\",\n    9006: \"Phasianidae gen. sp.\",\n    9008: \"Callipepla\",\n    9009: \"Callipepla squamata\",\n    9010: \"Callipepla squamata castanogastris\",\n    9011: \"Callipepla squamata pallida\",\n    9013: \"Colinus\",\n    9014: \"Colinus virginianus\",\n    9016: \"Cyrtonyx\",\n    9017: \"Cyrtonyx montezumae\",\n    9018: \"Francolinus\",\n    9019: \"Francolinus pondicerianus\",\n    9020: \"Francolinus afer\",\n    9021: \"Francolinus coqui\",\n    9022: \"Francolinus erckelii\",\n    9023: \"Francolinus francolinus\",\n    9027: \"Oreortyx\",\n    9029: \"Oreortyx pictus\",\n    9030: \"Gallus\",\n    9031: \"Gallus gallus\",\n    9032: \"Gallus lafayetii\",\n    9033: \"Gallus sonneratii\",\n    9034: \"Gallus varius\",\n    9036: \"Gallus sp.\",\n    9039: \"Lophophorus\",\n    9040: \"Lophophorus impejanus\",\n    9041: \"Lophura\",\n    9042: \"Lophura bulweri\",\n    9043: \"Lophura edwardsi\",\n    9044: \"Lophura ignita\",\n    9046: \"Lophura nycthemera\",\n    9048: \"Pavo\",\n    9049: \"Pavo cristatus\",\n    9050: \"Pavo muticus\",\n    9051: \"Perdix\",\n    9052: \"Perdix perdix\",\n    9053: \"Phasianus\",\n    9054: \"Phasianus colchicus\",\n    9055: \"Phasianus versicolor\",\n    9056: \"Phasianus sp.\",\n    9057: \"Phasianus colchicus colchicus\",\n    9058: \"Polyplectron\",\n    9059: \"Polyplectron bicalcaratum\",\n    9060: \"Pucrasia\",\n    9061: \"Pucrasia macrolopha\",\n    9062: \"Syrmaticus\",\n    9063: \"Syrmaticus ellioti\",\n    9064: \"Syrmaticus humiae\",\n    9065: \"Syrmaticus mikado\",\n    9066: \"Syrmaticus reevesii\",\n    9067: \"Syrmaticus soemmerringii\",\n    9069: \"Tragopan\",\n    9070: \"Tragopan satyra\",\n    9071: \"Tragopan temminckii\",\n    9072: \"Phasianinae\",\n    9075: \"Afropavo\",\n    9076: \"Afropavo congensis\",\n    9077: \"Alectoris\",\n    9078: \"Alectoris chukar\",\n    9079: \"Alectoris rufa\",\n    9080: \"Argusianus\",\n    9081: \"Argusianus argus\",\n    9082: \"Bambusicola\",\n    9083: \"Bambusicola thoracicus\",\n    9084: \"Catreus\",\n    9085: \"Catreus wallichii\",\n    9087: \"Chrysolophus\",\n    9088: \"Chrysolophus amherstiae\",\n    9089: \"Chrysolophus pictus\",\n    9090: \"Coturnix\",\n    9091: \"Coturnix coturnix\",\n    9093: \"Coturnix delegorguei\",\n    9095: \"Crossoptilon\",\n    9096: \"Crossoptilon auritum\",\n    9097: \"Crossoptilon mantchuricum\",\n    9100: \"Agriocharis\",\n    9101: \"Meleagris ocellata\",\n    9102: \"Meleagris\",\n    9103: \"Meleagris gallopavo\",\n    9104: \"Arborophila\",\n    9105: \"Arborophila torqueola\",\n    9108: \"Gruiformes\",\n    9109: \"Gruidae\",\n    9111: \"Anthropoides virgo\",\n    9114: \"Grus\",\n    9115: \"Grus vipio\",\n    9116: \"Grus antigone\",\n    9117: \"Grus americana\",\n    9118: \"Grus carunculatus\",\n    9119: \"Rallidae\",\n    9120: \"Fulica\",\n    9121: \"Fulica atra\",\n    9122: \"Gallinula\",\n    9123: \"Gallinula chloropus\",\n    9124: \"Gallirallus\",\n    9125: \"Gallirallus australis\",\n    9126: \"Passeriformes\",\n    9127: \"Cotingidae\",\n    9128: \"Ampelion\",\n    9131: \"Gymnorhina\",\n    9132: \"Gymnorhina tibicen\",\n    9133: \"Fringillidae\",\n    9134: \"Serinus\",\n    9135: \"Serinus canaria\",\n    9136: \"Furnariidae\",\n    9137: \"Asthenes\",\n    9138: \"Asthenes dorbignyi\",\n    9140: \"Thripophaga\",\n    9143: \"Corcoracidae\",\n    9144: \"Corcorax\",\n    9145: \"Corcorax melanorhamphos\",\n    9146: \"Meliphagidae\",\n    9147: \"Ptiloprora\",\n    9148: \"Ptiloprora plumbea\",\n    9149: \"Paradisaeidae\",\n    9150: \"Epimachus\",\n    9151: \"Epimachus albertisi\",\n    9153: \"Paridae\",\n    9154: \"Parus\",\n    9157: \"Parus major\",\n    9158: \"Passeridae\",\n    9159: \"Passer\",\n    9160: \"Passer montanus\",\n    9161: \"Pittidae\",\n    9162: \"Pitta\",\n    9163: \"Pitta sordida\",\n    9164: \"Ptilonorhynchidae\",\n    9165: \"Amblyornis\",\n    9166: \"Amblyornis macgregoriae\",\n    9167: \"Rhinocryptidae\",\n    9168: \"Scytalopus\",\n    9169: \"Scytalopus magellanicus\",\n    9170: \"Sturnidae\",\n    9171: \"Sturnus\",\n    9172: \"Sturnus vulgaris\",\n    9173: \"Timaliidae\",\n    9174: \"Pomatostomus\",\n    9175: \"Pomatostomus isidorei\",\n    9176: \"Pomatostomus ruficeps\",\n    9177: \"Pomatostomus superciliosus\",\n    9178: \"Pomatostomus temporalis\",\n    9180: \"Pomatostomus halli\",\n    9181: \"Phylloscopus\",\n    9182: \"Phylloscopus trochilus\",\n    9183: \"Turdidae\",\n    9184: \"Catharus\",\n    9185: \"Catharus guttatus\",\n    9186: \"Turdus\",\n    9187: \"Turdus merula\",\n    9188: \"Turdus migratorius\",\n    9190: \"Agelaius\",\n    9191: \"Agelaius tricolor\",\n    9193: \"Laniidae\",\n    9194: \"Laniarius\",\n    9195: \"Laniarius aethiopicus\",\n    9196: \"Laniarius barbarus\",\n    9198: \"Laniarius luehderi\",\n    9199: \"Laniarius ruficeps rufinuchalis\",\n    9200: \"Laniarius turatii\",\n    9201: \"Laniarius ruficeps\",\n    9202: \"Telophorus\",\n    9204: \"Telophorus bocagei\",\n    9205: \"Pelecaniformes\",\n    9206: \"Phalacrocoracidae\",\n    9207: \"Phalacrocorax\",\n    9208: \"Leucocarbo albiventer\",\n    9209: \"Phalacrocorax carbo\",\n    9210: \"Phalacrocorax sulcirostris\",\n    9211: \"Anhingidae\",\n    9212: \"Anhinga\",\n    9213: \"Anhinga novaehollandiae\",\n    9214: \"Phoenicopteriformes\",\n    9215: \"Phoenicopteridae\",\n    9216: \"Phoenicopterus\",\n    9217: \"Phoenicopterus ruber\",\n    9218: \"Phoenicopterus ruber ruber\",\n    9219: \"Piciformes\",\n    9220: \"Picidae\",\n    9221: \"Colaptes\",\n    9222: \"Colaptes rupicola\",\n    9223: \"Psittaciformes\",\n    9224: \"Psittacidae\",\n    9225: \"Ara\",\n    9226: \"Ara ararauna\",\n    9227: \"Psittacula\",\n    9228: \"Psittacula krameri\",\n    9230: \"Sphenisciformes\",\n    9231: \"Spheniscidae\",\n    9232: \"Aptenodytes\",\n    9233: \"Aptenodytes forsteri\",\n    9234: \"Aptenodytes patagonicus\",\n    9235: \"Eudyptes\",\n    9237: \"Pygoscelis\",\n    9238: \"Pygoscelis adeliae\",\n    9239: \"Spheniscus\",\n    9240: \"Spheniscus humboldti\",\n    9242: \"Trochilidae\",\n    9243: \"Calypte\",\n    9244: \"Calypte anna\",\n    9246: \"Turnicidae\",\n    9247: \"Turnix\",\n    9248: \"Turnix sylvaticus\",\n    9251: \"Podilymbus\",\n    9252: \"Podilymbus podiceps\",\n    9254: \"Prototheria\",\n    9255: \"Monotremata\",\n    9256: \"Ornithorhynchidae\",\n    9257: \"Ornithorhynchus\",\n    9258: \"Ornithorhynchus anatinus\",\n    9259: \"Tachyglossidae\",\n    9260: \"Tachyglossus\",\n    9261: \"Tachyglossus aculeatus\",\n    9263: \"Metatheria\",\n    9265: \"Didelphidae\",\n    9266: \"Didelphis\",\n    9267: \"Didelphis virginiana\",\n    9268: \"Didelphis marsupialis\",\n    9269: \"Marmosa\",\n    9271: \"Philander\",\n    9272: \"Philander opossum\",\n    9273: \"Thylacinidae\",\n    9274: \"Thylacinus\",\n    9275: \"Thylacinus cynocephalus\",\n    9277: \"Dasyuridae\",\n    9278: \"Dasyurus\",\n    9279: \"Dasyurus viverrinus\",\n    9280: \"Dasyurus hallucatus\",\n    9281: \"Dasyurus maculatus\",\n    9282: \"Antechinus\",\n    9283: \"Antechinus stuartii\",\n    9284: \"Antechinus swainsonii\",\n    9286: \"Dasykaluta\",\n    9288: \"Murexia\",\n    9290: \"Parantechinus\",\n    9291: \"Parantechinus apicalis\",\n    9292: \"Phascogale\",\n    9293: \"Phascogale tapoatafa\",\n    9294: \"Phascolosorex\",\n    9295: \"Phascolosorex dorsalis\",\n    9296: \"Planigale\",\n    9297: \"Planigale maculata\",\n    9298: \"Pseudantechinus\",\n    9299: \"Pseudantechinus macdonnellensis\",\n    9300: \"Sminthopsis\",\n    9301: \"Sminthopsis crassicaudata\",\n    9302: \"Sminthopsis macroura\",\n    9304: \"Sarcophilus\",\n    9305: \"Sarcophilus harrisii\",\n    9307: \"Macropodidae\",\n    9309: \"Potorous\",\n    9310: \"Potorous tridactylus\",\n    9312: \"Macropus\",\n    9313: \"Notamacropus agilis\",\n    9314: \"Osphranter antilopinus\",\n    9315: \"Notamacropus eugenii\",\n    9316: \"Macropus fuliginosus\",\n    9317: \"Macropus giganteus\",\n    9318: \"Notamacropus parryi\",\n    9319: \"Osphranter robustus\",\n    9321: \"Osphranter rufus\",\n    9322: \"Macropus sp.\",\n    9323: \"Osphranter bernardus\",\n    9324: \"Petrogale\",\n    9325: \"Petrogale xanthopus\",\n    9326: \"Thylogale\",\n    9327: \"Thylogale billardierii\",\n    9328: \"Thylogale stigmatica\",\n    9329: \"Wallabia\",\n    9330: \"Wallabia bicolor\",\n    9331: \"Petauridae\",\n    9332: \"Pseudocheirus\",\n    9333: \"Pseudocheirus peregrinus\",\n    9335: \"Phalangeridae\",\n    9336: \"Trichosurus\",\n    9337: \"Trichosurus vulpecula\",\n    9338: \"Vombatidae\",\n    9342: \"Peramelidae\",\n    9343: \"Perameles\",\n    9344: \"Perameles nasuta\",\n    9347: \"Eutheria\",\n    9348: \"Xenarthra\",\n    9349: \"Myrmecophagidae\",\n    9350: \"Tamandua\",\n    9351: \"Tamandua mexicana\",\n    9352: \"Bradypodidae\",\n    9353: \"Bradypus\",\n    9354: \"Bradypus tridactylus\",\n    9355: \"Bradypus variegatus\",\n    9357: \"Choloepus\",\n    9358: \"Choloepus hoffmanni\",\n    9359: \"Dasypodidae\",\n    9360: \"Dasypus\",\n    9361: \"Dasypus novemcinctus\",\n    9362: \"Eulipotyphla\",\n    9363: \"Erinaceidae\",\n    9364: \"Erinaceus\",\n    9365: \"Erinaceus europaeus\",\n    9366: \"Galericinae\",\n    9367: \"Atelerix\",\n    9368: \"Atelerix albiventris\",\n    9369: \"Tenrecidae\",\n    9370: \"Echinops\",\n    9371: \"Echinops telfairi\",\n    9372: \"Echinops exaltatus\",\n    9373: \"Talpidae\",\n    9374: \"Talpa\",\n    9375: \"Talpa europaea\",\n    9376: \"Soricidae\",\n    9377: \"Suncus\",\n    9378: \"Suncus murinus\",\n    9379: \"Sorex\",\n    9380: \"Sorex cinereus acadicus\",\n    9381: \"Sorex cinereus cinereus\",\n    9382: \"Sorex cinereus miscix\",\n    9383: \"Sorex haydeni\",\n    9384: \"Sorex hoyi\",\n    9386: \"Blarina\",\n    9387: \"Blarina brevicauda\",\n    9389: \"Chrysochloridae\",\n    9390: \"Amblysomus\",\n    9391: \"Amblysomus hottentotus\",\n    9392: \"Scandentia\",\n    9393: \"Tupaiidae\",\n    9394: \"Tupaia\",\n    9395: \"Tupaia glis\",\n    9397: \"Chiroptera\",\n    9398: \"Pteropodidae\",\n    9399: \"Cynopterus\",\n    9400: \"Cynopterus sphinx\",\n    9401: \"Pteropus\",\n    9402: \"Pteropus alecto\",\n    9403: \"Pteropus poliocephalus\",\n    9404: \"Pteropus temminckii\",\n    9405: \"Pteropus hypomelanus\",\n    9406: \"Rousettus\",\n    9407: \"Rousettus aegyptiacus\",\n    9408: \"Rousettus leschenaultii\",\n    9409: \"Megadermatidae\",\n    9410: \"Macroderma\",\n    9411: \"Macroderma gigas\",\n    9412: \"Megaderma\",\n    9413: \"Megaderma lyra\",\n    9414: \"Megaderma spasma\",\n    9415: \"Phyllostomidae\",\n    9416: \"Artibeus\",\n    9417: \"Artibeus jamaicensis\",\n    9418: \"Macrotus\",\n    9419: \"Macrotus californicus\",\n    9420: \"Brachyphylla\",\n    9421: \"Brachyphylla cavernarum\",\n    9422: \"Phyllostomus\",\n    9423: \"Phyllostomus hastatus\",\n    9425: \"Tonatia\",\n    9426: \"Tonatia bidens\",\n    9429: \"Desmodus\",\n    9430: \"Desmodus rotundus\",\n    9431: \"Vespertilionidae\",\n    9432: \"Miniopterus\",\n    9433: \"Miniopterus schreibersii\",\n    9434: \"Myotis\",\n    9435: \"Myotis velifer\",\n    9436: \"Molossidae\",\n    9437: \"Tadarida\",\n    9438: \"Tadarida brasiliensis\",\n    9439: \"Antrozous\",\n    9440: \"Antrozous pallidus\",\n    9443: \"Primates\",\n    9445: \"Lemuridae\",\n    9446: \"Lemur\",\n    9447: \"Lemur catta\",\n    9452: \"Lepilemur\",\n    9453: \"Lepilemur mustelinus\",\n    9454: \"Varecia\",\n    9455: \"Varecia variegata\",\n    9456: \"Cynocephalus\",\n    9459: \"Cheirogaleus\",\n    9460: \"Cheirogaleus medius\",\n    9461: \"Lorisidae\",\n    9462: \"Galago\",\n    9463: \"Otolemur crassicaudatus\",\n    9464: \"Galago sp.\",\n    9465: \"Galago senegalensis\",\n    9467: \"Loris\",\n    9468: \"Loris tardigradus\",\n    9469: \"Nycticebus\",\n    9470: \"Nycticebus coucang\",\n    9471: \"Perodicticus\",\n    9472: \"Perodicticus potto\",\n    9473: \"Perodicticus potto edwarsi\",\n    9475: \"Tarsiidae\",\n    9476: \"Tarsius\",\n    9477: \"Cephalopachus bancanus\",\n    9479: \"Platyrrhini\",\n    9480: \"Callitrichinae\",\n    9481: \"Callithrix\",\n    9482: \"Mico argentatus\",\n    9483: \"Callithrix jacchus\",\n    9485: \"Callithrix sp.\",\n    9486: \"Saguinus\",\n    9487: \"Leontocebus fuscicollis\",\n    9488: \"Saguinus mystax\",\n    9489: \"Leontocebus nigricollis\",\n    9490: \"Saguinus oedipus\",\n    9491: \"Saguinus imperator\",\n    9493: \"Callithrix pygmaea\",\n    9494: \"Callimico\",\n    9495: \"Callimico goeldii\",\n    9498: \"Cebidae\",\n    9499: \"Alouatta\",\n    9502: \"Alouatta caraya\",\n    9503: \"Alouatta seniculus\",\n    9504: \"Aotus\",\n    9505: \"Aotus trivirgatus\",\n    9506: \"Ateles\",\n    9507: \"Ateles belzebuth\",\n    9508: \"Ateles fusciceps\",\n    9509: \"Ateles geoffroyi\",\n    9510: \"Ateles paniscus\",\n    9511: \"Ateles sp.\",\n    9513: \"Cebus\",\n    9514: \"Cebus albifrons\",\n    9515: \"Sapajus apella\",\n    9516: \"Cebus capucinus\",\n    9517: \"Cebus sp.\",\n    9518: \"Lagothrix\",\n    9519: \"Lagothrix lagotricha\",\n    9520: \"Saimiri\",\n    9521: \"Saimiri sciureus\",\n    9522: \"Callicebus\",\n    9523: \"Plecturocebus moloch\",\n    9524: \"Chiropotes\",\n    9525: \"Chiropotes satanas\",\n    9526: \"Catarrhini\",\n    9527: \"Cercopithecidae\",\n    9528: \"Cercopithecinae\",\n    9529: \"Cercocebus\",\n    9530: \"Cercocebus torquatus\",\n    9531: \"Cercocebus atys\",\n    9532: \"Cercocebus galeritus\",\n    9533: \"Cercopithecus\",\n    9534: \"Chlorocebus aethiops\",\n    9535: \"Cercopithecus cephus\",\n    9536: \"Cercopithecus hamlyni\",\n    9537: \"Erythrocebus\",\n    9538: \"Erythrocebus patas\",\n    9539: \"Macaca\",\n    9540: \"Macaca arctoides\",\n    9541: \"Macaca fascicularis\",\n    9542: \"Macaca fuscata\",\n    9543: \"Macaca fuscata fuscata\",\n    9544: \"Macaca mulatta\",\n    9545: \"Macaca nemestrina\",\n    9546: \"Macaca sylvanus\",\n    9548: \"Macaca radiata\",\n    9549: \"Macaca sp.\",\n    9551: \"Macaca assamensis\",\n    9552: \"Macaca sinica\",\n    9553: \"Macaca speciosa\",\n    9554: \"Papio\",\n    9555: \"Papio anubis\",\n    9556: \"Papio cynocephalus\",\n    9557: \"Papio hamadryas\",\n    9561: \"Mandrillus sphinx\",\n    9562: \"Papio hamadryas hamadryas\",\n    9564: \"Theropithecus\",\n    9565: \"Theropithecus gelada\",\n    9567: \"Mandrillus\",\n    9568: \"Mandrillus leucophaeus\",\n    9569: \"Colobinae\",\n    9570: \"Colobus\",\n    9572: \"Colobus polykomos\",\n    9573: \"Presbytis\",\n    9576: \"Cercopithecidae gen. sp.\",\n    9577: \"Hylobatidae\",\n    9578: \"Hylobates\",\n    9579: \"Hylobates agilis\",\n    9580: \"Hylobates lar\",\n    9581: \"Hylobates sp.\",\n    9583: \"Hylobates agilis unko\",\n    9586: \"Nomascus siki\",\n    9587: \"Hylobates klossii\",\n    9588: \"Hylobates muelleri\",\n    9589: \"Hylobates pileatus\",\n    9590: \"Symphalangus syndactylus\",\n    9592: \"Gorilla\",\n    9593: \"Gorilla gorilla\",\n    9595: \"Gorilla gorilla gorilla\",\n    9596: \"Pan\",\n    9597: \"Pan paniscus\",\n    9598: \"Pan troglodytes\",\n    9599: \"Pongo\",\n    9600: \"Pongo pygmaeus\",\n    9601: \"Pongo abelii\",\n    9602: \"Pongo pygmaeus pygmaeus\",\n    9603: \"Pongo sp.\",\n    9604: \"Hominidae\",\n    9605: \"Homo\",\n    9606: \"Homo sapiens\",\n    9608: \"Canidae\",\n    9611: \"Canis\",\n    9612: \"Canis lupus\",\n    9614: \"Canis latrans\",\n    9615: \"Canis lupus familiaris\",\n    9616: \"Canis sp.\",\n    9619: \"Dusicyon\",\n    9620: \"Cerdocyon thous\",\n    9621: \"Lycaon\",\n    9622: \"Lycaon pictus\",\n    9623: \"Otocyon\",\n    9624: \"Otocyon megalotis\",\n    9625: \"Vulpes\",\n    9626: \"Vulpes chama\",\n    9627: \"Vulpes vulpes\",\n    9629: \"Vulpes corsac\",\n    9630: \"Vulpes macrotis\",\n    9631: \"Vulpes velox\",\n    9632: \"Ursidae\",\n    9633: \"Helarctos\",\n    9634: \"Helarctos malayanus\",\n    9635: \"Melursus\",\n    9636: \"Melursus ursinus\",\n    9637: \"Tremarctos\",\n    9638: \"Tremarctos ornatus\",\n    9639: \"Ursus\",\n    9641: \"Ursus sp.\",\n    9642: \"Ursus thibetanus\",\n    9643: \"Ursus americanus\",\n    9644: \"Ursus arctos\",\n    9645: \"Ailuropoda\",\n    9646: \"Ailuropoda melanoleuca\",\n    9647: \"Procyonidae\",\n    9648: \"Ailurus\",\n    9649: \"Ailurus fulgens\",\n    9650: \"Nasua\",\n    9651: \"Nasua nasua\",\n    9652: \"Nasua nasua rufa\",\n    9653: \"Procyon\",\n    9654: \"Procyon lotor\",\n    9655: \"Mustelidae\",\n    9656: \"Lutra\",\n    9657: \"Lutra lutra\",\n    9658: \"Martes\",\n    9659: \"Martes foina\",\n    9660: \"Martes americana\",\n    9661: \"Meles\",\n    9662: \"Meles meles\",\n    9663: \"Mellivora\",\n    9664: \"Mellivora capensis\",\n    9665: \"Mustela\",\n    9666: \"Mustela lutreola\",\n    9668: \"Mustela putorius\",\n    9669: \"Mustela putorius furo\",\n    9671: \"Pteronura\",\n    9672: \"Pteronura brasiliensis\",\n    9673: \"Viverridae\",\n    9674: \"Paguma\",\n    9675: \"Paguma larvata\",\n    9676: \"Hyaenidae\",\n    9677: \"Crocuta\",\n    9678: \"Crocuta crocuta\",\n    9679: \"Proteles\",\n    9680: \"Proteles cristata\",\n    9681: \"Felidae\",\n    9682: \"Felis\",\n    9683: \"Felis silvestris\",\n    9685: \"Felis catus\",\n    9687: \"Felis sp.\",\n    9688: \"Panthera\",\n    9689: \"Panthera leo\",\n    9690: \"Panthera onca\",\n    9691: \"Panthera pardus\",\n    9692: \"Panthera pardus orientalis\",\n    9693: \"Panthera pardus saxicolor\",\n    9694: \"Panthera tigris\",\n    9695: \"Panthera tigris sumatrae\",\n    9696: \"Puma concolor\",\n    9697: \"Herpestidae\",\n    9699: \"Herpestes\",\n    9700: \"Herpestes ichneumon\",\n    9702: \"Otariidae\",\n    9703: \"Zalophus\",\n    9704: \"Zalophus californianus\",\n    9705: \"Odobenidae\",\n    9706: \"Odobenus\",\n    9707: \"Odobenus rosmarus\",\n    9708: \"Odobenus rosmarus divergens\",\n    9709: \"Phocidae\",\n    9710: \"Halichoerus\",\n    9711: \"Halichoerus grypus\",\n    9712: \"Leptonychotes\",\n    9713: \"Leptonychotes weddellii\",\n    9714: \"Mirounga\",\n    9715: \"Mirounga leonina\",\n    9716: \"Mirounga angustirostris\",\n    9717: \"Phoca\",\n    9718: \"Pusa hispida\",\n    9719: \"Pusa sibirica\",\n    9720: \"Phoca vitulina\",\n    9721: \"Cetacea\",\n    9722: \"Odontoceti\",\n    9723: \"Platanistidae\",\n    9724: \"Inia\",\n    9725: \"Inia geoffrensis\",\n    9726: \"Delphinidae\",\n    9727: \"Delphinus\",\n    9728: \"Delphinus delphis\",\n    9729: \"Globicephala\",\n    9731: \"Globicephala melas\",\n    9732: \"Orcinus\",\n    9733: \"Orcinus orca\",\n    9734: \"Stenella\",\n    9735: \"Stenella attenuata\",\n    9736: \"Stenella longirostris\",\n    9737: \"Stenella coeruleoalba\",\n    9738: \"Tursiops\",\n    9739: \"Tursiops truncatus\",\n    9740: \"Phocoenidae\",\n    9741: \"Phocoena\",\n    9742: \"Phocoena phocoena\",\n    9743: \"Phocoenoides\",\n    9744: \"Phocoenoides dalli\",\n    9745: \"Phocoenoides dalli dalli\",\n    9747: \"Monodontidae\",\n    9748: \"Delphinapterus\",\n    9749: \"Delphinapterus leucas\",\n    9750: \"Physeteridae\",\n    9751: \"Kogia\",\n    9752: \"Kogia sima\",\n    9753: \"Physeter\",\n    9755: \"Physeter catodon\",\n    9756: \"Ziphiidae\",\n    9757: \"Mesoplodon\",\n    9758: \"Mesoplodon carlhubbsi\",\n    9759: \"Ziphius\",\n    9760: \"Ziphius cavirostris\",\n    9761: \"Mysticeti\",\n    9762: \"Eschrichtiidae\",\n    9763: \"Eschrichtius\",\n    9764: \"Eschrichtius robustus\",\n    9765: \"Balaenopteridae\",\n    9766: \"Balaenoptera\",\n    9767: \"Balaenoptera acutorostrata\",\n    9768: \"Balaenoptera borealis\",\n    9769: \"Balaenoptera edeni\",\n    9770: \"Balaenoptera physalus\",\n    9771: \"Balaenoptera musculus\",\n    9772: \"Megaptera\",\n    9773: \"Megaptera novaeangliae\",\n    9774: \"Sirenia\",\n    9775: \"Trichechidae\",\n    9776: \"Trichechus\",\n    9777: \"Trichechus inunguis\",\n    9778: \"Trichechus manatus\",\n    9779: \"Proboscidea\",\n    9780: \"Elephantidae\",\n    9781: \"Elephantidae gen. sp.\",\n    9782: \"Elephas\",\n    9783: \"Elephas maximus\",\n    9784: \"Loxodonta\",\n    9785: \"Loxodonta africana\",\n    9786: \"Proboscidea louisiana\",\n    9787: \"Perissodactyla\",\n    9788: \"Equidae\",\n    9789: \"Equus\",\n    9790: \"Equus burchellii\",\n    9791: \"Equus zebra\",\n    9792: \"Equus grevyi\",\n    9793: \"Equus asinus\",\n    9794: \"Equus hemionus\",\n    9796: \"Equus caballus\",\n    9798: \"Equus przewalskii\",\n    9799: \"Tapiridae\",\n    9800: \"Tapirus\",\n    9801: \"Tapirus terrestris\",\n    9802: \"Tapirus indicus\",\n    9803: \"Rhinocerotidae\",\n    9804: \"Diceros\",\n    9805: \"Diceros bicornis\",\n    9806: \"Ceratotherium\",\n    9807: \"Ceratotherium simum\",\n    9808: \"Rhinoceros\",\n    9809: \"Rhinoceros unicornis\",\n    9810: \"Hyracoidea\",\n    9811: \"Procaviidae\",\n    9812: \"Procavia\",\n    9813: \"Procavia capensis\",\n    9814: \"Procavia capensis habessinica\",\n    9815: \"Tubulidentata\",\n    9816: \"Orycteropodidae\",\n    9817: \"Orycteropus\",\n    9818: \"Orycteropus afer\",\n    9821: \"Suidae\",\n    9822: \"Sus\",\n    9823: \"Sus scrofa\",\n    9825: \"Sus scrofa domesticus\",\n    9826: \"Sus sp.\",\n    9827: \"Tayassuidae\",\n    9828: \"Tayassu\",\n    9829: \"Pecari tajacu\",\n    9831: \"Hippopotamidae\",\n    9832: \"Hippopotamus\",\n    9833: \"Hippopotamus amphibius\",\n    9834: \"Tylopoda\",\n    9835: \"Camelidae\",\n    9836: \"Camelus\",\n    9837: \"Camelus bactrianus\",\n    9838: \"Camelus dromedarius\",\n    9839: \"Lama\",\n    9840: \"Lama guanicoe\",\n    9843: \"Vicugna vicugna\",\n    9844: \"Lama glama\",\n    9845: \"Ruminantia\",\n    9846: \"Tragulidae\",\n    9847: \"Tragulus\",\n    9848: \"Tragulus napu\",\n    9849: \"Tragulus javanicus\",\n    9850: \"Cervidae\",\n    9851: \"Alces\",\n    9852: \"Alces alces\",\n    9853: \"Alces alces alces\",\n    9855: \"Axis\",\n    9857: \"Capreolus\",\n    9858: \"Capreolus capreolus\",\n    9859: \"Cervus\",\n    9860: \"Cervus elaphus\",\n    9861: \"Cervus canadensis canadensis\",\n    9863: \"Cervus nippon\",\n    9864: \"Cervus canadensis nelsoni\",\n    9865: \"Cervus elaphus xanthopygus\",\n    9867: \"Dama\",\n    9869: \"Rangifer\",\n    9870: \"Rangifer tarandus\",\n    9871: \"Odocoileus\",\n    9872: \"Odocoileus hemionus\",\n    9873: \"Odocoileus hemionus columbianus\",\n    9874: \"Odocoileus virginianus\",\n    9875: \"Odocoileus virginianus virginianus\",\n    9876: \"Odocoileus hemionus crooki\",\n    9877: \"Odocoileus hemionus hemionus\",\n    9878: \"Odocoileus hemionus sitkensis\",\n    9879: \"Odocoileus virginianus dakotensis\",\n    9880: \"Odocoileus virginianus texanus\",\n    9881: \"Odocoileinae\",\n    9882: \"Hydropotes\",\n    9883: \"Hydropotes inermis\",\n    9885: \"Muntiacus\",\n    9886: \"Muntiacus reevesi\",\n    9887: \"Muntiacus vaginalis\",\n    9888: \"Muntiacus muntjak\",\n    9889: \"Antilocapridae\",\n    9890: \"Antilocapra\",\n    9891: \"Antilocapra americana\",\n    9892: \"Giraffidae\",\n    9893: \"Giraffa\",\n    9894: \"Giraffa camelopardalis\",\n    9895: \"Bovidae\",\n    9896: \"Aepyceros\",\n    9897: \"Aepyceros melampus\",\n    9898: \"Ammotragus\",\n    9899: \"Ammotragus lervia\",\n    9900: \"Bison\",\n    9901: \"Bison bison\",\n    9902: \"Bison bonasus\",\n    9903: \"Bos\",\n    9904: \"Bos gaurus\",\n    9906: \"Bos javanicus\",\n    9909: \"Bos primigenius\",\n    9913: \"Bos taurus\",\n    9915: \"Bos indicus\",\n    9916: \"Boselaphus\",\n    9917: \"Boselaphus tragocamelus\",\n    9918: \"Bubalus\",\n    9922: \"Capra\",\n    9923: \"Capra aegagrus\",\n    9925: \"Capra hircus\",\n    9926: \"Connochaetes\",\n    9927: \"Connochaetes taurinus\",\n    9928: \"Damaliscus\",\n    9929: \"Damaliscus lunatus\",\n    9930: \"Damaliscus lunatus korrigum\",\n    9931: \"Damaliscus pygargus\",\n    9933: \"Gazella\",\n    9935: \"Ovis\",\n    9938: \"Ovis aries musimon\",\n    9939: \"Ovis sp.\",\n    9940: \"Ovis aries\",\n    9943: \"Ovis dalli\",\n    9944: \"Tragelaphus\",\n    9945: \"Tragelaphus oryx\",\n    9946: \"Tragelaphus strepsiceros\",\n    9947: \"Tragelaphus imberbis\",\n    9948: \"Antilopinae\",\n    9950: \"Madoqua\",\n    9952: \"Cephalophinae\",\n    9954: \"Cephalophus\",\n    9957: \"Oryx\",\n    9958: \"Oryx gazella\",\n    9959: \"Hippotraginae\",\n    9961: \"Kobus\",\n    9962: \"Kobus ellipsiprymnus\",\n    9963: \"Caprinae\",\n    9965: \"Capricornis\",\n    9966: \"Capricornis crispus\",\n    9969: \"Syncerus\",\n    9970: \"Syncerus caffer\",\n    9971: \"Pholidota\",\n    9972: \"Manidae\",\n    9973: \"Manis\",\n    9974: \"Manis javanica\",\n    9975: \"Lagomorpha\",\n    9976: \"Ochotonidae\",\n    9977: \"Ochotona\",\n    9978: \"Ochotona princeps\",\n    9979: \"Leporidae\",\n    9980: \"Lepus\",\n    9981: \"Lepus capensis\",\n    9983: \"Lepus europaeus\",\n    9984: \"Oryctolagus\",\n    9986: \"Oryctolagus cuniculus\",\n    9987: \"Sylvilagus\",\n    9988: \"Sylvilagus floridanus\",\n    9989: \"Rodentia\",\n    9991: \"Sciurinae\",\n    9992: \"Marmota\",\n    9993: \"Marmota marmota\",\n    9994: \"Marmota marmota marmota\",\n    9995: \"Marmota monax\",\n    9996: \"Spermophilus\",\n    9997: \"Spermophilus citellus\",\n    9999: \"Urocitellus parryii\",\n    10001: \"Sciurus\",\n    10002: \"Sciurus aberti aberti\",\n    10003: \"Sciurus aberti barberi\",\n    10004: \"Sciurus aberti chuscensis\",\n    10005: \"Sciurus aberti ferreus\",\n    10006: \"Sciurus aberti kaibabensis\",\n    10007: \"Sciurus aberti\",\n    10008: \"Tamiasciurus\",\n    10009: \"Tamiasciurus hudsonicus\",\n    10010: \"Geomyidae\",\n    10011: \"Thomomys\",\n    10012: \"Thomomys townsendii\",\n    10013: \"Thomomys bottae\",\n    10015: \"Heteromyidae\",\n    10016: \"Dipodomys\",\n    10017: \"Dipodomys californicus\",\n    10018: \"Dipodomys heermanni\",\n    10019: \"Dipodomys panamintinus\",\n    10020: \"Dipodomys ordii\",\n    10021: \"Pedetidae\",\n    10022: \"Pedetes\",\n    10023: \"Pedetes capensis\",\n    10026: \"Cricetinae\",\n    10028: \"Cricetulus\",\n    10029: \"Cricetulus griseus\",\n    10030: \"Cricetulus longicaudatus\",\n    10031: \"Cricetulus sp.\",\n    10032: \"Cricetulus migratorius\",\n    10033: \"Cricetus\",\n    10034: \"Cricetus cricetus\",\n    10035: \"Mesocricetus\",\n    10036: \"Mesocricetus auratus\",\n    10037: \"Mesocricetus brandti\",\n    10038: \"Mesocricetus sp.\",\n    10040: \"Peromyscus\",\n    10041: \"Peromyscus leucopus\",\n    10042: \"Peromyscus maniculatus\",\n    10043: \"Phodopus\",\n    10044: \"Phodopus sungorus\",\n    10045: \"Gerbillinae\",\n    10046: \"Meriones\",\n    10047: \"Meriones unguiculatus\",\n    10049: \"Arvicola\",\n    10053: \"Microtus\",\n    10054: \"Microtus xanthognathus\",\n    10055: \"Microtus chrotorrhinus\",\n    10058: \"Microtus pennsylvanicus\",\n    10059: \"Ondatra\",\n    10060: \"Ondatra zibethicus\",\n    10061: \"Spalacinae\",\n    10062: \"Spalax\",\n    10066: \"Muridae\",\n    10067: \"Acomys\",\n    10068: \"Acomys cahirinus\",\n    10069: \"Akodon\",\n    10070: \"Akodon aerosus\",\n    10072: \"Akodon boliviensis\",\n    10073: \"Akodon juninensis\",\n    10074: \"Akodon kofordi\",\n    10075: \"Akodon mollis\",\n    10076: \"Akodon lutescens puer\",\n    10077: \"Akodon subfuscus\",\n    10078: \"Akodon torques\",\n    10080: \"Bolomys\",\n    10081: \"Bolomys amoenus\",\n    10084: \"Cricetomys\",\n    10085: \"Cricetomys gambianus\",\n    10087: \"Akodon mimus\",\n    10088: \"Mus\",\n    10089: \"Mus caroli\",\n    10090: \"Mus musculus\",\n    10091: \"Mus musculus castaneus\",\n    10092: \"Mus musculus domesticus\",\n    10093: \"Mus pahari\",\n    10094: \"Mus saxicola\",\n    10095: \"Mus sp.\",\n    10096: \"Mus spretus\",\n    10097: \"Mus cervicolor\",\n    10098: \"Mus cookii\",\n    10100: \"Mus macedonicus\",\n    10101: \"Mus platythrix\",\n    10102: \"Mus setulosus\",\n    10103: \"Mus spicilegus\",\n    10105: \"Mus minutoides\",\n    10108: \"Mus abbotti\",\n    10111: \"Praomys\",\n    10112: \"Mastomys natalensis\",\n    10113: \"Praomys daltoni\",\n    10114: \"Rattus\",\n    10115: \"Rattus leucopus\",\n    10116: \"Rattus norvegicus\",\n    10117: \"Rattus rattus\",\n    10118: \"Rattus sp.\",\n    10119: \"Rattus fuscipes\",\n    10120: \"Rattus sordidus\",\n    10121: \"Rattus tunneyi\",\n    10122: \"Rattus villosissimus\",\n    10126: \"Conilurus\",\n    10127: \"Conilurus penicillatus\",\n    10128: \"Apodemus\",\n    10129: \"Apodemus sylvaticus\",\n    10132: \"Calomyscus\",\n    10133: \"Calomyscus sp.\",\n    10135: \"Hystricidae\",\n    10136: \"Hystrix\",\n    10137: \"Hystrix cristata\",\n    10138: \"Hystrix africaeaustralis\",\n    10139: \"Caviidae\",\n    10140: \"Cavia\",\n    10141: \"Cavia porcellus\",\n    10143: \"Cavia sp.\",\n    10144: \"Cavia cutleri\",\n    10145: \"Galea\",\n    10146: \"Galea musteloides\",\n    10147: \"Hydrochaeridae\",\n    10148: \"Hydrochoerus\",\n    10149: \"Hydrochoerus hydrochaeris\",\n    10150: \"Chinchillidae\",\n    10151: \"Chinchilla\",\n    10152: \"Chinchilla chinchilla\",\n    10153: \"Lagostomus\",\n    10154: \"Lagostomus maximus\",\n    10155: \"Myocastoridae\",\n    10156: \"Myocastor\",\n    10157: \"Myocastor coypus\",\n    10158: \"Octodontidae\",\n    10159: \"Octodon\",\n    10160: \"Octodon degus\",\n    10161: \"Echimyidae\",\n    10162: \"Proechimys\",\n    10163: \"Proechimys guairae\",\n    10164: \"Ctenodactylidae\",\n    10165: \"Ctenodactylus\",\n    10166: \"Ctenodactylus gundi\",\n    10167: \"Bathyergidae\",\n    10168: \"Thryonomys\",\n    10169: \"Thryonomys swinderianus\",\n    10170: \"Bathyergus\",\n    10171: \"Bathyergus janetta\",\n    10172: \"Bathyergus suillus\",\n    10173: \"Cryptomys\",\n    10175: \"Cryptomys hottentotus\",\n    10176: \"Georychus\",\n    10177: \"Georychus capensis\",\n    10178: \"Heliophobius\",\n    10179: \"Heliophobius argenteocinereus\",\n    10180: \"Heterocephalus\",\n    10181: \"Heterocephalus glaber\",\n    10182: \"Petromus\",\n    10183: \"Petromus typicus\",\n    10184: \"Castor\",\n    10185: \"Castor fiber\",\n    10186: \"Gerbillus\",\n    10187: \"Gerbillus sp.\",\n    10190: \"Rotifera\",\n    10191: \"Monogononta\",\n    10193: \"Brachionidae\",\n    10194: \"Brachionus\",\n    10195: \"Brachionus plicatilis\",\n    10197: \"Ctenophora\",\n    10199: \"Beroe\",\n    10200: \"Beroe mitrata\",\n    10201: \"Beroe ovata\",\n    10205: \"Bryozoa\",\n    10206: \"Gymnolaemata\",\n    10207: \"Cheilostomatida\",\n    10210: \"Bugulidae\",\n    10211: \"Bugula\",\n    10212: \"Bugula neritina\",\n    10213: \"Mesozoa\",\n    10214: \"Rhombozoa\",\n    10215: \"Dicyemida\",\n    10216: \"Dicyemidae\",\n    10217: \"Dicyema\",\n    10218: \"Dicyema misakiense\",\n    10219: \"Hemichordata\",\n    10220: \"Enteropneusta\",\n    10221: \"Harrimaniidae\",\n    10222: \"Saccoglossus\",\n    10224: \"Saccoglossus kowalevskii\",\n    10226: \"Placozoa\",\n    10227: \"Trichoplax\",\n    10228: \"Trichoplax adhaerens\",\n    10229: \"Chaetognatha\",\n    10230: \"Sagitta\",\n    10231: \"Sagitta elegans\",\n    10232: \"Acanthocephala\",\n    10233: \"Archiacanthocephala\",\n    10234: \"Moniliformida\",\n    10235: \"Moniliformidae\",\n    10236: \"Moniliformis\",\n    10237: \"Moniliformis moniliformis\",\n    10239: \"Viruses\",\n    10240: \"Poxviridae\",\n    10241: \"Chordopoxvirinae\",\n    10242: \"Orthopoxvirus\",\n    10243: \"Cowpox virus\",\n    10244: \"Monkeypox virus\",\n    10245: \"Vaccinia virus\",\n    10246: \"Vaccinia virus LC16MO\",\n    10247: \"Vaccinia virus WR 65-16\",\n    10248: \"Vaccinia virus LC16M8\",\n    10249: \"Vaccinia virus Copenhagen\",\n    10250: \"Vaccinia virus Dairen I\",\n    10251: \"Vaccinia virus IHD-J\",\n    10252: \"Vaccinia virus Lister\",\n    10253: \"Vaccinia virus Tian Tan\",\n    10254: \"Vaccinia virus WR\",\n    10255: \"Variola virus\",\n    10256: \"Raccoonpox virus\",\n    10257: \"Parapoxvirus\",\n    10258: \"Orf virus\",\n    10259: \"Orf virus (strain NZ2)\",\n    10260: \"Avipoxvirus\",\n    10261: \"Fowlpox virus\",\n    10263: \"Fowlpox virus isolate HP-438/Munich\",\n    10264: \"Pigeonpox virus\",\n    10265: \"Capripoxvirus\",\n    10266: \"Sheeppox virus\",\n    10268: \"Sheeppox virus INS-1\",\n    10269: \"Sheeppox virus KS-1\",\n    10270: \"Leporipoxvirus\",\n    10271: \"Rabbit fibroma virus\",\n    10272: \"Rabbit fibroma virus (strain Kasza)\",\n    10273: \"Myxoma virus\",\n    10274: \"Malignant rabbit fibroma virus\",\n    10275: \"Suipoxvirus\",\n    10276: \"Swinepox virus\",\n    10277: \"Swinepox virus (STRAIN KASZA)\",\n    10278: \"Molluscipoxvirus\",\n    10279: \"Molluscum contagiosum virus\",\n    10280: \"Molluscum contagiosum virus subtype 1\",\n    10281: \"Molluscum contagiosum virus subtype 2\",\n    10282: \"Yatapoxvirus\",\n    10283: \"unidentified poxvirus\",\n    10284: \"Entomopoxvirinae\",\n    10286: \"Betaentomopoxvirus\",\n    10288: \"Choristoneura biennis entomopoxvirus\",\n    10290: \"Heliothis armigera entomopoxvirus\",\n    10291: \"unidentified entomopoxvirus\",\n    10292: \"Herpesviridae\",\n    10293: \"Alphaherpesvirinae\",\n    10294: \"Simplexvirus\",\n    10295: \"Bovine alphaherpesvirus 2\",\n    10296: \"Bovine herpesvirus type 2 (strain BMV)\",\n    10297: \"Bovine herpesvirus type 2 (strain BHM-1)\",\n    10298: \"Human alphaherpesvirus 1\",\n    10299: \"Human alphaherpesvirus 1 strain 17\",\n    10300: \"Human alphaherpesvirus 1 strain A44\",\n    10301: \"Human alphaherpesvirus 1 strain Angelotti\",\n    10302: \"Human alphaherpesvirus 1 strain CL101\",\n    10303: \"Human alphaherpesvirus 1 strain HFEM\",\n    10304: \"Human alphaherpesvirus 1 strain F\",\n    10305: \"Human alphaherpesvirus 1 strain HZT\",\n    10306: \"Human alphaherpesvirus 1 strain KOS\",\n    10307: \"Human alphaherpesvirus 1 strain MP\",\n    10308: \"Human alphaherpesvirus 1 strain Patton\",\n    10309: \"Human alphaherpesvirus 1 strain SC16\",\n    10310: \"Human alphaherpesvirus 2\",\n    10312: \"Human herpesvirus 2 strain 186\",\n    10313: \"Human herpesvirus 2 strain 333\",\n    10314: \"Human herpesvirus 2 strain G\",\n    10315: \"Human herpesvirus 2 strain HG52\",\n    10316: \"Human herpesvirus 2 strain SA8\",\n    10317: \"Cercopithecine alphaherpesvirus 2\",\n    10319: \"Varicellovirus\",\n    10320: \"Bovine alphaherpesvirus 1\",\n    10321: \"Bovine herpesvirus type 1.2 strain Q3932\",\n    10322: \"Bovine herpesvirus type 1 strain 6660\",\n    10323: \"Bovine herpesvirus type 1.1 (strain Cooper)\",\n    10324: \"Bovine herpesvirus type 1.1 (strain P8-2)\",\n    10325: \"Macacine alphaherpesvirus 1\",\n    10326: \"Equid alphaherpesvirus 1\",\n    10327: \"Equine herpesvirus type 1 (isolate HSV25A)\",\n    10328: \"Equine herpesvirus type 1 (strain AB1)\",\n    10329: \"Equine herpesvirus type 1 (strain Kentucky A)\",\n    10330: \"Equine herpesvirus type 1 (strain Kentucky D)\",\n    10331: \"Equid alphaherpesvirus 4\",\n    10333: \"Equine herpesvirus type 4 (strain 1942)\",\n    10334: \"Felid alphaherpesvirus 1\",\n    10335: \"Human alphaherpesvirus 3\",\n    10338: \"Human herpesvirus 3 strain Dumas\",\n    10343: \"Infectious laryngotracheitis virus (strain SA-2)\",\n    10344: \"Infectious laryngotracheitis virus (strain Thorne V882)\",\n    10345: \"Suid alphaherpesvirus 1\",\n    10346: \"Suid herpesvirus 1 strain Becker\",\n    10349: \"Suid herpesvirus 1 (strain NIA-3)\",\n    10350: \"Suid herpesvirus 1 (strain Rice)\",\n    10353: \"Saimiriine alphaherpesvirus 1\",\n    10355: \"Bovine herpesvirus 4 (isolate DN-599)\",\n    10357: \"Betaherpesvirinae\",\n    10358: \"Cytomegalovirus\",\n    10359: \"Human betaherpesvirus 5\",\n    10360: \"Human herpesvirus 5 strain AD169\",\n    10361: \"Human herpesvirus 5 strain Colburn\",\n    10362: \"Human herpesvirus 5 strain Eisenhardt\",\n    10363: \"Human herpesvirus 5 strain Towne\",\n    10364: \"Simian cytomegalovirus\",\n    10365: \"Muromegalovirus\",\n    10366: \"Murid betaherpesvirus 1\",\n    10367: \"Murine cytomegalovirus (strain Smith)\",\n    10368: \"Human betaherpesvirus 6\",\n    10369: \"Human herpesvirus 6 (strain GS)\",\n    10370: \"Human herpesvirus 6 (strain Uganda-1102)\",\n    10371: \"Equid gammaherpesvirus 5\",\n    10372: \"Human betaherpesvirus 7\",\n    10373: \"Macaca mulatta cytomegalovirus\",\n    10374: \"Gammaherpesvirinae\",\n    10375: \"Lymphocryptovirus\",\n    10376: \"Human gammaherpesvirus 4\",\n    10377: \"Human herpesvirus 4 strain B95-8\",\n    10378: \"Human herpesvirus 4 strain RAJI\",\n    10379: \"Rhadinovirus\",\n    10380: \"Ateline gammaherpesvirus 2\",\n    10381: \"Saimiriine gammaherpesvirus 2\",\n    10382: \"Herpesvirus saimiri (strain 484-77)\",\n    10383: \"Herpesvirus saimiri (strain 11)\",\n    10384: \"Herpesvirus saimiri (strain 488)\",\n    10385: \"Bovine gammaherpesvirus 4\",\n    10386: \"Gallid alphaherpesvirus 1\",\n    10387: \"Marek's disease herpesvirus type 1 strain BC-1\",\n    10388: \"Marek's disease herpesvirus strain GA\",\n    10389: \"Marek's disease herpesvirus type 1 strain MD5\",\n    10390: \"Gallid alphaherpesvirus 2\",\n    10391: \"Gallid herpesvirus 2 strain FC126\",\n    10392: \"Gallid herpesvirus 2 strain H2\",\n    10395: \"Herpesvirus sylvilagus\",\n    10397: \"Tupaiid betaherpesvirus 1\",\n    10398: \"Ovine gammaherpesvirus 2\",\n    10401: \"Ictalurid herpesvirus 1\",\n    10404: \"Hepadnaviridae\",\n    10405: \"Orthohepadnavirus\",\n    10406: \"Ground squirrel hepatitis virus\",\n    10407: \"Hepatitis B virus\",\n    10408: \"Hepatitis B virus subtype adw2\",\n    10409: \"Hepatitis B virus adr4\",\n    10410: \"Hepatitis B virus adw/991\",\n    10411: \"Hepatitis B virus alpha1\",\n    10412: \"Hepatitis B virus adw/Indonesia/PIDW420\",\n    10413: \"Hepatitis B virus adw/Japan/PJDW233\",\n    10414: \"Hepatitis B virus LSH/chimpanzee\",\n    10415: \"Hepatitis B virus adw/Okinawa/PODW282\",\n    10418: \"Hepatitis B virus subtype ayw\",\n    10419: \"Hepatitis B virus subtype adyw\",\n    10421: \"Hepatitis delta virus (ISOLATE 7/18/83)\",\n    10422: \"Hepatitis delta virus (ISOLATE AMERICAN)\",\n    10423: \"Hepatitis delta virus (ISOLATE ITALIAN)\",\n    10424: \"Hepatitis delta virus (ISOLATE JAPANESE M-1)\",\n    10425: \"Hepatitis delta virus (ISOLATE JAPANESE M-2)\",\n    10426: \"Hepatitis delta virus (ISOLATE NAURU)\",\n    10427: \"Hepatitis delta virus (ISOLATE JAPANESE S-1)\",\n    10428: \"Hepatitis delta virus (ISOLATE JAPANESE S-2)\",\n    10430: \"Woodchuck hepatitis virus 1\",\n    10431: \"Woodchuck hepatitis virus 59\",\n    10432: \"Woodchuck hepatitis virus 7\",\n    10433: \"Woodchuck hepatitis virus 8\",\n    10436: \"Woodchuck hepatitis virus w64 (ISOLATE PWS23)\",\n    10437: \"Avihepadnavirus\",\n    10439: \"Duck hepatitis B virus brown Shanghai duck/S5\",\n    10440: \"Duck hepatitis B virus white Shanghai duck/S31\",\n    10442: \"Baculoviridae\",\n    10449: \"Lymantria dispar multiple nucleopolyhedrovirus\",\n    10450: \"Orgyia pseudotsugata single capsid nuclopolyhedrovirus\",\n    10453: \"Panolis flammea nucleopolyhedrovirus\",\n    10454: \"Spodoptera exigua multiple nucleopolyhedrovirus\",\n    10455: \"Spodoptera frugiperda multiple nucleopolyhedrovirus\",\n    10456: \"Spodoptera littoralis nucleopolyhedrovirus\",\n    10462: \"Trichoplusia ni granulovirus\",\n    10463: \"unidentified granulovirus\",\n    10464: \"Agrotis segetum granulovirus\",\n    10465: \"Pieris brassicae granulovirus\",\n    10468: \"Helicoverpa zea single nucleopolyhedrovirus\",\n    10469: \"unidentified baculovirus\",\n    10471: \"unidentified nuclear polyhedrosis viruses\",\n    10472: \"Plasmaviridae\",\n    10473: \"Plasmavirus\",\n    10474: \"Fuselloviridae\",\n    10475: \"Alphafusellovirus\",\n    10477: \"Lipothrixviridae\",\n    10479: \"Thermoproteus tenax virus 1\",\n    10480: \"Thermoproteus tenax virus 1 (STRAIN KRA1)\",\n    10481: \"Thermoproteus tenax virus 1 (STRAIN VT3)\",\n    10482: \"Polydnaviridae\",\n    10483: \"Ichnovirus\",\n    10484: \"Campoletis sonorensis ichnovirus\",\n    10485: \"Bracovirus\",\n    10486: \"Iridoviridae\",\n    10487: \"Iridovirus\",\n    10489: \"Simulium sp. iridescent virus\",\n    10490: \"Tipula iridescent virus\",\n    10491: \"Chloriridovirus\",\n    10492: \"Ranavirus\",\n    10493: \"Frog virus 3\",\n    10494: \"Lymphocystivirus\",\n    10497: \"African swine fever virus\",\n    10498: \"African swine fever virus BA71V\",\n    10499: \"African swine fever virus LIS57\",\n    10500: \"African swine fever virus Malawi LIL 20/1\",\n    10501: \"Phycodnaviridae\",\n    10506: \"Paramecium bursaria Chlorella virus 1\",\n    10507: \"Chlorella virus\",\n    10508: \"Adenoviridae\",\n    10509: \"Mastadenovirus\",\n    10510: \"Bovine adenovirus 3\",\n    10511: \"Bovine adenovirus 7\",\n    10512: \"Canine adenovirus 1\",\n    10513: \"Canine adenovirus 1 strain Glaxo\",\n    10514: \"Canine adenovirus 2\",\n    10515: \"Human adenovirus 2\",\n    10519: \"Human adenovirus 7\",\n    10521: \"Human adenovirus 14\",\n    10522: \"Human adenovirus 35\",\n    10524: \"Human adenovirus 41\",\n    10527: \"Human adenovirus D9\",\n    10528: \"Human adenovirus 18\",\n    10529: \"Human adenovirus 31\",\n    10530: \"Murine adenovirus 1\",\n    10532: \"Simian adenovirus 7\",\n    10533: \"Human adenovirus 1\",\n    10534: \"Human adenovirus 6\",\n    10535: \"unidentified adenovirus\",\n    10537: \"Canine mastadenovirus A\",\n    10541: \"Human adenovirus 11\",\n    10546: \"Bovine adenovirus 1\",\n    10547: \"Fowl aviadenovirus 10\",\n    10548: \"Human adenovirus 34\",\n    10552: \"Aviadenovirus\",\n    10553: \"Fowl aviadenovirus 1\",\n    10556: \"Rhizidiovirus\",\n    10560: \"Bovine papillomavirus type 2\",\n    10561: \"Xipapillomavirus 1\",\n    10562: \"Bovine papillomavirus type 4\",\n    10563: \"Bovine papillomavirus type 6\",\n    10564: \"Deltapapillomavirus 2\",\n    10565: \"Deltapapillomavirus 1\",\n    10566: \"Human papillomavirus\",\n    10567: \"Iotapapillomavirus 1\",\n    10568: \"Micromys minutus papillomavirus 1\",\n    10569: \"Reindeer papillomavirus\",\n    10570: \"Alphapapillomavirus 12\",\n    10571: \"Bovine papillomavirus\",\n    10572: \"Hamster papovavirus\",\n    10573: \"Human papillomavirus type 13\",\n    10574: \"Monkey B-lymphotropic papovavirus\",\n    10576: \"Pygmy chimpanzee papillomavirus type 1\",\n    10577: \"Chaffinch papillomavirus\",\n    10579: \"Human papillomavirus type 8\",\n    10580: \"Human papillomavirus type 11\",\n    10583: \"Human papillomavirus type 1a\",\n    10584: \"Human papillomavirus type 2a\",\n    10585: \"Human papillomavirus type 31\",\n    10586: \"Human papillomavirus type 33\",\n    10587: \"Human papillomavirus type 35\",\n    10588: \"Human papillomavirus type 39\",\n    10589: \"Human papillomavirus type 41\",\n    10590: \"Human papillomavirus type 42\",\n    10591: \"Human papillomavirus type 43\",\n    10592: \"Human papillomavirus type 44\",\n    10593: \"Human papillomavirus type 45\",\n    10594: \"Human papillomavirus type 47\",\n    10595: \"Human papillomavirus type 51\",\n    10596: \"Human papillomavirus type 56\",\n    10598: \"Human papillomavirus type 58\",\n    10599: \"Human papillomavirus type 5b\",\n    10600: \"Human papillomavirus type 6b\",\n    10601: \"Human papillomavirus type 6c\",\n    10602: \"Human papillomavirus type me180\",\n    10604: \"Human papillomavirus type 12\",\n    10605: \"Human papillomavirus type 14\",\n    10606: \"Human papillomavirus 15\",\n    10607: \"Human papillomavirus 17\",\n    10608: \"Human papillomavirus 19\",\n    10609: \"Human papillomavirus type 25\",\n    10610: \"Human papillomavirus type 2c\",\n    10611: \"Human papillomavirus type 30\",\n    10614: \"Human papillomavirus 3\",\n    10615: \"Human papillomavirus type 40\",\n    10616: \"Human papillomavirus type 49\",\n    10617: \"Human papillomavirus 4\",\n    10618: \"Human papillomavirus type 52\",\n    10620: \"Human papillomavirus type 7\",\n    10621: \"Human papillomavirus 9\",\n    10622: \"Monkey papillomavirus\",\n    10623: \"Kappapapillomavirus 2\",\n    10630: \"BK virus strain GS\",\n    10631: \"BK virus strain AS\",\n    10632: \"JC polyomavirus\",\n    10636: \"Murine polyomavirus strain A2\",\n    10637: \"Mouse polyomavirus (strain Crawford small-plaque)\",\n    10638: \"Kilham polyomavirus\",\n    10639: \"Caulimovirus\",\n    10640: \"Carnation etched ring virus\",\n    10641: \"Cauliflower mosaic virus\",\n    10642: \"Cauliflower mosaic virus (STRAIN D4)\",\n    10643: \"Cauliflower mosaic virus (STRAIN BARI 1)\",\n    10644: \"Cauliflower mosaic virus (STRAIN CM-1841)\",\n    10645: \"Cauliflower mosaic virus (STRAIN D/H)\",\n    10646: \"Cauliflower mosaic virus (STRAIN S-JAPAN)\",\n    10647: \"Cauliflower mosaic virus (STRAIN PV147)\",\n    10648: \"Cauliflower mosaic virus (STRAIN STRASBOURG)\",\n    10649: \"Figwort mosaic virus\",\n    10650: \"Figwort mosaic virus (STRAIN DXS)\",\n    10651: \"Soybean chlorotic mottle virus\",\n    10652: \"Badnavirus\",\n    10653: \"Commelina yellow mottle virus\",\n    10654: \"Rice tungro bacilliform virus\",\n    10655: \"Rice tungro bacilliform virus (isolate Philippines)\",\n    10656: \"Tectiviridae\",\n    10658: \"Enterobacteria phage PRD1\",\n    10659: \"Corticoviridae\",\n    10660: \"Corticovirus\",\n    10661: \"Pseudoalteromonas virus PM2\",\n    10662: \"Myoviridae\",\n    10663: \"Tequatrovirus\",\n    10664: \"Enterobacteria phage T2\",\n    10665: \"Escherichia virus T4\",\n    10666: \"Enterobacteria phage T6\",\n    10667: \"Bacillus phage PBSX\",\n    10674: \"Enterobacteria phage K3\",\n    10676: \"Enterobacteria phage M1\",\n    10677: \"Escherichia virus Mu\",\n    10678: \"Escherichia virus P1\",\n    10679: \"Escherichia virus P2\",\n    10680: \"Enterobacteria phage P4\",\n    10681: \"Enterobacteria phage phiR73\",\n    10682: \"Enterobacteria phage P7\",\n    10683: \"Bacillus virus PBS1\",\n    10684: \"Bacillus phage PBS2\",\n    10685: \"Bacillus virus SPO1\",\n    10686: \"Enterobacteria phage TuIa\",\n    10687: \"Enterobacteria phage TuIb\",\n    10689: \"Vibrio phage CP-T1\",\n    10690: \"Haemophilus virus HP1\",\n    10691: \"Enterobacteria phage Ox2\",\n    10692: \"Enterobacteria phage RB18\",\n    10693: \"Enterobacteria phage RB51\",\n    10696: \"Bacillus phage SP82\",\n    10699: \"Siphoviridae\",\n    10701: \"Actinophage RP3\",\n    10702: \"Streptomyces phage VWB\",\n    10703: \"Corynephage beta\",\n    10704: \"Rhizobium phage 16-3\",\n    10705: \"Enterobacteria phage 82\",\n    10707: \"Escherichia virus BF23\",\n    10708: \"Pseudomonas virus D3112\",\n    10710: \"Escherichia virus Lambda\",\n    10711: \"Enterobacteria phage P21\",\n    10712: \"Phage 434\",\n    10713: \"Enterobacteria phage phi80\",\n    10714: \"Corynephage omega\",\n    10715: \"Staphylococcus phage 42D.m\",\n    10717: \"Bacillus phage phi105\",\n    10719: \"Streptomyces virus phiC31\",\n    10721: \"Staphylococcus phage S phi-C\",\n    10723: \"Bacillus phage SPO2\",\n    10724: \"Bacillus phage SPP1\",\n    10725: \"Bacillus phage SPR\",\n    10726: \"Escherichia virus T5\",\n    10727: \"Staphylococcus phage L54a\",\n    10728: \"Streptococcus pneumoniae phage HB-3\",\n    10730: \"Escherichia phage 933W\",\n    10732: \"Streptomyces phage R4\",\n    10733: \"Corynebacterium phage gamma\",\n    10735: \"Bacillus phage rho11s\",\n    10736: \"Bacillus phage phi3T\",\n    10737: \"Enterobacteria phage phi21\",\n    10738: \"Enterobacteria phage PA-2\",\n    10742: \"Escherichia virus HK022\",\n    10743: \"Phage 21\",\n    10744: \"Podoviridae\",\n    10746: \"Lactococcus phage phi-vML3\",\n    10747: \"Streptococcus phage Cp1\",\n    10748: \"Streptococcus phage CP-7\",\n    10749: \"Streptococcus phage CP-9\",\n    10750: \"Enterobacteria phage LP7\",\n    10752: \"Escherichia virus N4\",\n    10753: \"Bacillus phage Nf\",\n    10754: \"Salmonella virus P22\",\n    10755: \"Phage phi-15\",\n    10756: \"Bacillus virus phi29\",\n    10757: \"Bacillus phage PZA\",\n    10759: \"Enterobacteria phage T3\",\n    10760: \"Escherichia phage T7\",\n    10761: \"Shigella virus Sf6\",\n    10765: \"Bacillus phage H1\",\n    10766: \"Enterobacteria phage K11\",\n    10773: \"Bacillus phage SF6\",\n    10778: \"Bacillus virus B103\",\n    10779: \"Bacillus phage BS32\",\n    10780: \"Parvoviridae\",\n    10783: \"Aleutian mink disease parvovirus (STRAIN G)\",\n    10784: \"Bovine parvovirus\",\n    10785: \"Feline parvovirus\",\n    10786: \"Feline panleukopenia virus\",\n    10787: \"Feline panleukopenia virus (strain 193)\",\n    10788: \"Canine parvovirus\",\n    10789: \"Canine parvovirus strain 780929\",\n    10790: \"Canine parvovirus strain CPV-D CORNELL 320\",\n    10791: \"Canine parvovirus strain N\",\n    10792: \"Mink enteritis virus\",\n    10793: \"Mink enteritis virus strain Abashiri\",\n    10794: \"Minute virus of mice\",\n    10795: \"Murine minute virus (STRAIN MVMI)\",\n    10796: \"Porcine parvovirus\",\n    10797: \"Porcine parvovirus NADL-2\",\n    10798: \"Human parvovirus B19\",\n    10799: \"H-1 parvovirus\",\n    10800: \"Parvovirus H3\",\n    10801: \"Parvovirus R1\",\n    10802: \"Raccoon parvovirus\",\n    10803: \"Dependoparvovirus\",\n    10804: \"Adeno-associated virus - 2\",\n    10805: \"Adeno-associated virus 2H\",\n    10806: \"Ambidensovirus\",\n    10808: \"Aedes densonucleosis virus (STRAIN GKV 002 002)\",\n    10809: \"Bombyx mori densovirus\",\n    10811: \"Geminiviridae\",\n    10812: \"Mastrevirus\",\n    10813: \"Curtovirus\",\n    10814: \"Begomovirus\",\n    10815: \"Abutilon mosaic virus\",\n    10816: \"Abutilon mosaic virus - [WEST INDIA]\",\n    10817: \"African cassava mosaic virus\",\n    10818: \"African cassava mosaic virus - [West Kenya 844]\",\n    10820: \"Chloris striate mosaic virus\",\n    10821: \"Maize streak virus\",\n    10822: \"Maize streak virus - [Kenya]\",\n    10823: \"Maize streak virus - [Nigeria]\",\n    10824: \"Maize streak virus - [South Africa]\",\n    10825: \"Miscanthus streak virus\",\n    10826: \"Panicum streak virus\",\n    10827: \"Potato yellow mosaic virus\",\n    10829: \"Squash leaf curl virus\",\n    10830: \"Tobacco yellow dwarf virus\",\n    10831: \"Tomato golden mosaic virus\",\n    10832: \"Tomato yellow leaf curl virus\",\n    10834: \"Wheat dwarf virus\",\n    10835: \"Tomato mottle virus\",\n    10836: \"Sugarcane streak virus\",\n    10837: \"Digitaria streak virus\",\n    10838: \"Bean dwarf mosaic virus\",\n    10839: \"Bean golden mosaic virus\",\n    10840: \"Beet curly top virus\",\n    10841: \"Microviridae\",\n    10842: \"Microvirus\",\n    10843: \"Escherichia phage G4\",\n    10844: \"Enterobacteria phage S13\",\n    10845: \"Escherichia phage St-1\",\n    10847: \"Escherichia virus phiX174\",\n    10848: \"Escherichia virus phiK\",\n    10849: \"Escherichia phage alpha3\",\n    10850: \"Enterobacteria phage G14\",\n    10851: \"Enterobacteria phage U3\",\n    10852: \"Spiromicrovirus\",\n    10854: \"Spiroplasma phage 1-R8A2B\",\n    10855: \"Spiroplasma virus SpV4\",\n    10856: \"Bdellomicrovirus\",\n    10860: \"Inoviridae\",\n    10861: \"Inovirus\",\n    10862: \"Xanthomonas virus Cf1c\",\n    10863: \"Enterobacteria phage f1\",\n    10864: \"Enterobacteria phage fd\",\n    10866: \"Enterobacteria phage ZJ/2\",\n    10867: \"Enterobacteria phage Ike\",\n    10868: \"Enterobacteria phage If1\",\n    10869: \"Escherichia virus I22\",\n    10872: \"Pseudomonas phage Pf3\",\n    10874: \"Shigella phage SfX\",\n    10875: \"Plectrovirus\",\n    10877: \"Cystoviridae\",\n    10878: \"Cystovirus\",\n    10879: \"Pseudomonas virus phi6\",\n    10880: \"Reoviridae\",\n    10882: \"Orthoreovirus\",\n    10884: \"Mammalian orthoreovirus 1 Lang\",\n    10885: \"Mammalian orthoreovirus 2 D5/Jones\",\n    10886: \"Mammalian orthoreovirus 3 Dearing\",\n    10891: \"Reovirus sp.\",\n    10892: \"Orbivirus\",\n    10893: \"Broadhaven virus\",\n    10894: \"Tick and insect-borne orbivirus\",\n    10895: \"Australian bluetongue virus\",\n    10897: \"African horse sickness virus 9\",\n    10900: \"Bluetongue virus (serotype 10 / American isolate)\",\n    10903: \"Bluetongue virus 17\",\n    10904: \"Bluetongue virus (serotype 1 / isolate Australia)\",\n    10905: \"Bluetongue virus (serotype 1 / isolate South Africa)\",\n    10906: \"Bluetongue virus 10\",\n    10907: \"Bluetongue virus (serotype 2 / isolate USA)\",\n    10910: \"Epizootic hemorrhagic disease virus (serotype 2 / strain Alberta)\",\n    10911: \"Coltivirus\",\n    10912: \"Rotavirus\",\n    10913: \"Porcine rotavirus\",\n    10915: \"Porcine rotavirus serotype 5/strain OSU\",\n    10916: \"Porcine rotavirus C strain Cowden\",\n    10917: \"Porcine rotavirus strain Gottfried\",\n    10918: \"Porcine rotavirus strain K\",\n    10919: \"Porcine rotavirus strain YM\",\n    10921: \"Feline rotavirus\",\n    10922: \"Simian rotavirus\",\n    10923: \"Simian rotavirus A/SA11\",\n    10925: \"Simian rotavirus A/SA11-FEM\",\n    10926: \"Simian rotavirus A/SA11-SEM\",\n    10927: \"Bovine rotavirus\",\n    10928: \"Bovine rotavirus strain B641/G6\",\n    10929: \"Bovine rotavirus (serotype 6 / STRAIN 61A)\",\n    10931: \"Bovine rotavirus C486\",\n    10933: \"Bovine rotavirus strain RF\",\n    10934: \"Bovine rotavirus strain UK/G6\",\n    10935: \"Bovine rotavirus (strain VMRI)\",\n    10937: \"Equine rotavirus\",\n    10939: \"Equine rotavirus strain H-2\",\n    10941: \"Human rotavirus A\",\n    10942: \"Human rotavirus B\",\n    10943: \"Human rotavirus C\",\n    10944: \"Human rotavirus serotype 1 / strain 1076\",\n    10946: \"Human rotavirus (STRAIN RV5)\",\n    10947: \"Human rotavirus serotype 1 / strain 69M\",\n    10948: \"Human rotavirus (SEROTYPE 2 / STRAIN HU5)\",\n    10949: \"Human rotavirus (SEROTYPE G / STRAIN B37)\",\n    10950: \"Human rotavirus (SEROTYPE 2 / STRAIN DS1)\",\n    10951: \"Human rotavirus (SEROTYPE 2 / STRAIN HN126)\",\n    10952: \"Human rotavirus strain KU\",\n    10953: \"Human rotavirus (STRAIN L26)\",\n    10954: \"Human rotavirus serotype 1 / strain M37\",\n    10955: \"Human rotavirus strain MCN13\",\n    10956: \"Human rotavirus serotype 1 / strain MO\",\n    10957: \"Human rotavirus strain P\",\n    10958: \"Human rotavirus strain RRV\",\n    10959: \"Human rotavirus (SEROTYPE 2 / STRAIN S2)\",\n    10960: \"Human rotavirus G4 strain St. Thomas 3\",\n    10961: \"Human rotavirus G4 strain VA70\",\n    10962: \"Human rotavirus strain WA\",\n    10963: \"Rabbit rotavirus\",\n    10967: \"Porcine rotavirus A\",\n    10968: \"Porcine rotavirus C\",\n    10970: \"Rotavirus sp.\",\n    10971: \"Rotavirus subgroup 2\",\n    10978: \"Rotavirus subgroup 1\",\n    10979: \"Aquareovirus\",\n    10981: \"Cypovirus\",\n    10983: \"Euxoa scandens cypovirus 5\",\n    10985: \"Phytoreovirus\",\n    10986: \"Rice gall dwarf virus\",\n    10987: \"Wound tumor virus\",\n    10988: \"Fijivirus\",\n    10989: \"Maize rough dwarf virus\",\n    10990: \"Rice black streaked dwarf virus\",\n    10991: \"Rice dwarf virus\",\n    10992: \"Oryzavirus\",\n    10993: \"Birnaviridae\",\n    10995: \"Infectious bursal disease virus\",\n    10996: \"Infectious bursal disease virus 52/70\",\n    10997: \"Infectious bursal disease virus 002-73/AUS\",\n    10998: \"Infectious bursal disease virus CU-1\",\n    10999: \"Infectious bursal disease virus OH\",\n    11000: \"Infectious bursal disease virus PBG-98\",\n    11001: \"Infectious bursal disease virus STC\",\n    11002: \"Infectious pancreatic necrosis virus\",\n    11003: \"Infectious pancreatic necrosis virus - Jasper\",\n    11004: \"Infectious pancreatic necrosis virus - N1\",\n    11005: \"Infectious pancreatic necrosis virus - Sp\",\n    11006: \"Totiviridae\",\n    11007: \"Totivirus\",\n    11008: \"Saccharomyces cerevisiae virus L-A\",\n    11009: \"Ustilago maydis virus P4\",\n    11010: \"Ustilago maydis virus P6\",\n    11011: \"Giardiavirus\",\n    11012: \"Partitiviridae\",\n    11014: \"Chrysovirus\",\n    11018: \"Togaviridae\",\n    11019: \"Alphavirus\",\n    11020: \"Barmah Forest virus\",\n    11021: \"Eastern equine encephalitis virus\",\n    11022: \"Eastern equine encephalitis virus (STRAIN VA33[TEN BROECK])\",\n    11023: \"Middelburg virus\",\n    11024: \"Highlands J virus\",\n    11028: \"O'nyong-nyong virus strain Gulu\",\n    11029: \"Ross River virus\",\n    11030: \"Ross river virus (STRAIN 213970)\",\n    11031: \"Ross river virus (STRAIN NB5092)\",\n    11032: \"Ross river virus (STRAIN T48)\",\n    11033: \"Semliki Forest virus\",\n    11034: \"Sindbis virus\",\n    11036: \"Venezuelan equine encephalitis virus\",\n    11037: \"Venezuelan equine encephalitis virus (strain TC-83)\",\n    11038: \"Venezuelan equine encephalitis virus (strain Trinidad donkey)\",\n    11039: \"Western equine encephalitis virus\",\n    11040: \"Rubivirus\",\n    11041: \"Rubella virus\",\n    11043: \"Rubella virus strain M33\",\n    11044: \"Rubella virus vaccine strain RA27/3\",\n    11045: \"Rubella virus strain Therien\",\n    11047: \"Equine arteritis virus\",\n    11048: \"Lactate dehydrogenase-elevating virus\",\n    11049: \"Lelystad virus\",\n    11050: \"Flaviviridae\",\n    11051: \"Flavivirus\",\n    11052: \"Dengue virus group\",\n    11053: \"Dengue virus 1\",\n    11057: \"Dengue virus 1 Thailand/AHF 82-80/1980\",\n    11058: \"Dengue virus 1 Jamaica/CV1636/1977\",\n    11059: \"Dengue virus 1 Nauru/West Pac/1974\",\n    11060: \"Dengue virus 2\",\n    11062: \"Dengue virus 2 Malaysia M2\",\n    11063: \"Dengue virus 2 Malaysia M3\",\n    11064: \"Dengue virus 2 Jamaica/1409/1983\",\n    11065: \"Dengue virus 2 Thailand/NGS-C/1944\",\n    11066: \"Dengue virus 2 Puerto Rico/PR159-S1/1969\",\n    11067: \"Dengue virus 2 Tonga/EKB194/1974\",\n    11068: \"Dengue virus 2 Thailand/PUO-218/1980\",\n    11069: \"Dengue virus 3\",\n    11070: \"Dengue virus 4\",\n    11071: \"Japanese encephalitis virus group\",\n    11072: \"Japanese encephalitis virus\",\n    11073: \"Japanese encephalitis virus strain SA-14\",\n    11074: \"Japanese encephalitis virus strain SA(V)\",\n    11075: \"Japanese encephalitis virus strain JAOARS982\",\n    11076: \"Japanese encephalitis virus strain Nakayama\",\n    11077: \"Kunjin virus\",\n    11078: \"Kunjin virus (STRAIN MRM61C)\",\n    11079: \"Murray Valley encephalitis virus\",\n    11080: \"Saint Louis encephalitis virus\",\n    11081: \"St. Louis encephalitis virus (strain MS1-7)\",\n    11082: \"West Nile virus\",\n    11083: \"Powassan virus\",\n    11084: \"Tick-borne encephalitis virus\",\n    11085: \"Langat virus\",\n    11086: \"Louping ill virus\",\n    11087: \"Tick-borne encephalitis virus (STRAIN SOFJIN)\",\n    11088: \"Tick-borne encephalitis virus (WESTERN SUBTYPE)\",\n    11089: \"Yellow fever virus\",\n    11090: \"Yellow fever virus 17D\",\n    11092: \"Kumlinge virus\",\n    11093: \"Flavivirus sp.\",\n    11094: \"Negishi virus\",\n    11095: \"Pestivirus\",\n    11096: \"Classical swine fever virus\",\n    11097: \"Hog cholera virus (strain Alfort)\",\n    11098: \"Classical swine fever virus - Brescia\",\n    11099: \"Bovine viral diarrhea virus 1\",\n    11100: \"Bovine viral diarrhea virus 1-NADL\",\n    11101: \"Pestivirus type 3\",\n    11102: \"Hepacivirus\",\n    11103: \"Hepacivirus C\",\n    11104: \"Hepatitis C virus (isolate 1)\",\n    11105: \"Hepatitis C virus (isolate BK)\",\n    11106: \"Hepatitis C virus (isolate EC10)\",\n    11107: \"Hepatitis C virus (isolate EC1)\",\n    11108: \"Hepatitis C virus (isolate H)\",\n    11109: \"Hepatitis C virus HCT27\",\n    11110: \"Hepatitis C virus HCT18\",\n    11111: \"Hepatitis C virus HC-J2\",\n    11112: \"Hepatitis C virus HC-J5\",\n    11113: \"Hepatitis C virus isolate HC-J6\",\n    11114: \"Hepatitis C virus HC-J7\",\n    11115: \"Hepatitis C virus isolate HC-J8\",\n    11116: \"Hepatitis C virus (isolate Japanese)\",\n    11117: \"Hepatitis C virus (isolate TH)\",\n    11118: \"Coronaviridae\",\n    11120: \"Infectious bronchitis virus\",\n    11121: \"Avian infectious bronchitis virus (strain 6/82)\",\n    11122: \"Avian infectious bronchitis virus (strain Beaudette)\",\n    11123: \"Avian infectious bronchitis virus (strain Beaudette M42)\",\n    11124: \"Avian infectious bronchitis virus (strain D274)\",\n    11125: \"Avian infectious bronchitis virus (strain D3896)\",\n    11126: \"Avian infectious bronchitis virus (strain KB8523)\",\n    11127: \"Avian infectious bronchitis virus (strain M41)\",\n    11128: \"Bovine coronavirus\",\n    11129: \"Bovine coronavirus strain F15\",\n    11130: \"Bovine coronavirus strain L9\",\n    11131: \"Bovine coronavirus LY-138\",\n    11132: \"Bovine coronavirus Mebus\",\n    11133: \"Bovine coronavirus strain Quebec\",\n    11134: \"Bovine coronavirus strain vaccine\",\n    11135: \"Feline infectious peritonitis virus\",\n    11137: \"Human coronavirus 229E\",\n    11138: \"Murine hepatitis virus\",\n    11139: \"Murine hepatitis virus strain 1\",\n    11140: \"Murine hepatitis virus strain 3\",\n    11142: \"Murine hepatitis virus strain A59\",\n    11143: \"Murine hepatitis virus strain defective JHM\",\n    11144: \"Murine hepatitis virus strain JHM\",\n    11145: \"Murine hepatitis virus strain S\",\n    11146: \"Porcine respiratory coronavirus\",\n    11148: \"Porcine respiratory coronavirus (STRAIN RM4)\",\n    11149: \"Transmissible gastroenteritis virus\",\n    11150: \"Porcine transmissible gastroenteritis coronavirus strain FS772/70\",\n    11151: \"Porcine transmissible gastroenteritis coronavirus strain Purdue\",\n    11152: \"Turkey coronavirus\",\n    11153: \"Canine coronavirus\",\n    11155: \"Torovirus\",\n    11156: \"Berne virus\",\n    11157: \"Mononegavirales\",\n    11158: \"Paramyxoviridae\",\n    11159: \"Paramyxovirinae\",\n    11162: \"Mumps virus strain Edinburgh 2\",\n    11163: \"Mumps virus strain Edinburgh 4\",\n    11164: \"Mumps virus strain Edinburgh 6\",\n    11165: \"Mumps virus strain Matsuyama\",\n    11166: \"Mumps virus strain Belfast\",\n    11167: \"Mumps virus strain Enders\",\n    11168: \"Mumps virus strain Jeryl Lynn\",\n    11169: \"Mumps virus strain Kilham\",\n    11170: \"Mumps virus Bristol 1\",\n    11171: \"Mumps virus Miyahara vaccine\",\n    11172: \"Mumps virus strain RW\",\n    11173: \"Mumps virus strain SBL-1\",\n    11174: \"Mumps virus strain Takahashi\",\n    11175: \"Mumps virus strain Urabe vaccine AM9\",\n    11176: \"Avian avulavirus 1\",\n    11177: \"Newcastle disease virus (STRAIN AUSTRALIA-VICTORIA/32)\",\n    11178: \"Newcastle disease virus strain Beaudette C/45\",\n    11179: \"Newcastle disease virus CHI/85\",\n    11180: \"Newcastle disease virus strain D26/76\",\n    11181: \"Newcastle disease virus (STRAIN B1-HITCHNER/47)\",\n    11182: \"Newcastle disease virus strain Italien/45\",\n    11183: \"Newcastle disease virus (STRAIN IBA/85)\",\n    11184: \"Newcastle disease virus (STRAIN LAS/46)\",\n    11185: \"Newcastle disease virus Miyadera/51\",\n    11186: \"Newcastle disease virus strain Queensland/66\",\n    11187: \"Newcastle disease virus strain HER/33\",\n    11188: \"Newcastle disease virus (STRAIN TEXAS)\",\n    11189: \"Newcastle disease virus (STRAIN TEXAS G.B./48)\",\n    11190: \"Newcastle disease virus Ulster/67\",\n    11191: \"Murine respirovirus\",\n    11193: \"Sendai virus (strain 6/94)\",\n    11194: \"Sendai virus (strain Enders)\",\n    11195: \"Sendai virus (strain Fushimi)\",\n    11196: \"Sendai virus (strain Harris)\",\n    11198: \"Sendai virus (Z)\",\n    11208: \"Simian virus 5 (strain W3)\",\n    11210: \"Human parainfluenza virus 1 (C39)\",\n    11211: \"HPIV-1 (human/Washington/1957)\",\n    11213: \"Human parainfluenza virus 2 (strain Greer)\",\n    11214: \"Human parainfluenza virus 2 (strain Toshiba)\",\n    11215: \"Bovine respirovirus 3\",\n    11216: \"Human respirovirus 3\",\n    11217: \"Human parainfluenza 3 virus (strain NIH 47885)\",\n    11218: \"Human parainfluenza 3 virus (strain AUS/124854/74)\",\n    11219: \"Human parainfluenza 3 virus (strain TEX/545/80)\",\n    11220: \"Human parainfluenza 3 virus (strain TEX/9305/82)\",\n    11221: \"Human parainfluenza 3 virus (strain TEX/12677/83)\",\n    11222: \"Human parainfluenza 3 virus (strain WASH/641/79)\",\n    11223: \"Human parainfluenza 3 virus (strain WASH/1511/73)\",\n    11224: \"Human parainfluenza virus 4a\",\n    11225: \"Human parainfluenza virus 4a (strain Toshiba)\",\n    11226: \"Human parainfluenza virus 4b\",\n    11227: \"Human parainfluenza virus 4b (strain 68-333)\",\n    11229: \"Morbillivirus\",\n    11232: \"Canine morbillivirus\",\n    11233: \"Canine distemper virus strain Onderstepoort\",\n    11234: \"Measles morbillivirus\",\n    11235: \"Measles virus strain Edmonston\",\n    11236: \"Measles virus strain Halle\",\n    11237: \"Measles virus strain IP-3-CA\",\n    11238: \"Measles virus strain HU2\",\n    11239: \"Measles virus strain Yamagata-1\",\n    11240: \"Phocine morbillivirus\",\n    11241: \"Rinderpest morbillivirus\",\n    11242: \"Rinderpest virus (strain Kabete O)\",\n    11243: \"Rinderpest virus (strain L)\",\n    11244: \"Pneumoviridae\",\n    11245: \"Pneumovirus\",\n    11246: \"Bovine orthopneumovirus\",\n    11247: \"Bovine respiratory syncytial virus ATCC51908\",\n    11248: \"Bovine respiratory syncytial virus (strain Copenhagen)\",\n    11249: \"Bovine respiratory syncytial virus (strain RB94)\",\n    11250: \"Human orthopneumovirus\",\n    11251: \"Human respiratory syncytial virus (subgroup B / strain 18537)\",\n    11252: \"Human respiratory syncytial virus (strain RSB642)\",\n    11253: \"Human respiratory syncytial virus (strain RSB1734)\",\n    11254: \"Human respiratory syncytial virus (strain RSB5857)\",\n    11255: \"Human respiratory syncytial virus (strain RSB6190)\",\n    11256: \"Human respiratory syncytial virus (strain RSB6256)\",\n    11257: \"Human respiratory syncytial virus (strain RSB6614)\",\n    11258: \"Human respiratory syncytial virus (subgroup B / strain 8/60)\",\n    11259: \"Human respiratory syncytial virus A2\",\n    11260: \"Human respiratory syncytial virus A strain Long\",\n    11261: \"Human respiratory syncytial virus strain RSS-2\",\n    11263: \"Murine orthopneumovirus\",\n    11264: \"Turkey rhinotracheitis virus\",\n    11266: \"Filoviridae\",\n    11269: \"Marburg marburgvirus\",\n    11270: \"Rhabdoviridae\",\n    11271: \"Vesiculovirus\",\n    11272: \"Chandipura virus\",\n    11273: \"Chandipura virus I653514\",\n    11274: \"Piry virus\",\n    11276: \"Vesicular stomatitis virus\",\n    11277: \"Vesicular stomatitis Indiana virus\",\n    11278: \"Vesicular stomatitis Indiana virus strain Glasgow\",\n    11279: \"Vesicular stomatitis Indiana virus strain Mudd-Summers\",\n    11280: \"Vesicular stomatitis New Jersey virus\",\n    11281: \"Vesicular stomatitis virus (serotype New Jersey / strain Hazelhurst)\",\n    11282: \"Vesicular stomatitis virus (serotype New Jersey / strain Missouri)\",\n    11283: \"Vesicular stomatitis virus (serotype New Jersey / strain Ogden)\",\n    11284: \"Vesicular stomatitis Indiana virus strain Orsay\",\n    11285: \"Vesicular stomatitis Indiana virus strain San Juan\",\n    11286: \"Lyssavirus\",\n    11287: \"Viral hemorrhagic septicemia virus\",\n    11288: \"Viral hemorrhagic septicemia virus 07-71\",\n    11289: \"Viral hemorrhagic septicemia virus strain MAKAH\",\n    11290: \"Infectious hematopoietic necrosis virus\",\n    11291: \"Infectious hematopoietic necrosis virus - round butte\",\n    11292: \"Rabies lyssavirus\",\n    11293: \"Rabies virus AVO1\",\n    11294: \"Rabies virus CVS-11\",\n    11295: \"Rabies virus ERA\",\n    11296: \"Rabies virus HEP-FLURY\",\n    11297: \"Rabies virus PM\",\n    11298: \"Rabies virus Nishigahara RCEH\",\n    11300: \"Rabies virus SAD B19\",\n    11301: \"Sigma virus\",\n    11303: \"Bovine ephemeral fever virus\",\n    11305: \"Cytorhabdovirus\",\n    11306: \"Nucleorhabdovirus\",\n    11307: \"Sonchus yellow net nucleorhabdovirus\",\n    11308: \"Orthomyxoviridae\",\n    11309: \"unidentified influenza virus\",\n    11313: \"Fowl plague virus\",\n    11318: \"Dhori thogotovirus\",\n    11319: \"Dhori virus (strain Indian/1313/61)\",\n    11320: \"Influenza A virus\",\n    11338: \"Influenza A virus (A/chicken/Alabama/1/75(H4))\",\n    11339: \"Influenza A virus (STRAIN A/CHICKEN/GERMANY/N/49)\",\n    11340: \"Influenza A virus (A/chicken/Japan/24(H7N7))\",\n    11357: \"Influenza A virus (STRAIN A/DUCK/HOKKAIDO/5/77)\",\n    11359: \"Influenza A virus (A/duck/Hokkaido/33/80(H3))\",\n    11360: \"Influenza A virus (A/duck/Hokkaido/7/82(H3))\",\n    11361: \"Influenza A virus (A/duck/Hokkaido/21/82(H3))\",\n    11362: \"Influenza A virus (A/duck/Hokkaido/9/85(H3))\",\n    11363: \"Influenza A virus (A/duck/Hokkaido/10/85(H3))\",\n    11369: \"Influenza A virus (STRAIN A/DUCK/NEW YORK/12/78)\",\n    11375: \"Influenza A virus (A/Dunedin/4/73(H3N2))\",\n    11384: \"Influenza A virus (A/chicken/FPV/Weybridge(H7N7))\",\n    11397: \"Influenza A virus (A/equine/Cornell/16/74(H7N7))\",\n    11408: \"Influenza A virus (STRAIN A/EQUINE/NEW MARKET/76)\",\n    11414: \"Influenza A virus (A/equine/Santiago/1/1985(H3N8))\",\n    11418: \"Influenza A virus (STRAIN A/EQUINE/TOKYO/71)\",\n    11430: \"Influenza A virus (A/mallard/Alberta/88/76(H3N8))\",\n    11432: \"Influenza A virus (STRAIN A/MALLARD/ALBERTA/827/78)\",\n    11433: \"Influenza A virus (A/mallard/Astrakhan/244/1982(H14N6))\",\n    11444: \"Influenza A virus (STRAIN A/MYNAH/HANEDA-THAI/76)\",\n    11448: \"Influenza A virus (A/parrot/Ulster/73(H7N1))\",\n    11450: \"Influenza A virus (STRAIN A/PINTAIL/ALBERTA/121/79)\",\n    11451: \"Influenza A virus (STRAIN A/PINTAIL/ALBERTA/268/78)\",\n    11452: \"Influenza A virus (STRAIN A/PINTAIL/ALBERTA/358/79)\",\n    11462: \"Influenza A virus (STRAIN A/SHEARWATER/AUSTRALIA/75)\",\n    11482: \"Influenza A virus (STRAIN A/VICTORIA/5/68)\",\n    11484: \"Influenza A virus (A/whale/Maine/1/84(H13N9))\",\n    11486: \"Influenza A virus (STRAIN A/WHALE/PACIFIC OCEAN/19/76)\",\n    11495: \"Influenza A virus (STRAIN A/SWINE/GERMANY/2/81)\",\n    11520: \"Influenza B virus\",\n    11521: \"Influenza B virus (B/Ann Arbor/1/1986)\",\n    11522: \"Influenza B virus (B/Ann Arbor/1/1966 [cold-adapted])\",\n    11523: \"Influenza B virus (B/Ann Arbor/1/1966 [wild- type])\",\n    11524: \"Influenza B virus (B/BA/78)\",\n    11525: \"Influenza B virus (STRAIN B/BEIJING/1/87)\",\n    11527: \"Influenza B virus (STRAIN B/ENGLAND/222/82)\",\n    11528: \"Influenza B virus (B/FUKUOKA/80/81)\",\n    11529: \"Influenza B virus (B/GA/86)\",\n    11530: \"Influenza B virus (STRAIN B/GL/54)\",\n    11532: \"Influenza B virus (STRAIN B/HT/84)\",\n    11534: \"Influenza B virus (STRAIN B/ID/86)\",\n    11536: \"Influenza B virus (STRAIN B/LENINGRAD/179/86)\",\n    11537: \"Influenza B virus (STRAIN B/MARYLAND/59)\",\n    11538: \"Influenza B virus (STRAIN B/MEMPHIS/6/86)\",\n    11540: \"Influenza B virus (STRAIN B/NAGASAKI/1/87)\",\n    11541: \"Influenza B virus (B/Oregon/5/80)\",\n    11542: \"Influenza B virus (STRAIN B/PA/79)\",\n    11543: \"Influenza B virus (STRAIN B/RU/69)\",\n    11545: \"Influenza B virus (STRAIN B/SINGAPORE/64)\",\n    11547: \"Influenza B virus (STRAIN B/VICTORIA/3/85)\",\n    11548: \"Influenza B virus (STRAIN B/VICTORIA/87)\",\n    11550: \"Influenza B virus (B/Yamagata/1/73)\",\n    11552: \"Influenza C virus\",\n    11553: \"Influenza C virus (C/Ann Arbor/1/50)\",\n    11554: \"Influenza C virus (C/Berlin/1/85)\",\n    11556: \"Influenza C virus (C/England/892/1983)\",\n    11557: \"Influenza C virus (C/Great Lakes/1167/1954)\",\n    11560: \"Influenza C virus (C/JJ/1950)\",\n    11564: \"Influenza C virus (C/pig/Beijing/10/1981)\",\n    11566: \"Influenza C virus (C/PIG/Beijing/439/1982)\",\n    11567: \"Influenza C virus (C/Taylor/1233/1947)\",\n    11568: \"Influenza C virus (C/Yamagata/10/1981)\",\n    11569: \"Thogoto thogotovirus\",\n    11572: \"Orthobunyavirus\",\n    11574: \"Germiston virus\",\n    11575: \"Maguari virus\",\n    11577: \"La Crosse virus\",\n    11578: \"La Crosse virus L74\",\n    11580: \"Snowshoe hare virus\",\n    11582: \"Aino virus\",\n    11583: \"HoJo virus\",\n    11584: \"Phlebovirus\",\n    11587: \"Punta Toro virus\",\n    11588: \"Rift Valley fever virus\",\n    11589: \"Rift valley fever virus (STRAIN ZH-548 M12)\",\n    11590: \"Toscana virus\",\n    11591: \"Uukuniemi virus\",\n    11594: \"Crimean-Congo hemorrhagic fever virus (isolate C68031)\",\n    11596: \"Hazara virus\",\n    11597: \"Hazara virus (isolate JC280)\",\n    11601: \"Hantaan virus Lee\",\n    11602: \"Hantaan virus 76-118\",\n    11605: \"Puumala virus Hallnas B1\",\n    11606: \"Puumala virus - Sotkamo\",\n    11607: \"Sapporo rat virus\",\n    11610: \"Seoul virus SR11\",\n    11612: \"Impatiens necrotic spot virus\",\n    11615: \"Tomato spotted wilt virus (Hawaiian isolate)\",\n    11617: \"Arenaviridae\",\n    11618: \"Arenavirus\",\n    11620: \"Lassa mammarenavirus\",\n    11621: \"Lassa virus GA391\",\n    11622: \"Lassa virus Josiah\",\n    11623: \"Lymphocytic choriomeningitis mammarenavirus\",\n    11624: \"Lymphocytic choriomeningitis virus (strain Armstrong)\",\n    11625: \"Lymphocytic choriomeningitis virus (strain Pasteur)\",\n    11626: \"Lymphocytic choriomeningitis virus (strain Traub)\",\n    11627: \"Lymphocytic choriomeningitis virus (strain WE)\",\n    11628: \"Machupo mammarenavirus\",\n    11629: \"Mopeia mammarenavirus\",\n    11631: \"Tacaribe mammarenavirus\",\n    11632: \"Retroviridae\",\n    11636: \"Reticuloendotheliosis virus\",\n    11640: \"Spumavirus\",\n    11641: \"Human foamy virus\",\n    11642: \"Simian foamy virus\",\n    11644: \"Simian foamy virus (TYPE 3 / STRAIN LK3)\",\n    11646: \"Lentivirus\",\n    11648: \"Panther lentivirus\",\n    11652: \"Primate lentivirus group\",\n    11653: \"Ovine/caprine lentivirus group\",\n    11654: \"Equine lentivirus group\",\n    11655: \"Feline lentivirus group\",\n    11656: \"Bovine lentivirus group\",\n    11657: \"Bovine immunodeficiency virus\",\n    11659: \"BIV R29-127\",\n    11660: \"Caprine arthritis encephalitis virus\",\n    11661: \"Caprine arthritis encephalitis virus strain Cork\",\n    11662: \"Caprine arthritis encephalitis virus G63\",\n    11663: \"Ovine lentivirus\",\n    11664: \"Ovine lentivirus (strain SA-OMVV)\",\n    11665: \"Equine infectious anemia virus\",\n    11666: \"Equine infectious anemia virus (CLONE P3.2-1)\",\n    11667: \"Equine infectious anemia virus (CLONE P3.2-2)\",\n    11668: \"Equine infectious anemia virus (CLONE P3.2-3)\",\n    11669: \"Equine infectious anemia virus (CLONE P3.2-5)\",\n    11670: \"Equine infectious anemia virus (CLONE 1369)\",\n    11671: \"Equine infectious anemia virus (STRAIN WSU5)\",\n    11672: \"Equine infectious anemia virus (ISOLATE WYOMING)\",\n    11673: \"Feline immunodeficiency virus\",\n    11674: \"Feline immunodeficiency virus (isolate Petaluma)\",\n    11675: \"Feline immunodeficiency virus (isolate San Diego)\",\n    11676: \"Human immunodeficiency virus 1\",\n    11678: \"Human immunodeficiency virus type 1 BH10\",\n    11679: \"Human immunodeficiency virus type 1 (CLONE 12)\",\n    11680: \"Human immunodeficiency virus type 1 (ZAIRE 3 ISOLATE)\",\n    11681: \"Human immunodeficiency virus type 1 (Z-84 ISOLATE)\",\n    11682: \"Human immunodeficiency virus type 1 (BH5 ISOLATE)\",\n    11683: \"Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)\",\n    11684: \"Human immunodeficiency virus type 1 (BH8 ISOLATE)\",\n    11685: \"HIV-1 M:B_ARV2/SF2\",\n    11686: \"Human immunodeficiency virus type 1 (BRU ISOLATE)\",\n    11687: \"Human immunodeficiency virus type 1 (CDC-451 ISOLATE)\",\n    11688: \"Human immunodeficiency virus type 1 (JRCSF ISOLATE)\",\n    11689: \"Human immunodeficiency virus type 1 (ELI ISOLATE)\",\n    11690: \"Human immunodeficiency virus type 1 (SF33 ISOLATE)\",\n    11691: \"Human immunodeficiency virus type 1 (SF162 ISOLATE)\",\n    11692: \"Human immunodeficiency virus type 1 (ZAIRE HZ321 ISOLATE)\",\n    11693: \"Human immunodeficiency virus type 1 (BRAIN ISOLATE)\",\n    11694: \"Human immunodeficiency virus type 1 (JH3 ISOLATE)\",\n    11695: \"Human immunodeficiency virus type 1 (NDK ISOLATE)\",\n    11696: \"HIV-1 M:B_MN\",\n    11697: \"Human immunodeficiency virus type 1 (MAL ISOLATE)\",\n    11698: \"Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)\",\n    11699: \"Human immunodeficiency virus type 1 (OYI ISOLATE)\",\n    11701: \"Human immunodeficiency virus type 1 (RF/HAT ISOLATE)\",\n    11702: \"Human immunodeficiency virus type 1 (SC ISOLATE)\",\n    11703: \"Human immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)\",\n    11704: \"Human immunodeficiency virus type 1 (MFA ISOLATE)\",\n    11705: \"Human immunodeficiency virus type 1 (WMJ2 ISOLATE)\",\n    11706: \"HIV-1 M:B_HXB2R\",\n    11707: \"Human immunodeficiency virus type 1 (HXB3 ISOLATE)\",\n    11708: \"Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE)\",\n    11709: \"Human immunodeficiency virus 2\",\n    11711: \"Simian immunodeficiency virus - mac\",\n    11712: \"Simian immunodeficiency virus - sm\",\n    11713: \"Human immunodeficiency virus type 2 (ISOLATE D194)\",\n    11714: \"Human immunodeficiency virus type 2 (ISOLATE BEN)\",\n    11715: \"Human immunodeficiency virus type 2 (ISOLATE CAM2)\",\n    11716: \"Human immunodeficiency virus type 2 (ISOLATE D205,7)\",\n    11717: \"Human immunodeficiency virus type 2 (ISOLATE GHANA-1)\",\n    11718: \"Human immunodeficiency virus type 2 (ISOLATE SBLISY)\",\n    11719: \"Human immunodeficiency virus type 2 (ISOLATE NIH-Z)\",\n    11720: \"Human immunodeficiency virus type 2 (ISOLATE ROD)\",\n    11721: \"Human immunodeficiency virus type 2 (ISOLATE ST)\",\n    11723: \"Simian immunodeficiency virus\",\n    11725: \"Human T-cell lymphotropic virus type 4\",\n    11726: \"Simian immunodeficiency virus - agm\",\n    11727: \"Simian immunodeficiency virus (AGM155 ISOLATE)\",\n    11728: \"Simian immunodeficiency virus (AGM266 ISOLATE)\",\n    11729: \"Simian immunodeficiency virus (AGM385 ISOLATE)\",\n    11730: \"Simian immunodeficiency virus (AGM3 ISOLATE)\",\n    11731: \"Simian immunodeficiency virus (TYO-1 ISOLATE)\",\n    11732: \"Simian immunodeficiency virus (ISOLATE GB1)\",\n    11733: \"Simian immunodeficiency virus (MM142-83 ISOLATE)\",\n    11734: \"Simian immunodeficiency virus (MM251 ISOLATE)\",\n    11735: \"Simian immunodeficiency virus - mac K6W\",\n    11736: \"Simian immunodeficiency virus (K78 ISOLATE)\",\n    11737: \"Simian immunodeficiency virus (F236/SMH4 ISOLATE) (SOOTY MANGABEY)\",\n    11738: \"Simian immunodeficiency virus (PBJ/BC13 ISOLATE) (SOOTY MANGABEY)\",\n    11742: \"Visna lentivirus (strain 1514)\",\n    11743: \"Visna lentivirus (strain 1514 / clone LV1-1KS1)\",\n    11744: \"Visna lentivirus (strain 1514 / clone LV1-1KS2)\",\n    11745: \"Human endogenous retrovirus ERV-9\",\n    11746: \"Jaagsiekte sheep retrovirus\",\n    11749: \"Intracisternal A-particles\",\n    11750: \"Chinese hamster Intracisternal A-particle\",\n    11751: \"Chinese hamster Intracisternal A-particle CHIAP34\",\n    11752: \"Golden hamster intracisternal A-particle H18\",\n    11753: \"Mouse intracisternal A-particle MIA14\",\n    11754: \"Mouse intracisternal A-particle MIAIL3\",\n    11757: \"Mouse mammary tumor virus\",\n    11758: \"Mouse mammary tumor virus (STRAIN BR6)\",\n    11759: \"Mouse mammary tumor virus (STRAIN C3H)\",\n    11760: \"Mouse mammary tumor virus (STRAIN GR)\",\n    11764: \"Baboon endogenous virus strain M7\",\n    11765: \"Feline endogenous virus\",\n    11766: \"Feline endogenous virus ECE1\",\n    11767: \"Feline endogenous virus RD114\",\n    11768: \"Feline leukemia virus\",\n    11769: \"Feline leukemia virus strain A/Glasgow-1\",\n    11772: \"Feline sarcoma virus\",\n    11774: \"Gardner-Arnstein feline sarcoma virus\",\n    11775: \"Feline sarcoma virus (STRAIN GARDNER-RASHEED)\",\n    11776: \"Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 2)\",\n    11777: \"Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)\",\n    11778: \"Feline sarcoma virus (STRAIN MCDONOUGH)\",\n    11779: \"Feline sarcoma virus (STRAIN SM)\",\n    11780: \"Snyder-Theilen feline sarcoma virus\",\n    11783: \"Friend mink cell focus-forming virus\",\n    11784: \"Rauscher mink cell focus-forming virus\",\n    11785: \"Mink cell focus-forming virus\",\n    11786: \"Murine leukemia virus\",\n    11787: \"Radiation murine leukemia virus\",\n    11788: \"Abelson murine leukemia virus\",\n    11790: \"AKT8 murine leukemia virus\",\n    11791: \"AKR (endogenous) murine leukemia virus\",\n    11792: \"Cas-Br-E murine leukemia virus\",\n    11793: \"Cas NS-1 murine leukemia virus\",\n    11794: \"Duplan murine leukemia virus\",\n    11795: \"Friend murine leukemia virus\",\n    11796: \"Friend murine leukemia virus (ISOLATE 57)\",\n    11797: \"Friend murine leukemia virus (ISOLATE FB29)\",\n    11798: \"Friend murine leukemia virus (ISOLATE PVC-211)\",\n    11799: \"HoMuLV murine leukemia virus\",\n    11800: \"Kirsten murine leukemia virus\",\n    11801: \"Moloney murine leukemia virus\",\n    11803: \"BALB murine sarcoma virus\",\n    11804: \"Cas-NS-1 murine sarcoma virus\",\n    11805: \"FBJ murine osteosarcoma virus\",\n    11807: \"Harvey murine sarcoma virus\",\n    11808: \"Kirsten murine sarcoma virus\",\n    11809: \"Moloney murine sarcoma virus\",\n    11810: \"Moloney murine sarcoma virus (STRAIN HT-1)\",\n    11811: \"Moloney murine sarcoma virus (STRAIN M1)\",\n    11812: \"Murine sarcoma virus 3611\",\n    11813: \"Myeloproliferative sarcoma virus\",\n    11814: \"Myeloproliferative sarcoma virus (CLONE TS159)\",\n    11815: \"NS.C58 murine sarcoma virus\",\n    11816: \"Rasheed rat sarcoma virus\",\n    11818: \"Simian sarcoma-associated virus\",\n    11819: \"Spleen focus-forming virus\",\n    11820: \"Friend spleen focus-forming virus\",\n    11821: \"Rauscher spleen focus-forming virus\",\n    11823: \"GR mouse mammary tumor virus\",\n    11824: \"Gardner-Arnstein feline leukemia oncovirus B\",\n    11827: \"Human endogenous retrovirus\",\n    11829: \"Macaca mulatta type C retrovirus\",\n    11830: \"Murine osteosarcoma virus\",\n    11832: \"Murine retrovirus SL3-3\",\n    11833: \"N-tropic ecotropic endogenous retrovirus\",\n    11834: \"RD114 retrovirus\",\n    11836: \"Spleen necrosis virus\",\n    11837: \"Xenotropic murine leukemia virus\",\n    11838: \"Chimpanzee type C endogenous retrovirus\",\n    11840: \"Gibbon ape leukemia virus\",\n    11841: \"Gross passage A murine leukemia virus\",\n    11843: \"Macaca endogenous retrovirus\",\n    11845: \"Mouse RFV endogenous retrovirus\",\n    11846: \"Murine non-leukeminogenic retrovirus\",\n    11847: \"Murine retrovirus SL3-2\",\n    11848: \"Rat sarcoma virus\",\n    11849: \"Soule murine leukemia virus\",\n    11850: \"Tikaut murine leukemia virus\",\n    11854: \"Thymotropic retrovirus type B\",\n    11855: \"Mason-Pfizer monkey virus\",\n    11856: \"Squirrel monkey retrovirus\",\n    11857: \"Squirrel monkey retrovirus-H\",\n    11859: \"Avian endogenous virus ev-1\",\n    11861: \"Avian erythroblastosis virus\",\n    11862: \"Avian erythroblastosis virus (strain Sloan-Kettering)\",\n    11863: \"Avian erythroblastosis virus (strain S13)\",\n    11864: \"Avian leukosis virus\",\n    11865: \"Rous-associated virus\",\n    11866: \"Avian myeloblastosis virus\",\n    11867: \"Avian myelocytomatosis virus\",\n    11868: \"Avian myelocytomatosis virus 29\",\n    11869: \"Avian myelocytomatosis virus CMII\",\n    11870: \"Avian carcinoma Mill Hill virus 2\",\n    11871: \"Avian myelocytomatosis virus OK10\",\n    11873: \"Avian musculoaponeurotic fibrosarcoma virus AS42\",\n    11874: \"Avian retrovirus IC10\",\n    11875: \"Avian retrovirus NK24\",\n    11876: \"Avian sarcoma virus\",\n    11877: \"Avian sarcoma virus 17\",\n    11878: \"Avian sarcoma virus CT10\",\n    11879: \"Avian sarcoma virus PR2257\",\n    11880: \"Avian sarcoma virus PRCII\",\n    11881: \"Avian sarcoma virus S1\",\n    11882: \"Avian sarcoma virus S2\",\n    11884: \"Y73 sarcoma virus\",\n    11885: \"Fujinami sarcoma virus\",\n    11886: \"Rous sarcoma virus\",\n    11887: \"Rous sarcoma virus (strain H-19)\",\n    11888: \"Rous sarcoma virus - Prague C\",\n    11889: \"Rous sarcoma virus (strain Schmidt-Ruppin)\",\n    11894: \"Avian sarcoma virus RASV1441\",\n    11899: \"Avian spleen necrosis virus\",\n    11901: \"Bovine leukemia virus\",\n    11902: \"Bovine leukemia virus (AMERICAN ISOLATE FLK)\",\n    11903: \"Bovine leukemia virus (AUSTRALIAN ISOLATE)\",\n    11904: \"Bovine leukemia virus (AMERICAN ISOLATE VDM)\",\n    11905: \"Bovine leukemia virus (BELGIUM ISOLATE LB285)\",\n    11906: \"Bovine leukemia virus (BELGIUM ISOLATE LB59)\",\n    11907: \"Bovine leukemia virus (JAPANESE ISOLATE BLV-1)\",\n    11908: \"Human T-cell leukemia virus type I\",\n    11909: \"Human T-lymphotropic virus 2\",\n    11913: \"Avian leukemia virus e26\",\n    11915: \"Avian myelocytomatosis virus hbi\",\n    11916: \"Avian retrovirus mh2e21\",\n    11921: \"Feline leukemia provirus (clone CFE-16)\",\n    11922: \"Feline leukemia provirus (clone CFE-6)\",\n    11923: \"Feline leukemia provirus ftt\",\n    11926: \"Human T-cell lymphotrophic virus type 1 (strain ATK)\",\n    11927: \"Human T-cell lymphotrophic virus type 1 (Caribbean isolate)\",\n    11928: \"Human T-cell lymphotrophic virus type 1 (isolate MT-2)\",\n    11932: \"Mouse Intracisternal A-particle\",\n    11935: \"Mink cell focus-forming murine leukemia virus\",\n    11936: \"Mink cell focus-forming murine leukemia virus (ISOLATE CI-3)\",\n    11938: \"Rauscher murine leukemia virus\",\n    11942: \"Simian retrovirus 1\",\n    11945: \"Avian endogenous virus\",\n    11946: \"Avian leukemia virus\",\n    11948: \"Rous-associated virus type 2\",\n    11949: \"Rous-associated virus type 0\",\n    11950: \"Rous-associated virus type 1\",\n    11955: \"Avian retrovirus\",\n    11957: \"Avian sarcoma virus 1\",\n    11958: \"Avian carcinoma virus\",\n    11960: \"Avian myeloblastosis-associated virus\",\n    11961: \"Lymphoproliferative disease virus\",\n    11963: \"Human spumaretrovirus\",\n    11965: \"Simian foamy virus 3\",\n    11966: \"Aids-associated retrovirus\",\n    11968: \"IAP H10\",\n    11970: \"Woolly monkey sarcoma virus\",\n    11971: \"Avian hemangioma-inducing virus\",\n    11973: \"Myeloproliferative leukemia virus\",\n    11974: \"Caliciviridae\",\n    11976: \"Rabbit hemorrhagic disease virus\",\n    11977: \"Rabbit hemorrhagic disease virus-V351\",\n    11978: \"Feline calicivirus\",\n    11979: \"Feline calicivirus strain CFI/68 FIV\",\n    11980: \"Feline calicivirus strain Japanese F4\",\n    11981: \"Feline calicivirus strain F9\",\n    11982: \"San Miguel sea lion virus\",\n    11983: \"Norwalk virus\",\n    11984: \"Southampton virus\",\n    11985: \"Carmovirus\",\n    11986: \"Carnation mottle virus\",\n    11987: \"Melon necrotic spot virus\",\n    11988: \"Turnip crinkle virus\",\n    11989: \"Leviviridae\",\n    11990: \"Levivirus\",\n    12008: \"Allolevivirus\",\n    12014: \"Enterobacteria phage BO1\",\n    12015: \"Enterobacteria phage isolate BZ13\",\n    12016: \"Enterobacteria phage f2\",\n    12017: \"Enterobacteria phage fr\",\n    12018: \"Enterobacteria phage GA\",\n    12019: \"Enterobacteria phage JP34\",\n    12020: \"Enterobacteria phage JP501\",\n    12021: \"Enterobacteria phage KU1\",\n    12022: \"Enterobacteria phage MS2\",\n    12023: \"Pseudomonas phage PP7\",\n    12024: \"Pseudomonas phage PRR1\",\n    12026: \"Enterobacteria phage R17\",\n    12027: \"Enterobacteria phage SP\",\n    12029: \"Enterobacteria phage TH1\",\n    12030: \"Enterobacteria phage TW19\",\n    12031: \"Enterobacteria phage TW28\",\n    12032: \"Enterobacteria phage VK\",\n    12034: \"Enterobacteria phage fr1\",\n    12036: \"Luteovirus\",\n    12037: \"Barley yellow dwarf virus\",\n    12039: \"Barley yellow dwarf virus (ISOLATE NY-RPV)\",\n    12041: \"Bean leafroll virus\",\n    12042: \"Beet western yellows virus\",\n    12043: \"Beet western yellows virus-FL1\",\n    12044: \"Beet western yellows virus (ISOLATE GB1)\",\n    12045: \"Potato leafroll virus\",\n    12046: \"Potato leafroll virus (STRAIN 1)\",\n    12047: \"Potato leafroll virus (STRAIN ROWHANI)\",\n    12048: \"Potato leafroll virus (STRAIN WAGENINGEN)\",\n    12049: \"Soybean dwarf virus\",\n    12050: \"Waikavirus\",\n    12051: \"Marafivirus\",\n    12054: \"unidentified tobacco necrosis virus\",\n    12055: \"Tobacco necrosis virus A\",\n    12056: \"Tobacco necrosis virus D\",\n    12057: \"Sequivirus\",\n    12058: \"Picornaviridae\",\n    12059: \"Enterovirus\",\n    12060: \"Echovirus E9\",\n    12062: \"Echovirus E6\",\n    12063: \"Human parechovirus 1\",\n    12064: \"Enterovirus E\",\n    12065: \"Bovine enterovirus strain VG-5-27\",\n    12066: \"Coxsackievirus\",\n    12067: \"Coxsackievirus A9\",\n    12068: \"Human coxsackievirus A9 (strain Griggs)\",\n    12069: \"Coxsackievirus A21\",\n    12070: \"Human coxsackievirus A21 Coe\",\n    12071: \"Coxsackievirus B1\",\n    12072: \"Coxsackievirus B3\",\n    12073: \"Coxsackievirus B4\",\n    12074: \"Coxsackievirus B5\",\n    12075: \"Swine vesicular disease virus\",\n    12076: \"Swine vesicular disease virus (STRAIN H/3 '76)\",\n    12077: \"Swine vesicular disease virus (STRAIN UKG/27/72)\",\n    12078: \"Echovirus E11\",\n    12079: \"unidentified poliovirus\",\n    12080: \"Human poliovirus 1\",\n    12081: \"Human poliovirus 1 Mahoney\",\n    12082: \"Human poliovirus 1 strain Sabin\",\n    12083: \"Human poliovirus 2\",\n    12084: \"Poliovirus type 2 strain Lansing\",\n    12085: \"Poliovirus type 2 strain W-2\",\n    12086: \"Human poliovirus 3\",\n    12087: \"Poliovirus type 3 (strain 23127)\",\n    12088: \"Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)\",\n    12089: \"Coxsackievirus A24\",\n    12090: \"Human enterovirus 70\",\n    12091: \"Hepatovirus\",\n    12092: \"Hepatovirus A\",\n    12093: \"Human hepatitis A virus Shanghai/LCDC-1/1984\",\n    12097: \"Human hepatitis A virus Hu/Costa Rica/CR326/1960\",\n    12098: \"Human hepatitis A virus Hu/Australia/HM175/1976\",\n    12099: \"Human hepatitis A virus Hu/Los Angelos/LA/1975\",\n    12100: \"Human hepatitis A virus Hu/Northern Africa/MBB/1978\",\n    12101: \"Simian hepatitis A virus\",\n    12102: \"Simian hepatitis A virus Cercopithecus/Kenya/AGM-27/1985\",\n    12103: \"Cardiovirus\",\n    12104: \"Encephalomyocarditis virus\",\n    12105: \"Encephalomyocarditis virus strain emc-b nondiabetogenic\",\n    12106: \"Encephalomyocarditis virus strain emc-d diabetogenic\",\n    12107: \"Mengo virus\",\n    12109: \"Aphthovirus\",\n    12110: \"Foot-and-mouth disease virus\",\n    12111: \"Foot-and-mouth disease virus - type A\",\n    12112: \"Foot-and-mouth disease virus (strain A10-61)\",\n    12113: \"Foot-and-mouth disease virus (strain A5)\",\n    12114: \"Foot-and-mouth disease virus (strain A12)\",\n    12115: \"Foot-and-mouth disease virus (strain A24 Cruzeiro)\",\n    12116: \"Foot-and-mouth disease virus - type C\",\n    12117: \"Foot-and-mouth disease virus (strain C3 Indaial)\",\n    12118: \"Foot-and-mouth disease virus - type O\",\n    12120: \"Foot-and-mouth disease virus (strain C1-Santa Pau)\",\n    12121: \"Foot-and-mouth disease virus C1\",\n    12122: \"Foot-and-mouth disease virus - type SAT 1\",\n    12123: \"Foot-and-mouth disease virus - type SAT 3\",\n    12124: \"Theiler's encephalomyelitis virus\",\n    12125: \"Theiler's encephalomyelitis virus (STRAIN BEAN 8386)\",\n    12126: \"Theiler's encephalomyelitis virus (STRAIN DA)\",\n    12127: \"Theiler's murine encephalomyeltits virus GDVII\",\n    12129: \"Human rhinovirus 1B\",\n    12130: \"Human rhinovirus A2\",\n    12131: \"Rhinovirus B14\",\n    12132: \"Human rhinovirus A89\",\n    12134: \"Human rhinovirus 1A\",\n    12135: \"Human rhinovirus A23\",\n    12136: \"Cricket paralysis virus\",\n    12137: \"Sobemovirus\",\n    12138: \"Maize chlorotic mottle virus\",\n    12139: \"Southern bean mosaic virus\",\n    12141: \"Tombusvirus\",\n    12142: \"Artichoke mottled crinkle virus\",\n    12143: \"Cucumber necrosis virus\",\n    12144: \"Cymbidium ringspot virus\",\n    12145: \"Tomato bushy stunt virus\",\n    12146: \"Tomato bushy stunt virus (STRAIN BS-3)\",\n    12147: \"Tomato bushy stunt virus (STRAIN CHERRY)\",\n    12148: \"Tymovirus\",\n    12149: \"Belladonna mottle virus\",\n    12150: \"Cacao yellow mosaic virus\",\n    12151: \"Eggplant mosaic virus\",\n    12152: \"Erysimum latent virus\",\n    12153: \"Ononis yellow mosaic virus\",\n    12154: \"Turnip yellow mosaic virus\",\n    12155: \"Turnip yellow mosaic virus (Australian isolate)\",\n    12157: \"Clitoria yellow vein virus\",\n    12158: \"Kennedya yellow mosaic virus\",\n    12160: \"Closterovirus\",\n    12161: \"Beet yellows virus\",\n    12162: \"Citrus tristeza virus\",\n    12163: \"Carlavirus\",\n    12164: \"Carnation latent virus\",\n    12165: \"Chrysanthemum virus B\",\n    12166: \"Poplar mosaic virus\",\n    12167: \"Potato virus M\",\n    12168: \"Potato virus M (strain Russian)\",\n    12169: \"Potato virus S\",\n    12170: \"Potato virus S (strain Peruvian)\",\n    12171: \"Helenium virus S\",\n    12172: \"Shallot latent virus\",\n    12173: \"Lily symptomless virus\",\n    12174: \"Capillovirus\",\n    12175: \"Apple chlorotic leaf spot virus\",\n    12176: \"Potexvirus\",\n    12177: \"Clover yellow mosaic virus\",\n    12178: \"Cymbidium mosaic virus\",\n    12179: \"Foxtail mosaic virus\",\n    12180: \"Narcissus mosaic virus\",\n    12181: \"Papaya mosaic virus\",\n    12182: \"Potato aucuba mosaic virus\",\n    12183: \"Potato virus X\",\n    12184: \"Potato virus X (strain CP)\",\n    12185: \"Potato virus X (strain X3)\",\n    12186: \"Potato virus X (strain XC)\",\n    12187: \"Strawberry mild yellow edge virus\",\n    12188: \"White clover mosaic virus\",\n    12189: \"White clover mosaic virus (strain M)\",\n    12190: \"White clover mosaic virus (strain O)\",\n    12194: \"Lily virus X\",\n    12195: \"Potyvirus\",\n    12196: \"Bean common mosaic virus\",\n    12197: \"Bean yellow mosaic virus\",\n    12198: \"Clover yellow vein virus\",\n    12199: \"Cowpea aphid-borne mosaic virus\",\n    12200: \"Garlic mosaic virus\",\n    12201: \"Gloriosa stripe mosaic virus\",\n    12202: \"Lettuce mosaic virus\",\n    12203: \"Maize dwarf mosaic virus\",\n    12204: \"Ornithogalum mosaic virus\",\n    12205: \"Papaya ringspot virus\",\n    12206: \"Papaya ringspot virus P\",\n    12207: \"Papaya ringspot virus W\",\n    12208: \"Pea seed-borne mosaic virus\",\n    12209: \"Pepper mottle virus\",\n    12210: \"Pepper severe mosaic virus\",\n    12211: \"Plum pox virus\",\n    12212: \"Plum pox virus D\",\n    12213: \"Plum pox virus isolate NAT\",\n    12214: \"Plum pox virus strain Rankovic\",\n    12215: \"Potato virus A\",\n    12216: \"Potato virus Y\",\n    12217: \"Potato virus Y strain C\",\n    12218: \"Potato virus Y strain Chinese isolate\",\n    12219: \"Potato virus Y strain N\",\n    12220: \"Potato virus Y strain O\",\n    12221: \"Potato virus Y strain YO\",\n    12222: \"Soybean mosaic virus\",\n    12223: \"Soybean mosaic virus N\",\n    12224: \"Sugarcane mosaic virus\",\n    12225: \"Sugarcane mosaic virus SC\",\n    12226: \"Tamarillo mosaic virus\",\n    12227: \"Tobacco etch virus\",\n    12228: \"Tobacco vein mottling virus\",\n    12229: \"Tulip breaking virus\",\n    12230: \"Turnip mosaic virus\",\n    12232: \"Zucchini yellow mosaic virus\",\n    12233: \"South African passiflora virus\",\n    12234: \"Tobamovirus\",\n    12235: \"Cucumber green mottle mosaic virus\",\n    12236: \"Cucumber green mottle mosaic virus (watermelon strain SH)\",\n    12237: \"Cucumber green mottle mosaic virus (watermelon strain W)\",\n    12238: \"Odontoglossum ringspot virus\",\n    12239: \"Pepper mild mottle virus\",\n    12240: \"Sunn-hemp mosaic virus\",\n    12241: \"Tobacco mild green mosaic virus\",\n    12242: \"Tobacco mosaic virus\",\n    12243: \"Tobacco mosaic virus (vulgare)\",\n    12244: \"Tobacco mosaic virus strain 06\",\n    12246: \"Tobacco mosaic virus strain Dahlemense\",\n    12247: \"Tobacco mosaic virus strain ER\",\n    12248: \"Tobacco mosaic virus strain HR\",\n    12249: \"Tobacco mosaic virus strain Kokubu\",\n    12250: \"Tobacco mosaic virus (strain O)\",\n    12251: \"Tobacco mosaic virus strain OM\",\n    12252: \"Tobacco mosaic virus strain tomato/L\",\n    12253: \"Tomato mosaic virus\",\n    12256: \"Beet necrotic yellow vein mosaic virus F2\",\n    12257: \"Beet necrotic yellow vein mosaic virus G1\",\n    12258: \"Comovirus\",\n    12259: \"Andean potato mottle virus\",\n    12260: \"Bean pod mottle virus\",\n    12261: \"Cowpea severe mosaic virus\",\n    12262: \"Red clover mottle virus\",\n    12263: \"Squash mosaic virus\",\n    12264: \"Cowpea mosaic virus\",\n    12266: \"Dianthovirus\",\n    12267: \"Red clover necrotic mosaic virus\",\n    12268: \"Carnation ringspot virus\",\n    12269: \"Fabavirus\",\n    12270: \"Nepovirus\",\n    12271: \"Arabis mosaic virus\",\n    12273: \"Grapevine chrome mosaic virus\",\n    12274: \"Grapevine fanleaf virus\",\n    12275: \"Tomato black ring virus\",\n    12276: \"Tomato black ring virus (STRAIN C)\",\n    12277: \"Tomato black ring virus (STRAIN E)\",\n    12278: \"Tomato black ring virus (STRAIN L)\",\n    12280: \"Tomato ringspot virus\",\n    12281: \"Tomato ringspot virus (isolate raspberry)\",\n    12282: \"Tobacco ringspot virus\",\n    12283: \"Nodaviridae\",\n    12285: \"Black beetle virus\",\n    12286: \"Boolarra virus\",\n    12287: \"Flock House virus\",\n    12288: \"Nodamura virus\",\n    12289: \"Enamovirus\",\n    12291: \"Furovirus\",\n    12292: \"Nicotiana velutina mosaic virus\",\n    12293: \"Tobravirus\",\n    12294: \"Pea early-browning virus\",\n    12295: \"Tobacco rattle virus\",\n    12296: \"Tobacco rattle virus-CAM\",\n    12297: \"Tobacco rattle virus-PSG\",\n    12298: \"Tobacco rattle virus-SYM\",\n    12299: \"Tobacco rattle virus-TCM\",\n    12300: \"Bromovirus\",\n    12301: \"Broad bean mottle virus\",\n    12302: \"Brome mosaic virus\",\n    12303: \"Cowpea chlorotic mottle virus\",\n    12304: \"Cucumovirus\",\n    12305: \"Cucumber mosaic virus\",\n    12306: \"Cucumber mosaic virus (strain C)\",\n    12307: \"Cucumber mosaic virus (strain FNY)\",\n    12308: \"Cucumber mosaic virus (strain I17F)\",\n    12309: \"Cucumber mosaic virus (strain O)\",\n    12310: \"Cucumber mosaic virus (strain Q)\",\n    12311: \"Cucumber mosaic virus (strain WL)\",\n    12312: \"Cucumber mosaic virus (strain Y)\",\n    12313: \"Peanut stunt virus\",\n    12314: \"Peanut stunt virus (strain J)\",\n    12315: \"Tomato aspermy virus\",\n    12316: \"Ilarvirus\",\n    12317: \"Tobacco streak virus\",\n    12318: \"Tobacco streak virus (strain WC)\",\n    12319: \"Apple mosaic virus\",\n    12320: \"Alfamovirus\",\n    12321: \"Alfalfa mosaic virus\",\n    12322: \"Alfalfa mosaic virus (strain 425 / isolate Leiden)\",\n    12323: \"Alfalfa mosaic virus (strain 425 / isolate Madison)\",\n    12324: \"Alfalfa mosaic virus (strain Strasbourg)\",\n    12325: \"Alfalfa mosaic virus (strain YSMV)\",\n    12326: \"Hordeivirus\",\n    12327: \"Barley stripe mosaic virus\",\n    12328: \"Poa semilatent virus\",\n    12329: \"Tenuivirus\",\n    12330: \"Maize stripe tenuivirus\",\n    12331: \"Rice stripe tenuivirus\",\n    12332: \"Rice hoja blanca tenuivirus\",\n    12333: \"unclassified bacterial viruses\",\n    12335: \"Nocardia phage NJL\",\n    12336: \"Clostridium phage c-st\",\n    12340: \"Enterobacteria phage 933J\",\n    12342: \"Xanthomonas phage Cf16\",\n    12344: \"Streptococcus phage Cp-5\",\n    12345: \"Bacillus virus GA1\",\n    12347: \"Actinophage JHJ-1\",\n    12348: \"Lactobacillus phage LL-H\",\n    12349: \"Phage M13mp7\",\n    12350: \"Phage M13mp8\",\n    12352: \"Bacillus phage M2Y\",\n    12353: \"Escherichia phage RB69\",\n    12354: \"Enterobacteria phage ST\",\n    12356: \"Lactococcus phage phiUS3\",\n    12357: \"Bacillus phage Z\",\n    12360: \"Staphylococcus virus 11\",\n    12366: \"Streptococcus pyogenes phage H4489A\",\n    12371: \"Phage h30\",\n    12374: \"Lactococcus phage\",\n    12375: \"Lactococcus phage (ISOLATE 7-9)\",\n    12381: \"Klebsiella phage No. 11\",\n    12386: \"Lactococcus phage mi7-9\",\n    12387: \"Lactococcus phage F4-1\",\n    12388: \"Mycobacterium phage FRAT1\",\n    12390: \"Lactococcus phage phiLC3\",\n    12392: \"Lactobacillus phage mv4\",\n    12397: \"Bacillus phage H2\",\n    12402: \"Streptococcus phage EJ-1\",\n    12403: \"Leuconostoc phage P32\",\n    12404: \"Leuconostoc phage P37\",\n    12405: \"Leuconostoc phage P54\",\n    12406: \"Leuconostocphage PAt5-12\",\n    12407: \"Salmonella virus PsP3\",\n    12408: \"Leuconostoc phage PZt11-15\",\n    12409: \"Clostridium phage d-16 phi\",\n    12412: \"Staphylococcus phage phi-42\",\n    12413: \"Lactococcusphage phi7-9\",\n    12417: \"Lactobacillus phage phiadh\",\n    12420: \"Filamentous phage\",\n    12424: \"Phage 13\",\n    12425: \"Phage 16\",\n    12426: \"Salmonella phage 5\",\n    12427: \"Lactococcus lactis phage phi 197\",\n    12428: \"Retronphage phi R73\",\n    12429: \"unclassified viruses\",\n    12430: \"Garlic virus D\",\n    12431: \"Garlic virus C\",\n    12432: \"Garlic virus B\",\n    12433: \"Garlic virus A\",\n    12435: \"Sugarcane bacilliform virus\",\n    12436: \"Cucumber mosaic virus satellite RNA\",\n    12438: \"AKT8 retrovirus\",\n    12439: \"20S RNA replicon\",\n    12440: \"Non-A, non-B hepatitis virus\",\n    12441: \"Kilham rat virus\",\n    12444: \"Satellite tobacco necrosis virus 2\",\n    12445: \"Satellite tobacco necrosis virus 1\",\n    12450: \"Saccharomyces cerevisiae killer virus M1\",\n    12451: \"Raspberry bushy dwarf virus\",\n    12452: \"Flame chlorosis virus-like agent\",\n    12455: \"Borna disease virus\",\n    12456: \"Human astrovirus 1\",\n    12458: \"Garlic latent virus\",\n    12461: \"Hepatitis E virus\",\n    12465: \"Barley yellow mosaic virus\",\n    12466: \"Barley mild mosaic virus\",\n    12468: \"Maus-Elberfeld virus\",\n    12470: \"Lucerne transient streak virus\",\n    12471: \"Solanum nodiflorum mottle virus\",\n    12472: \"Subterranean clover mottle virus\",\n    12473: \"Velvet tobacco mottle virus\",\n    12474: \"Coconut foliar decay virus\",\n    12475: \"Hepatitis delta virus\",\n    12477: \"Killer virus of S.cerevisiae\",\n    12478: \"Cryphonectria hypovirus 1-EP713\",\n    12480: \"African green monkey polyomavirus\",\n    12499: \"Chorella virus\",\n    12509: \"Human herpesvirus 4 type 2\",\n    12513: \"Hepatitis B virus 2\",\n    12519: \"Intracisternal A-type particle IAP\",\n    12521: \"JDV virus\",\n    12524: \"Junonia coenia densovirus\",\n    12530: \"Leishmania RNA virus 1 - 4\",\n    12538: \"Mokola lyssavirus\",\n    12541: \"Nudaurelia capensis omega virus\",\n    12542: \"Omsk hemorrhagic fever virus\",\n    12557: \"Seoul virus 80-39\",\n    12558: \"Sesbania mosaic virus\",\n    12571: \"Vilyuisk human encephalomyelitis virus\",\n    12578: \"Rotavirus str. I321\",\n    12583: \"Avian retrovirus FH3\",\n    12584: \"Avian rotavirus Ty-1\",\n    12585: \"Banana bunchy top virus\",\n    12615: \"Cherry leaf roll virus\",\n    12618: \"Chicken anemia virus\",\n    12627: \"Cowpea mottle virus\",\n    12637: \"Dengue virus\",\n    12639: \"Duck hepatitis B virus\",\n    12643: \"Ectromelia virus\",\n    12645: \"Avian endogenous virus ev-21\",\n    12647: \"Epizootic hemorrhagic disease of deer virus\",\n    12657: \"Equid gammaherpesvirus 2\",\n    12663: \"Feline coronavirus\",\n    12672: \"Frog erythrocytic virus\",\n    12675: \"Groundnut ringspot virus\",\n    12701: \"Human astrovirus 2\",\n    12705: \"Adult diarrheal rotavirus\",\n    12721: \"Human immunodeficiency virus\",\n    12730: \"Human respirovirus 1\",\n    12733: \"Human endogenous retrovirus 1\",\n    12742: \"Infectious flacherie virus\",\n    12750: \"Visna/maedi virus EV1\",\n    12760: \"Murine hepatitis virus strain 4\",\n    12777: \"Parsnip yellow fleck virus\",\n    12783: \"Pear blister canker viroid\",\n    12795: \"Porcine pestivirus\",\n    12804: \"Puma lentivirus\",\n    12809: \"Raspberry ringspot virus\",\n    12811: \"Reovirus S4\",\n    12814: \"Respiratory syncytial virus\",\n    12830: \"Simian immunodeficiency virus - mnd\",\n    12844: \"Sweet potato feathery mottle virus\",\n    12845: \"Swine influenza virus\",\n    12851: \"Tomato chlorotic spot virus\",\n    12870: \"Variola major virus\",\n    12877: \"Satellites\",\n    12881: \"Satellite tobacco mosaic virus\",\n    12885: \"Tomato apical stunt viroid\",\n    12886: \"Dapple plum and peach fruit disease viroid\",\n    12887: \"Dapple peach fruit disease viroid\",\n    12888: \"Tomato planta macho viroid\",\n    12889: \"Coconut tinangaja viroid\",\n    12890: \"Citrus exocortis viroid\",\n    12892: \"Potato spindle tuber viroid\",\n    12893: \"Hop stunt viroid\",\n    12894: \"Peach latent mosaic viroid\",\n    12895: \"Apple scar skin viroid\",\n    12896: \"Avocado sunblotch viroid\",\n    12897: \"Chrysanthemum stunt viroid\",\n    12898: \"Citrus bark cracking viroid\",\n    12899: \"Coleus blumei viroid\",\n    12901: \"Columnea latent viroid\",\n    12902: \"Hop stunt viroid - cucumber\",\n    12903: \"Grapevine viroid\",\n    12904: \"Grapevine yellow speckle viroid 1\",\n    12905: \"Grapevine yellow speckle viroid\",\n    12906: \"Citrus bent leaf viroid\",\n    12907: \"Hop latent viroid\",\n    12908: \"unclassified sequences\",\n    12912: \"Acanthurus\",\n    12913: \"Acanthurus nigrofuscus\",\n    12914: \"Acidianus\",\n    12915: \"Acidianus infernus\",\n    12916: \"Acidovorax\",\n    12917: \"Acidovorax facilis\",\n    12920: \"Aeshna\",\n    12921: \"Aeshna cyanea\",\n    12922: \"Aiptasia\",\n    12924: \"Aiptasia pulchella\",\n    12927: \"Alviniconcha\",\n    12928: \"Alviniconcha hessleri\",\n    12929: \"Amazona\",\n    12930: \"Amazona aestiva\",\n    12934: \"Thiocapsa pendens\",\n    12939: \"Anemia\",\n    12940: \"Anemia phyllitidis\",\n    12941: \"Aphanocladium\",\n    12942: \"Aphanocladium album\",\n    12943: \"Aptostichus\",\n    12944: \"Apomastus schlingeri\",\n    12945: \"Aratinga\",\n    12946: \"Psittacara erythrogenys\",\n    12947: \"Aristolochia\",\n    12948: \"Aristolochia gigantea\",\n    12949: \"Aristolochia macrophylla\",\n    12952: \"Asimina\",\n    12953: \"Asimina triloba\",\n    12956: \"Atta\",\n    12957: \"Atta cephalotes\",\n    12958: \"Axinella\",\n    12959: \"Axinella polypoides\",\n    12960: \"Azoarcus\",\n    12963: \"Bathydraco\",\n    12964: \"Bathydraco marri\",\n    12965: \"Bathymodiolus\",\n    12966: \"Bathymodiolus thermophilus\",\n    12967: \"Blastocystis\",\n    12968: \"Blastocystis hominis\",\n    12979: \"Butea\",\n    12981: \"Cacatua\",\n    12983: \"Cacatua goffiniana\",\n    12984: \"Cadra\",\n    12985: \"Cadra cautella\",\n    12989: \"Carpinus\",\n    12990: \"Carpinus betulus\",\n    12991: \"Carpinus caroliniana\",\n    12992: \"Cassiopea\",\n    12993: \"Cassiopea xamachana\",\n    12996: \"Cestum\",\n    12997: \"Cestum veneris\",\n    12998: \"Chaitophorus\",\n    12999: \"Chaitophorus viminalis\",\n    13000: \"Chalara\",\n    13001: \"Thielaviopsis paradoxa\",\n    13005: \"Chloranthus\",\n    13006: \"Chloranthus spicatus\",\n    13007: \"Chloranthus japonicus\",\n    13008: \"Chorthippus\",\n    13010: \"Circaea\",\n    13011: \"Circaea cordata\",\n    13012: \"Clarias\",\n    13013: \"Clarias gariepinus\",\n    13015: \"Codakia\",\n    13016: \"Codakia orbicularis\",\n    13020: \"Creatonotos\",\n    13021: \"Creatonotos transiens\",\n    13022: \"Culcita\",\n    13023: \"Calochlaena dubia\",\n    13024: \"Curculio\",\n    13025: \"Curculio caryae\",\n    13028: \"Cynoscion\",\n    13029: \"Cynoscion nebulosus\",\n    13034: \"Dactylococcopsis\",\n    13035: \"Dactylococcopsis salina PCC 8305\",\n    13036: \"Danaus\",\n    13037: \"Danaus plexippus\",\n    13038: \"Daubentonia\",\n    13039: \"Diaprepes\",\n    13040: \"Diaprepes abbreviatus\",\n    13043: \"Duchesnea\",\n    13044: \"Potentilla indica\",\n    13047: \"Echinodorus\",\n    13048: \"Echinodorus cordifolius\",\n    13049: \"Eleutheria\",\n    13050: \"Eleutheria dichotoma\",\n    13052: \"Engiscaptomyza\",\n    13053: \"Scaptomyza crassifemur\",\n    13054: \"Epilobium\",\n    13055: \"Chamaenerion angustifolium\",\n    13063: \"Euscelidius\",\n    13064: \"Euscelidius variegatus\",\n    13067: \"Forficula\",\n    13068: \"Forficula auricularia\",\n    13069: \"Fuchsia\",\n    13070: \"Fuchsia triphylla\",\n    13073: \"Geophagus\",\n    13074: \"Geophagus steindachneri\",\n    13075: \"Globicatella\",\n    13076: \"Globicatella sanguinis\",\n    13077: \"Halodule\",\n    13078: \"Halodule wrightii\",\n    13080: \"Hauya\",\n    13081: \"Hauya elegans\",\n    13082: \"Hedycarya\",\n    13083: \"Hedycarya arborea\",\n    13084: \"Heteronotia\",\n    13085: \"Heteronotia binoei\",\n    13090: \"Hosta\",\n    13091: \"Hosta lancifolia\",\n    13092: \"Hydractinia\",\n    13093: \"Hydractinia symbiolongicarpus\",\n    13095: \"Hypophthalmichthys molitrix\",\n    13097: \"Illicium\",\n    13098: \"Illicium floridanum\",\n    13099: \"Illicium parviflorum\",\n    13100: \"Juniperus\",\n    13101: \"Juniperus ashei\",\n    13102: \"Juniperus rigida var. conferta\",\n    13103: \"Lampetra\",\n    13105: \"Lepomis\",\n    13106: \"Lepomis macrochirus\",\n    13107: \"Leuckartiara\",\n    13108: \"Leuckartiara octona\",\n    13109: \"Lissoclinum\",\n    13110: \"Lissoclinum patella\",\n    13111: \"Lopezia\",\n    13112: \"Lopezia hirsuta\",\n    13113: \"Lorius\",\n    13114: \"Lorius garrulus\",\n    13115: \"Lucinoma\",\n    13116: \"Lucinoma aequizonata\",\n    13117: \"Lucinoma annulata\",\n    13118: \"Ludwigia\",\n    13119: \"Ludwigia peploides\",\n    13122: \"Lymantria\",\n    13123: \"Lymantria dispar\",\n    13124: \"Lynx\",\n    13125: \"Lynx lynx\",\n    13128: \"Lythrum\",\n    13129: \"Lythrum salicaria\",\n    13130: \"Macrosiphum\",\n    13131: \"Macrosiphum euphorbiae\",\n    13134: \"Magnetospirillum\",\n    13136: \"unidentified marine bacterioplankton\",\n    13138: \"Mastotermes\",\n    13139: \"Mastotermes darwiniensis\",\n    13140: \"Mastotermes electrodominicus\",\n    13141: \"Melaphis\",\n    13142: \"Melaphis rhois\",\n    13145: \"Melopsittacus\",\n    13146: \"Melopsittacus undulatus\",\n    13149: \"Microcebus\",\n    13150: \"Micromys\",\n    13151: \"Micromys minutus\",\n    13152: \"Mindarus\",\n    13153: \"Mindarus kinseyi\",\n    13157: \"Mougeotia\",\n    13158: \"Mougeotia scalaris\",\n    13159: \"Mycoplana\",\n    13160: \"Brevundimonas bullata\",\n    13163: \"Myzus\",\n    13164: \"Myzus persicae\",\n    13165: \"Najas\",\n    13166: \"Najas guadaliensis\",\n    13169: \"Nematanthus\",\n    13170: \"Nematanthus wettsteinii\",\n    13171: \"Neobellieria\",\n    13173: \"Neothyris\",\n    13174: \"Neothyris lenticularis\",\n    13179: \"Nymphicus\",\n    13180: \"Nymphicus hollandicus\",\n    13186: \"Parietaria\",\n    13187: \"Parietaria officinalis\",\n    13190: \"Pectinophora\",\n    13191: \"Pectinophora gossypiella\",\n    13192: \"Pemphigus\",\n    13193: \"Pemphigus betae\",\n    13196: \"Peperomia\",\n    13197: \"Peperomia sp. Qiu 91047\",\n    13201: \"Phaeococcomyces\",\n    13202: \"Exophiala exophialae\",\n    13203: \"Phlebotomus\",\n    13204: \"Phlebotomus perniciosus\",\n    13205: \"Pholiota\",\n    13206: \"Pholiota aurivella\",\n    13207: \"Phragmatopoma\",\n    13208: \"Phragmatopoma californica\",\n    13213: \"Pionus\",\n    13214: \"Pionus menstruus\",\n    13215: \"Piper\",\n    13216: \"Piper nigrum\",\n    13217: \"Piper betle\",\n    13220: \"Pleurochrysis\",\n    13221: \"Chrysotila carterae\",\n    13224: \"Pomatoschistus\",\n    13225: \"Pomatoschistus minutus\",\n    13228: \"Potamogeton\",\n    13230: \"Prosopis juliflora\",\n    13231: \"Pseudococcus\",\n    13232: \"Pseudococcus affinis\",\n    13233: \"Pseudococcus longispinus\",\n    13234: \"Pseudococcus maritimus\",\n    13239: \"Psittacus\",\n    13242: \"Rarobacter\",\n    13243: \"Rarobacter faecitabidus\",\n    13244: \"Regulus\",\n    13245: \"Regulus satrapa\",\n    13248: \"Rhodnius\",\n    13249: \"Rhodnius prolixus\",\n    13253: \"Sabal\",\n    13257: \"Saruma\",\n    13258: \"Saruma henryi\",\n    13259: \"Saururus\",\n    13260: \"Saururus cernuus\",\n    13261: \"Schizaphis\",\n    13262: \"Schizaphis graminum\",\n    13264: \"Brachyspira innocens\",\n    13265: \"Smilodon\",\n    13266: \"Smilodon fatalis\",\n    13267: \"Solemya\",\n    13268: \"Solemya velum\",\n    13273: \"Stellaria\",\n    13274: \"Stellaria media\",\n    13275: \"Suttonella\",\n    13276: \"Suttonella indologenes\",\n    13278: \"Synanceia\",\n    13279: \"Synanceia horrida\",\n    13280: \"Taphozous\",\n    13281: \"Taphozous georgianus\",\n    13282: \"Taxodium\",\n    13283: \"Terebratella\",\n    13284: \"Terebratella sanguinea\",\n    13285: \"Theromyzon\",\n    13286: \"Theromyzon tessulatum\",\n    13287: \"Thlaspi\",\n    13288: \"Thlaspi arvense\",\n    13289: \"Tilletia\",\n    13290: \"Tilletia caries\",\n    13291: \"Tilletia controversa\",\n    13305: \"Tulipa\",\n    13306: \"Tulipa gesneriana\",\n    13322: \"Acanthocybium\",\n    13323: \"Acanthocybium solandri\",\n    13324: \"Acanthoproctus\",\n    13326: \"Acanthus\",\n    13327: \"Acanthus montanus\",\n    13328: \"Achillea\",\n    13329: \"Achillea millefolium\",\n    13330: \"Akebia\",\n    13331: \"Akebia quinata\",\n    13332: \"Amborella\",\n    13333: \"Amborella trichopoda\",\n    13334: \"Anaerobiospirillum\",\n    13335: \"Anaerobiospirillum succiniciproducens\",\n    13336: \"Annona\",\n    13337: \"Annona muricata\",\n    13338: \"Apocynum\",\n    13339: \"Apocynum cannabinum\",\n    13340: \"Aralia\",\n    13341: \"Aralia spinosa\",\n    13342: \"Arbutus\",\n    13343: \"Arbutus canariensis\",\n    13344: \"Ardisia\",\n    13345: \"Ardisia crenata\",\n    13346: \"Armadillidium\",\n    13347: \"Armadillidium vulgare\",\n    13348: \"Arthrobotrys\",\n    13349: \"Arthrobotrys oligospora\",\n    13350: \"Austrobaileya\",\n    13351: \"Austrobaileya scandens\",\n    13352: \"Auxis\",\n    13353: \"Auxis thazard\",\n    13356: \"Zygogynum\",\n    13357: \"Zygogynum sp. Qiu 90024\",\n    13358: \"Blennosperma\",\n    13359: \"Blennosperma nanum\",\n    13360: \"Boopis\",\n    13361: \"Boopis anthemoides\",\n    13362: \"Borago\",\n    13363: \"Borago officinalis\",\n    13364: \"Bowenia\",\n    13365: \"Bowenia serrulata\",\n    13366: \"Brettanomyces\",\n    13368: \"Brettanomyces custersianus\",\n    13370: \"Brettanomyces naardenensis\",\n    13373: \"Burkholderia mallei\",\n    13376: \"Cacosmia\",\n    13377: \"Cacosmia rugosa\",\n    13378: \"Callistephus\",\n    13379: \"Callistephus chinensis\",\n    13380: \"Callitriche\",\n    13381: \"Callitriche heterophylla\",\n    13382: \"Callitris\",\n    13383: \"Callitris rhomboidea\",\n    13384: \"Calluna\",\n    13385: \"Calluna vulgaris\",\n    13386: \"Calocedrus\",\n    13387: \"Calocedrus decurrens\",\n    13390: \"Camponotus\",\n    13391: \"Camponotus festinatus\",\n    13392: \"Cananga\",\n    13393: \"Cananga odorata\",\n    13394: \"Capparis\",\n    13395: \"Capparis masaikai\",\n    13396: \"Carcharodon\",\n    13397: \"Carcharodon carcharias\",\n    13398: \"Carex\",\n    13399: \"Carex hostiana\",\n    13402: \"Carya\",\n    13403: \"Carya glabra\",\n    13404: \"Cassiope\",\n    13405: \"Cassiope mertensiana\",\n    13406: \"Catalpa\",\n    13407: \"Catalpa sp. Olmstead 92-99\",\n    13408: \"Celtis\",\n    13409: \"Celtis yunnanensis\",\n    13410: \"Ceratiola\",\n    13411: \"Ceratiola ericoides\",\n    13412: \"Cercidiphyllum\",\n    13413: \"Cercidiphyllum japonicum\",\n    13414: \"Chamaecyparis\",\n    13415: \"Chamaecyparis obtusa\",\n    13416: \"Chamaedaphne\",\n    13417: \"Chamaedaphne calyculata\",\n    13418: \"Chimonanthus\",\n    13419: \"Chimonanthus praecox\",\n    13420: \"Chromolaena\",\n    13421: \"Chromolaena sp. Dillon 4105\",\n    13422: \"Chrysanthemum\",\n    13423: \"Leucanthemum maximum\",\n    13424: \"Chrysophyllum\",\n    13425: \"Chrysophyllum oliviforme\",\n    13426: \"Cichorium\",\n    13427: \"Cichorium intybus\",\n    13428: \"Cinnamomum\",\n    13429: \"Cinnamomum camphora\",\n    13430: \"Clavija\",\n    13431: \"Clavija eggersiana\",\n    13432: \"Clerodendrum\",\n    13433: \"Clerodendrum fragrans\",\n    13434: \"Clethra\",\n    13435: \"Clethra alnifolia\",\n    13436: \"Clytia\",\n    13438: \"Cnephia\",\n    13439: \"Cnephia dacotensis\",\n    13440: \"Cocculus\",\n    13441: \"Cocculus trilobus\",\n    13442: \"Coffea\",\n    13443: \"Coffea arabica\",\n    13444: \"Colchicum\",\n    13445: \"Colchicum speciosum\",\n    13446: \"Conium\",\n    13447: \"Conium maculatum\",\n    13448: \"Coreopsis\",\n    13449: \"Coreopsis grandiflora\",\n    13450: \"Corylus\",\n    13451: \"Corylus avellana\",\n    13452: \"Corylus cornuta\",\n    13453: \"Coryphaena\",\n    13454: \"Coryphaena equiselis\",\n    13456: \"Cratogeomys castanops castanops\",\n    13457: \"Cratogeomys castanops tamaulipensis\",\n    13458: \"Cratogeomys fumosus\",\n    13459: \"Cratogeomys goldmani goldmani\",\n    13461: \"Cratogeomys gymnurus\",\n    13462: \"Cratogeomys merriami\",\n    13463: \"Cratogeomys tylorhinus\",\n    13464: \"Crepis\",\n    13465: \"Crepis capillaris\",\n    13466: \"Cupaniopsis\",\n    13467: \"Cupaniopsis anacardioides\",\n    13468: \"Cupressus\",\n    13469: \"Cupressus sempervirens\",\n    13470: \"Cyathea\",\n    13471: \"Cyathea crinita\",\n    13472: \"Styphelia\",\n    13473: \"Acrothamnus colensoi\",\n    13474: \"Cylindrocarpon\",\n    13476: \"Cyprinella\",\n    13477: \"Cyprinella spiloptera\",\n    13478: \"Daboecia\",\n    13479: \"Daboecia cantabrica\",\n    13480: \"Dasyphyllum\",\n    13481: \"Dasyphyllum diacanthoides\",\n    13482: \"Degeneria\",\n    13483: \"Degeneria vitiensis\",\n    13484: \"Dianella\",\n    13485: \"Dianella ensifolia\",\n    13486: \"Diapensia\",\n    13487: \"Diapensia lapponica\",\n    13488: \"Dicentrarchus\",\n    13489: \"Dicentrarchus labrax\",\n    13490: \"Dimorphotheca\",\n    13491: \"Dimorphotheca pluvialis\",\n    13492: \"Diospyros\",\n    13493: \"Diospyros virginiana\",\n    13496: \"Diselma\",\n    13497: \"Diselma archeri\",\n    13498: \"Dolichosaccus\",\n    13499: \"Dracophyllum\",\n    13500: \"Dracophyllum longifolium\",\n    13502: \"Brettanomyces nanus\",\n    13503: \"Elegia\",\n    13504: \"Elegia sp. Chase 209\",\n    13505: \"Elliottia\",\n    13506: \"Elliottia racemosa\",\n    13507: \"Enkianthus\",\n    13508: \"Enkianthus campanulatus\",\n    13509: \"Erica\",\n    13510: \"Erica australis\",\n    13511: \"Erythroxylum\",\n    13512: \"Erythroxylum confusum\",\n    13513: \"Eulemur\",\n    13514: \"Eulemur coronatus\",\n    13515: \"Eulemur fulvus\",\n    13516: \"Eupatorium\",\n    13517: \"Eupatorium atrorubens\",\n    13518: \"Eupolymnia\",\n    13519: \"Eupolymnia nebulosa\",\n    13520: \"Eupomatia\",\n    13521: \"Eupomatia bennettii\",\n    13522: \"Euptelea\",\n    13523: \"Euptelea polyandra\",\n    13524: \"Exacum\",\n    13525: \"Exacum affine\",\n    13526: \"Felicia\",\n    13527: \"Felicia bergeriana\",\n    13528: \"Flagellaria\",\n    13529: \"Flagellaria indica\",\n    13530: \"Floerkea\",\n    13531: \"Floerkea proserpinacoides\",\n    13532: \"Fouquieria\",\n    13533: \"Fouquieria splendens\",\n    13534: \"Galbulimima\",\n    13535: \"Galbulimima belgraveana\",\n    13536: \"Gasterochisma\",\n    13537: \"Gasterochisma melampus\",\n    13538: \"Gaultheria\",\n    13539: \"Gaultheria eriophylla\",\n    13540: \"Gazania\",\n    13541: \"Gazania splendens\",\n    13542: \"Gempylus\",\n    13543: \"Gempylus serpens\",\n    13544: \"Geomys\",\n    13546: \"Gerbera\",\n    13547: \"Gerbera jamesonii\",\n    13548: \"Glomerella\",\n    13550: \"Gryllodes\",\n    13551: \"Gryllodes sigillatus\",\n    13552: \"Gyrocarpus\",\n    13553: \"Gyrocarpus sp. Chase 317\",\n    13554: \"Haemadipsa\",\n    13555: \"Haemadipsa sylvestris\",\n    13556: \"Hapalemur\",\n    13557: \"Hapalemur griseus\",\n    13558: \"Hedyosmum\",\n    13559: \"Hedyosmum arborescens\",\n    13560: \"Hernandia\",\n    13561: \"Hernandia ovigera\",\n    13562: \"Heterobasidion\",\n    13563: \"Heterobasidion annosum\",\n    13564: \"Heterobasidion araucariae\",\n    13565: \"Hetrodes\",\n    13567: \"Hexamita\",\n    13568: \"Hydrastis\",\n    13569: \"Hydrastis canadensis\",\n    13570: \"Hypoestes\",\n    13571: \"Hypoestes forskaolii\",\n    13572: \"Idiospermum\",\n    13573: \"Idiospermum australiense\",\n    13574: \"Istiophorus\",\n    13575: \"Istiophorus platypterus\",\n    13576: \"Jalmenus\",\n    13577: \"Jalmenus evagoras\",\n    13578: \"Juncus\",\n    13579: \"Juncus effusus\",\n    13580: \"Katsuwonus\",\n    13582: \"Knema\",\n    13583: \"Knema latericia\",\n    13585: \"Kalmia buxifolia\",\n    13586: \"Lepidocybium\",\n    13587: \"Lepidocybium flavobrunneum\",\n    13588: \"Lepidagathis\",\n    13589: \"Lepidagathis villosa\",\n    13590: \"Leucopogon\",\n    13591: \"Leucopogon fraseri\",\n    13592: \"Libanasidus\",\n    13593: \"Libanasidus vittatus\",\n    13594: \"Libocedrus\",\n    13595: \"Libocedrus plumosa\",\n    13596: \"Ligustrum\",\n    13597: \"Ligustrum vulgare\",\n    13598: \"Liolophura\",\n    13599: \"Liolophura japonica\",\n    13601: \"Berberis bealei\",\n    13602: \"Makaira\",\n    13603: \"Istiompax indica\",\n    13604: \"Makaira nigricans\",\n    13605: \"Manglietia\",\n    13606: \"Magnolia fordiana\",\n    13607: \"Mantoniella\",\n    13608: \"Mantoniella squamata\",\n    13609: \"Maoricolpus\",\n    13610: \"Maoricolpus roseus\",\n    13611: \"Michelia\",\n    13612: \"Magnolia figo\",\n    13613: \"Microbiota\",\n    13614: \"Microbiota decussata\",\n    13615: \"Monodelphis\",\n    13616: \"Monodelphis domestica\",\n    13617: \"Myrmecia\",\n    13618: \"Myrmecia pilosula\",\n    13621: \"Ostrya\",\n    13622: \"Ostrya virginiana\",\n    13623: \"Oxychloe\",\n    13624: \"Oxychloe andina\",\n    13625: \"Paeonia\",\n    13626: \"Paeonia tenuifolia\",\n    13627: \"Cratogeomys\",\n    13628: \"Pappogeomys bulleri\",\n    13629: \"Pentachondra\",\n    13630: \"Pentachondra pumila\",\n    13632: \"Lucilia sericata\",\n    13633: \"Phalera\",\n    13634: \"Phalera flavescens\",\n    13635: \"Piptocarpha\",\n    13636: \"Piptocarpha axillaris\",\n    13637: \"Platycladus\",\n    13639: \"Polemonium\",\n    13640: \"Polemonium reptans\",\n    13641: \"Polysphondylium\",\n    13642: \"Heterostelium pallidum\",\n    13643: \"Prionium\",\n    13644: \"Prionium serratum\",\n    13645: \"Prosimulium\",\n    13646: \"Prosimulium fuscum\",\n    13647: \"Prosimulium magnum\",\n    13648: \"Puccinellia\",\n    13649: \"Puccinellia distans\",\n    13650: \"Pyrola\",\n    13651: \"Pyrola rotundifolia\",\n    13653: \"Reinwardtia\",\n    13654: \"Reinwardtia indica\",\n    13656: \"Rhizorhapis suberifaciens\",\n    13657: \"Romanomermis\",\n    13658: \"Romanomermis culicivorax\",\n    13659: \"Ruellia\",\n    13660: \"Ruellia brevifolia\",\n    13661: \"Ruvettus\",\n    13662: \"Ruvettus pretiosus\",\n    13663: \"Sabia\",\n    13664: \"Sabia sp. Qiu 91025\",\n    13665: \"Sanicula\",\n    13666: \"Sanicula gregaria\",\n    13667: \"Sansevieria\",\n    13668: \"Sansevieria cylindrica\",\n    13669: \"Sarcandra\",\n    13670: \"Sarcandra grandifolia\",\n    13673: \"Schisandra\",\n    13674: \"Schisandra sphenanthera\",\n    13675: \"Scomber\",\n    13676: \"Scomber japonicus\",\n    13677: \"Scomber scombrus\",\n    13678: \"Scomberomorus\",\n    13679: \"Scomberomorus cavalla\",\n    13684: \"Parastagonospora nodorum\",\n    13685: \"Solenopsis\",\n    13686: \"Solenopsis invicta\",\n    13687: \"Sphingomonas\",\n    13688: \"Novosphingobium capsulatum\",\n    13689: \"Sphingomonas paucimobilis\",\n    13690: \"Sphingobium yanoikuyae\",\n    13691: \"Sphyraena\",\n    13692: \"Sphyraena sphyraena\",\n    13693: \"Stegopterna\",\n    13694: \"Stegopterna mutata\",\n    13695: \"Stokesia\",\n    13696: \"Stokesia laevis\",\n    13697: \"Strymon\",\n    13698: \"Strymon melinus\",\n    13699: \"Styrax\",\n    13700: \"Styrax americanus\",\n    13701: \"Symphoricarpos\",\n    13702: \"Symphoricarpos albus\",\n    13705: \"Syncephalastrum\",\n    13706: \"Syncephalastrum racemosum\",\n    13707: \"Tagetes\",\n    13708: \"Tagetes erecta\",\n    13711: \"Magnolia singapurensis\",\n    13712: \"Tamias\",\n    13714: \"Tetracentron\",\n    13715: \"Tetracentron sinense\",\n    13716: \"Tetraclinis\",\n    13717: \"Tetraclinis articulata\",\n    13718: \"Tetrapturus\",\n    13719: \"Kajikia albida\",\n    13720: \"Tetrapturus angustirostris\",\n    13721: \"Kajikia audax\",\n    13722: \"Tetrapturus belone\",\n    13723: \"Tetrapturus pfluegeri\",\n    13724: \"Thiocystis\",\n    13725: \"Thiocystis violacea\",\n    13726: \"Thujopsis\",\n    13727: \"Thujopsis dolabrata\",\n    13728: \"Thunbergia\",\n    13729: \"Thunbergia usambarica\",\n    13730: \"Tragopogon\",\n    13731: \"Tragopogon porrifolius\",\n    13732: \"Trichiurus\",\n    13733: \"Trichiurus lepturus\",\n    13734: \"Trionyx\",\n    13735: \"Pelodiscus sinensis\",\n    13736: \"Turritella\",\n    13737: \"Turritella acropora\",\n    13738: \"Turritella anactor\",\n    13739: \"Turritella communis\",\n    13740: \"Turritella exoleta\",\n    13741: \"Turritella gonostoma\",\n    13742: \"Turritella leucostoma\",\n    13743: \"Turritella nodulosa\",\n    13744: \"Turritella terebra\",\n    13745: \"Uria\",\n    13746: \"Uria aalge\",\n    13747: \"Utricularia\",\n    13748: \"Utricularia gibba\",\n    13749: \"Vaccinium\",\n    13750: \"Vaccinium macrocarpon\",\n    13751: \"Vermicularia\",\n    13752: \"Vermicularia knorri\",\n    13753: \"Vernonia\",\n    13754: \"Gymnanthemum mespilifolium\",\n    13755: \"Villarsia\",\n    13756: \"Villarsia calthifolia\",\n    13757: \"Viola\",\n    13758: \"Viola sororia\",\n    13759: \"Widdringtonia\",\n    13760: \"Widdringtonia cedarbergensis\",\n    13761: \"Xanthorhiza\",\n    13762: \"Xanthorhiza simplicissima\",\n    13763: \"Xyrichtys\",\n    13764: \"Xyrichtys martinicensis\",\n    13765: \"Xyrichtys novacula\",\n    13766: \"Xyrichtys splendens\",\n    13767: \"Zenobia\",\n    13768: \"Zenobia pulverulenta\",\n    13769: \"Natrialba magadii\",\n    13773: \"Pyrobaculum aerophilum\",\n    13774: \"Metopus contortus archaeal symbiont\",\n    13776: \"unidentified archaeon\",\n    13777: \"Nitella translucens\",\n    13778: \"Chara\",\n    13779: \"Chara connivens\",\n    13780: \"Chara foetida\",\n    13781: \"Klebsormidium sp.\",\n    13782: \"Sirogonium\",\n    13783: \"Sirogonium melanosporum\",\n    13786: \"Trebouxia\",\n    13787: \"Trebouxia asymmetrica\",\n    13788: \"Trebouxia impressa\",\n    13789: \"Asterochloris magna\",\n    13790: \"Dunaliella bioculata\",\n    13792: \"Mamiellales\",\n    13794: \"Andreaeales\",\n    13795: \"Andreaeaceae\",\n    13796: \"Andreaea\",\n    13797: \"Andreaea rupestris\",\n    13798: \"Hypnales\",\n    13799: \"Sematophyllaceae\",\n    13800: \"Brotherella\",\n    13801: \"Brotherella recurvans\",\n    13802: \"Sphagnales\",\n    13803: \"Sphagnaceae\",\n    13804: \"Sphagnum\",\n    13805: \"Sphagnum palustre\",\n    13806: \"Lepidoziaceae\",\n    13807: \"Bazzania\",\n    13808: \"Bazzania trilobata\",\n    13809: \"Anthocerotophyta\",\n    13810: \"Anthocerotales\",\n    13811: \"Anthocerotaceae\",\n    13812: \"Megaceros\",\n    13813: \"Nothoceros aenigmaticus\",\n    13814: \"Marsileaceae\",\n    13815: \"Marsilea\",\n    13816: \"Marsilea quadrifolia\",\n    13817: \"Adiantum\",\n    13818: \"Adiantum capillus-veneris\",\n    13819: \"Pteridaceae\",\n    13820: \"Pteris\",\n    13821: \"Pteris vittata\",\n    13822: \"Schizaeaceae\",\n    13823: \"Lygodium\",\n    13824: \"Lygodium japonicum\",\n    13825: \"Angiopteris evecta\",\n    13827: \"Ophioglossales\",\n    13828: \"Ophioglossaceae\",\n    13829: \"Botrychium\",\n    13830: \"Sceptridium biternatum\",\n    13832: \"Botrypus strictus\",\n    13833: \"Ophioglossum\",\n    13834: \"Ophioglossum engelmannii\",\n    13836: \"Isoetales\",\n    13837: \"Isoetaceae\",\n    13838: \"Isoetes\",\n    13839: \"Isoetes melanopoda\",\n    13840: \"Spinulum annotinum\",\n    13841: \"Diphasiastrum digitatum\",\n    13893: \"Cocos\",\n    13894: \"Cocos nucifera\",\n    14009: \"Rhapis\",\n    14026: \"Trachycarpus\",\n    14027: \"Trachycarpus fortunei\",\n    14081: \"Rapateaceae\",\n    14097: \"Stegolepis\",\n    14101: \"Juncaceae\",\n    14107: \"Restionaceae\",\n    14146: \"Flagellariaceae\",\n    14366: \"Cymbidium\",\n    14457: \"Epipactis\",\n    14605: \"Listera\",\n    14999: \"Alisma\",\n    395: \"Azorhizobium caulinodans\",\n    229: \"Shewanella colwelliana\",\n    230: \"Shewanella putrefaciens\",\n    30: \"Myxococcales\",\n    46: \"Archangiaceae\",\n    37: \"Cystobacter\",\n    129: \"Ancylobacter\",\n    121: \"Pirellula staleyi\",\n    177: \"Leptonema illini\",\n    219: \"Helicobacter pylori\",\n    273: \"Thermus thermophilus\",\n    330: \"Pseudomonas oleovorans\",\n    369: \"Agrobacterium tumefaciens\",\n    360: \"Agrobacterium rhizogenes\",\n    383: \"Sinorhizobium meliloti\",\n    397: \"Rhizobium leguminosarum\",\n    2610: \"Sinorhizobium fredii NGR234\",\n    401: \"Rhizobium sp. IRc78\",\n    412: \"Methylobacterium organophilum\",\n    443: \"Gluconobacter oxydans\",\n    457: \"Legionella maceachernii\",\n    514: \"Bordetella bronchiseptica\",\n    557: \"Pantoea agglomerans\",\n    560: \"Pantoea ananatis\",\n    643: \"Aeromonas caviae\",\n    710: \"Photobacterium\",\n    711: \"Photobacterium sp.\",\n    705: \"Vibrio\",\n    681: \"Vibrio harveyi\",\n    737: \"Aggregatibacter aphrophilus\",\n    802: \"Bartonella\",\n    804: \"Bartonella elizabethae\",\n    2081: \"Syntrophomonas\",\n    900: \"Desulfovibrio\",\n    874: \"Desulfomicrobium baculatum\",\n    778: \"Ehrlichia\",\n    946: \"Anaplasma phagocytophilum\",\n    994: \"Flavobacterium johnsoniae\",\n    1055: \"Ectothiorhodospira shaposhnikovii\",\n    12933: \"Thiocapsa\",\n    1077: \"Rhodopseudomonas palustris\",\n    1217: \"Prochloraceae\",\n    1278: \"Kocuria rosea\",\n    1291: \"Staphylococcus simulans bv. staphylolyticus\",\n    1289: \"Streptococcus mutans\",\n    1315: \"Streptococcus equinus\",\n    1469: \"Bacillus simplex\",\n    1594: \"Lactobacillus delbrueckii subsp. bulgaricus\",\n    1644: \"Listeria grayi\",\n    1825: \"Cellulomonas\",\n    1826: \"Cellulosimicrobium cellulans\",\n    1746: \"Propionibacterium freudenreichii subsp. shermanii\",\n    2324: \"Thermoanaerobacter\",\n    1845: \"Saccharopolyspora\",\n    2073: \"Pseudonocardia\",\n    1870: \"Actinoplanes\",\n    1875: \"Micromonospora echinospora\",\n    1973: \"Streptomyces\",\n    1899: \"Streptomyces anulatus\",\n    1344: \"Streptomyces coelicolor\",\n    1939: \"Streptomyces microflavus\",\n    1975: \"Streptomyces sp.\",\n    1986: \"Streptomyces purpureus\",\n    2069: \"Streptomyces morookaense\",\n    1840: \"Pimelobacter simplex\",\n    2091: \"Mycoplasmatales\",\n    2521: \"Mycoplasma mycoides\",\n    2140: \"Spiroplasma monobiae\",\n    2154: \"Candidatus Phytoplasma sp.\",\n    13770: \"Methanobacterium bryantii\",\n    2185: \"Methanobacterium ivanovii\",\n    2227: \"Methanohalophilus\",\n    2170: \"Methanothermus fervidus\",\n    2169: \"Methanothermococcus thermolithotrophicus\",\n    2212: \"Methanosarcina mazei\",\n    2241: \"Halobacterium salinarum\",\n    2274: \"Desulfurococcus mucosus\",\n    2732: \"Bacillus sp. PS3\",\n    1619: \"Carnobacterium maltaromaticum\",\n    2778: \"Gracilariopsis lemaneiformis\",\n    2795: \"Palmaria palmata\",\n    2827: \"Pavlova lutheri\",\n    2884: \"Pylaiella\",\n    2883: \"Pylaiella littoralis\",\n    2906: \"Ochrosphaera sp. 181\",\n    2941: \"Heterocapsa niei\",\n    2895: \"Cryptophyta\",\n    3069: \"Chlamydomonadales\",\n    3045: \"Dunaliella salina\",\n    3053: \"Chlamydomonas moewusii\",\n    3058: \"Chlamydomonas reinhardtii\",\n    3115: \"Ulva\",\n    3194: \"Bryophyta\",\n    3235: \"Psilotopsida\",\n    3241: \"Psilotum nudum\",\n    3361: \"Keteleeria davidiana\",\n    3314: \"Cupressaceae\",\n    4408: \"Magnoliales\",\n    13709: \"Magnolia\",\n    3416: \"Liriodendron chinense\",\n    3461: \"Papaveraceae\",\n    3491: \"Artocarpus integer\",\n    3519: \"Fagales\",\n    4352: \"Caryophyllales\",\n    3556: \"Beta vulgaris subsp. vulgaris\",\n    3549: \"Amaranthaceae\",\n    3611: \"Rhamnus cathartica\",\n    3639: \"Malvaceae\",\n    3643: \"Lecythidaceae\",\n    4385: \"Malpighiales\",\n    3692: \"Populus nigra\",\n    3706: \"Brassica rapa\",\n    4266: \"Rosales\",\n    3748: \"Fragaria x ananassa\",\n    3757: \"Prunus dulcis\",\n    3789: \"Cunoniaceae\",\n    3903: \"Ulex europaeus\",\n    3919: \"Vigna angularis\",\n    3952: \"Oenothera berteroana\",\n    4064: \"Apocynaceae\",\n    4061: \"Rauvolfia\",\n    4063: \"Rauvolfia serpentina\",\n    4105: \"Petunia x hybrida\",\n    4080: \"Solanum\",\n    4117: \"Solanum nigrum\",\n    4175: \"Scrophulariaceae\",\n    3768: \"Lentibulariaceae\",\n    4380: \"Asterales\",\n    4213: \"Ambrosia artemisiifolia\",\n    4316: \"Celastraceae\",\n    4308: \"Euonymus maackii\",\n    4342: \"Ericaceae\",\n    4438: \"Plumbaginaceae\",\n    4468: \"Araceae\",\n    4461: \"Colocasia esculenta\",\n    4484: \"Aegilops markgrafii\",\n    4531: \"Oryza officinalis\",\n    4542: \"Cenchrus americanus\",\n    4574: \"Triticum aestivum x Triticum timopheevi\",\n    4489: \"Aegilops speltoides\",\n    4578: \"Zea mays\",\n    4600: \"Thinopyrum\",\n    4602: \"Thinopyrum elongatum\",\n    4495: \"Amblyopyrum muticum\",\n    4728: \"Typhaceae\",\n    4804: \"Chytridiomycota\",\n    4961: \"Cyberlindnera jadinii\",\n    4945: \"Debaryomyces\",\n    5437: \"Sporobolomyces johnsonii\",\n    13369: \"Brettanomyces bruxellensis\",\n    5080: \"Penicillium chrysogenum\",\n    5049: \"Epichloe typhina\",\n    5521: \"Fusarium sambucinum\",\n    5561: \"Hypomyces rosellus\",\n    5415: \"Cryptococcus\",\n    5316: \"Ganoderma lucidum\",\n    5313: \"Polyporaceae\",\n    5425: \"Agaricales\",\n    5344: \"Agaricaceae\",\n    5348: \"Coprinopsis cinerea\",\n    5126: \"Fusarium\",\n    5285: \"Rhodotorula\",\n    5534: \"Rhodotorula mucilaginosa\",\n    5662: \"Leishmania infantum\",\n    5766: \"Tetramitus\",\n    5920: \"Tetrahymena americanis\",\n    5952: \"Stylonychia mytilus\",\n    6031: \"Microsporidia\",\n    6048: \"Demospongiae\",\n    6064: \"Halichondriidae\",\n    6081: \"Hydra\",\n    6085: \"Hydra vulgaris\",\n    6121: \"Heteractis sp.\",\n    6294: \"Spirurina\",\n    6297: \"Onchocercidae\",\n    6331: \"Trichinellida\",\n    6439: \"Phascolopsis gouldii\",\n    6460: \"Haliotis\",\n    13619: \"Nassarius\",\n    6509: \"Aplysiidae\",\n    6634: \"Todarodes pacificus\",\n    6748: \"Paguroidea\",\n    6963: \"Anisoptera\",\n    13009: \"Stauroderus scalaris\",\n    7075: \"Zophobas atratus\",\n    7103: \"Helicoverpa zea\",\n    7326: \"Drosophila\",\n    13631: \"Lucilia\",\n    13172: \"Sarcophaga bullata\",\n    7383: \"Sarcophaga peregrina\",\n    7418: \"Ichneumonidae\",\n    7510: \"Siphonaptera\",\n    7517: \"Neuroptera\",\n    7562: \"Pentastomida\",\n    7572: \"Lingula anatina\",\n    7605: \"Asterias rubens\",\n    7628: \"Heliocidaris\",\n    8091: \"Perciformes\",\n    8122: \"Haplochromis burtoni\",\n    8123: \"Astatotilapia calliptera\",\n    8170: \"Pagrus\",\n    8263: \"Pseudopleuronectes americanus\",\n    8470: \"Chelonia mydas\",\n    8494: \"Crocodylidae\",\n    13294: \"Tiliqua rugosa\",\n    8588: \"Ptyas dhumnades\",\n    8645: \"Naja mossambica\",\n    8648: \"Naja atra\",\n    8662: \"Notechis scutatus\",\n    8780: \"Hydrophis\",\n    8775: \"Calloselasma rhodostoma\",\n    8761: \"Sistrurus tergeminus\",\n    8760: \"Sistrurus miliarius barbouri\",\n    8791: \"Dromaius novaehollandiae\",\n    8890: \"Anser\",\n    8891: \"Anser caerulescens\",\n    9241: \"Apodiformes\",\n    9245: \"Charadriiformes\",\n    9099: \"Phasianidae\",\n    9024: \"Callipepla\",\n    9028: \"Oreortyx pictus\",\n    9073: \"Arborophila\",\n    9074: \"Arborophila torqueola\",\n    9110: \"Grus\",\n    9113: \"Grus carunculatus\",\n    9141: \"Asthenes dorbignyi\",\n    9492: \"Callithrix\",\n    9484: \"Callithrix jacchus\",\n    9563: \"Papio anubis\",\n    9560: \"Papio hamadryas\",\n    9609: \"Vulpes\",\n    9628: \"Vulpes vulpes\",\n    9698: \"Herpestidae\",\n    9797: \"Equus asinus\",\n    9795: \"Equus hemionus\",\n    9936: \"Ovis aries\",\n    9985: \"Oryctolagus cuniculus\",\n    10109: \"Mus spicilegus\",\n    10202: \"Ctenophora\",\n    12871: \"Variola virus\",\n    12738: \"Bovine alphaherpesvirus 1\",\n    12829: \"Macacine alphaherpesvirus 1\",\n    10396: \"Saimiriine alphaherpesvirus 1\",\n    10354: \"Bovine gammaherpesvirus 4\",\n    12743: \"Gallid alphaherpesvirus 1\",\n    12614: \"Ictalurid herpesvirus 1\",\n    10502: \"Phycodnaviridae\",\n    12592: \"Bovine adenovirus 3\",\n    12607: \"Canine adenovirus 1\",\n    12757: \"Murine adenovirus 1\",\n    10554: \"Fowl aviadenovirus 1\",\n    10657: \"Tectiviridae\",\n    12398: \"Bacillus virus SPO1\",\n    12422: \"Phage 434\",\n    12339: \"Staphylococcus phage 42D.m\",\n    12414: \"Streptomyces virus phiC31\",\n    12028: \"Bacillus phage SPR\",\n    12373: \"Staphylococcus phage L54a\",\n    12346: \"Streptococcus pneumoniae phage HB-3\",\n    12334: \"Streptomyces phage R4\",\n    12380: \"Bacillus phage rho11s\",\n    10716: \"Enterobacteria phage PA-2\",\n    12419: \"Escherichia virus HK022\",\n    12377: \"Lactococcus phage phi-vML3\",\n    10741: \"Enterobacteria phage LP7\",\n    10675: \"Enterobacteria phage K11\",\n    10810: \"Bombyx mori densovirus\",\n    10858: \"Escherichia virus phiK\",\n    10706: \"Escherichia phage alpha3\",\n    10853: \"Spiroplasma phage 1-R8A2B\",\n    10890: \"Mammalian orthoreovirus 1 Lang\",\n    10889: \"Mammalian orthoreovirus 2 D5/Jones\",\n    10888: \"Mammalian orthoreovirus 3 Dearing\",\n    10920: \"Porcine rotavirus strain Gottfried\",\n    10924: \"Simian rotavirus A/SA11\",\n    12706: \"Human rotavirus C\",\n    10972: \"Human rotavirus G4 strain St. Thomas 3\",\n    12794: \"Porcine rotavirus C\",\n    12740: \"Infectious bursal disease virus\",\n    12744: \"Infectious pancreatic necrosis virus\",\n    12525: \"Saccharomyces cerevisiae virus L-A\",\n    12625: \"Classical swine fever virus\",\n    12859: \"Transmissible gastroenteritis virus\",\n    11197: \"Sendai virus (Z)\",\n    11202: \"Human respirovirus 3\",\n    11204: \"Human parainfluenza virus 4a\",\n    11205: \"Human parainfluenza virus 4b\",\n    11230: \"Measles morbillivirus\",\n    12604: \"Bovine orthopneumovirus\",\n    11267: \"Filoviridae\",\n    12872: \"Vesicular stomatitis virus\",\n    12874: \"Viral hemorrhagic septicemia virus\",\n    12826: \"Sigma virus\",\n    12565: \"Thogoto thogotovirus\",\n    11600: \"HoJo virus\",\n    12748: \"Lymphocytic choriomeningitis mammarenavirus\",\n    11872: \"Reticuloendotheliosis virus\",\n    11647: \"Bovine immunodeficiency virus\",\n    12610: \"Caprine arthritis encephalitis virus\",\n    11722: \"Human immunodeficiency virus type 1 (ZAIRE 6 ISOLATE)\",\n    11740: \"Simian immunodeficiency virus\",\n    12704: \"Human endogenous retrovirus ERV-9\",\n    12746: \"Jaagsiekte sheep retrovirus\",\n    11969: \"Golden hamster intracisternal A-particle H18\",\n    11933: \"Mouse intracisternal A-particle MIA14\",\n    11934: \"Mouse intracisternal A-particle MIAIL3\",\n    11920: \"Feline leukemia virus\",\n    11773: \"Gardner-Arnstein feline sarcoma virus\",\n    11825: \"Feline sarcoma virus (STRAIN HARDY-ZUCKERMAN 4)\",\n    12763: \"Murine leukemia virus\",\n    11831: \"AKR (endogenous) murine leukemia virus\",\n    11972: \"Cas NS-1 murine leukemia virus\",\n    11802: \"Moloney murine sarcoma virus\",\n    12767: \"Myeloproliferative sarcoma virus\",\n    11940: \"NS.C58 murine sarcoma virus\",\n    11939: \"Mason-Pfizer monkey virus\",\n    12562: \"Squirrel monkey retrovirus-H\",\n    12581: \"Avian myeloblastosis virus\",\n    11952: \"Avian myelocytomatosis virus\",\n    11917: \"Avian carcinoma Mill Hill virus 2\",\n    11918: \"Avian myelocytomatosis virus OK10\",\n    11959: \"Avian musculoaponeurotic fibrosarcoma virus AS42\",\n    11890: \"Avian sarcoma virus 17\",\n    11892: \"Avian sarcoma virus CT10\",\n    11891: \"Avian sarcoma virus PR2257\",\n    11893: \"Avian sarcoma virus PRCII\",\n    11895: \"Avian sarcoma virus S1\",\n    11896: \"Avian sarcoma virus S2\",\n    11898: \"Y73 sarcoma virus\",\n    11755: \"Mouse Intracisternal A-particle\",\n    11852: \"Simian retrovirus 1\",\n    11953: \"Rous-associated virus type 0\",\n    11954: \"Rous-associated virus type 1\",\n    12766: \"Avian myeloblastosis-associated virus\",\n    12749: \"Lymphoproliferative disease virus\",\n    11817: \"Woolly monkey sarcoma virus\",\n    12806: \"Rabbit hemorrhagic disease virus\",\n    11991: \"Enterobacteria phage BO1\",\n    11992: \"Enterobacteria phage isolate BZ13\",\n    11994: \"Enterobacteria phage f2\",\n    11995: \"Enterobacteria phage fr\",\n    11997: \"Enterobacteria phage GA\",\n    11998: \"Enterobacteria phage JP34\",\n    11999: \"Enterobacteria phage JP501\",\n    12000: \"Enterobacteria phage KU1\",\n    12001: \"Enterobacteria phage MS2\",\n    12011: \"Pseudomonas phage PP7\",\n    12012: \"Pseudomonas phage PRR1\",\n    12002: \"Enterobacteria phage R17\",\n    12010: \"Enterobacteria phage SP\",\n    12004: \"Enterobacteria phage TH1\",\n    12006: \"Enterobacteria phage TW28\",\n    12007: \"Enterobacteria phage VK\",\n    11996: \"Enterobacteria phage fr1\",\n    12128: \"Enterovirus\",\n    12630: \"Coxsackievirus B3\",\n    12564: \"Theiler's encephalomyelitis virus\",\n    12469: \"Sobemovirus\",\n    12547: \"Belladonna mottle virus\",\n    12156: \"Eggplant mosaic virus\",\n    12840: \"Strawberry mild yellow edge virus\",\n    12863: \"Turnip mosaic virus\",\n    12265: \"Bean pod mottle virus\",\n    12792: \"Poa semilatent virus\",\n    12448: \"Clostridium phage c-st\",\n    12003: \"Enterobacteria phage ST\",\n    12411: \"Staphylococcus virus 11\",\n    12372: \"Streptococcus pyogenes phage H4489A\",\n    12364: \"Lactococcus phage (ISOLATE 7-9)\",\n    12369: \"Lactococcus phage F4-1\",\n    12418: \"Lactococcus phage phiLC3\",\n    10698: \"Salmonella virus PsP3\",\n    12358: \"Lactobacillus phage phiadh\",\n    12572: \"AKT8 retrovirus\",\n    12646: \"Non-A, non-B hepatitis virus\",\n    12682: \"Hepatitis delta virus\",\n    12616: \"Cryphonectria hypovirus 1-EP713\",\n    10628: \"African green monkey polyomavirus\",\n    11609: \"Seoul virus 80-39\",\n    10975: \"Adult diarrheal rotavirus\",\n    11209: \"Human respirovirus 1\",\n    11141: \"Murine hepatitis virus strain 4\",\n    12869: \"Variola major virus\",\n    12254: \"Satellite tobacco mosaic virus\",\n    2282: \"Acidianus\",\n    10204: \"Cestum veneris\",\n    5496: \"Chalara\",\n    6155: \"Leuckartiara\",\n    6156: \"Leuckartiara octona\",\n    13671: \"Saruma\",\n    13672: \"Saruma henryi\",\n    13501: \"Brettanomyces\",\n    13655: \"Sphingomonas\",\n    13831: \"Botrychium\",\n    3243: \"Isoetales\",\n    4708: \"Alismatales\",\n    13600: \"Berberis\",\n    4021: \"Sapindaceae\",\n    4271: \"Elaeocarpaceae\",\n    4946: \"Schwanniomyces occidentalis\",\n    7015: \"Oedipodinae\",\n    13437: \"Clytia gregaria\",\n    1846: \"Saccharopolyspora rectivirgula\",\n    1864: \"Micromonosporaceae\",\n    825: \"Prevotella intermedia\",\n    706: \"Vibrio aestuarianus\",\n    707: \"Vibrio ordalii\",\n    13137: \"unidentified marine eubacterium\",\n    12485: \"Amsacta moorei entomopoxvirus\",\n    12865: \"Human type D retrovirus\",\n    12796: \"Porcine reproductive and respiratory syndrome virus\",\n    10973: \"Rotavirus A\",\n    10974: \"Rotavirus B\",\n    12741: \"IDIR agent\",\n    1756: \"Thermoanaerobacterium saccharolyticum\",\n    591: \"Salmonella enterica\",\n    12379: \"Clostridium botulinum D phage\",\n    1734: \"[Clostridium] scindens\",\n    1617: \"Lactobacillus delbrueckii subsp. lactis\",\n    348: \"Xanthomonas campestris pv. cyanopsidis\",\n    627: \"Photorhabdus luminescens\",\n    653: \"Aeromonas enteropelogenes\",\n    708: \"Vibrio tubiashii\",\n    13263: \"Brachyspira\",\n    3286: \"Dryopteridaceae\",\n    6897: \"Aphonopelma sp.\",\n    7773: \"Ichthyomyzon unicuspis\",\n    8003: \"Gymnotidae\",\n    6568: \"Argopecten irradians\",\n    12880: \"Satellite maize white line mosaic virus\",\n    10695: \"Escherichia phage RB3\",\n    10945: \"Human rotavirus 1 strain RV4\",\n    12613: \"Cell fusing agent virus\",\n    12551: \"Avian retrovirus RPL30\",\n    12831: \"Simian immunodeficiency virus - mac1A11\",\n    11025: \"Ockelbo virus\",\n    12255: \"Beet necrotic yellow vein virus\",\n    12341: \"Lactococcus phage BK5-T\",\n    12376: \"Mycobacterium virus L5\",\n    5459: \"Colletotrichum graminicola\",\n    692: \"Comamonas terrigena\",\n    67: \"Xanthomonadaceae\",\n    1141: \"Synechococcus elongatus\",\n    805: \"Bartonella vinsonii\",\n    3126: \"Bryopsidales\",\n    5102: \"Onygenales\",\n    10024: \"Sciuromorpha\",\n    10348: \"Suid herpesvirus 1 strain Kaplan\",\n    11147: \"Porcine respiratory coronavirus (strain 86/137004 / British isolate)\",\n    12629: \"Coxsackievirus A2\",\n    12385: \"Lactobacillus phage mv1\",\n    2032: \"Microbacterium\",\n    1820: \"Amycolatopsis mediterranei\",\n    1250: \"Leuconostoc citreum\",\n    922: \"Paracoccus versutus\",\n    90: \"Sphaerotilus\",\n    91: \"Sphaerotilus natans\",\n    3698: \"Populus sieboldii x Populus grandidentata\",\n    4936: \"Kazachstania exigua\",\n    5122: \"Blumeria graminis\",\n    7817: \"Rhizoprionodon acutus\",\n    8521: \"Scinciformata\",\n    12688: \"Ateline alphaherpesvirus 1\",\n    12593: \"Bovine alphaherpesvirus 5\",\n    12835: \"Cercopithecine alphaherpesvirus 9\",\n    10429: \"Woodchuck hepatitis virus\",\n    12784: \"Pelargonium leaf curl virus\",\n    11573: \"Bunyamwera virus\",\n    11581: \"Simbu orthobunyavirus\",\n    12378: \"Streptococcus phage T12\",\n    3184: \"Cladophoraceae\",\n    1982: \"Streptomyces mobaraensis\",\n    8650: \"Naja naja\",\n    2921: \"Heterocapsa pygmaea\",\n    2793: \"Porphyridium purpureum\",\n    3060: \"Chlamydomonas applanata\",\n    1230: \"Nitrosospira\",\n    3138: \"Acetabularia acetabulum\",\n    3137: \"Acetabularia peniculus\",\n    6461: \"Haliotis diversicolor\",\n    8195: \"Pachycara brachycephalum\",\n    12410: \"Enterobacteria phage phi50\",\n    10505: \"Paramecium bursaria Chlorella virus CV-XZ6E\",\n    10624: \"Polyomavirus sp.\",\n    10495: \"Lymphocystis disease virus 1\",\n    10977: \"Rotavirus C\",\n    10966: \"Bovine rotavirus strain NCDV/G6\",\n    10940: \"Equine rotavirus L338/G13\",\n    10938: \"Equine rotavirus (serotype 14 / strain FI-14)\",\n    12891: \"Coconut cadang-cadang viroid\",\n    10027: \"Cricetinae gen. sp.\",\n    5497: \"Chalara sp.\",\n    2435: \"plasmids\",\n    12842: \"Subterranean clover stunt virus\",\n    1803: \"Mycobacterium genavense\",\n    1815: \"Amycolatopsis azurea\",\n    5484: \"Clavispora lusitaniae\",\n    6985: \"Gromphadorhina\",\n    6986: \"Gromphadorhina portentosa\",\n    6987: \"Rhyparobia\",\n    6988: \"Rhyparobia maderae\",\n    6991: \"Schultesia\",\n    6992: \"Schultesia lampyridiformis\",\n    9941: \"Ovibos moschatus\",\n    7016: \"Dissosteira\",\n    7017: \"Dissosteira carolina\",\n    2076: \"Pseudonocardia petroleophila\",\n    8105: \"Batrachocottus\",\n    8106: \"Batrachocottus baicalensis\",\n    9396: \"Tupaia belangeri\",\n    2027: \"Laceyella sacchari\",\n    3574: \"Silene latifolia\",\n    13367: \"Brettanomyces anomalus\",\n    4482: \"Aegilops tauschii\",\n    1819: \"Rhodococcus opacus\",\n    1700: \"Glutamicibacter nicotianae\",\n    13460: \"Cratogeomys goldmani rubellus\",\n    5558: \"Parengyodontium album\",\n    12361: \"unidentified phage\",\n    806: \"Bartonella henselae\",\n    2519: \"Cloning vector pACYC184\",\n    4727: \"Poales\",\n    11853: \"Simian retrovirus 2\",\n    13835: \"Selaginella apoda\",\n    2228: \"Methanohalophilus portucalensis\",\n    419: \"Methylomicrobium agile\",\n    420: \"Methylomicrobium album\",\n    12009: \"Escherichia virus Qbeta\",\n    11993: \"Escherichia virus FI\",\n    12365: \"Lactococcus phage 936\",\n    10896: \"African horse sickness virus\",\n    12591: \"Bluetongue virus\",\n    10908: \"Epizootic hemorrhagic disease virus\",\n    291: \"Oligotropha carboxidovorans\",\n    345: \"Stenotrophomonas maltophilia\",\n    4723: \"Pandanales\",\n    4709: \"Arecales\",\n    8212: \"Trematomus bernacchii\",\n    1706: \"Exiguobacterium acetylicum\",\n    910: \"Bradyrhizobiaceae\",\n    6422: \"Siboglinidae\",\n    3439: \"Ranunculales\",\n    4279: \"Cornales\",\n    4010: \"Sapindales\",\n    3628: \"Malvales\",\n    4017: \"Geraniales\",\n    3927: \"Myrtales\",\n    4338: \"Ericales\",\n    4393: \"Saxifragales\",\n    3957: \"Santalales\",\n    1342: \"Enterococcus saccharolyticus\",\n    3576: \"Silene vulgaris\",\n    4394: \"Hamamelidaceae\",\n    7708: \"Sclerodactylidae\",\n    6872: \"Mesobuthus tamulus sindicus\",\n    4977: \"Udeniomyces megalosporus\",\n    4982: \"Udeniomyces puniceus\",\n    4980: \"Udeniomyces pyricola\",\n    9270: \"Micoureus regina\",\n    1834: \"Rhodococcus hoagii\",\n    2328: \"Caldicellulosiruptor\",\n    2329: \"Caldicellulosiruptor saccharolyticus\",\n    1330: \"Enterococcus cecorum\",\n    1463: \"Bacillus thuringiensis serovar kyushuensis\",\n    1389: \"Paenibacillus alvei\",\n    1453: \"Paenibacillus durus\",\n    1403: \"Paenibacillus macerans\",\n    1460: \"Paenibacillus validus\",\n    5669: \"Leishmania chagasi\",\n    748: \"Pasteurella multocida subsp. multocida\",\n    3783: \"Crassula marnierana\",\n    4440: \"Plumbago auriculata\",\n    12511: \"Human endogenous retrovirus K\",\n    13584: \"Kalmia\",\n    10446: \"Autographa californica nucleopolyhedrovirus\",\n    10504: \"Paramecium bursaria Chlorella virus NC1A\",\n    12619: \"Paramecium bursaria Chlorella virus NY2A\",\n    289: \"Hydrogenophaga pseudoflava\",\n    10531: \"Tree shrew adenovirus 1\",\n    2003: \"Kutzneria viridogrisea\",\n    8191: \"Mugil cephalus\",\n    8198: \"Zoarces\",\n    5137: \"Pyricularia\",\n    4474: \"Landoltia punctata\",\n    334: \"Pseudomonas fluorescens bv. B\",\n    1980: \"Streptomyces griseocarneus\",\n    667: \"Salinivibrio costicola\",\n    5546: \"Trichoderma reesei\",\n    1256: \"Tetragenococcus halophilus\",\n    877: \"Desulfomicrobium norvegicum\",\n    1842: \"Aeromicrobium fastidiosum\",\n    530: \"Polaribacter\",\n    11262: \"Porcine rubulavirus\",\n    2058: \"Terrabacter\",\n    1979: \"Streptomyces cinnamoneus\",\n    4140: \"Scutellaria bolanderi\",\n    3405: \"Magnolia kobus\",\n    13703: \"Symplocos\",\n    13704: \"Symplocos paniculata\",\n    665: \"Vibrio anguillarum\",\n    6403: \"Hirudinea\",\n    4106: \"Petunia axillaris subsp. parodii\",\n    12980: \"Butea monosperma\",\n    13475: \"Neonectria galligena\",\n    5724: \"Tritrichomonas suis\",\n    3365: \"Afrocarpus falcatus\",\n    5517: \"Fusarium decemcellulare\",\n    5519: \"Fusarium striatum\",\n    13240: \"Psittacus erithacus\",\n    5844: \"Plasmodium falciparum Palo Alto/Uganda\",\n    6482: \"Busycotypus canaliculatus\",\n    7846: \"Isurus oxyrinchus\",\n    13638: \"Platycladus orientalis\",\n    2009: \"Microbispora rosea subsp. rosea\",\n    4488: \"Aegilops sharonensis\",\n    603: \"Salmonella enterica subsp. arizonae\",\n    5366: \"Panus conchatus\",\n    2059: \"Terrabacter tumescens\",\n    5522: \"Fusarium equiseti\",\n    8601: \"Atractaspis bibronii\",\n    8120: \"Cryptoheros spilurus\",\n    8116: \"Amphilophus citrinellus\",\n    8118: \"Amphilophus labiatus\",\n    9584: \"Nomascus gabriellae\",\n    9585: \"Nomascus leucogenys\",\n    9189: \"Emberizinae\",\n    5123: \"Blumeria graminis f. sp. hordei\",\n    8115: \"Archocentrus centrarchus\",\n    4845: \"Rhizopus oryzae\",\n    13713: \"Tamias sibiricus\",\n    1959: \"Actinoalloteichus cyanogriseus\",\n    559: \"Pantoea stewartii subsp. stewartii\",\n    1978: \"Streptomyces roseoverticillatus\",\n    9951: \"Madoqua kirkii\",\n    567: \"Citrobacter intermedius\",\n    10722: \"Bacillus virus SPbeta\",\n    4789: \"Phytophthora sojae\",\n    9025: \"Callipepla californica\",\n    9026: \"Callipepla gambelii\",\n    13313: \"Calloria\",\n    13314: \"Calloria inconspicua\",\n    1974: \"Streptomyces griseoverticillatus\",\n    1983: \"Streptomyces olivoreticuli\",\n    1953: \"Streptomyces violaceusniger\",\n    2703: \"Coprothermobacter\",\n    7169: \"Anopheles farauti\",\n    11710: \"HIV-2.D205\",\n    9934: \"Eudorcas thomsonii\",\n    12950: \"Artioposthia\",\n    10731: \"Enterobacteria phage H-19B\",\n    3205: \"Geocalycaceae\",\n    1024: \"Flexithrix dorotheae\",\n    3399: \"eudicotyledons\",\n    9907: \"Bos mutus\",\n    5396: \"Tapinella atrotomentosa\",\n    4745: \"Asparagales\",\n    5048: \"Epichloe festucae var. lolii\",\n    12: \"Photobacterium profundum\",\n    77: \"Brevundimonas bacteroides\",\n    79: \"Brevundimonas subvibrioides\",\n    3291: \"Salviniales\",\n    8026: \"Oncorhynchus tshawytscha\",\n    8836: \"Lophonetta specularioides\",\n    746: \"Mannheimia haemolytica\",\n    925: \"Acidiphilium acidophilum\",\n    4518: \"Hordeum vulgare subsp. spontaneum\",\n    4417: \"Nuphar lutea\",\n    2338: \"uncultured bacterium\",\n    1475: \"Paenibacillus popilliae\",\n    1466: \"Paenibacillus lentimorbus\",\n    10452: \"Mamestra brassicae multiple nucleopolyhedrovirus\",\n    9236: \"Eudyptes chrysocome\",\n    284: \"Delftia acidovorans\",\n    6583: \"Pseudocardium sachalinense\",\n    6468: \"Omphalius pfeifferi\",\n    812: \"Chlamydia psittaci\",\n    811: \"Chlamydia pneumoniae\",\n    10192: \"Ploima\",\n    5555: \"Moesziomyces antarcticus\",\n    1761: \"Corynebacteriales\",\n    1882: \"Streptomycetales\",\n    684: \"Photobacterium damselae subsp. damselae\",\n    3944: \"Oenothera elata subsp. hookeri\",\n    515: \"Achromobacter xylosoxidans\",\n    1414: \"Bacillus halodurans\",\n    6464: \"Cymbula granatina\",\n    9574: \"Semnopithecus entellus\",\n    8771: \"Protobothrops elegans\",\n    8766: \"Protobothrops flavoviridis\",\n    8411: \"Pelophylax porosus brevipodus\",\n    10071: \"Abrothrix andinus\",\n    977: \"Cytophagaceae\",\n    9919: \"Bubalus bubalis\",\n    5590: \"Cladophialophora bantiana\",\n    601: \"Salmonella enterica subsp. enterica serovar Typhi\",\n    602: \"Salmonella enterica subsp. enterica serovar Typhimurium\",\n    677: \"Moritella marina\",\n    4612: \"commelinids incertae sedis\",\n    4293: \"fabids\",\n    4379: \"campanulids\",\n    5946: \"Sterkiella histriomuscorum\",\n    5359: \"Neolentinus dactyloides\",\n    8563: \"Eublepharis\",\n    8641: \"Naja annulifera\",\n    1977: \"Streptomyces abikoensis\",\n    1984: \"Streptomyces salmonis\",\n    593: \"Salmonella enterica subsp. enterica serovar Dublin\",\n    11539: \"Influenza B virus (B/Memphis/3/89)\",\n    7978: \"Balitoridae\",\n    7975: \"Nemacheilus\",\n    13680: \"Scomberomorus maculatus\",\n    9998: \"Urocitellus townsendii\",\n    11559: \"Influenza C virus (C/Johannesburg/1/66)\",\n    14098: \"Epidryos allenii\",\n    4848: \"Choanephoraceae\",\n    10964: \"Rabbit rotavirus strain Alabama\",\n    4659: \"Orchidantha siamensis\",\n    6642: \"Eledone cirrhosa\",\n    1174: \"Nostoc sp. PCC 7120\",\n    7104: \"Mythimna\",\n    11770: \"Feline leukemia virus strain B/lambda-B1\",\n    11771: \"Feline leukemia virus strain C/Sarma\",\n    11299: \"Rabies virus strain Pasteur vaccin\",\n    8768: \"Protobothrops mucrosquamatus\",\n    5055: \"Aspergillus awamori\",\n    4994: \"Kondoa phyllada\",\n    5287: \"Sakaguchia dacryoidea\",\n    10394: \"Papiine gammaherpesvirus 1\",\n    510: \"Cupriavidus necator\",\n    10416: \"Hepatitis B virus subtype adr\",\n    10417: \"Hepatitis B virus subtype adw\",\n    1000: \"Tenacibaculum maritimum\",\n    11533: \"Influenza B virus (B/Ibaraki/2/85)\",\n    11544: \"Influenza B virus (B/Singapore/222/79)\",\n    5420: \"Phaffia\",\n    473: \"Acinetobacter calcoaceticus subsp. anitratus\",\n    5239: \"Thanatephorus cucumeris\",\n    5565: \"Sclerotium\",\n    8701: \"Eristicophis\",\n    8702: \"Eristicophis macmahoni\",\n    10745: \"Teseptimavirus\",\n    7768: \"Myxininae\",\n    10982: \"Bombyx mori cypovirus 1\",\n    4514: \"Hordeum vulgare subsp. vulgare\",\n    4730: \"Sparganium americanum\",\n    3209: \"Polytrichopsida\",\n    4991: \"Leucosporidium intermedium\",\n    6795: \"Eubrachyura\",\n    6803: \"Heterotremata\",\n    6699: \"Palaemon\",\n    2729: \"Buchnera aphidicola (Acyrthosiphon pisum)\",\n    1156: \"Arthrospira platensis\",\n    1312: \"Streptococcus dysgalactiae subsp. equisimilis\",\n    5273: \"Ustilago hordei\",\n    8581: \"Erythrolamprus\",\n    6352: \"Hediste diversicolor\",\n    6128: \"Acropora formosa\",\n    5856: \"Plasmodium vivax Sal-1\",\n    1155: \"Limnospira maxima\",\n    10538: \"Duck adenovirus 1\",\n    8119: \"Hypsophrys nicaraguensis\",\n    12951: \"Arthurdendyus triangulatus\",\n    11489: \"Influenza A virus (A/X-31(H3N2))\",\n    1020: \"Thiotrichaceae\",\n    7976: \"Barbatula barbatula\",\n    5510: \"[Nectria] haematococca\",\n    9045: \"Lophura leucomelanos\",\n    9047: \"Lophura swinhoii\",\n    12982: \"Cacatua galerita\",\n    9155: \"Baeolophus inornatus\",\n    257: \"Salegentibacter salegens\",\n    260: \"Zobellia uliginosa\",\n    8171: \"Pagrus major\",\n    857: \"Filifactor alocis\",\n    1723: \"Leifsonia aquatica\",\n    6505: \"Aplysia fasciata\",\n    2167: \"Methanothermobacter wolfeii\",\n    2166: \"Methanothermobacter thermautotrophicus\",\n    12231: \"Watermelon mosaic virus\",\n    1546: \"Dendrosporobacter quercicolus\",\n    2011: \"Microbispora rosea subsp. aerata\",\n    5096: \"Elaphomycetaceae\",\n    5138: \"Pyricularia grisea\",\n    6555: \"Scapharca broughtonii\",\n    592: \"Salmonella enterica subsp. enterica serovar Enteritidis\",\n    13710: \"Magnolia ovata\",\n    11639: \"Alpharetrovirus\",\n    11762: \"Gammaretrovirus\",\n    12879: \"Panicum mosaic satellite virus\",\n    80: \"Caulobacter vibrioides\",\n    9156: \"Cyanistes caeruleus\",\n    4971: \"Bullera alba\",\n    10635: \"Murine polyomavirus strain A3\",\n    5646: \"Sterigmatosporidium\",\n    2913: \"Lingulodinium polyedra\",\n    4471: \"Lemna minuta\",\n    8140: \"Oreochromis urolepis hornorum\",\n    10460: \"Antheraea pernyi nucleopolyhedrovirus\",\n    5072: \"Aspergillus nidulans\",\n    9571: \"Piliocolobus badius\",\n    4985: \"Sporobolomyces\",\n    4259: \"Anisocarpus\",\n    5767: \"Tetramitus jugosus\",\n    12133: \"Human rhinovirus sp.\",\n    12415: \"Halobacterium phage phiH\",\n    3666: \"Cucurbita hybrid cultivar\",\n    2780: \"Gracilaria bursa-pastoris\",\n    5582: \"Beauveria bassiana\",\n    10488: \"Invertebrate iridescent virus 6\",\n    6066: \"Hymeniacidon perlevis\",\n    7404: \"Cotesia kariyai\",\n    9500: \"Alouatta guariba\",\n    36: \"Corallococcus coralloides\",\n    10777: \"Staphylococcus virus 13\",\n    10807: \"Aedes aegypti densovirus\",\n    11512: \"Influenza A virus (A/swine/New Jersey/11/1976(H1N1))\",\n    10700: \"Lambdavirus\",\n    1196: \"Microchaete\",\n    6517: \"Diaulula\",\n    12279: \"Beet ringspot virus\",\n    12290: \"Pea enation mosaic virus 1\",\n    6777: \"Chaceon quinquedens\",\n    5945: \"Sterkiella nova\",\n    5951: \"Stylonychia pustulata\",\n    8580: \"Coelognathus radiatus\",\n    8209: \"Notothenia neglecta\",\n    11555: \"Influenza C virus (C/California/78)\",\n    11558: \"Influenza C virus (C/Hyogo/1/83)\",\n    11562: \"Influenza C virus (C/Mississippi/80)\",\n    11565: \"Influenza C virus (C/pig/Beijing/115/81)\",\n    11563: \"Influenza C virus (C/Nara/82)\",\n    11561: \"Influenza C virus (C/Kyoto/41/82)\",\n    11268: \"Ebola virus sp.\",\n    10448: \"Choristoneura fumiferana multiple nucleopolyhedrovirus\",\n    5971: \"Oligotrichia\",\n    11455: \"Influenza A virus (A/Puerto Rico/8/1934(H1N1))\",\n    8989: \"Pipile pipile\",\n    6635: \"Nototodarus sloanii\",\n    11478: \"Influenza A virus (A/Texas/1/68(H2N2))\",\n    11415: \"Influenza A virus (A/equine/Sao Paulo/1/76(H7N7))\",\n    11416: \"Influenza A virus (A/equine/Switzerland/137/72(H7N7))\",\n    11409: \"Influenza A virus (A/equine/Newmarket/1/77(H7N7))\",\n    11398: \"Influenza A virus (A/equine/Detroit/1/64(H7N7))\",\n    11395: \"Influenza A virus (A/equine/Cambridge/1/73(H7N7))\",\n    11396: \"Influenza A virus (A/equine/C.Detroit/1/64(H7N7))\",\n    11394: \"Influenza A virus (A/equine/Cambridge/1/63(H7N7))\",\n    11456: \"Influenza A virus (A/Queensland/7/70(H3N2))\",\n    10819: \"African cassava mosaic virus - [Nigeria]\",\n    10828: \"Potato yellow mosaic virus - [Venezuela]\",\n    130: \"Ancylobacter vacuolatus\",\n    9007: \"Odontophoridae\",\n    11526: \"Influenza B virus (B/Bonn/43)\",\n    11546: \"Influenza B virus (B/USSR/100/83)\",\n    5289: \"Sporidiobolales\",\n    9229: \"Psittacula eupatria\",\n    10079: \"Abrothrix jelskii\",\n    3290: \"Polypodiopsida\",\n    12563: \"Sulfolobus spindle-shaped virus 1\",\n    7751: \"Lampetra tridentata\",\n    10110: \"Mus terricolor\",\n    7457: \"Polistes jokahamae\",\n    13545: \"Geomys jugossicularis jugossicularis\",\n    7087: \"Anoplotrupes stercorosus\",\n    8489: \"Mauremys reevesii\",\n    12393: \"Enterobacteria phage PR772\",\n    9427: \"Lophostoma silvicolum\",\n    8640: \"Naja anchietae\",\n    1172: \"Trichormus variabilis\",\n    6649: \"Enteroctopus dofleini\",\n    1139: \"Synechococcus elongatus PCC 6301\",\n    10458: \"Bombyx mori nucleopolyhedrovirus\",\n    7105: \"Mythimna separata\",\n    8878: \"Lophodytes cucullatus\",\n    5458: \"Colletotrichum lindemuthianum\",\n    4127: \"Cuscuteae\",\n    7809: \"Carcharhinus perezii\",\n    10447: \"Galleria mellonella MNPV\",\n    7692: \"Apostichopus japonicus\",\n    11471: \"Influenza A virus (A/turkey/Ontario/6118/1968(H8N4))\",\n    12396: \"Enterobacteria phage L17\",\n    12395: \"Enterobacteria phage PR4\",\n    12394: \"Enterobacteria phage PR5\",\n    2963: \"Tovellia coronata\",\n    111: \"Bradyrhizobium denitrificans\",\n    8935: \"Streptopelia risoria\",\n    10751: \"Bacillus phage M2\",\n    8750: \"Crotalus oreganus lutosus\",\n    12033: \"Enterobacteria phage ZR\",\n    10597: \"Human papillomavirus type 57\",\n    10603: \"Human papillomavirus type 10\",\n    10581: \"Human papillomavirus type 16\",\n    10582: \"Human papillomavirus type 18\",\n    10612: \"Human papillomavirus type 32\",\n    10613: \"Human papillomavirus type 34\",\n    10619: \"Human papillomavirus type 53\",\n    10578: \"Human papillomavirus 5\",\n    2244: \"Halorubrum chaoviator\",\n    10559: \"Deltapapillomavirus 4\",\n    11964: \"Macaque simian foamy virus\",\n    8708: \"Daboia siamensis\",\n    12391: \"Enterobacteria phage K1F\",\n    8159: \"Pseudocaranx dentex\",\n    11231: \"Measles virus strain Biken\",\n    5713: \"Parabodo caudatus\",\n    11349: \"Influenza A virus (A/mallard/Alberta/35/1976(H1N1))\",\n    11364: \"Influenza A virus (A/duck/Hong Kong/7/1975(H3N2))\",\n    11434: \"Influenza A virus (A/mallard/Astrakhan/263/1982(H14N5))\",\n    11806: \"Finkel-Biskis-Jinkins murine sarcoma virus\",\n    11897: \"UR2 sarcoma virus\",\n    8680: \"Hydrophis stokesii\",\n    8424: \"Sooglossus\",\n    10865: \"Xanthomonas phage Xf\",\n    5166: \"Ceratocystiopsis minuta-bicolor\",\n    5167: \"Ceratocystiopsis minuta\",\n    5165: \"Ceratocystiopsis minima\",\n    6437: \"Themiste hennahi\",\n    9444: \"Strepsirrhini\",\n    11445: \"Influenza A virus (A/New Jersey/8/1976(H1N1))\",\n    11465: \"Influenza A virus (A/Taiwan/1/1986(H1N1))\",\n    11380: \"Influenza A virus (A/Fort Monmouth/1/1947-mouse adapted(H1N1))\",\n    11467: \"Influenza A virus (A/turkey/Ireland/1378/1983(H5N8))\",\n    11470: \"Influenza A virus (A/turkey/Ontario/7732/1966(H5N9))\",\n    11412: \"Influenza A virus (A/equine/Prague/1/1956(H7N7))\",\n    11417: \"Influenza A virus (A/equine/Tennessee/5/1986(H3N8))\",\n    11406: \"Influenza A virus (A/equine/London/1416/1973(H7N7))\",\n    11503: \"Influenza A virus (A/swine/Iowa/17672/1988(H1N1))\",\n    11500: \"Influenza A virus (A/swine/Iowa/15/1930(H1N1))\",\n    11458: \"Influenza A virus (A/ruddy turnstone/New Jersey/47/1985(H4N6))\",\n    11488: \"Influenza A virus (A/Wisconsin/3523/1988(H1N1))\",\n    11511: \"Influenza A virus (A/swine/Netherlands/12/1985(H1N1))\",\n    11469: \"Influenza A virus (A/turkey/Minnesota/1661/1981(H1N1))\",\n    11474: \"Influenza A virus (A/Tokyo/3/1967(H2N2))\",\n    11427: \"Influenza A virus (A/Leningrad/134/47/1957(H2N2))\",\n    11337: \"Influenza A virus (A/Chile/1/1983(H1N1))\",\n    4916: \"Lachancea thermotolerans\",\n    9129: \"Zaratornis stresemanni\",\n    11481: \"Influenza A virus (A/USSR/90/1977(H1N1))\",\n    11480: \"Influenza A virus (A/Udorn/307/1972(H3N2))\",\n    11487: \"Influenza A virus (A/Wilson-Smith/1933(H1N1))\",\n    11463: \"Influenza A virus (A/Singapore/1/1957(H2N2))\",\n    11457: \"Influenza A virus (A/RI/5-/1957(H2N2))\",\n    11356: \"Influenza A virus (A/chicken/Germany/N/1949(H10N7))\",\n    11442: \"Influenza A virus (A/mink/Sweden/1984(H10N4))\",\n    11490: \"Influenza A virus (A/swine/29/1937(H1N1))\",\n    11492: \"Influenza A virus (A/swine/Cambridge/1/1935(H1N1))\",\n    11494: \"Influenza A virus (A/swine/Dandong/9/1983(H3N2))\",\n    11498: \"Influenza A virus (A/swine/Hong Kong/126/1982(H3N2))\",\n    11508: \"Influenza A virus (A/swine/Italy/839/1989(H1N1))\",\n    11507: \"Influenza A virus (A/swine/Italy/141/1981(H1N1))\",\n    11506: \"Influenza A virus (A/swine/Italy/2/1979(H1N1))\",\n    11505: \"Influenza A virus (A/swine/Italy/437/1976(H1N1))\",\n    11519: \"Influenza A virus (A/swine/Wisconsin/1/1961(H1N1))\",\n    11518: \"Influenza A virus (A/swine/Wisconsin/1/1957(H1N1))\",\n    11510: \"Influenza A virus (A/swine/May/1954(H1N1))\",\n    11491: \"Influenza A virus (A/swine/41/1949(H1N1))\",\n    11502: \"Influenza A virus (A/swine/Iowa/1946(H1N1))\",\n    11509: \"Influenza A virus (A/swine/Jamesburg/1942(H1N1))\",\n    11513: \"Influenza A virus (A/swine/Ohio/23/1935(H1N1))\",\n    11376: \"Influenza A virus (A/England/19/1955(H1N1))\",\n    11400: \"Influenza A virus (A/Hickox/1940(H1N1))\",\n    11466: \"Influenza A virus (A/teal/Iceland/29/1980(H7N7))\",\n    11350: \"Influenza A virus (A/duck/Australia/749/1980(H1N1))\",\n    11352: \"Influenza A virus (A/duck/Beijing/1/1978(H3N6))\",\n    11355: \"Influenza A virus (A/duck/england/1/1962(H4N6))\",\n    11354: \"Influenza A virus (A/duck/England/1/1956(H11N6))\",\n    11382: \"Influenza A virus (A/fowl/Dobson/'Dutch'/1927(H7N7))\",\n    11386: \"Influenza A virus (A/gull/Maryland/5/1977(H11N9))\",\n    11367: \"Influenza A virus (A/duck/Memphis/928/1974(H3N8))\",\n    11371: \"Influenza A virus (A/duck/Pennsylvania/1/1969(H6N1))\",\n    11368: \"Influenza A virus (A/duck/Manitoba/1/1953(H10N7))\",\n    11440: \"Influenza A virus (A/Memphis/6/1986(H3N2))\",\n    11438: \"Influenza A virus (A/Memphis/1/1971(H3N2))\",\n    11441: \"Influenza A virus (A/Memphis/8/1988(H3N2))\",\n    11323: \"Influenza A virus (A/Anas acuta/Primorje/695/1976(H2N3))\",\n    11461: \"Influenza A virus (A/shearwater/Australia/1/1972(H6N5))\",\n    11516: \"Influenza A virus (A/swine/Tennessee/26/1977(H1N1))\",\n    11501: \"Influenza A virus (A/swine/Iowa/1976/1931(H1N1))\",\n    11499: \"Influenza A virus (A/swine/Hong Kong/127/1982(H3N2))\",\n    11497: \"Influenza A virus (A/swine/Hong Kong/81/1978(H3N2))\",\n    11496: \"Influenza A virus (A/swine/Hong Kong/6/1976(H3N2))\",\n    11504: \"Influenza A virus (A/Swine/Indiana/1726/1988(H1N1))\",\n    11429: \"Influenza A virus (A/Loyang/4/1957(H1N1))\",\n    11477: \"Influenza A virus (A/tern/Turkmenia/18/1972(H3N3))\",\n    11459: \"Influenza A virus (A/seal/Mass/1/1980(H7N7))\",\n    11422: \"Influenza A virus (A/Kiev/59/1979(H1N1))\",\n    11324: \"Influenza A virus (A/Ann Arbor/6/1960(H2N2))\",\n    11387: \"Influenza A virus (A/gull/Maryland/704/1977(H13N6))\",\n    11327: \"Influenza A virus (A/Beijing/11/1956(H1N1))\",\n    11514: \"Influenza A virus (A/swine/Ontario/2/1981(H1N1))\",\n    11435: \"Influenza A virus (A/mallard/New York/6750/1978(H2N2))\",\n    11449: \"Influenza A virus (A/pintail/Alberta/119/1979(H4N6))\",\n    11446: \"Influenza A virus (A/nt/60/1968(H3N2))\",\n    11475: \"Influenza A virus (A/tern/Australia/G70C/1975(H11N9))\",\n    11476: \"Influenza A virus (A/tern/South Africa/1961(H5N3))\",\n    11436: \"Influenza A virus (A/mallard/New York/6874/1978(H3N2))\",\n    11381: \"Influenza A virus (A/Fort Warren/1/1950(H1N1))\",\n    11335: \"Influenza A virus (A/canberra grammar/1977(H3N2))\",\n    11328: \"Influenza A virus (A/Berkeley/1/1968(H2N2))\",\n    11322: \"Influenza A virus (A/Alaska/6/1977(H3N2))\",\n    11374: \"Influenza A virus (A/duck/Ukraine/1/1963(H3N8))\",\n    11347: \"Influenza A virus (A/duck/Alberta/60/1976(H12N5))\",\n    11401: \"Influenza A virus (A/equine/Jilin/1/1989(H3N8))\",\n    11341: \"Influenza A virus (A/chicken/Pennsylvania/1/1983(H5N2))\",\n    11332: \"Influenza A virus (A/budgerigar/Hokkaido/1/1977(H4N6))\",\n    11373: \"Influenza A virus (A/duck/Ukraine/2/1960(H11N8))\",\n    11353: \"Influenza A virus (A/duck/Czechoslovakia/1956(H4N6))\",\n    11370: \"Influenza A virus (A/duck/New Zealand/31/1976(H4N6))\",\n    11485: \"Influenza A virus (A/whale/Maine/328/1984(H13N2))\",\n    11447: \"Influenza A virus (A/Ohio/4/1983(H1N1))\",\n    11392: \"Influenza A virus (A/gull/Minnesota/945/1980(H13N6))\",\n    11389: \"Influenza A virus (A/gull/Maryland/1815/1979(H13N6))\",\n    11388: \"Influenza A virus (A/gull/Maryland/1824/1978(H13N9))\",\n    11390: \"Influenza A virus (A/gull/Astrakhan/227/1984(H13N6))\",\n    11403: \"Influenza A virus (A/equine/Kentucky/2/1986(H3N8))\",\n    11515: \"Influenza A virus (A/swine/Tennessee/24/1977(H1N1))\",\n    11342: \"Influenza A virus (A/chicken/Pennsylvania/1370/1983(H5N2))\",\n    11343: \"Influenza A virus (A/chicken/Pennsylvania/8125/1983(H5N2))\",\n    11473: \"Influenza A virus (A/turkey/Wisconsin/1/1966(H9N2))\",\n    11454: \"Influenza A virus (A/Port Chalmers/1/1973(H3N2))\",\n    11391: \"Influenza A virus (A/gull/Massachusetts/26/1980(H13N6))\",\n    11329: \"Influenza A virus (A/bh/1935(H1N1))\",\n    11325: \"Influenza A virus (A/Bangkok/1/1979(H3N2))\",\n    11431: \"Influenza A virus (A/mallard/Alberta/283/1977(H8N4))\",\n    11330: \"Influenza A virus (A/blue-winged teal/604/1978(H2N3))\",\n    11472: \"Influenza A virus (A/turkey/Oregon/1971(H7N3))\",\n    11326: \"Influenza A virus (A/black duck/Australia/702/1978(H3N8))\",\n    11346: \"Influenza A virus (A/duck/Alberta/28/1976(H4N6))\",\n    11439: \"Influenza A virus (A/Memphis/102/1972(H3N2))\",\n    11517: \"Influenza A virus (A/swine/Ukkel/1/1984(H3N2))\",\n    11493: \"Influenza A virus (A/swine/Colorado/1/1977(H3N2))\",\n    11348: \"Influenza A virus (A/duck/Alberta/78/1976(H3N2))\",\n    11321: \"Influenza A virus (A/Aichi/2/1968(H3N2))\",\n    11377: \"Influenza A virus (A/England/878/1969(H3N2))\",\n    11411: \"Influenza A virus (A/Hong Kong/5/1983(H3N2))\",\n    11421: \"Influenza A virus (A/Japan/305/1957(H2N2))\",\n    11425: \"Influenza A virus (A/Leningrad/134/1957(H2N2))\",\n    11336: \"Influenza A virus (A/camel/Mongolia/1982(H1N1))\",\n    11351: \"Influenza A virus (A/duck/Bavaria/2/1977(H1N1))\",\n    11358: \"Influenza A virus (A/duck/Hokkaido/8/1980(H3N8))\",\n    11365: \"Influenza A virus (A/duck/Ireland/113/1983(H5N8))\",\n    11366: \"Influenza A virus (A/duck/memphis/546/1976(H11N9))\",\n    11372: \"Influenza A virus (A/duck/ukraine/1/1960(H11N))\",\n    11393: \"Influenza A virus (A/equine/Algiers/1972(H3N8))\",\n    11399: \"Influenza A virus (A/equine/Fontainebleau/1976(H3N8))\",\n    11404: \"Influenza A virus (A/equine/Kentucky/1/1987(H3N8))\",\n    11407: \"Influenza A virus (A/equine/Miami/1/1963(H3N8))\",\n    11413: \"Influenza A virus (A/equine/Romania/1980(H3N8))\",\n    11419: \"Influenza A virus (A/equine/Uruguay/1/1963(H3N8))\",\n    11460: \"Influenza A virus (A/seal/Massachussetts/133/1982(H4N5))\",\n    11483: \"Influenza A virus (A/Victoria/3/1975(H3N2))\",\n    11383: \"Influenza A virus (A/chicken/Rostock/8/1934(H7N1))\",\n    11428: \"Influenza A virus (A/Leningrad/1954/1(H1N1))\",\n    11331: \"Influenza A virus (A/Brazil/11/1978(H1N1))\",\n    11420: \"Influenza A virus (A/India/6263/1980(H1N1))\",\n    11378: \"Influenza A virus (A/England/321/1977(H3N2))\",\n    11385: \"Influenza A virus (A/gray teal/Australia/2/1979(H4N4))\",\n    11345: \"Influenza A virus (A/chicken/Victoria/1985(H7N7))\",\n    11464: \"Influenza A virus (A/starling/Victoria/5156/1985(H7N7))\",\n    11344: \"Influenza A virus (A/chicken/Scotland/1959(H5N1))\",\n    6076: \"Anthoathecata\",\n    2956: \"Karlodinium veneficum\",\n    10550: \"Simian adenovirus 8\",\n    10536: \"unclassified Simian adenoviruses\",\n    11551: \"Influenza B virus (B/Yamagata/16/1988)\",\n    6224: \"Notospermus geniculatus\",\n    11333: \"Influenza A virus (A/California/10/1978(H1N1))\",\n    2863: \"Diatoma tenuis\",\n    11531: \"Influenza B virus (B/Hong Kong/8/1973)\",\n    10969: \"Simian rotavirus A strain RRV\",\n    11479: \"Influenza A virus (A/Texas/1/1977(H3N2))\",\n    13014: \"Myodes\",\n    9667: \"Neovison vison\",\n    887: \"Desulfarculus baarsii\",\n    341: \"Xanthomonas euvesicatoria\",\n    8529: \"Plestiodon skiltonianus\",\n    3203: \"Liochlaena subulata\",\n    8998: \"Tetraoninae\",\n    5805: \"Eimeria stiedai\",\n    5457: \"Colletotrichum gloeosporioides\",\n    11402: \"Influenza A virus (A/equine/Kentucky/1/1981(H3N8))\",\n    11405: \"Influenza A virus (A/equine/Lexington/1/1966(H7N7))\",\n    8564: \"Eublepharis macularius\",\n    9457: \"Galeopterus variegatus\",\n    11423: \"Influenza A virus (A/Korea/426/1968(H2N2))\",\n    9610: \"Vulpes lagopus\",\n    9594: \"Gorilla beringei\",\n    6097: \"Leptothecata\",\n    11410: \"Influenza A virus (A/Hong Kong/1/1968(H3N2))\",\n    6402: \"Metaphire sieboldi\",\n    5311: \"Syzygospora\",\n    11535: \"Influenza B virus (B/Lee/1940)\",\n    6607: \"Sepiida\",\n    10461: \"Betabaculovirus\",\n    10208: \"Flustrina\",\n    3096: \"Ettlia\",\n    6518: \"Peltodoris nobilis\",\n    4928: \"Wickerhamomyces pijperi\",\n    6138: \"Carybdeida\",\n    9862: \"Rusa unicolor\",\n    10671: \"Escherichia phage D108\",\n    3787: \"Pachyphytum oviferum\",\n    11275: \"Carp sprivivirus\",\n    9582: \"Hylobates albibarbis\",\n    5085: \"Aspergillus fumigatus\",\n    4905: \"Ogataea angusta\",\n    6353: \"Alitta virens\",\n    2126: \"Mycoplasma leachii PG50\",\n    10174: \"Fukomys damarensis\",\n    4906: \"Cyberlindnera saturnus\",\n    9955: \"Philantomba maxwellii\",\n    7749: \"Lethenteron camtschaticum\",\n    8763: \"Crotalus ravus\",\n    9854: \"Alces americanus\",\n    2859: \"Tryblionella apiculata\",\n    4963: \"Cyberlindnera mrakii\",\n    6877: \"Centruroides tecomanus\",\n    5312: \"Syzygospora pallida\",\n    7629: \"Heliocidaris crassispina\",\n    10050: \"Arvicola amphibius\",\n    6971: \"Ectobiidae\",\n    6621: \"Doryteuthis pealeii\",\n    7686: \"Holothuria poli\",\n    11549: \"Influenza B virus (B/Victoria/2/1987)\",\n    6474: \"Cerithideopsis scalariformis\",\n    4907: \"Wickerhamomyces canadensis\",\n    8914: \"Chroicocephalus ridibundus\",\n    5419: \"Hannaella luteola\",\n    4889: \"Zancudomyces culisetae\",\n    5156: \"Knoxdaviesia proteae\",\n    5119: \"Cytospora leucostoma\",\n    12702: \"Mamastrovirus 1\",\n    5638: \"Neofavolus alveolaris\",\n    6590: \"Phreagena soyoae\",\n    5573: \"Rhizoctonia\",\n    7665: \"Mesocentrotus franciscanus\",\n    6419: \"Poecilobdella manillensis\",\n    5386: \"Xerocomellus chrysenteron\",\n    4984: \"Bulleribasidium variabile\",\n    7545: \"Cryptops anomalans\",\n    6617: \"Heterololigo bleekeri\",\n    10223: \"Saccoglossus ruber\",\n    8223: \"Scombriformes\",\n    8188: \"Mugilomorphae\",\n    8246: \"Labriformes\",\n    5545: \"Trichoderma ceramicum\",\n    10781: \"Protoparvovirus\",\n    11017: \"Betapartitivirus\",\n    2839: \"Trieres chinensis\",\n    13826: \"Ophioglossidae\",\n    3254: \"Equisetidae\",\n    3248: \"Lycopodiopsida\",\n    5602: \"Gaeumannomyces radicicola\",\n    5563: \"Microdochium sorghi\",\n    12923: \"Exaiptasia pallida\",\n    5183: \"Pezoloma ericae\",\n    6044: \"Astrophorina\",\n    10930: \"Rotavirus A RVA/Cow-tc/USA/B223/1983/G10P[11]\",\n    5532: \"Albifimbria verrucaria\",\n    9478: \"Carlito syrichta\",\n    7785: \"Diplobatis ommata\",\n    1221: \"Pseudanabaenaceae\",\n    10626: \"Mesocricetus auratus polyomavirus 1\",\n    10634: \"Mus musculus polyomavirus 1\",\n    10625: \"Aves polyomavirus 1\",\n    10627: \"Bos taurus polyomavirus 1\",\n    10629: \"Human polyomavirus 1\",\n    10633: \"Macaca mulatta polyomavirus 1\",\n    5556: \"Cutaneotrichosporon moniliiforme\",\n    7690: \"Apostichopus parvimensis\",\n    5686: \"Wallacemonas collosoma\",\n    9197: \"Laniarius nigerrimus\",\n    7499: \"Termitoidae\",\n    12355: \"Escherichia virus T1\",\n    11613: \"Tomato spotted wilt tospovirus\",\n    13620: \"Tritia mutabilis\",\n    6485: \"Tritia reticulata\",\n    9320: \"Notamacropus\",\n    5716: \"Lafontella mariadeanei\",\n    10870: \"Escherichia virus M13\",\n    10876: \"Acholeplasma virus MV-L51\",\n    8390: \"Sclerophrys regularis\",\n    11212: \"Human rubulavirus 2\",\n    11203: \"Human rubulavirus 4\",\n    12837: \"Mammalian rubulavirus 5\",\n    11161: \"Mumps rubulavirus\",\n    11228: \"Simian rubulavirus\",\n    11571: \"Peribunyaviridae\",\n    11598: \"Orthohantavirus\",\n    12506: \"Dobrava-Belgrade orthohantavirus\",\n    11599: \"Hantaan orthohantavirus\",\n    11603: \"Prospect Hill orthohantavirus\",\n    11604: \"Puumala orthohantavirus\",\n    11608: \"Seoul orthohantavirus\",\n    11592: \"Orthonairovirus\",\n    11593: \"Crimean-Congo hemorrhagic fever orthonairovirus\",\n    11595: \"Dugbe orthonairovirus\",\n    12367: \"Chlamydia virus Chp1\",\n    12382: \"Mycobacterium virus I3\",\n    10871: \"Pseudomonas virus Pf1\",\n    7689: \"Apostichopus californicus\",\n    6384: \"Naididae\",\n    9130: \"Artamidae\",\n    11027: \"Onyong-nyong virus\",\n    11741: \"Visna-maedi virus\",\n    12038: \"Barley yellow dwarf virus MAV\",\n    12040: \"Barley yellow dwarf virus PAV\",\n    11619: \"Argentinian mammarenavirus\",\n    11630: \"Cali mammarenavirus\",\n    5937: \"Euplotoides octocarinatus\",\n    2775: \"Agarophyton chilense\",\n    2776: \"Agarophyton tenuistipitatum\",\n    5749: \"Microchloropsis salina\",\n    8916: \"Chroicocephalus novaehollandiae\",\n    11611: \"Orthotospovirus\",\n    5527: \"Trichocladium griseum\",\n    6915: \"Trichonephila clavipes\",\n    5145: \"Podospora anserina\",\n    5243: \"Rhizoctonia fusispora\",\n    2930: \"Alexandrium fraterculus\",\n}\n"
  },
  {
    "path": "pysradb/utils.py",
    "content": "import errno\nimport gzip\nimport io\nimport ntpath\nimport os\nimport shlex\nimport subprocess\nimport urllib.request as urllib_request\nimport warnings\n\nimport requests\nfrom requests.adapters import HTTPAdapter\nfrom requests.packages.urllib3.util.retry import Retry\n\nwarnings.filterwarnings(\"ignore\", category=UserWarning, module=\"tqdm\")\nfrom tqdm.autonotebook import tqdm\n\nfrom .exceptions import IncorrectFieldException\n\nwarnings.simplefilter(action=\"ignore\", category=FutureWarning)\n\n\ntqdm.pandas()\n\n\ndef path_leaf(path):\n    \"\"\"Get path's tail from a filepath.\n\n    Parameters\n    ----------\n    path: string\n          Filepath\n\n    Returns\n    -------\n    tail: string\n          Filename\n    \"\"\"\n    head, tail = ntpath.split(path)\n    return tail or ntpath.basename(head)\n\n\ndef requests_3_retries():\n    \"\"\"Generates a requests session object that allows 3 retries.\n\n    Returns\n    -------\n    session: requests.Session\n        requests session object that allows 3 retries for server-side\n        errors.\n    \"\"\"\n    session = requests.Session()\n    retry = Retry(\n        total=3,\n        backoff_factor=0.5,\n        status_forcelist=[500, 502, 503, 504],\n    )\n    adapter = HTTPAdapter(max_retries=retry)\n    session.mount(\"http://\", adapter)\n    session.mount(\"https://\", adapter)\n    return session\n\n\ndef scientific_name_to_taxid(name):\n    \"\"\"Converts a scientific name to its corresponding taxonomy ID.\n\n    Parameters\n    ----------\n    name: str\n        Scientific name of interest.\n\n    Returns\n    -------\n    taxid: str\n        Taxonomy Id of the Scientific name.\n\n    Raises\n    ------\n    IncorrectFieldException\n        If the scientific name cannot be found.\n\n    \"\"\"\n\n    session = requests_3_retries()\n    r = session.get(\n        \"https://www.ebi.ac.uk/ena/taxonomy/rest/scientific-name/\" + name,\n        timeout=10,\n    )\n    if r.status_code == 404:\n        raise IncorrectFieldException(f\"Unknown scientific name: {name}\")\n    r.raise_for_status()\n\n    try:\n        data = r.json()\n    except requests.exceptions.JSONDecodeError as e:\n        raise IncorrectFieldException(\n            f\"Failed to parse taxonomy response for '{name}'. \"\n            f\"API returned status {r.status_code} but invalid JSON. \"\n            f\"Response: {r.text[:200]}\"\n        ) from e\n\n    if not data or not isinstance(data, list) or len(data) == 0:\n        raise IncorrectFieldException(\n            f\"No taxonomy data found for scientific name: {name}\"\n        )\n\n    return data[0][\"taxId\"]\n\n\ndef unique(sequence):\n    \"\"\"Get unique elements from a list maintaining the order.\n\n    Parameters\n    ----------\n    input_list: list\n\n    Returns\n    -------\n    unique_list: list\n                 List with unique elements maintaining the order\n    \"\"\"\n    visited = set()\n    return [x for x in sequence if not (x in visited or visited.add(x))]\n\n\nclass TqdmUpTo(tqdm):\n    \"\"\"Alternative Class-based version of the above.\n    Provides `update_to(n)` which uses `tqdm.update(delta_n)`.\n    Inspired by [twine#242](https://github.com/pypa/twine/pull/242),\n    [here](https://github.com/pypa/twine/commit/42e55e06).\n\n    Credits:\n    https://github.com/tqdm/tqdm/blob/69326b718905816bb827e0e66c5508c9c04bc06c/examples/tqdm_wget.py\n    \"\"\"\n\n    def update_to(self, b=1, bsize=1, tsize=None):\n        \"\"\"\n        b  : int, optional\n            Number of blocks transferred so far [default: 1].\n        bsize  : int, optional\n            Size of each block (in tqdm units) [default: 1].\n        tsize  : int, optional\n            Total size (in tqdm units). If [default: None] remains unchanged.\n        \"\"\"\n        if tsize is not None:\n            self.total = tsize\n        self.update(b * bsize - self.n)  # will also set self.n = b * bsize\n\n\ndef _extract_first_field(data):\n    \"\"\"Extract first field from a list of fields.\"\"\"\n    return list(next(iter(zip(*data))))\n\n\ndef _find_aspera_keypath(aspera_dir=None):\n    \"\"\"Locate aspera key.\n\n    Parameters\n    ----------\n    aspera_dir: string\n                Location to aspera directory (optional)\n\n    Returns\n    -------\n    aspera_keypath: string\n                    Location to aspera key\n    \"\"\"\n    if aspera_dir is None:\n        aspera_dir = os.path.join(os.path.expanduser(\"~\"), \".aspera\")\n    aspera_keypath = os.path.join(\n        aspera_dir, \"connect\", \"etc\", \"asperaweb_id_dsa.openssh\"\n    )\n    if os.path.isfile(aspera_keypath):\n        return aspera_keypath\n\n\ndef mkdir_p(path):\n    \"\"\"Python version mkdir -p\n\n    Parameters\n    ----------\n    path : string\n           Path to directory to create\n    \"\"\"\n    if path:\n        try:\n            os.makedirs(path)\n        except OSError as exc:  # Python >2.5\n            if exc.errno == errno.EEXIST and os.path.isdir(path):\n                pass\n            else:\n                raise\n\n\ndef order_dataframe(df, columns):\n    \"\"\"Order a dataframe\n\n    Order a dataframe by moving the `columns` in the front\n\n    Parameters\n    ----------\n    df: Dataframe\n        Dataframe\n    columns: list\n             List of columns that need to be put in front\n    \"\"\"\n    remaining_columns = [w for w in df.columns if w not in columns]\n    df = df[columns + remaining_columns]\n    return df\n\n\ndef _get_url(url, download_to, show_progress=True):\n    \"\"\"Download anything at a given url.\n\n    Parameters\n    ----------\n    url: string\n         http/https/ftp url\n    download_to: string\n                 File location to write the downloaded file to\n    show_progress: bool\n                   Set to True by default to print progress bar\n    \"\"\"\n    desc_file = \"Downloading {}\".format(url.split(\"/\")[-1])\n    mkdir_p(os.path.dirname(download_to))\n    if show_progress:\n        with TqdmUpTo(\n            unit=\"B\", unit_scale=True, unit_divisor=1024, miniters=1, desc=desc_file\n        ) as t:\n            urllib_request.urlretrieve(\n                url, download_to, reporthook=t.update_to, data=None\n            )\n    else:\n        urllib_request.urlretrieve(url, download_to)\n\n\ndef run_command(command, verbose=False):\n    \"\"\"Run a shell command\"\"\"\n    process = subprocess.Popen(\n        shlex.split(command), stdout=subprocess.PIPE, stderr=subprocess.STDOUT\n    )\n\n    while True:\n        output = process.stdout.readline().strip()\n        output = output.decode(\"utf-8\")\n        if output == \"\" and process.poll() is not None:\n            break\n        if output:\n            if verbose:\n                print((str(output.strip())))\n    rc = process.poll()\n    return rc\n\n\ndef get_gzip_uncompressed_size(filepath):\n    \"\"\"Get uncompressed size of a .gz file\n\n    Parameters\n    ----------\n    filepath: string\n              Path to input file\n\n    Returns\n    -------\n    filesize: int\n              Uncompressed file size\n    \"\"\"\n    with gzip.open(filepath, \"rb\") as file_obj:\n        return file_obj.seek(0, io.SEEK_END)\n\n\ndef confirm(preceeding_text):\n    \"\"\"Confirm user input.\n\n    Parameters\n    ----------\n    preceeding_text: str\n                     Text to print\n\n    Returns\n    -------\n    response: bool\n    \"\"\"\n    print(os.linesep, flush=True)\n    notification_str = \"Please respond with 'y' or 'n'\"\n    while True:\n        choice = input(\"{} [Y/n]: \".format(preceeding_text)).lower()\n        if choice in [\"yes\", \"y\"] or not choice:\n            return True\n        if choice in [\"no\", \"n\"]:\n            return False\n        print(notification_str, flush=True)\n\n\ndef copyfileobj(fsrc, fdst, bufsize=16384, filesize=None, desc=\"\"):\n    \"\"\"Copy file object with a progress bar.\n\n    Parameters\n    ----------\n    fsrc: filehandle\n          Input file handle\n    fdst: filehandle\n          Output file handle\n    bufsize: int\n             Length of output buffer\n    filesize: int\n              Input file file size\n    desc: string\n          Description for tqdm status\n    \"\"\"\n    with tqdm(\n        total=filesize,\n        unit=\"B\",\n        unit_scale=True,\n        miniters=1,\n        unit_divisor=1024,\n        desc=desc,\n    ) as pbar:\n        while True:\n            buf = fsrc.read(bufsize)\n            if not buf:\n                break\n            fdst.write(buf)\n            pbar.update(len(buf))\n"
  },
  {
    "path": "requirements.txt",
    "content": "lxml>=4.6.3\npandas>=1.3.2\nrequests>=2.26.0\ntqdm>=4.62.1\nxmltodict>=0.12.0\n"
  },
  {
    "path": "setup.cfg",
    "content": "[bumpversion]\ncurrent_version = 2.4.1\ncommit = True\ntag = False\nparse = (?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(\\-(?P<release>[a-z]+)(?P<build>\\d+))?\nserialize =\n\t{major}.{minor}.{patch}-{release}{build}\n\t{major}.{minor}.{patch}\n\n[bumpversion:part:release]\noptional_value = prod\nfirst_value = dev\nvalues =\n\tdev\n\tprod\n\n[bumpversion:part:build]\n\n[bumpversion:file:setup.py]\nsearch = version=\"{current_version}\"\nreplace = version=\"{new_version}\"\n\n[bumpversion:file:pysradb/__init__.py]\nsearch = __version__ = \"{current_version}\"\nreplace = __version__ = \"{new_version}\"\n\n[flake8]\nexclude = docs\n\n[aliases]\ntest = pytest\n\n[tool:pytest]\ncollect_ignore = [\"setup.py\"]\n"
  },
  {
    "path": "tests/conftest.py",
    "content": "# contents of conftest.py\nimport pytest\n\n# Test fixtures will be added here as needed for SRAweb and GEOweb tests\n"
  },
  {
    "path": "tests/data/test_search/ena_search_test1.txt",
    "content": "run_accession\nSRR492850\nSRR500270\nSRR609956\nSRR609957\nSRR609958\nSRR609959\nSRR609960\nSRR609961\nSRR609962\nSRR609963\nSRR609964\nSRR609965\nSRR609966\nSRR609967\nSRR609968\nSRR609969\nSRR609970\nSRR609971\nSRR609972\nSRR609973\nSRR609974\nSRR609975\nSRR609976\nSRR609977\nSRR609978\nSRR609979\nSRR609980\nSRR609981\nSRR609982\nSRR609983\nSRR609984\nSRR609985\nSRR609986\nSRR609987\nSRR609988\nSRR609989\nSRR609990\nSRR609991\nSRR609992\nSRR609993\nSRR609994\nSRR609995\nSRR609996\nSRR609997\nSRR609998\nSRR609999\nSRR610000\nSRR610001\nSRR610002\nSRR610003\nSRR610004\nSRR610005\nSRR610006\nSRR610007\nSRR610008\nSRR610009\nSRR610010\nSRR610011\nSRR610012\nSRR610013\nSRR610014\nSRR610015\nSRR610016\nSRR610017\nSRR610018\nSRR610019\nSRR610020\nSRR610021\nSRR610022\nSRR610023\nSRR610024\nSRR610025\nSRR610026\nSRR610027\nSRR610028\nSRR610029\nSRR610030\n"
  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_0.csv",
    "content": 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  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_0.json",
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  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_1.csv",
    "content": "run_accession,description\nERR1190989,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190990,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190991,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190992,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190993,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190994,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190995,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190996,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190997,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190998,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1190999,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191000,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191001,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191002,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191003,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191004,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191005,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191006,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191007,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191008,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191009,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191010,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191011,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191012,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191013,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191014,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191015,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191016,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191017,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191018,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191019,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191020,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191021,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191022,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191023,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191024,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191025,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191026,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191027,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1191028,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719518,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719519,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719520,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719521,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719522,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719523,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719524,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719525,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719526,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719527,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719528,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719529,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719530,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719531,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719532,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719533,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719534,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719535,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719536,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1719537,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\nERR1797529,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.\nERR1797530,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.\nERR1797531,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.\nERR1797532,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.\nERR1802070,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802071,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802072,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802073,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802074,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802075,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802076,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802077,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802078,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1802079,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\nERR1856693,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\nERR1856694,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\nERR1856695,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\nERR1994959,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994960,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994961,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994962,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994963,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994964,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994965,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994966,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994967,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994968,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994969,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994970,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994971,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994972,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994973,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR1994974,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe\nERR2003518,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003519,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003520,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003521,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003522,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003523,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003524,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003525,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003526,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003527,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003528,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003529,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003530,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003531,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003532,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003533,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003534,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003535,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003536,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003537,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003538,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003539,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003540,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003541,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003542,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003543,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003544,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003545,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003546,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003547,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003548,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003549,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003550,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003551,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003552,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003553,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2003554,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\nERR2093966,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.\nERR2093967,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.\nERR2093968,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.\nERR2093969,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.\nERR2193146,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193147,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193148,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193149,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193150,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193151,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193152,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193153,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193154,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193155,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193156,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193157,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193158,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2193159,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples\nERR2201443,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201444,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201445,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201446,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201447,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201448,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201449,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201450,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2201451,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus\nERR2528907,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528908,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528909,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528910,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528911,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528912,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528913,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528914,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528915,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2528916,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\"\nERR2660262,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660263,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660264,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660265,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660266,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660267,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660269,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2660271,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions\nERR2681846,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681847,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681848,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681849,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681850,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681851,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681852,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681853,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681854,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681855,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681856,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2681857,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae\nERR2812328,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812329,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812330,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812331,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812332,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812333,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812334,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812335,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812336,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812337,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812338,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812339,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812340,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812341,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812342,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812343,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812344,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812345,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812346,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812347,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812348,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812349,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812350,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812351,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812352,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812353,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812354,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812355,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812356,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812357,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812358,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812359,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812360,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812361,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812362,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812363,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812364,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812365,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812366,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812367,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812368,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812369,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812370,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812371,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812372,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812373,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812374,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812375,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812376,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812377,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812378,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812379,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812380,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812381,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812382,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812383,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812384,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812385,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812386,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812387,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812388,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812389,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812390,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812391,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812392,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812393,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812394,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812395,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812396,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812397,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812398,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812399,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812400,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812401,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812402,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812403,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812404,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812405,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812406,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812407,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812408,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812409,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812410,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812411,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812412,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812413,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812414,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812415,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812416,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812417,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812418,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812419,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812420,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812421,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812422,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812423,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812424,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812425,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812426,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812427,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812428,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812429,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812430,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812431,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812432,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812433,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812434,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812435,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812436,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812437,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812438,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812439,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812440,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812441,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812442,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2812443,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\nERR2976734,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976735,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976736,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976737,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976738,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976739,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976740,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976741,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976742,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976743,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976744,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR2976745,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B\nERR3218426,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218427,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218428,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218429,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218430,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218431,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218432,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218433,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218434,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218435,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218436,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218437,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218438,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218439,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218440,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3218441,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.\nERR3276516,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276517,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276518,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276519,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276520,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276521,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276522,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276523,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276524,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276525,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276526,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3276527,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\nERR3366404,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\nERR3366405,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\nERR3366406,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\nERR3366407,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\nERR3771179,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771180,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771181,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771182,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771183,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771184,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771185,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771186,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771187,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771188,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771189,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771190,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771191,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771192,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771193,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR3771194,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\nERR419248,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt\nERR419249,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt\nERR419250,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt\nERR419251,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt\nERR419252,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt\nERR466122,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI\nERR466123,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI\nERR466124,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI\nERR466125,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI\nERR599189,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis\nERR599190,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis\nERR599191,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis\nERR599192,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis\nERR601607,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\nERR601608,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\nERR601609,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\nERR601610,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\nERR605044,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\nERR605045,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\nERR605046,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\nERR618768,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618769,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618770,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618771,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618772,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618773,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618774,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nERR618775,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\nSRR10100140,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 3\nSRR10100141,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 2\nSRR10100142,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 1\nSRR10174361,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174368,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo\nSRR10174369,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo\nSRR10174370,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo\nSRR10174375,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174376,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174377,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174378,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174379,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174380,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174381,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10174382,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte\nSRR10294592,Illumina HiSeq 2500 sequencing; GSM4125802: Replicate 1 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294593,Illumina HiSeq 2500 sequencing; GSM4125803: Replicate 2 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294594,Illumina HiSeq 2500 sequencing; GSM4125804: Replicate 1 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294595,Illumina HiSeq 2500 sequencing; GSM4125805: Replicate 2 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294596,Illumina HiSeq 2500 sequencing; GSM4125806: Flash freeze harvesting with anisomycin ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294597,Illumina HiSeq 2500 sequencing; GSM4125807: Flash freeze harvesting with harringtonine ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294598,Illumina HiSeq 2500 sequencing; GSM4125808: Flash freeze harvesting with serine hydroxamate ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR10294600,Illumina HiSeq 2500 sequencing; GSM4125810: Total RNA treated with MNase ribosome profiling; Haloferax volcanii DS2; OTHER\nSRR1040263,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 1\nSRR1040415,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome footprint fraction replicate 1\nSRR1040423,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 1\nSRR1040427,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 2\nSRR1042900,Illumina Genome Analyzer II sequencing; GSM1279707: Ribosome Profiling with Control siRNA; Homo sapiens; OTHER\nSRR1042901,Illumina Genome Analyzer II sequencing; GSM1279708: Ribosome Profiling with AUF1 siRNA; Homo sapiens; OTHER\nSRR1042902,Illumina Genome Analyzer II sequencing; GSM1279709: Ribosome Profiling with HuR siRNA; Homo sapiens; OTHER\nSRR1067765,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER\nSRR1067766,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER\nSRR1067767,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER\nSRR1067768,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER\nSRR1067769,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER\nSRR1067770,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER\nSRR1067771,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER\nSRR1067772,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER\nSRR10959087,NextSeq 500 sequencing; GSM4282352: Ribosome profiling_sgABCE1-1; Homo sapiens; OTHER\nSRR10959088,NextSeq 500 sequencing; GSM4282353: Ribosome profiling_sgABCE1-2; Homo sapiens; OTHER\nSRR10959089,NextSeq 500 sequencing; GSM4282354: Ribosome profiling_sgNT1; Homo sapiens; OTHER\nSRR10959090,NextSeq 500 sequencing; GSM4282355: Ribosome profiling_sgNT2; Homo sapiens; OTHER\nSRR11217089,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82\nSRR11217090,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82\nSRR1167750,Illumina HiSeq 2000 sequencing; GSM1326110: M2G Ribosome profiling; Caulobacter vibrioides NA1000; OTHER\nSRR1167751,Illumina HiSeq 2000 sequencing; GSM1326111: PYE Ribosome profiling; Caulobacter vibrioides NA1000; OTHER\nSRR11794832,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells\nSRR11794833,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells\nSRR11794834,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells\nSRR11794835,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells\nSRR11794836,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells\nSRR11794837,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells\nSRR11794840,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells\nSRR11794841,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells\nSRR11794842,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells\nSRR11794843,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells\nSRR11794844,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KOWT cells\nSRR11794845,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells\nSRR11794846,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KO cells\nSRR11794847,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells\nSRR11794848,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells\nSRR11794849,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells\nSRR11836448,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs\nSRR11836450,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs\nSRR11836452,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs\nSRR11836454,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs\nSRR11837742,Illumina NovaSeq 6000 sequencing; GSM4567011: Gcn2 WT +AA - Ribosome profiling; Mus musculus; OTHER\nSRR11837743,Illumina NovaSeq 6000 sequencing; GSM4567012: Gcn2 WT -Leu - Ribosome profiling; Mus musculus; OTHER\nSRR11837744,Illumina NovaSeq 6000 sequencing; GSM4567013: Gcn2 KO +AA - Ribosome profiling; Mus musculus; OTHER\nSRR11837745,Illumina NovaSeq 6000 sequencing; GSM4567014: Gcn2 KO -Leu - Ribosome profiling; Mus musculus; OTHER\nSRR12164922,\"Illumina HiSeq 2500 sequencing; GSM4658960: Ribosome profiling from untreated cells, rep 1; Saccharomyces cerevisiae; OTHER\"\nSRR12164924,\"Illumina HiSeq 2500 sequencing; GSM4658962: Ribosome profiling from untreated cells, rep 2; Saccharomyces cerevisiae; OTHER\"\nSRR12164926,\"Illumina HiSeq 2500 sequencing; GSM4658964: Ribosome profiling from untreated cells, rep 3; Saccharomyces cerevisiae; OTHER\"\nSRR12164928,\"Illumina HiSeq 2500 sequencing; GSM4658966: Ribosome profiling from radicicol cells, rep 1; Saccharomyces cerevisiae; OTHER\"\nSRR12164930,\"Illumina HiSeq 2500 sequencing; GSM4658968: Ribosome profiling from radicicol cells, rep 2; Saccharomyces cerevisiae; OTHER\"\nSRR12164932,\"Illumina HiSeq 2500 sequencing; GSM4658970: Ribosome profiling from radicicol cells, rep 3; Saccharomyces cerevisiae; OTHER\"\nSRR12185464,\"Illumina HiSeq 2500 sequencing; GSM4663991: control mouse brain, SMN-specific ribosome profiling, P5, rep 1; Mus musculus; OTHER\"\nSRR12185465,\"Illumina HiSeq 2500 sequencing; GSM4663992: control mouse brain, SMN-specific ribosome profiling, P5, rep 2; Mus musculus; OTHER\"\nSRR12185466,\"Illumina HiSeq 2500 sequencing; GSM4663993: control mouse brain, SMN-specific ribosome profiling, P5, rep 3; Mus musculus; OTHER\"\nSRR12185467,\"Illumina HiSeq 2500 sequencing; GSM4663994: control mouse brain, IgG control ribosome profiling, P5, rep 1; Mus musculus; OTHER\"\nSRR1258539,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 1 of 2\"\nSRR1258540,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 2 of 2\"\nSRR1258541,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 1 of 2\"\nSRR1258542,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 2 of 2\"\nSRR1258543,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, fragmented control\"\nSRR1258544,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, fragmented control\"\nSRR1425203,Illumina HiSeq 2000 sequencing; GSM1415871: ribosome profiling MicL t0; Escherichia coli; RNA-Seq\nSRR1425204,Illumina HiSeq 2000 sequencing; GSM1415872: ribosome profiling MicL t20; Escherichia coli; RNA-Seq\nSRR1583082,Illumina HiSeq 2000 sequencing; GSM1509451: Ribosome profiling data of untreated E. coli cells; Escherichia coli BW25113; RNA-Seq\nSRR1583083,Illumina HiSeq 2000 sequencing; GSM1509452: Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin; Escherichia coli BW25113; RNA-Seq\nSRR1583084,Illumina HiSeq 2000 sequencing; GSM1509453: Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin; Escherichia coli BW25113; RNA-Seq\nSRR1598971,Illumina Genome Analyzer II sequencing; GSM1248735: mock-transfected ribosome profiling; Homo sapiens; RNA-Seq\nSRR1598975,Illumina HiSeq 2000 sequencing; GSM1248729: miR-1-transfected ribosome profiling; Homo sapiens; RNA-Seq\nSRR1598981,Illumina Genome Analyzer II sequencing; GSM1248732: miR-155-transfected ribosome profiling; Homo sapiens; RNA-Seq\nSRR1660328,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660329,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660330,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660331,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660332,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660333,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660334,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1660335,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq\nSRR1661491,Illumina HiSeq 2000 sequencing; GSM1553248: Ribosome profiling rep1-SiControl-RPF; Homo sapiens; OTHER\nSRR1661492,Illumina HiSeq 2000 sequencing; GSM1553249: Ribosome profiling rep1-SiControl-input-ribominus; Homo sapiens; OTHER\nSRR1661493,Illumina HiSeq 2000 sequencing; GSM1553250: Ribosome profiling rep1-SiYTHDF1_1-RPF; Homo sapiens; OTHER\nSRR1661494,Illumina HiSeq 2000 sequencing; GSM1553251: Ribosome profiling rep1-SiYTHDF1_1-input-ribominus; Homo sapiens; OTHER\nSRR1661495,Illumina HiSeq 2000 sequencing; GSM1553252: Ribosome profiling rep2-SiControl-RPF; Homo sapiens; OTHER\nSRR1661496,Illumina HiSeq 2000 sequencing; GSM1553253: Ribosome profiling rep2-SiControl-input-ribominus; Homo sapiens; OTHER\nSRR1661497,Illumina HiSeq 2000 sequencing; GSM1553254: Ribosome profiling rep2-SiYTHDF1_8-RPF; Homo sapiens; OTHER\nSRR1661498,Illumina HiSeq 2000 sequencing; GSM1553255: Ribosome profiling rep2-SiYTHDF1_8-input-ribominus; Homo sapiens; OTHER\nSRR1763106,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate1\nSRR1763107,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate2\nSRR1765340,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate1\nSRR1765360,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate2\nSRR1840399,Illumina HiSeq 2000 sequencing; GSM1625823: Cotyledon (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq\nSRR1840401,Illumina HiSeq 2000 sequencing; GSM1625825: Cotyledon (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq\nSRR1840403,Illumina HiSeq 2000 sequencing; GSM1625827: Seed Coat (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq\nSRR1840405,Illumina HiSeq 2000 sequencing; GSM1625829: Seed Coat (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq\nSRR1840407,Illumina HiSeq 2000 sequencing; GSM1625831: Cotyledon (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq\nSRR1840409,Illumina HiSeq 2000 sequencing; GSM1625833: Cotyledon (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq\nSRR1840411,Illumina HiSeq 2000 sequencing; GSM1625835: Seed Coat (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq\nSRR1840413,Illumina HiSeq 2000 sequencing; GSM1625837: Seed Coat (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq\nSRR1840415,Illumina HiSeq 2000 sequencing; GSM1625839: Cotyledon (300-400 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq\nSRR1840417,Illumina HiSeq 2000 sequencing; GSM1625841: Cotyledon (300-400 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq\nSRR1964306,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER\nSRR1964307,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER\nSRR1964308,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER\nSRR1964309,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER\nSRR1964310,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER\nSRR1964311,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER\nSRR1964312,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER\nSRR1964313,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER\nSRR1964314,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER\nSRR1964315,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER\nSRR1964316,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER\nSRR1964317,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER\nSRR1964318,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER\nSRR1964319,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER\nSRR1964320,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER\nSRR1964321,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER\nSRR1964322,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER\nSRR1964323,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER\nSRR1964324,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER\nSRR1964325,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER\nSRR1964326,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER\nSRR1964327,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER\nSRR1964328,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER\nSRR1964329,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER\nSRR1991275,Illumina HiSeq 2000 sequencing; GSM1665594: swarmer M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR1991276,Illumina HiSeq 2000 sequencing; GSM1665595: early stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR1991277,Illumina HiSeq 2000 sequencing; GSM1665596: late stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR1991278,Illumina HiSeq 2000 sequencing; GSM1665597: early prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR1991279,Illumina HiSeq 2000 sequencing; GSM1665598: late prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR1991280,Illumina HiSeq 2000 sequencing; GSM1665599: post division M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq\nSRR2007064,\"Illumina HiSeq 2500 sequencing; GSM1666805: ATF4-/- ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\"\nSRR2007065,\"Illumina HiSeq 2500 sequencing; GSM1666806: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007066,\"Illumina HiSeq 2500 sequencing; GSM1666807: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007067,\"Illumina HiSeq 2500 sequencing; GSM1666808: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007068,\"Illumina HiSeq 2500 sequencing; GSM1666809: ATF4-/- ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007069,\"Illumina HiSeq 2500 sequencing; GSM1666810: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007070,\"Illumina HiSeq 2500 sequencing; GSM1666811: ATF4-/- ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007071,\"Illumina HiSeq 2500 sequencing; GSM1666812: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007072,\"Illumina HiSeq 2500 sequencing; GSM1666813: ATF4-/- ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007073,\"Illumina HiSeq 2500 sequencing; GSM1666814: ATF4-/- cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\"\nSRR2007074,\"Illumina HiSeq 2500 sequencing; GSM1666815: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007075,\"Illumina HiSeq 2500 sequencing; GSM1666816: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007076,\"Illumina HiSeq 2500 sequencing; GSM1666817: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007077,\"Illumina HiSeq 2500 sequencing; GSM1666818: ATF4-/- ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007078,\"Illumina HiSeq 2500 sequencing; GSM1666819: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007079,\"Illumina HiSeq 2500 sequencing; GSM1666820: ATF4-/- ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007080,\"Illumina HiSeq 2500 sequencing; GSM1666821: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007081,\"Illumina HiSeq 2500 sequencing; GSM1666822: ATF4-/- ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007082,\"Illumina HiSeq 2500 sequencing; GSM1666823: ATF4-/- cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\"\nSRR2007083,\"Illumina HiSeq 2500 sequencing; GSM1666824: ATF4-/- ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\"\nSRR2007084,\"Illumina HiSeq 2500 sequencing; GSM1666825: eIF2A S51A ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\"\nSRR2007085,\"Illumina HiSeq 2500 sequencing; GSM1666826: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007086,\"Illumina HiSeq 2500 sequencing; GSM1666827: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007087,\"Illumina HiSeq 2500 sequencing; GSM1666828: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007088,\"Illumina HiSeq 2500 sequencing; GSM1666829: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007089,\"Illumina HiSeq 2500 sequencing; GSM1666830: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007090,\"Illumina HiSeq 2500 sequencing; GSM1666831: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007091,\"Illumina HiSeq 2500 sequencing; GSM1666832: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007092,\"Illumina HiSeq 2500 sequencing; GSM1666833: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\"\nSRR2007093,\"Illumina HiSeq 2500 sequencing; GSM1666834: eIF2A S51A cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\"\nSRR2007094,\"Illumina HiSeq 2500 sequencing; GSM1666835: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007095,\"Illumina HiSeq 2500 sequencing; GSM1666836: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007096,\"Illumina HiSeq 2500 sequencing; GSM1666837: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007097,\"Illumina HiSeq 2500 sequencing; GSM1666838: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007098,\"Illumina HiSeq 2500 sequencing; GSM1666839: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007099,\"Illumina HiSeq 2500 sequencing; GSM1666840: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007100,\"Illumina HiSeq 2500 sequencing; GSM1666841: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007101,\"Illumina HiSeq 2500 sequencing; GSM1666842: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\"\nSRR2007102,\"Illumina HiSeq 2500 sequencing; GSM1666843: eIF2A S51A cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\"\nSRR2007103,\"Illumina HiSeq 2500 sequencing; GSM1666844: eIF2A S51A ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\"\nSRR2007769,\"Illumina HiSeq 2500 sequencing; GSM1674110: WT cytosol ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007770,\"Illumina HiSeq 2500 sequencing; GSM1674111: WT cytosol ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007771,\"Illumina HiSeq 2500 sequencing; GSM1674112: WT ER ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007772,\"Illumina HiSeq 2500 sequencing; GSM1674113: WT ER ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007773,\"Illumina HiSeq 2500 sequencing; GSM1674114: WT cytosol ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007774,\"Illumina HiSeq 2500 sequencing; GSM1674115: WT cytosol ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007775,\"Illumina HiSeq 2500 sequencing; GSM1674116: WT ER ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007776,\"Illumina HiSeq 2500 sequencing; GSM1674117: WT ER ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007777,\"Illumina HiSeq 2500 sequencing; GSM1674118: WT cytosol ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007778,\"Illumina HiSeq 2500 sequencing; GSM1674119: WT cytosol ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007779,\"Illumina HiSeq 2500 sequencing; GSM1674120: WT ER ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007780,\"Illumina HiSeq 2500 sequencing; GSM1674121: WT ER ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007781,\"Illumina HiSeq 2500 sequencing; GSM1674122: WT cytosol ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007782,\"Illumina HiSeq 2500 sequencing; GSM1674123: WT cytosol ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007783,\"Illumina HiSeq 2500 sequencing; GSM1674124: WT ER ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\"\nSRR2007784,\"Illumina HiSeq 2500 sequencing; GSM1674125: WT ER ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\"\nSRR2007785,\"Illumina HiSeq 2500 sequencing; GSM1674126: WT cytosol ribosome profiling, no Tg (rep1); Mus musculus; OTHER\"\nSRR2007786,\"Illumina HiSeq 2500 sequencing; GSM1674127: WT cytosol ribosome profiling, no Tg (rep2); Mus musculus; OTHER\"\nSRR2007787,\"Illumina HiSeq 2500 sequencing; GSM1674128: WT ER ribosome profiling, no Tg (rep1); Mus musculus; OTHER\"\nSRR2007788,\"Illumina HiSeq 2500 sequencing; GSM1674129: WT ER ribosome profiling, no Tg (rep2); Mus musculus; OTHER\"\nSRR2047225,Illumina HiSeq 2000 paired end sequencing; Shield Stage Embryos matched to Ribosome Profiling\nSRR2052911,Illumina HiSeq 2500 sequencing; GSM1704503: 6 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052912,Illumina HiSeq 2500 sequencing; GSM1704504: 6 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052913,Illumina HiSeq 2500 sequencing; GSM1704505: 12 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052914,Illumina HiSeq 2500 sequencing; GSM1704506: 12 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052915,Illumina HiSeq 2500 sequencing; GSM1704507: 24 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052916,Illumina HiSeq 2500 sequencing; GSM1704508: 24 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052917,Illumina HiSeq 2500 sequencing; GSM1704509: 40 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052918,Illumina HiSeq 2500 sequencing; GSM1704510: 40 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052919,Illumina HiSeq 2500 sequencing; GSM1704511: Interferon treatment cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052920,Illumina HiSeq 2500 sequencing; GSM1704512: Interferon treatment ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052921,Illumina HiSeq 2500 sequencing; GSM1704513: Uninfected cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052922,Illumina HiSeq 2500 sequencing; GSM1704514: Uninfected ER ribosome profiling (Rep 1); Homo sapiens; OTHER\nSRR2052923,Illumina HiSeq 2500 sequencing; GSM1704515: 6 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052924,Illumina HiSeq 2500 sequencing; GSM1704516: 6 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052925,Illumina HiSeq 2500 sequencing; GSM1704517: 12 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052926,Illumina HiSeq 2500 sequencing; GSM1704518: 12 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052927,Illumina HiSeq 2500 sequencing; GSM1704519: 24 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052928,Illumina HiSeq 2500 sequencing; GSM1704520: 24 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052929,Illumina HiSeq 2500 sequencing; GSM1704521: 40 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052930,Illumina HiSeq 2500 sequencing; GSM1704522: 40 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052931,Illumina HiSeq 2500 sequencing; GSM1704523: Interferon treatment cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052932,Illumina HiSeq 2500 sequencing; GSM1704524: Interferon treatment ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052933,Illumina HiSeq 2500 sequencing; GSM1704525: Uninfected cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052934,Illumina HiSeq 2500 sequencing; GSM1704526: Uninfected ER ribosome profiling (Rep 2); Homo sapiens; OTHER\nSRR2052935,Illumina HiSeq 2500 sequencing; GSM1704527: 6 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052936,Illumina HiSeq 2500 sequencing; GSM1704528: 6 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052937,Illumina HiSeq 2500 sequencing; GSM1704529: 12 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052938,Illumina HiSeq 2500 sequencing; GSM1704530: 12 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052939,Illumina HiSeq 2500 sequencing; GSM1704531: 24 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052940,Illumina HiSeq 2500 sequencing; GSM1704532: 24 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052941,Illumina HiSeq 2500 sequencing; GSM1704533: 40 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052942,Illumina HiSeq 2500 sequencing; GSM1704534: 40 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052943,Illumina HiSeq 2500 sequencing; GSM1704535: Interferon treatment cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052944,Illumina HiSeq 2500 sequencing; GSM1704536: Interferon treatment ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052945,Illumina HiSeq 2500 sequencing; GSM1704537: Uninfected cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052946,Illumina HiSeq 2500 sequencing; GSM1704538: Uninfected ER ribosome profiling (Rep 3); Homo sapiens; OTHER\nSRR2052947,Illumina HiSeq 2500 sequencing; GSM1704539: 6 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052948,Illumina HiSeq 2500 sequencing; GSM1704540: 6 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052949,Illumina HiSeq 2500 sequencing; GSM1704541: 12 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052950,Illumina HiSeq 2500 sequencing; GSM1704542: 12 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052951,Illumina HiSeq 2500 sequencing; GSM1704543: 24 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052952,Illumina HiSeq 2500 sequencing; GSM1704544: 24 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052953,Illumina HiSeq 2500 sequencing; GSM1704545: 40 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052954,Illumina HiSeq 2500 sequencing; GSM1704546: 40 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052955,Illumina HiSeq 2500 sequencing; GSM1704547: Interferon treatment cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052956,Illumina HiSeq 2500 sequencing; GSM1704548: Interferon treatment ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052957,Illumina HiSeq 2500 sequencing; GSM1704549: Uninfected cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052958,Illumina HiSeq 2500 sequencing; GSM1704550: Uninfected ER ribosome profiling (Rep 4); Homo sapiens; OTHER\nSRR2052983,Illumina HiSeq 2500 sequencing; GSM1704575: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052984,Illumina HiSeq 2500 sequencing; GSM1704576: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052985,Illumina HiSeq 2500 sequencing; GSM1704577: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052986,Illumina HiSeq 2500 sequencing; GSM1704578: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052987,Illumina HiSeq 2500 sequencing; GSM1704579: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052988,Illumina HiSeq 2500 sequencing; GSM1704580: Uninfected Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052989,Illumina HiSeq 2500 sequencing; GSM1704581: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052990,Illumina HiSeq 2500 sequencing; GSM1704582: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052991,Illumina HiSeq 2500 sequencing; GSM1704583: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052992,Illumina HiSeq 2500 sequencing; GSM1704584: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052993,Illumina HiSeq 2500 sequencing; GSM1704585: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052994,Illumina HiSeq 2500 sequencing; GSM1704586: Uninfected Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2052995,Illumina HiSeq 2500 sequencing; GSM1704587: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052996,Illumina HiSeq 2500 sequencing; GSM1704588: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052997,Illumina HiSeq 2500 sequencing; GSM1704589: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052998,Illumina HiSeq 2500 sequencing; GSM1704590: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2052999,Illumina HiSeq 2500 sequencing; GSM1704591: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER\nSRR2053000,Illumina HiSeq 2500 sequencing; GSM1704592: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2053001,Illumina HiSeq 2500 sequencing; GSM1704593: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2053002,Illumina HiSeq 2500 sequencing; GSM1704594: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2053003,Illumina HiSeq 2500 sequencing; GSM1704595: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2053004,Illumina HiSeq 2500 sequencing; GSM1704596: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER\nSRR2057646,Ion Torrent PGM sequencing; GSM1707652: Ribosome profiling no exercise rep1; Mus musculus; RNA-Seq\nSRR2057647,Ion Torrent PGM sequencing; GSM1707653: Ribosome profiling no exercise rep2; Mus musculus; RNA-Seq\nSRR2057648,Ion Torrent PGM sequencing; GSM1707654: Ribosome profiling exercise rep1; Mus musculus; RNA-Seq\nSRR2057649,Ion Torrent PGM sequencing; GSM1707655: Ribosome profiling exercise rep2; Mus musculus; RNA-Seq\nSRR2060674,Illumina HiSeq 2500 sequencing; GSM1709012: ER Ribosome profiling Untreated 1; Mus musculus; OTHER\nSRR2060675,Illumina HiSeq 2500 sequencing; GSM1709013: ER Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER\nSRR2060676,Illumina HiSeq 2500 sequencing; GSM1709014: ER Ribosome profiling 1 h Tg 1; Mus musculus; OTHER\nSRR2060677,Illumina HiSeq 2500 sequencing; GSM1709015: ER Ribosome profiling 2 h Tg 1; Mus musculus; OTHER\nSRR2060678,Illumina HiSeq 2500 sequencing; GSM1709016: ER Ribosome profiling 4 h Tg 1; Mus musculus; OTHER\nSRR2060679,Illumina HiSeq 2500 sequencing; GSM1709017: ER Ribosome profiling Untreated 2; Mus musculus; OTHER\nSRR2060680,Illumina HiSeq 2500 sequencing; GSM1709018: ER Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER\nSRR2060681,Illumina HiSeq 2500 sequencing; GSM1709019: ER Ribosome profiling 1 h Tg 2; Mus musculus; OTHER\nSRR2060682,Illumina HiSeq 2500 sequencing; GSM1709020: ER Ribosome profiling 2 h Tg 2; Mus musculus; OTHER\nSRR2060683,Illumina HiSeq 2500 sequencing; GSM1709021: ER Ribosome profiling 4 h Tg 2; Mus musculus; OTHER\nSRR2060684,Illumina HiSeq 2500 sequencing; GSM1709022: Cytosol Ribosome profiling Untreated 1; Mus musculus; OTHER\nSRR2060685,Illumina HiSeq 2500 sequencing; GSM1709023: Cytosol Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER\nSRR2060686,Illumina HiSeq 2500 sequencing; GSM1709024: Cytosol Ribosome profiling 1 h Tg 1; Mus musculus; OTHER\nSRR2060687,Illumina HiSeq 2500 sequencing; GSM1709025: Cytosol Ribosome profiling 2 h Tg 1; Mus musculus; OTHER\nSRR2060688,Illumina HiSeq 2500 sequencing; GSM1709026: Cytosol Ribosome profiling 4 h Tg 1; Mus musculus; OTHER\nSRR2060689,Illumina HiSeq 2500 sequencing; GSM1709027: Cytosol Ribosome profiling Untreated 2; Mus musculus; OTHER\nSRR2060690,Illumina HiSeq 2500 sequencing; GSM1709028: Cytosol Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER\nSRR2060691,Illumina HiSeq 2500 sequencing; GSM1709029: Cytosol Ribosome profiling 1 h Tg 2; Mus musculus; OTHER\nSRR2060692,Illumina HiSeq 2500 sequencing; GSM1709030: Cytosol Ribosome profiling 2 h Tg 2; Mus musculus; OTHER\nSRR2060693,Illumina HiSeq 2500 sequencing; GSM1709031: Cytosol Ribosome profiling 4 h Tg 2; Mus musculus; OTHER\nSRR2075417,Illumina HiSeq 2000 sequencing; GSM1717890: Ribosome profiling SiControl-RPF; Homo sapiens; OTHER\nSRR2075418,Illumina HiSeq 2000 sequencing; GSM1717891: Ribosome profiling SiControl-input-poly(A); Homo sapiens; OTHER\nSRR2075419,Illumina HiSeq 2000 sequencing; GSM1717892: Ribosome profiling SiMETTL3-RPF; Homo sapiens; OTHER\nSRR2075420,Illumina HiSeq 2000 sequencing; GSM1717893: Ribosome profiling SiMETTL3-input-poly(A); Homo sapiens; OTHER\nSRR2096964,Illumina HiSeq 2500 sequencing; GSM1819217: Rluc control ribosome profiling rep1; Homo sapiens; OTHER\nSRR2096965,Illumina HiSeq 2500 sequencing; GSM1819218: DDX3 WT ribosome profiling rep1; Homo sapiens; OTHER\nSRR2096966,Illumina HiSeq 2500 sequencing; GSM1819219: DDX3 R534H ribosome profiling rep1; Homo sapiens; OTHER\nSRR2096967,Illumina HiSeq 2500 sequencing; GSM1819220: Rluc control ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER\nSRR2096968,Illumina HiSeq 2500 sequencing; GSM1819221: DDX3 WT ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER\nSRR2096969,Illumina HiSeq 2500 sequencing; GSM1819222: DDX3 R534H ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER\nSRR2096970,Illumina HiSeq 2500 sequencing; GSM1819223: Rluc control ribosome profiling rep2; Homo sapiens; OTHER\nSRR2096971,Illumina HiSeq 2500 sequencing; GSM1819224: DDX3 WT ribosome profiling rep2; Homo sapiens; OTHER\nSRR2096972,Illumina HiSeq 2500 sequencing; GSM1819225: DDX3 R534H ribosome profiling rep2; Homo sapiens; OTHER\nSRR2096973,Illumina HiSeq 2500 sequencing; GSM1819226: Rluc control ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER\nSRR2096974,Illumina HiSeq 2500 sequencing; GSM1819227: DDX3 WT ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER\nSRR2096975,Illumina HiSeq 2500 sequencing; GSM1819228: DDX3 R534H ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER\nSRR2433794,Illumina HiSeq 2000 sequencing; GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq\nSRR2732970,NextSeq 500 sequencing; Ribosome profiling of lactimidomycin treated Jurkat cells\nSRR2733100,NextSeq 500 sequencing; Ribosome profiling of cycloheximide treated Jurkat cells\nSRR3147100,Illumina HiSeq 2000 sequencing; GSM2055244: ribosome profiling 37°C in WT; Escherichia coli; OTHER\nSRR3208296,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells\nSRR3208406,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells\nSRR3208450,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with WT 18S rRNA\nSRR3208452,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with mutant 18S rRNA\nSRR3286543,Illumina HiSeq 2500 sequencing; GSM2097522: HBE cells ribosome profiling; Homo sapiens; RNA-Seq\nSRR3286544,Illumina HiSeq 2500 sequencing; GSM2097523: A549 cells ribosome profiling; Homo sapiens; RNA-Seq\nSRR3286545,Illumina HiSeq 2500 sequencing; GSM2097524: H1299 cells ribosome profiling; Homo sapiens; RNA-Seq\nSRR3306583,Illumina HiSeq 2000 sequencing; GSM2100596: S phase ribosome profiling replicate 1; Homo sapiens; OTHER\nSRR3306584,Illumina HiSeq 2000 sequencing; GSM2100597: S phase ribosome profiling replicate 2; Homo sapiens; OTHER\nSRR3306585,Illumina HiSeq 2000 sequencing; GSM2100598: M phase ribosome profiling replicate 1; Homo sapiens; OTHER\nSRR3306586,Illumina HiSeq 2000 sequencing; GSM2100599: M phase ribosome profiling replicate 2; Homo sapiens; OTHER\nSRR3306587,Illumina HiSeq 2000 sequencing; GSM2100600: M phase ribosome profiling synchronized by shake off; Homo sapiens; OTHER\nSRR3306588,Illumina HiSeq 2000 sequencing; GSM2100601: Asynchronous cell ribosome profiling 1; Homo sapiens; OTHER\nSRR3306589,Illumina HiSeq 2000 sequencing; GSM2100602: Asynchronous cell ribosome profiling 2; Homo sapiens; OTHER\nSRR3392126,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells\nSRR3392899,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Control for Methionine Starvation)\nSRR3398188,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Methionine Starvation)\nSRR4293693,NextSeq 500 sequencing; GSM2327825: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin; Homo sapiens; OTHER\nSRR4293694,NextSeq 500 sequencing; GSM2327826: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide; Homo sapiens; OTHER\nSRR4293695,NextSeq 500 sequencing; GSM2327827: Ribosome profiling of control HCT116 cells treated with lactimidomycin; Homo sapiens; OTHER\nSRR4293696,NextSeq 500 sequencing; GSM2327828: Ribosome profiling of control HCT116 cells treated with cycloheximide; Homo sapiens; OTHER\nSRR4424237,Illumina HiSeq 2000 sequencing; GSM2346474: Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin; Arabidopsis thaliana; OTHER\nSRR4424238,Illumina HiSeq 2000 sequencing; GSM2346475: Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide; Arabidopsis thaliana; OTHER\nSRR458756,Illumina Genome Analyzer II sequencing; GSM910953: A3-1 Ribosome profiling - siLuc; Mus musculus; OTHER\nSRR458757,Illumina Genome Analyzer II sequencing; GSM910954: A3-1 Ribosome profiling - siLin28a; Mus musculus; OTHER\nSRR5026356,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026359,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026589,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026592,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026603,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026637,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5090708,NextSeq 500 sequencing; GSM2420418: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq\nSRR5090709,NextSeq 500 sequencing; GSM2420419: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq\nSRR5099275,Illumina HiSeq 4000 sequencing; GSM2424851: Ribosome profiling-siControl-RPF; Homo sapiens; OTHER\nSRR5099276,Illumina HiSeq 4000 sequencing; GSM2424852: Ribosome profiling-siControl-input; Homo sapiens; OTHER\nSRR5099277,Illumina HiSeq 4000 sequencing; GSM2424853: Ribosome profiling-rep1-siYTHDF3-RPF; Homo sapiens; OTHER\nSRR5099278,Illumina HiSeq 4000 sequencing; GSM2424854: Ribosome profiling-rep1-siYTHDF3-input; Homo sapiens; OTHER\nSRR5099279,Illumina HiSeq 4000 sequencing; GSM2424855: Ribosome profiling-rep2-siYTHDF3-RPF; Homo sapiens; OTHER\nSRR5099280,Illumina HiSeq 4000 sequencing; GSM2424856: Ribosome profiling-rep2-siYTHDF3-input; Homo sapiens; OTHER\nSRR5186136,Illumina HiSeq 4000 sequencing; GSM2462933: ribosome profiling 37°C in WT with control plasmid; Escherichia coli; OTHER\nSRR5186137,Illumina HiSeq 4000 sequencing; GSM2462934: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA; Escherichia coli; OTHER\nSRR5186138,Illumina HiSeq 4000 sequencing; GSM2462935: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG; Escherichia coli; OTHER\nSRR5223162,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with harringtonine\nSRR5223163,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with cycloheximide\nSRR5239050,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239051,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239052,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239053,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239054,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239055,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER\nSRR5239056,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239057,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239058,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239059,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239060,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239061,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER\nSRR5239062,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239063,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239064,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239065,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239066,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239067,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER\nSRR5239068,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239069,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239070,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239071,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239072,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239073,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER\nSRR5239074,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239075,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239076,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239077,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239078,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239079,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER\nSRR5239080,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5239081,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5239082,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5239083,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5239084,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5239085,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER\nSRR5356885,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes\nSRR5356887,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes\nSRR5356889,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes\nSRR5356891,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol\nSRR5356893,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol\nSRR5356895,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol\nSRR5356897,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes\nSRR5356899,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes\nSRR5356901,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes\nSRR5356903,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol\nSRR5356905,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol\nSRR5356907,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol\nSRR5483532,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant\nSRR5483533,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant rep2\nSRR5483534,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep1\nSRR5483539,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep2\nSRR5667267,NextSeq 500 sequencing; GSM2664256: wild type ribosome profiling replicate 1; Drosophila melanogaster; OTHER\nSRR5667268,NextSeq 500 sequencing; GSM2664257: wild type ribosome profiling replicate 2; Drosophila melanogaster; OTHER\nSRR5667269,NextSeq 500 sequencing; GSM2664258: wild type ribosome profiling replicate 3; Drosophila melanogaster; OTHER\nSRR5667276,NextSeq 500 sequencing; GSM2664265: GluRIIA ribosome profiling replicate 1; Drosophila melanogaster; OTHER\nSRR5667277,NextSeq 500 sequencing; GSM2664266: GluRIIA ribosome profiling replicate 2; Drosophila melanogaster; OTHER\nSRR5667278,NextSeq 500 sequencing; GSM2664267: GluRIIA ribosome profiling replicate 3; Drosophila melanogaster; OTHER\nSRR5667282,NextSeq 500 sequencing; GSM2664271: Tor-OE ribosome profiling replicate 1; Drosophila melanogaster; OTHER\nSRR5667283,NextSeq 500 sequencing; GSM2664272: Tor-OE ribosome profiling replicate 2; Drosophila melanogaster; OTHER\nSRR5667284,NextSeq 500 sequencing; GSM2664273: Tor-OE ribosome profiling replicate 3; Drosophila melanogaster; OTHER\nSRR5735992,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\"\nSRR5735993,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\"\nSRR5735994,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\"\nSRR5735995,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\"\nSRR5735996,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\"\nSRR5735997,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\"\nSRR5735998,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\"\nSRR5735999,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\"\nSRR5736000,\"Illumina HiSeq 2000 sequencing; GSM2678053: WT Ribosome Profiling, rep1; Mus musculus; RNA-Seq\"\nSRR5736001,\"Illumina HiSeq 2000 sequencing; GSM2678054: WT Ribosome Profiling, rep2; Mus musculus; RNA-Seq\"\nSRR5736002,\"Illumina HiSeq 2000 sequencing; GSM2678055: KO Ribosome Profiling, rep1; Mus musculus; RNA-Seq\"\nSRR5736003,\"Illumina HiSeq 2000 sequencing; GSM2678056: KO Ribosome Profiling, rep2; Mus musculus; RNA-Seq\"\nSRR5799562,Illumina HiSeq 4000 sequencing; GSM2692350: ribosome profiling 0h; Mus musculus; OTHER\nSRR5799563,Illumina HiSeq 4000 sequencing; GSM2692351: ribosome profiling 12h; Mus musculus; OTHER\nSRR5952328,Illumina HiSeq 2000 sequencing; GSM2747838: Ribosome Profiling H19:H391; Mus musculus; OTHER\nSRR5952329,Illumina HiSeq 2000 sequencing; GSM2747839: Ribosome Profiling SECIS1 deletion2; Mus musculus; OTHER\nSRR5952330,Illumina HiSeq 2000 sequencing; GSM2747840: Ribosome Profiling SECIS1 deletion3; Mus musculus; OTHER\nSRR5952331,Illumina HiSeq 2000 sequencing; GSM2747841: Ribosome Profiling SECIS1 WT1; Mus musculus; OTHER\nSRR5952332,Illumina HiSeq 2000 sequencing; GSM2747842: Ribosome Profiling SECIS1 WT2; Mus musculus; OTHER\nSRR5952333,Illumina HiSeq 2000 sequencing; GSM2747843: Ribosome Profiling SECIS1 WT3; Mus musculus; OTHER\nSRR5952340,Illumina HiSeq 2000 sequencing; GSM2747850: Ribosome Profiling SECIS2 WT1; Mus musculus; OTHER\nSRR5952341,Illumina HiSeq 2000 sequencing; GSM2747851: Ribosome Profiling SECIS2 WT2; Mus musculus; OTHER\nSRR5952342,Illumina HiSeq 2000 sequencing; GSM2747852: Ribosome Profiling SECIS2 WT3; Mus musculus; OTHER\nSRR5952343,Illumina HiSeq 2000 sequencing; GSM2747853: Ribosome Profiling SECIS2 deletion1; Mus musculus; OTHER\nSRR5952344,Illumina HiSeq 2000 sequencing; GSM2747854: Ribosome Profiling SECIS2 deletion2; Mus musculus; OTHER\nSRR5952345,Illumina HiSeq 2000 sequencing; GSM2747855: Ribosome Profiling SECIS2 deletion3; Mus musculus; OTHER\nSRR6001737,Illumina Genome Analyzer II sequencing; GSM2770989: Ribosome profiling at 37°C in WT cells_1; Escherichia coli; RNA-Seq\nSRR6001738,Illumina Genome Analyzer II sequencing; GSM2770990: Ribosome profiling 10 min after shift to 10°C in WT cells_1; Escherichia coli; RNA-Seq\nSRR6001739,Illumina Genome Analyzer II sequencing; GSM2770991: Ribosome profiling 30 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001740,Illumina Genome Analyzer II sequencing; GSM2770992: Ribosome profiling 2 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001741,Illumina Genome Analyzer II sequencing; GSM2770993: Ribosome profiling 3 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001742,Illumina Genome Analyzer II sequencing; GSM2770994: Ribosome profiling 4 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001743,Illumina Genome Analyzer II sequencing; GSM2770995: Ribosome profiling 6 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001744,Illumina HiSeq 2000 sequencing; GSM2770996: Ribosome profiling 5 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001745,Illumina HiSeq 2000 sequencing; GSM2770997: Ribosome profiling 10 min after shift to 10°C in WT cells_2; Escherichia coli; RNA-Seq\nSRR6001746,Illumina HiSeq 2000 sequencing; GSM2770998: Ribosome profiling 15 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001747,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001748,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq\nSRR6001749,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq\nSRR6001750,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq\nSRR6001751,Illumina HiSeq 2000 sequencing; GSM2771001: Ribosome profiling at 37°C in WT cells_2; Escherichia coli; RNA-Seq\nSRR6001752,Illumina HiSeq 2000 sequencing; GSM2771002: Ribosome profiling at 37°C in ∆cspABCEG cells; Escherichia coli; RNA-Seq\nSRR618770,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\"\nSRR618771,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\"\nSRR618772,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\"\nSRR618773,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\"\nSRR618774,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with cycloheximide\nSRR618775,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with lactimidomycin\nSRR619082,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 1\nSRR619083,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 2\nSRR619084,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1\nSRR619085,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2\nSRR619086,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC only\nSRR619087,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with MG132 only\nSRR619088,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO\nSRR619089,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO\nSRR619090,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER\nSRR619091,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER\nSRR619092,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES\nSRR619093,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES\nSRR619094,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA\nSRR619095,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA\nSRR619096,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells no treatment\nSRR619097,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog\nSRR619098,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells NOT expressing K71M\nSRR619099,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1\nSRR619100,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2\nSRR6252013,NextSeq 500 sequencing; GSM2838830: Dengue 1 ribosome profiling mRNA REP1; Homo sapiens; OTHER\nSRR6252014,NextSeq 500 sequencing; GSM2838831: Dengue 1 ribosome profiling footprint REP1; Homo sapiens; OTHER\nSRR6252015,NextSeq 500 sequencing; GSM2838832: Dengue 1 ribosome profiling mRNA REP2; Homo sapiens; OTHER\nSRR6252016,NextSeq 500 sequencing; GSM2838833: Dengue 1 ribosome profiling footprint REP2; Homo sapiens; OTHER\nSRR6286686,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6286687,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6286690,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6286691,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6286692,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6286693,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii\nSRR6315847,Illumina HiSeq 2000 sequencing; Hip1 total hippocampus Ribosome profiling\nSRR6395814,Illumina HiSeq 2500 sequencing; GSM2895436: KO-ribosome profiling; Mus musculus; OTHER\nSRR6395815,Illumina HiSeq 2500 sequencing; GSM2895437: KO-ribosome profiling input; Mus musculus; OTHER\nSRR6395816,Illumina HiSeq 2500 sequencing; GSM2895438: WT-ribosome profiling; Mus musculus; OTHER\nSRR6395817,Illumina HiSeq 2500 sequencing; GSM2895439: WT-ribosome profiling input; Mus musculus; OTHER\nSRR7123172,Illumina HiSeq 2500 sequencing; GSM3131863: WT-ribosome profiling replicate 2; Mus musculus; OTHER\nSRR7123173,Illumina HiSeq 3000 sequencing; GSM3131864: WT-ribosome profiling input replicate 2; Mus musculus; OTHER\nSRR7123174,Illumina HiSeq 2500 sequencing; GSM3131865: KO-ribosome profiling replicate 2; Mus musculus; OTHER\nSRR7123175,Illumina HiSeq 3000 sequencing; GSM3131866: KO-ribosome profiling input replicate 2; Mus musculus; OTHER\nSRR7132277,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #4\nSRR7132286,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #2\nSRR7132287,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #3\nSRR7132288,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #3\nSRR7132289,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #4\nSRR7132290,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:control replicate #1\nSRR7132291,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #2\nSRR7132292,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #3\nSRR7132293,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #1\nSRR7132294,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1 replicate #1\nSRR7132295,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #2\nSRR7241910,Illumina HiSeq 2500 sequencing; GSM3168387: MDA-MB-231 ribosome profiling; Homo sapiens; RNA-Seq\nSRR7241911,Illumina HiSeq 2500 sequencing; GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq\nSRR7241912,Illumina HiSeq 2500 sequencing; GSM3168389: HeLa ribosome profiling 1; Homo sapiens; RNA-Seq\nSRR7241913,Illumina HiSeq 2500 sequencing; GSM3168390: HeLa ribosome profiling 2; Homo sapiens; RNA-Seq\nSRR7517655,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells\nSRR7517656,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells\nSRR7517657,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells\nSRR7517658,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells\nSRR8040412,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type plus radicicol\nSRR8040414,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type\nSRR8040416,NextSeq 500 sequencing; Ribosome profiling of L. donovani HSP90rr plus radicicol\nSRR8258332,Illumina MiSeq sequencing; GSM3048762: ΔrrnIcomp - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq\nSRR8258333,Illumina MiSeq sequencing; GSM3048763: ΔrrnI - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq\nSRR8258336,Illumina MiSeq sequencing; GSM3048766: ΔrrnIcomp - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq\nSRR8258337,Illumina MiSeq sequencing; GSM3048767: ΔrrnI - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq\nSRR8445000,\"Illumina HiSeq 4000 sequencing; GSM3563711: HEK 293 cells, ribosome profiling, ctrl, Replicate 1; Homo sapiens; OTHER\"\nSRR8445001,\"Illumina HiSeq 4000 sequencing; GSM3563712: HEK 293 cells, ribosome profiling, ctrl, Replicate 2; Homo sapiens; OTHER\"\nSRR8445002,\"Illumina HiSeq 4000 sequencing; GSM3563713: HEK 293 cells, ribosome profiling, siDDX3, Replicate 1; Homo sapiens; OTHER\"\nSRR8445003,\"Illumina HiSeq 4000 sequencing; GSM3563714: HEK 293 cells, ribosome profiling, siDDX3, Replicate 2; Homo sapiens; OTHER\"\nSRR870722,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870723,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870724,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870725,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870726,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870727,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870728,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870729,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870730,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870731,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870732,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870733,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870734,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870735,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870736,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER\nSRR870737,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870738,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870739,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870740,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870741,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870742,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870743,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870744,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870745,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR870746,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER\nSRR8732200,Illumina HiSeq 2500 sequencing; GSM3671680: ribosome profiling wt_1; Homo sapiens; RNA-Seq\nSRR8732201,Illumina HiSeq 2500 sequencing; GSM3671681: ribosome profiling wt_2; Homo sapiens; RNA-Seq\nSRR8732202,Illumina HiSeq 2500 sequencing; GSM3671682: ribosome profiling wt_3; Homo sapiens; RNA-Seq\nSRR8732203,Illumina HiSeq 2500 sequencing; GSM3671683: ribosome profiling APP_1; Homo sapiens; RNA-Seq\nSRR8732204,Illumina HiSeq 2500 sequencing; GSM3671684: ribosome profiling APP_2; Homo sapiens; RNA-Seq\nSRR8732205,Illumina HiSeq 2500 sequencing; GSM3671685: ribosome profiling APP_3; Homo sapiens; RNA-Seq\nSRR8732206,Illumina HiSeq 2500 sequencing; GSM3671686: ribosome profiling PSEN_1; Homo sapiens; RNA-Seq\nSRR8732207,Illumina HiSeq 2500 sequencing; GSM3671687: ribosome profiling PSEN_2; Homo sapiens; RNA-Seq\nSRR8732208,Illumina HiSeq 2500 sequencing; GSM3671688: ribosome profiling PSEN_3; Homo sapiens; RNA-Seq\nSRR8732209,Illumina HiSeq 2500 sequencing; GSM3671689: ribosome profiling APP/PSEN1_1; Homo sapiens; RNA-Seq\nSRR8732210,Illumina HiSeq 2500 sequencing; GSM3671690: ribosome profiling APP/PSEN1_2; Homo sapiens; RNA-Seq\nSRR8732211,Illumina HiSeq 2500 sequencing; GSM3671691: ribosome profiling APP/PSEN1_3; Homo sapiens; RNA-Seq\nSRR9113062,\"Illumina HiSeq 4000 sequencing; GSM3791723: iPSC ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\"\nSRR9113063,\"Illumina HiSeq 4000 sequencing; GSM3791724: Cardiomyocyte ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\"\nSRR9113064,\"Illumina HiSeq 4000 sequencing; GSM3791725: iPSC ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\"\nSRR9113065,\"Illumina HiSeq 4000 sequencing; GSM3791726: iPSC ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\"\nSRR9113066,\"Illumina HiSeq 4000 sequencing; GSM3791727: iPSC ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\"\nSRR9113067,\"Illumina HiSeq 4000 sequencing; GSM3791728: Cardiomyocyte ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\"\nSRR9113068,\"Illumina HiSeq 4000 sequencing; GSM3791729: Cardiomyocyte ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\"\nSRR9113069,\"Illumina HiSeq 4000 sequencing; GSM3791730: Cardiomyocyte ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\"\nSRR9265420,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C\nSRR9265421,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C\nSRR9265422,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C\nSRR9265423,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C\nSRR9265424,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C\nSRR9265425,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C\nSRR9265426,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample\nSRR9265427,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample\nSRR9265429,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample\nSRR9265438,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C\nSRR9265440,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C\nSRR944653,Illumina HiSeq 2000 sequencing; GSM1197612: Ribosome profiling rep1-SiControl-RPF C1; Homo sapiens; OTHER\nSRR944654,Illumina HiSeq 2000 sequencing; GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq\nSRR944655,Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER\n"
  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_1.json",
    "content": "[{\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264364\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"sample_accession\": \"SAMEA3708907\", \"sample_title\": \"Sample 1\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190989\", \"read_count\": \"38883498\", \"base_count\": \"1161289538\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264365\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"sample_accession\": \"SAMEA3708908\", \"sample_title\": \"Sample 10\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190990\", \"read_count\": \"55544297\", \"base_count\": \"1779600908\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264366\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"sample_accession\": \"SAMEA3708909\", \"sample_title\": \"Sample 11\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190991\", \"read_count\": \"54474851\", \"base_count\": \"1713994365\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264367\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"sample_accession\": \"SAMEA3708910\", \"sample_title\": \"Sample 12\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190992\", \"read_count\": \"78497711\", \"base_count\": \"2489092061\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264368\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"RANDOM\", \"sample_accession\": \"SAMEA3708911\", \"sample_title\": \"Sample 13\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190993\", \"read_count\": \"84955423\", \"base_count\": \"2627276298\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264369\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; 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  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_2.csv",
    "content": "study_accession,experiment_accession,experiment_title,description,tax_id,scientific_name,library_strategy,library_source,library_selection,sample_accession,sample_title,instrument_model,run_accession,read_count,base_count\nPRJEB12126,ERX1264364,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708907,Sample 1,Illumina HiSeq 2000,ERR1190989,38883498,1161289538\nPRJEB12126,ERX1264365,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708908,Sample 10,Illumina HiSeq 2000,ERR1190990,55544297,1779600908\nPRJEB12126,ERX1264366,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708909,Sample 11,Illumina HiSeq 2000,ERR1190991,54474851,1713994365\nPRJEB12126,ERX1264367,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708910,Sample 12,Illumina HiSeq 2000,ERR1190992,78497711,2489092061\nPRJEB12126,ERX1264368,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708911,Sample 13,Illumina HiSeq 2000,ERR1190993,84955423,2627276298\nPRJEB12126,ERX1264369,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708912,Sample 14,Illumina HiSeq 2000,ERR1190994,75097651,2293097872\nPRJEB12126,ERX1264370,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708913,Sample 15,Illumina HiSeq 2000,ERR1190995,67177553,2060926619\nPRJEB12126,ERX1264371,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708914,Sample 16,Illumina HiSeq 2000,ERR1190996,62940694,2061757111\nPRJEB12126,ERX1264372,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708915,Sample 17,Illumina HiSeq 2000,ERR1190997,80591061,2475034240\nPRJEB12126,ERX1264373,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708916,Sample 18,Illumina HiSeq 2000,ERR1190998,68575621,2149386138\nPRJEB12126,ERX1264374,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708917,Sample 19,Illumina HiSeq 2000,ERR1190999,59543450,1840946911\nPRJEB12126,ERX1264375,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708918,Sample 2,Illumina HiSeq 2000,ERR1191000,48420348,1429402558\nPRJEB12126,ERX1264376,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708919,Sample 20,Illumina HiSeq 2000,ERR1191001,39413642,1197490271\nPRJEB12126,ERX1264377,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708920,Sample 21,Illumina HiSeq 2000,ERR1191002,43109202,1310217152\nPRJEB12126,ERX1264378,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708921,Sample 22,Illumina HiSeq 2000,ERR1191003,48048678,1464094378\nPRJEB12126,ERX1264379,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708922,Sample 23,Illumina HiSeq 2000,ERR1191004,55458988,1762359654\nPRJEB12126,ERX1264380,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708923,Sample 24,Illumina HiSeq 2000,ERR1191005,47426381,1463185679\nPRJEB12126,ERX1264381,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708924,Sample 25,Illumina HiSeq 2000,ERR1191006,53368431,1671809961\nPRJEB12126,ERX1264382,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708925,Sample 26,Illumina HiSeq 2000,ERR1191007,63008359,1879252598\nPRJEB12126,ERX1264383,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708926,Sample 27,Illumina HiSeq 2000,ERR1191008,54398154,1665685103\nPRJEB12126,ERX1264384,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708927,Sample 28,Illumina HiSeq 2000,ERR1191009,60588893,1898719877\nPRJEB12126,ERX1264385,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708928,Sample 29,Illumina HiSeq 2000,ERR1191010,51322850,1636915300\nPRJEB12126,ERX1264386,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708929,Sample 3,Illumina HiSeq 2000,ERR1191011,51075405,1550469279\nPRJEB12126,ERX1264387,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708930,Sample 30,Illumina HiSeq 2000,ERR1191012,68573681,2176015649\nPRJEB12126,ERX1264388,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708931,Sample 31,Illumina HiSeq 2000,ERR1191013,67660607,2053109515\nPRJEB12126,ERX1264389,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708932,Sample 32,Illumina HiSeq 2000,ERR1191014,79400383,2502665973\nPRJEB12126,ERX1264390,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708933,Sample 33,Illumina HiSeq 2000,ERR1191015,65832767,2077595830\nPRJEB12126,ERX1264391,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708934,Sample 34,Illumina HiSeq 2000,ERR1191016,65880576,2068785301\nPRJEB12126,ERX1264392,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708935,Sample 35,Illumina HiSeq 2000,ERR1191017,45934156,1461586536\nPRJEB12126,ERX1264393,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708936,Sample 36,Illumina HiSeq 2000,ERR1191018,62115857,1934185771\nPRJEB12126,ERX1264394,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708937,Sample 37,Illumina HiSeq 2000,ERR1191019,56038006,1696854260\nPRJEB12126,ERX1264395,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708938,Sample 38,Illumina HiSeq 2000,ERR1191020,50038369,1585387757\nPRJEB12126,ERX1264396,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708939,Sample 39,Illumina HiSeq 2000,ERR1191021,82282313,2638880669\nPRJEB12126,ERX1264397,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708940,Sample 4,Illumina HiSeq 2000,ERR1191022,63170089,2044068461\nPRJEB12126,ERX1264398,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708941,Sample 40,Illumina HiSeq 2000,ERR1191023,76077975,3120456466\nPRJEB12126,ERX1264399,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708942,Sample 5,Illumina HiSeq 2000,ERR1191024,38540171,1192143682\nPRJEB12126,ERX1264400,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708943,Sample 6,Illumina HiSeq 2000,ERR1191025,27122370,839903135\nPRJEB12126,ERX1264401,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708944,Sample 7,Illumina HiSeq 2000,ERR1191026,52888637,1629947931\nPRJEB12126,ERX1264402,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708945,Sample 8,Illumina HiSeq 2000,ERR1191027,47240129,1457468497\nPRJEB12126,ERX1264403,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708946,Sample 9,Illumina HiSeq 2000,ERR1191028,58914298,1823035475\nPRJEB17636,ERX1789731,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534046,Sample 1,Illumina HiSeq 2000,ERR1719518,41599973,1375854749\nPRJEB17636,ERX1789732,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534047,Sample 10,NextSeq 500,ERR1719519,23069695,740677911\nPRJEB17636,ERX1789733,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534048,Sample 11,NextSeq 500,ERR1719520,29010875,922672397\nPRJEB17636,ERX1789734,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534049,Sample 12,NextSeq 500,ERR1719521,30202884,976358769\nPRJEB17636,ERX1789735,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534050,Sample 13,NextSeq 500,ERR1719522,19815295,629646715\nPRJEB17636,ERX1789736,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534051,Sample 14,NextSeq 500,ERR1719523,37199064,1177627544\nPRJEB17636,ERX1789737,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534052,Sample 15,NextSeq 500,ERR1719524,26965806,866250047\nPRJEB17636,ERX1789738,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534053,Sample 16,NextSeq 500,ERR1719525,31150940,974286119\nPRJEB17636,ERX1789739,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534054,Sample 17,NextSeq 500,ERR1719526,31786494,975436074\nPRJEB17636,ERX1789740,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534055,Sample 18,NextSeq 500,ERR1719527,31291402,1004598571\nPRJEB17636,ERX1789741,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534056,Sample 19,NextSeq 500,ERR1719528,28466729,885092147\nPRJEB17636,ERX1789742,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534057,Sample 2,Illumina HiSeq 2000,ERR1719529,43631646,1380630106\nPRJEB17636,ERX1789743,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534058,Sample 20,NextSeq 500,ERR1719530,33738268,1059476203\nPRJEB17636,ERX1789744,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534059,Sample 3,Illumina HiSeq 2000,ERR1719531,40726173,1283483477\nPRJEB17636,ERX1789745,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534060,Sample 4,Illumina HiSeq 2000,ERR1719532,39825021,1261053649\nPRJEB17636,ERX1789746,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534061,Sample 5,Illumina HiSeq 2000,ERR1719533,50368881,1646355648\nPRJEB17636,ERX1789747,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534062,Sample 6,Illumina HiSeq 2000,ERR1719534,47535077,1522019700\nPRJEB17636,ERX1789748,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534063,Sample 7,Illumina HiSeq 2000,ERR1719535,49746314,1603492330\nPRJEB17636,ERX1789749,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534064,Sample 8,Illumina HiSeq 2000,ERR1719536,48745145,1548939461\nPRJEB17636,ERX1789750,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534065,Sample 9,NextSeq 500,ERR1719537,24213954,761912205\nPRJEB19014,ERX1861079,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50540668,hfq1,Illumina HiSeq 2000,ERR1797529,37747215,1025325032\nPRJEB19014,ERX1861080,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50541418,hfq2,Illumina HiSeq 2000,ERR1797530,27730412,742041285\nPRJEB19014,ERX1861081,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50542168,wt1,Illumina HiSeq 2000,ERR1797531,13719271,374602064\nPRJEB19014,ERX1861082,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50542918,wt2,Illumina HiSeq 2000,ERR1797532,24135343,663303116\nPRJEB19102,ERX1865801,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52778668,Sample 1,NextSeq 500,ERR1802070,32991341,1030531389\nPRJEB19102,ERX1865802,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52779418,Sample 10,NextSeq 500,ERR1802071,32655516,1036495741\nPRJEB19102,ERX1865803,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52780168,Sample 2,NextSeq 500,ERR1802072,37859333,1233151851\nPRJEB19102,ERX1865804,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52780918,Sample 3,NextSeq 500,ERR1802073,23378265,748417766\nPRJEB19102,ERX1865805,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52781668,Sample 4,NextSeq 500,ERR1802074,19273387,614792063\nPRJEB19102,ERX1865806,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52782418,Sample 5,NextSeq 500,ERR1802075,30830839,1009143241\nPRJEB19102,ERX1865807,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52783168,Sample 6,NextSeq 500,ERR1802076,26929369,882916179\nPRJEB19102,ERX1865808,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52783918,Sample 7,NextSeq 500,ERR1802077,12627212,397075719\nPRJEB19102,ERX1865809,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52784668,Sample 8,NextSeq 500,ERR1802078,17629538,542405945\nPRJEB19102,ERX1865810,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52785418,Sample 9,NextSeq 500,ERR1802079,40647908,1316636689\nPRJEB19678,ERX1918552,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100849168,Sample 1,NextSeq 500,ERR1856693,111880423,3793356586\nPRJEB19678,ERX1918553,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100849918,Sample 2,NextSeq 500,ERR1856694,58039284,1693191518\nPRJEB19678,ERX1918554,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100850668,Sample 3,NextSeq 500,ERR1856695,54983210,1222852079\nPRJEB21099,ERX2054828,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106710,wt.N.CHX.mrna.1,Illumina HiSeq 2000,ERR1994959,26425976,1321298800\nPRJEB21099,ERX2054829,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106711,wt.N.CHX.mrna.3,Illumina HiSeq 2000,ERR1994960,36240950,1812047500\nPRJEB21099,ERX2054830,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106712,wt.N.CHX.ribo.1,NextSeq 550,ERR1994961,63059496,3152974800\nPRJEB21099,ERX2054831,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106713,wt.N.CHX.ribo.3,Illumina HiSeq 2000,ERR1994962,26742065,1337103250\nPRJEB21099,ERX2054832,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106714,wt.N.noCHX.mrna.1,Illumina HiSeq 2000,ERR1994963,16170457,808522850\nPRJEB21099,ERX2054833,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106715,wt.N.noCHX.mrna.3,Illumina HiSeq 2000,ERR1994964,23972947,1198647350\nPRJEB21099,ERX2054834,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106716,wt.N.noCHX.ribo.1,Illumina HiSeq 2000,ERR1994965,40531552,2026577600\nPRJEB21099,ERX2054835,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106717,wt.N.noCHX.ribo.3,Illumina HiSeq 2000,ERR1994966,32968604,1648430200\nPRJEB21099,ERX2054836,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106718,wt.noN.CHX.mrna.1,Illumina HiSeq 2000,ERR1994967,21546857,1077342850\nPRJEB21099,ERX2054837,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106719,wt.noN.CHX.mrna.3,Illumina HiSeq 2000,ERR1994968,33734733,1686736650\nPRJEB21099,ERX2054838,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106720,wt.noN.CHX.ribo.1,NextSeq 550,ERR1994969,83235717,4161785850\nPRJEB21099,ERX2054839,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106721,wt.noN.CHX.ribo.3,Illumina HiSeq 2000,ERR1994970,31175890,1558794500\nPRJEB21099,ERX2054840,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106722,wt.noN.noCHX.mrna.1,Illumina HiSeq 2000,ERR1994971,18195992,909799600\nPRJEB21099,ERX2054841,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106723,wt.noN.noCHX.mrna.3,Illumina HiSeq 2000,ERR1994972,23231253,1161562650\nPRJEB21099,ERX2054842,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106724,wt.noN.noCHX.ribo.1,Illumina HiSeq 2000,ERR1994973,40848270,2042413500\nPRJEB21099,ERX2054843,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106725,wt.noN.noCHX.ribo.3,Illumina HiSeq 2000,ERR1994974,31871091,1593554550\nPRJEB21224,ERX2063387,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118808,gcn2.AT.mrna.3,NextSeq 550,ERR2003518,37068610,2804773487\nPRJEB21224,ERX2063388,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118809,gcn2.AT.mrna.4,NextSeq 550,ERR2003519,32243483,2439588430\nPRJEB21224,ERX2063389,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118810,gcn2.AT.ribo.3,NextSeq 550,ERR2003520,31434722,1571736100\nPRJEB21224,ERX2063390,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118811,gcn2.AT.ribo.4,NextSeq 550,ERR2003521,56596125,2829806250\nPRJEB21224,ERX2063391,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118812,gcn2.noAT.mrna.3,NextSeq 550,ERR2003522,16204245,1226035737\nPRJEB21224,ERX2063392,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118813,gcn2.noAT.mrna.4,NextSeq 550,ERR2003523,33797257,2557225027\nPRJEB21224,ERX2063393,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118814,gcn2.noAT.ribo.3,NextSeq 550,ERR2003524,31214960,1560748000\nPRJEB21224,ERX2063394,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118815,gcn2.noAT.ribo.4,NextSeq 550,ERR2003525,106865118,5343255900\nPRJEB21224,ERX2063395,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118816,wt.AT.CHX.mrna.11,NextSeq 550,ERR2003526,52513972,2625698600\nPRJEB21224,ERX2063396,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118817,wt.AT.CHX.mrna.13,NextSeq 550,ERR2003527,35611500,1780575000\nPRJEB21224,ERX2063397,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118818,wt.AT.CHX.ribo.11,NextSeq 550,ERR2003528,62968779,3148438950\nPRJEB21224,ERX2063398,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118819,wt.AT.CHX.ribo.13,NextSeq 550,ERR2003529,28486176,1424308800\nPRJEB21224,ERX2063399,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118820,wt.AT.mrna.2B,NextSeq 550,ERR2003530,39443224,2984603676\nPRJEB21224,ERX2063400,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118821,wt.AT.mrna.3,NextSeq 550,ERR2003531,14151645,1070787968\nPRJEB21224,ERX2063401,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118822,wt.AT.mrna.4,NextSeq 550,ERR2003532,39994820,3026173391\nPRJEB21224,ERX2063402,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118823,wt.AT.noCHX.mrna.11,NextSeq 550,ERR2003533,18348290,917414500\nPRJEB21224,ERX2063403,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118824,wt.AT.noCHX.mrna.13,NextSeq 550,ERR2003534,27306569,1365328450\nPRJEB21224,ERX2063404,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118825,wt.AT.noCHX.ribo.11,NextSeq 550,ERR2003535,119503388,5975169400\nPRJEB21224,ERX2063405,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118826,wt.AT.noCHX.ribo.13,NextSeq 550,ERR2003536,31631553,1581577650\nPRJEB21224,ERX2063406,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118827,wt.AT.ribo.2-1,NextSeq 550,ERR2003537,17283910,881479182\nPRJEB21224,ERX2063407,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118828,wt.AT.ribo.2-2,NextSeq 550,ERR2003538,60683650,3034182500\nPRJEB21224,ERX2063408,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118829,wt.AT.ribo.3,NextSeq 550,ERR2003539,37185178,1859258900\nPRJEB21224,ERX2063409,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118830,wt.AT.ribo.4,NextSeq 550,ERR2003540,68616943,3430847150\nPRJEB21224,ERX2063410,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118831,wt.noAT.CHX.mrna.11,NextSeq 550,ERR2003541,4368155,218407750\nPRJEB21224,ERX2063411,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118832,wt.noAT.CHX.mrna.13,NextSeq 550,ERR2003542,36240950,1812047500\nPRJEB21224,ERX2063412,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118833,wt.noAT.CHX.ribo.11,NextSeq 550,ERR2003543,32008211,1600410550\nPRJEB21224,ERX2063413,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118834,wt.noAT.CHX.ribo.13,NextSeq 550,ERR2003544,26742065,1337103250\nPRJEB21224,ERX2063414,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118835,wt.noAT.mrna.2B,NextSeq 550,ERR2003545,24001975,1816117196\nPRJEB21224,ERX2063415,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118836,wt.noAT.mrna.3,NextSeq 550,ERR2003546,15509062,1173469392\nPRJEB21224,ERX2063416,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118837,wt.noAT.mrna.4,NextSeq 550,ERR2003547,23729256,1795439617\nPRJEB21224,ERX2063417,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118838,wt.noAT.noCHX.mrna.11,NextSeq 550,ERR2003548,19274273,963713650\nPRJEB21224,ERX2063418,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118839,wt.noAT.noCHX.mrna.13,NextSeq 550,ERR2003549,23972947,1198647350\nPRJEB21224,ERX2063419,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118840,wt.noAT.noCHX.ribo.11,NextSeq 550,ERR2003550,26638047,1331902350\nPRJEB21224,ERX2063420,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118841,wt.noAT.noCHX.ribo.13,NextSeq 550,ERR2003551,32968604,1648430200\nPRJEB21224,ERX2063421,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118842,wt.noAT.ribo.2,NextSeq 550,ERR2003552,3359956,171357719\nPRJEB21224,ERX2063422,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118843,wt.noAT.ribo.3,NextSeq 550,ERR2003553,30905560,1545278000\nPRJEB21224,ERX2063423,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118844,wt.noAT.ribo.4,NextSeq 550,ERR2003554,47605239,2380261950\nPRJEB22128,ERX2151380,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RIP-Seq,TRANSCRIPTOMIC,other,SAMEA104209704,Riboseq CHX pool,Illumina HiSeq 2000,ERR2093966,5129748,512974800\nPRJEB22128,ERX2151381,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209705,RNA-seq CHX 1,Illumina HiSeq 2000,ERR2093967,81139076,8113907600\nPRJEB22128,ERX2151382,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209706,RNA-seq CHX 2,Illumina HiSeq 2000,ERR2093968,80937413,8093741300\nPRJEB22128,ERX2151383,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209707,RNA-seq CHX 3,Illumina HiSeq 2000,ERR2093969,75600500,7560050000\nPRJEB23398,ERX2249169,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375964,ID18RPF,Illumina HiSeq 2500,ERR2193146,29058055,2934863555\nPRJEB23398,ERX2249170,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375965,ID18WT,Illumina HiSeq 2500,ERR2193147,45096290,4554725290\nPRJEB23398,ERX2249171,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375966,ID22RPF,Illumina HiSeq 2500,ERR2193148,43451260,4388577260\nPRJEB23398,ERX2249172,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375967,ID22WT,Illumina HiSeq 2500,ERR2193149,46404718,4686876518\nPRJEB23398,ERX2249173,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375968,ID25RPF,Illumina HiSeq 2500,ERR2193150,52071822,5259254022\nPRJEB23398,ERX2249174,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375969,ID25WT,Illumina HiSeq 2500,ERR2193151,33735834,3407319234\nPRJEB23398,ERX2249175,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375970,ID28RPF,Illumina HiSeq 2500,ERR2193152,47060340,4753094340\nPRJEB23398,ERX2249176,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375971,ID28WT,Illumina HiSeq 2500,ERR2193153,34725379,3507263279\nPRJEB23398,ERX2249177,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375972,ID29RPF,Illumina HiSeq 2500,ERR2193154,36753828,3712136628\nPRJEB23398,ERX2249178,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375973,ID29WT,Illumina HiSeq 2500,ERR2193155,37389224,3776311624\nPRJEB23398,ERX2249179,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375974,ID30RPF,Illumina HiSeq 2500,ERR2193156,58732724,5932005124\nPRJEB23398,ERX2249180,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375975,ID30WT,Illumina HiSeq 2500,ERR2193157,27507989,2778306889\nPRJEB23398,ERX2249181,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375976,ID31RPF,Illumina HiSeq 2500,ERR2193158,38200240,3858224240\nPRJEB23398,ERX2249182,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375977,ID31WT,Illumina HiSeq 2500,ERR2193159,31139926,3145132526\nPRJEB23562,ERX2256431,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104395996,Mock-RiboSeq-CHX-1,Illumina HiSeq 2000,ERR2201443,43087035,1347230056\nPRJEB23562,ERX2256432,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104395999,Mock-RNASeq-1,Illumina HiSeq 2000,ERR2201444,34760070,1082072656\nPRJEB23562,ERX2256433,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396001,Mock-RiboSeq-CHX-2,NextSeq 500,ERR2201445,7925554,229108181\nPRJEB23562,ERX2256434,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396002,Mock-RNASeq-2,NextSeq 500,ERR2201446,17904218,536508323\nPRJEB23562,ERX2256435,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396003,RiboSeq-CHX-1,Illumina HiSeq 2000,ERR2201447,62327174,1889305290\nPRJEB23562,ERX2256436,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396004,RiboSeq-HAR,Illumina HiSeq 2000,ERR2201448,29880691,918985348\nPRJEB23562,ERX2256437,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396005,RNASeq-1,Illumina HiSeq 2000,ERR2201449,99428786,3052553985\nPRJEB23562,ERX2256438,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396006,RiboSeq-CHX-2,NextSeq 500,ERR2201450,11326057,306768073\nPRJEB23562,ERX2256439,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396007,RNASeq-2,NextSeq 500,ERR2201451,17348527,519625143\nPRJEB26279,ERX2547744,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590062,Sample 10,NextSeq 500,ERR2528907,14307741,1087388316\nPRJEB26279,ERX2547745,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590063,Sample 1,NextSeq 500,ERR2528908,32539697,2473016956\nPRJEB26279,ERX2547746,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590064,Sample 2,NextSeq 500,ERR2528909,32365237,2459757997\nPRJEB26279,ERX2547747,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590065,Sample 3,NextSeq 500,ERR2528910,27720458,2106754808\nPRJEB26279,ERX2547748,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590066,Sample 4,NextSeq 500,ERR2528911,27618945,2099039820\nPRJEB26279,ERX2547749,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590067,Sample 5,NextSeq 500,ERR2528912,29429175,2236617172\nPRJEB26279,ERX2547750,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590068,Sample 6,NextSeq 500,ERR2528913,53891222,4095732642\nPRJEB26279,ERX2547751,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590069,Sample 7,NextSeq 500,ERR2528914,25078726,1905983073\nPRJEB26279,ERX2547752,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590070,Sample 8,NextSeq 500,ERR2528915,33016656,2509265722\nPRJEB26279,ERX2547753,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590071,Sample 9,NextSeq 500,ERR2528916,13436449,1021170124\nPRJEB27418,ERX2676640,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753492,S1_eEF3_normal_rep1,Illumina HiSeq 2500,ERR2660262,143636526,7325462826\nPRJEB27418,ERX2676641,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753493,S3_eEF3_normal_rep2,Illumina HiSeq 2500,ERR2660263,133848724,6826284924\nPRJEB27418,ERX2676642,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753495,S5_eEF3_normal_rep1,Illumina HiSeq 2500,ERR2660264,87339001,4454289051\nPRJEB27418,ERX2676643,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753496,S7_eEF3_normal_rep2,Illumina HiSeq 2500,ERR2660265,81861785,4174951035\nPRJEB27418,ERX2676644,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753498,S2_eEF3_depleted_rep1,Illumina HiSeq 2500,ERR2660266,140684593,7174914243\nPRJEB27418,ERX2676645,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753500,S4_eEF3_depleted_rep2,Illumina HiSeq 2500,ERR2660267,132564691,6760799241\nPRJEB27418,ERX2676646,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753503,S6_eEF3_depleted_rep1,Illumina HiSeq 2500,ERR2660269,78528010,4004928510\nPRJEB27418,ERX2676647,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753504,S8_eEF3_depleted_rep2,Illumina HiSeq 2500,ERR2660271,79828450,4071250950\nPRJEB27604,ERX2696677,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776570,new1_KO_riboseq_S2,Illumina HiSeq 2500,ERR2681846,67361162,3435419262\nPRJEB27604,ERX2696678,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776571,new1_KO_riboseq_S4,Illumina HiSeq 2500,ERR2681847,80946528,4128272928\nPRJEB27604,ERX2696679,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776572,new1_KO_riboseq_S6,Illumina HiSeq 2500,ERR2681848,69690799,3554230749\nPRJEB27604,ERX2696680,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776573,WT_riboseq_S1,Illumina HiSeq 2500,ERR2681849,68722759,3504860709\nPRJEB27604,ERX2696681,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776574,WT_riboseq_S3,Illumina HiSeq 2500,ERR2681850,85579580,4364558580\nPRJEB27604,ERX2696682,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776575,WT_riboseq_S5,Illumina HiSeq 2500,ERR2681851,83078459,4237001409\nPRJEB27604,ERX2696683,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776576,new1_KO_RNAseq_S10,Illumina HiSeq 2500,ERR2681852,24694922,1259441022\nPRJEB27604,ERX2696684,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776577,new1_KO_RNAseq_S12,Illumina HiSeq 2500,ERR2681853,27198724,1387134924\nPRJEB27604,ERX2696685,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776578,new1_KO_RNAseq_S8,Illumina HiSeq 2500,ERR2681854,42548074,2169951774\nPRJEB27604,ERX2696686,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776579,WT_RNAseq_S11,Illumina HiSeq 2500,ERR2681855,22479763,1146467913\nPRJEB27604,ERX2696687,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776580,WT_RNAseq_S7,Illumina HiSeq 2500,ERR2681856,25728303,1312143453\nPRJEB27604,ERX2696688,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776581,WT_RNAseq_S9,Illumina HiSeq 2500,ERR2681857,24022337,1225139187\nPRJEB28810,ERX2819159,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939567,chicken_brain_ribo_1,Illumina HiSeq 2500,ERR2812328,89507736,9040281336\nPRJEB28810,ERX2819160,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939568,chicken_brain_ribo_2,Illumina HiSeq 2500,ERR2812329,<NA>,<NA>\nPRJEB28810,ERX2819161,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939569,chicken_brain_ribo_3,Illumina HiSeq 2500,ERR2812330,<NA>,<NA>\nPRJEB28810,ERX2819162,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939570,chicken_brain_rna_1,Illumina HiSeq 2500,ERR2812331,78156882,3986000982\nPRJEB28810,ERX2819163,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939571,chicken_brain_rna_2,Illumina HiSeq 2500,ERR2812332,<NA>,<NA>\nPRJEB28810,ERX2819164,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939572,chicken_brain_rna_3,Illumina HiSeq 2500,ERR2812333,<NA>,<NA>\nPRJEB28810,ERX2819165,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939573,chicken_liver_ribo_1,Illumina HiSeq 2500,ERR2812334,50822663,2591955813\nPRJEB28810,ERX2819166,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939574,chicken_liver_ribo_2,Illumina HiSeq 2500,ERR2812335,<NA>,<NA>\nPRJEB28810,ERX2819167,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939575,chicken_liver_ribo_3,Illumina HiSeq 2500,ERR2812336,<NA>,<NA>\nPRJEB28810,ERX2819168,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939576,chicken_liver_rna_1,Illumina HiSeq 2500,ERR2812337,102696548,5237523948\nPRJEB28810,ERX2819169,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939577,chicken_liver_rna_2,Illumina HiSeq 2500,ERR2812338,<NA>,<NA>\nPRJEB28810,ERX2819170,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939578,chicken_liver_rna_3,Illumina HiSeq 2500,ERR2812339,<NA>,<NA>\nPRJEB28810,ERX2819171,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939579,chicken_testis_ribo_1,Illumina HiSeq 2500,ERR2812340,176588839,9006030789\nPRJEB28810,ERX2819172,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939580,chicken_testis_ribo_2,Illumina HiSeq 2500,ERR2812341,<NA>,<NA>\nPRJEB28810,ERX2819173,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939581,chicken_testis_ribo_3,Illumina HiSeq 2500,ERR2812342,<NA>,<NA>\nPRJEB28810,ERX2819174,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939582,chicken_testis_rna_1,Illumina HiSeq 2500,ERR2812343,69052194,3521661894\nPRJEB28810,ERX2819175,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939583,chicken_testis_rna_2,Illumina HiSeq 2500,ERR2812344,<NA>,<NA>\nPRJEB28810,ERX2819176,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939584,chicken_testis_rna_3,Illumina HiSeq 2500,ERR2812345,<NA>,<NA>\nPRJEB28810,ERX2819177,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939585,human_brain_ribo_1,Illumina HiSeq 2500,ERR2812346,<NA>,<NA>\nPRJEB28810,ERX2819178,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939586,human_brain_ribo_2,Illumina HiSeq 2500,ERR2812347,<NA>,<NA>\nPRJEB28810,ERX2819179,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939587,human_brain_ribo_3,Illumina HiSeq 2500,ERR2812348,<NA>,<NA>\nPRJEB28810,ERX2819180,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939588,human_brain_rna_1,Illumina HiSeq 2500,ERR2812349,<NA>,<NA>\nPRJEB28810,ERX2819181,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939589,human_brain_rna_2,Illumina HiSeq 2500,ERR2812350,<NA>,<NA>\nPRJEB28810,ERX2819182,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939590,human_brain_rna_3,Illumina HiSeq 2500,ERR2812351,<NA>,<NA>\nPRJEB28810,ERX2819183,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939591,human_liver_ribo_1,Illumina HiSeq 2500,ERR2812352,<NA>,<NA>\nPRJEB28810,ERX2819184,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939592,human_liver_ribo_2,Illumina HiSeq 2500,ERR2812353,<NA>,<NA>\nPRJEB28810,ERX2819185,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939593,human_liver_ribo_3,Illumina HiSeq 2500,ERR2812354,<NA>,<NA>\nPRJEB28810,ERX2819186,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939594,human_liver_rna_1,Illumina HiSeq 2500,ERR2812355,<NA>,<NA>\nPRJEB28810,ERX2819187,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939595,human_liver_rna_2,Illumina HiSeq 2500,ERR2812356,<NA>,<NA>\nPRJEB28810,ERX2819188,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939596,human_liver_rna_3,Illumina HiSeq 2500,ERR2812357,<NA>,<NA>\nPRJEB28810,ERX2819189,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939597,human_testis_ribo_1,Illumina HiSeq 2500,ERR2812358,<NA>,<NA>\nPRJEB28810,ERX2819190,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939598,human_testis_ribo_2,Illumina HiSeq 2500,ERR2812359,<NA>,<NA>\nPRJEB28810,ERX2819191,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939599,human_testis_ribo_3,Illumina HiSeq 2500,ERR2812360,<NA>,<NA>\nPRJEB28810,ERX2819192,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939600,human_testis_rna_1,Illumina HiSeq 2500,ERR2812361,<NA>,<NA>\nPRJEB28810,ERX2819193,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939601,human_testis_rna_2,Illumina HiSeq 2500,ERR2812362,<NA>,<NA>\nPRJEB28810,ERX2819194,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939602,human_testis_rna_3,Illumina HiSeq 2500,ERR2812363,<NA>,<NA>\nPRJEB28810,ERX2819195,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939603,macaque_brain_ribo_1,Illumina HiSeq 2500,ERR2812364,<NA>,<NA>\nPRJEB28810,ERX2819196,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939604,macaque_brain_ribo_2,Illumina HiSeq 2500,ERR2812365,<NA>,<NA>\nPRJEB28810,ERX2819197,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939605,macaque_brain_ribo_3,Illumina HiSeq 2500,ERR2812366,<NA>,<NA>\nPRJEB28810,ERX2819198,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939606,macaque_brain_rna_1,Illumina HiSeq 2500,ERR2812367,<NA>,<NA>\nPRJEB28810,ERX2819199,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939607,macaque_brain_rna_2,Illumina HiSeq 2500,ERR2812368,<NA>,<NA>\nPRJEB28810,ERX2819200,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939608,macaque_brain_rna_3,Illumina HiSeq 2500,ERR2812369,<NA>,<NA>\nPRJEB28810,ERX2819201,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939609,macaque_liver_ribo_1,Illumina HiSeq 2500,ERR2812370,<NA>,<NA>\nPRJEB28810,ERX2819202,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939610,macaque_liver_ribo_2,Illumina HiSeq 2500,ERR2812371,<NA>,<NA>\nPRJEB28810,ERX2819203,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939611,macaque_liver_ribo_3,Illumina HiSeq 2500,ERR2812372,<NA>,<NA>\nPRJEB28810,ERX2819204,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939612,macaque_liver_rna_1,Illumina HiSeq 2500,ERR2812373,<NA>,<NA>\nPRJEB28810,ERX2819205,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939613,macaque_liver_rna_2,Illumina HiSeq 2500,ERR2812374,<NA>,<NA>\nPRJEB28810,ERX2819206,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939614,macaque_liver_rna_3,Illumina HiSeq 2500,ERR2812375,<NA>,<NA>\nPRJEB28810,ERX2819207,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939615,macaque_testis_ribo_1,Illumina HiSeq 2500,ERR2812376,<NA>,<NA>\nPRJEB28810,ERX2819208,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939616,macaque_testis_ribo_2,Illumina HiSeq 2500,ERR2812377,<NA>,<NA>\nPRJEB28810,ERX2819209,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939617,macaque_testis_ribo_3,Illumina HiSeq 2500,ERR2812378,<NA>,<NA>\nPRJEB28810,ERX2819210,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939618,macaque_testis_rna_1,Illumina HiSeq 2500,ERR2812379,<NA>,<NA>\nPRJEB28810,ERX2819211,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939619,macaque_testis_rna_2,Illumina HiSeq 2500,ERR2812380,<NA>,<NA>\nPRJEB28810,ERX2819212,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939620,macaque_testis_rna_3,Illumina HiSeq 2500,ERR2812381,<NA>,<NA>\nPRJEB28810,ERX2819213,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939621,mouse_brain_ribo_1,Illumina HiSeq 2500,ERR2812382,125913653,12717278953\nPRJEB28810,ERX2819214,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939622,mouse_brain_ribo_2,Illumina HiSeq 2500,ERR2812383,<NA>,<NA>\nPRJEB28810,ERX2819215,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939623,mouse_brain_ribo_3,Illumina HiSeq 2500,ERR2812384,<NA>,<NA>\nPRJEB28810,ERX2819216,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939624,mouse_brain_rna_1,Illumina HiSeq 2500,ERR2812385,59718135,6031531635\nPRJEB28810,ERX2819217,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939625,mouse_brain_rna_2,Illumina HiSeq 2500,ERR2812386,<NA>,<NA>\nPRJEB28810,ERX2819218,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939626,mouse_brain_rna_3,Illumina HiSeq 2500,ERR2812387,<NA>,<NA>\nPRJEB28810,ERX2819219,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939627,mouse_liver_ribo_1,Illumina HiSeq 2500,ERR2812388,133782505,11314315655\nPRJEB28810,ERX2819220,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939628,mouse_liver_ribo_2,Illumina HiSeq 2500,ERR2812389,<NA>,<NA>\nPRJEB28810,ERX2819221,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939629,mouse_liver_ribo_3,Illumina HiSeq 2500,ERR2812390,<NA>,<NA>\nPRJEB28810,ERX2819222,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939630,mouse_liver_rna_1,Illumina HiSeq 2500,ERR2812391,56370619,5693432519\nPRJEB28810,ERX2819223,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939631,mouse_liver_rna_2,Illumina HiSeq 2500,ERR2812392,<NA>,<NA>\nPRJEB28810,ERX2819224,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939632,mouse_liver_rna_3,Illumina HiSeq 2500,ERR2812393,<NA>,<NA>\nPRJEB28810,ERX2819225,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939633,mouse_testis_ribo_1,Illumina HiSeq 2500,ERR2812394,117238132,11841051332\nPRJEB28810,ERX2819226,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939634,mouse_testis_ribo_2,Illumina HiSeq 2500,ERR2812395,<NA>,<NA>\nPRJEB28810,ERX2819227,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939635,mouse_testis_ribo_3,Illumina HiSeq 2500,ERR2812396,<NA>,<NA>\nPRJEB28810,ERX2819228,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939636,mouse_testis_rna_1,Illumina HiSeq 2500,ERR2812397,60491740,6109665740\nPRJEB28810,ERX2819229,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939637,mouse_testis_rna_2,Illumina HiSeq 2500,ERR2812398,<NA>,<NA>\nPRJEB28810,ERX2819230,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939638,mouse_testis_rna_3,Illumina HiSeq 2500,ERR2812399,<NA>,<NA>\nPRJEB28810,ERX2819231,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939639,opossum_brain_ribo_1,Illumina HiSeq 2500,ERR2812400,99962696,5098097496\nPRJEB28810,ERX2819232,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939640,opossum_brain_ribo_2,Illumina HiSeq 2500,ERR2812401,<NA>,<NA>\nPRJEB28810,ERX2819233,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939641,opossum_brain_ribo_3,Illumina HiSeq 2500,ERR2812402,<NA>,<NA>\nPRJEB28810,ERX2819234,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939642,opossum_brain_rna_1,Illumina HiSeq 2500,ERR2812403,118076072,6021879672\nPRJEB28810,ERX2819235,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939643,opossum_brain_rna_2,Illumina HiSeq 2500,ERR2812404,<NA>,<NA>\nPRJEB28810,ERX2819236,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939644,opossum_brain_rna_3,Illumina HiSeq 2500,ERR2812405,<NA>,<NA>\nPRJEB28810,ERX2819237,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939645,opossum_liver_ribo_1,Illumina HiSeq 2500,ERR2812406,102073266,7960719316\nPRJEB28810,ERX2819238,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939646,opossum_liver_ribo_2,Illumina HiSeq 2500,ERR2812407,<NA>,<NA>\nPRJEB28810,ERX2819239,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939647,opossum_liver_ribo_3,Illumina HiSeq 2500,ERR2812408,<NA>,<NA>\nPRJEB28810,ERX2819240,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939648,opossum_liver_rna_1,Illumina HiSeq 2500,ERR2812409,122985784,8335560284\nPRJEB28810,ERX2819241,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939649,opossum_liver_rna_2,Illumina HiSeq 2500,ERR2812410,<NA>,<NA>\nPRJEB28810,ERX2819242,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939650,opossum_liver_rna_3,Illumina HiSeq 2500,ERR2812411,<NA>,<NA>\nPRJEB28810,ERX2819243,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939651,opossum_testis_ribo_1,Illumina HiSeq 2500,ERR2812412,372136872,18978980472\nPRJEB28810,ERX2819244,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939652,opossum_testis_ribo_2,Illumina HiSeq 2500,ERR2812413,<NA>,<NA>\nPRJEB28810,ERX2819245,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939653,opossum_testis_ribo_3,Illumina HiSeq 2500,ERR2812414,<NA>,<NA>\nPRJEB28810,ERX2819246,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939654,opossum_testis_rna_1,Illumina HiSeq 2500,ERR2812415,91675215,4675435965\nPRJEB28810,ERX2819247,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939655,opossum_testis_rna_2,Illumina HiSeq 2500,ERR2812416,<NA>,<NA>\nPRJEB28810,ERX2819248,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939656,opossum_testis_rna_3,Illumina HiSeq 2500,ERR2812417,<NA>,<NA>\nPRJEB28810,ERX2819249,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939657,platypus_brain_ribo_1,Illumina HiSeq 2500,ERR2812418,524355445,33524134145\nPRJEB28810,ERX2819250,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939658,platypus_brain_ribo_2,Illumina HiSeq 2500,ERR2812419,<NA>,<NA>\nPRJEB28810,ERX2819251,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939659,platypus_brain_ribo_3,Illumina HiSeq 2500,ERR2812420,<NA>,<NA>\nPRJEB28810,ERX2819252,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939660,platypus_brain_rna_1,Illumina HiSeq 2500,ERR2812421,88501433,4513573083\nPRJEB28810,ERX2819253,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939661,platypus_brain_rna_2,Illumina HiSeq 2500,ERR2812422,<NA>,<NA>\nPRJEB28810,ERX2819254,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939662,platypus_brain_rna_3,Illumina HiSeq 2500,ERR2812423,<NA>,<NA>\nPRJEB28810,ERX2819255,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939663,platypus_liver_ribo_1,Illumina HiSeq 2500,ERR2812424,205764142,10493971242\nPRJEB28810,ERX2819256,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939664,platypus_liver_ribo_2,Illumina HiSeq 2500,ERR2812425,<NA>,<NA>\nPRJEB28810,ERX2819257,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939665,platypus_liver_ribo_3,Illumina HiSeq 2500,ERR2812426,<NA>,<NA>\nPRJEB28810,ERX2819258,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939666,platypus_liver_rna_1,Illumina HiSeq 2500,ERR2812427,107403200,5477563200\nPRJEB28810,ERX2819259,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939667,platypus_liver_rna_2,Illumina HiSeq 2500,ERR2812428,<NA>,<NA>\nPRJEB28810,ERX2819260,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939668,platypus_liver_rna_3,Illumina HiSeq 2500,ERR2812429,<NA>,<NA>\nPRJEB28810,ERX2819261,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939669,platypus_testis_ribo_1,Illumina HiSeq 2500,ERR2812430,<NA>,<NA>\nPRJEB28810,ERX2819262,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939670,platypus_testis_ribo_2,Illumina HiSeq 2500,ERR2812431,<NA>,<NA>\nPRJEB28810,ERX2819263,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939671,platypus_testis_ribo_3,Illumina HiSeq 2500,ERR2812432,<NA>,<NA>\nPRJEB28810,ERX2819264,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939672,platypus_testis_rna_1,Illumina HiSeq 2500,ERR2812433,<NA>,<NA>\nPRJEB28810,ERX2819265,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939673,platypus_testis_rna_2,Illumina HiSeq 2500,ERR2812434,<NA>,<NA>\nPRJEB28810,ERX2819266,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939674,platypus_testis_rna_3,Illumina HiSeq 2500,ERR2812435,<NA>,<NA>\nPRJEB28810,ERX2819267,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939675,chicken_liver_ribo_4,Illumina HiSeq 2500,ERR2812436,<NA>,<NA>\nPRJEB28810,ERX2819268,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939676,chicken_liver_ribo_5,Illumina HiSeq 2500,ERR2812437,<NA>,<NA>\nPRJEB28810,ERX2819269,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939677,chicken_liver_rna_4,Illumina HiSeq 2500,ERR2812438,<NA>,<NA>\nPRJEB28810,ERX2819270,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939678,chicken_liver_rna_5,Illumina HiSeq 2500,ERR2812439,<NA>,<NA>\nPRJEB28810,ERX2819271,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939679,mouse_liver_ribo_4,Illumina HiSeq 2500,ERR2812440,<NA>,<NA>\nPRJEB28810,ERX2819272,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939680,mouse_liver_ribo_5,Illumina HiSeq 2500,ERR2812441,<NA>,<NA>\nPRJEB28810,ERX2819273,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939681,mouse_liver_rna_4,Illumina HiSeq 2500,ERR2812442,<NA>,<NA>\nPRJEB28810,ERX2819274,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939682,mouse_liver_rna_5,Illumina HiSeq 2500,ERR2812443,<NA>,<NA>\nPRJEB30076,ERX2979492,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147536,RPF_0h_n1,Illumina HiSeq 2500,ERR2976734,14287455,409427591\nPRJEB30076,ERX2979493,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147537,RPF_0h_n2,Illumina HiSeq 2500,ERR2976735,5520862,154466485\nPRJEB30076,ERX2979494,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147538,RPF_0h_n3,Illumina HiSeq 2500,ERR2976736,5499258,155393274\nPRJEB30076,ERX2979495,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147539,RPF_3h_n1,Illumina HiSeq 2500,ERR2976737,13926097,391986840\nPRJEB30076,ERX2979496,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147540,RPF_3h_n2,Illumina HiSeq 2500,ERR2976738,14126686,422171925\nPRJEB30076,ERX2979497,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147541,RPF_3h_n3,Illumina HiSeq 2500,ERR2976739,14499877,434534946\nPRJEB30076,ERX2979498,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147542,TotalRNA_0h_n1,Illumina HiSeq 2500,ERR2976740,27907935,866451536\nPRJEB30076,ERX2979499,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147543,TotalRNA_0h_n2,Illumina HiSeq 2500,ERR2976741,13444837,351478756\nPRJEB30076,ERX2979500,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147544,TotalRNA_0h_n3,Illumina HiSeq 2500,ERR2976742,23418108,620300138\nPRJEB30076,ERX2979501,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147545,TotalRNA_3h_n1,Illumina HiSeq 2500,ERR2976743,3499361,112009663\nPRJEB30076,ERX2979502,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147546,TotalRNA_3h_n2,Illumina HiSeq 2500,ERR2976744,11299566,305079262\nPRJEB30076,ERX2979503,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147547,TotalRNA_3h_n3,Illumina HiSeq 2500,ERR2976745,7169019,210001916\nPRJEB31666,ERX3245944,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417311,new1_KO_20C_riboseq_S6,Illumina HiSeq 2500,ERR3218426,42524298,2168739198\nPRJEB31666,ERX3245945,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417312,new1_KO_20C_riboseq_S8,Illumina HiSeq 2500,ERR3218427,47049069,2399502519\nPRJEB31666,ERX3245946,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417313,new1_KO_20C_rnaseq_S26,Illumina HiSeq 2500,ERR3218428,19253626,981934926\nPRJEB31666,ERX3245947,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417314,new1_KO_20C_rnaseq_S28,Illumina HiSeq 2500,ERR3218429,17912055,913514805\nPRJEB31666,ERX3245948,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417315,new1_KO_30C_riboseq_S2,Illumina HiSeq 2500,ERR3218430,41003606,2091183906\nPRJEB31666,ERX3245949,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417316,new1_KO_30C_riboseq_S4,Illumina HiSeq 2500,ERR3218431,46314080,2362018080\nPRJEB31666,ERX3245950,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417317,new1_KO_30C_rnaseq_S22,Illumina HiSeq 2500,ERR3218432,16606183,846915333\nPRJEB31666,ERX3245951,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417318,new1_KO_30C_rnaseq_S24,Illumina HiSeq 2500,ERR3218433,20180603,1029210753\nPRJEB31666,ERX3245952,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417319,WT_20C_riboseq_S5,Illumina HiSeq 2500,ERR3218434,36716398,1872536298\nPRJEB31666,ERX3245953,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417320,WT_20C_riboseq_S7,Illumina HiSeq 2500,ERR3218435,39097639,1993979589\nPRJEB31666,ERX3245954,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417321,WT_20C_rnaseq_S25,Illumina HiSeq 2500,ERR3218436,20712520,1056338520\nPRJEB31666,ERX3245955,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417322,WT_20C_rnaseq_S27,Illumina HiSeq 2500,ERR3218437,17927270,914290770\nPRJEB31666,ERX3245956,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417323,WT_30C_riboseq_S1,Illumina HiSeq 2500,ERR3218438,42073144,2145730344\nPRJEB31666,ERX3245957,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417324,WT_30C_riboseq_S3,Illumina HiSeq 2500,ERR3218439,44105472,2249379072\nPRJEB31666,ERX3245958,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417325,WT_30C_rnaseq_S21,Illumina HiSeq 2500,ERR3218440,32260678,1645294578\nPRJEB31666,ERX3245959,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417326,WT_30C_rnaseq_S23,Illumina HiSeq 2500,ERR3218441,28075810,1431866310\nPRJEB32121,ERX3303389,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563290,Sample 10,NextSeq 500,ERR3276516,55053803,2331547026\nPRJEB32121,ERX3303390,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563291,Sample 5,NextSeq 500,ERR3276517,26947157,1513258341\nPRJEB32121,ERX3303391,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563292,Sample 6,NextSeq 500,ERR3276518,55020617,2287339126\nPRJEB32121,ERX3303392,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563293,Sample 9,NextSeq 500,ERR3276519,26710399,1628290372\nPRJEB32121,ERX3303393,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563294,Sample 1,NextSeq 500,ERR3276520,24759896,1470848970\nPRJEB32121,ERX3303394,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563295,Sample 11,NextSeq 500,ERR3276521,40743255,720199228\nPRJEB32121,ERX3303395,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563296,Sample 12,NextSeq 500,ERR3276522,51225481,2179088593\nPRJEB32121,ERX3303396,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563297,Sample 2,NextSeq 500,ERR3276523,46244710,1870162578\nPRJEB32121,ERX3303397,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563298,Sample 3,NextSeq 500,ERR3276524,24691642,1389875907\nPRJEB32121,ERX3303398,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563299,Sample 4,NextSeq 500,ERR3276525,45214219,1852094222\nPRJEB32121,ERX3303399,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563300,Sample 7,NextSeq 500,ERR3276526,25782829,1431543565\nPRJEB32121,ERX3303400,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563301,Sample 8,NextSeq 500,ERR3276527,56002673,2257682429\nPRJEB32969,ERX3390678,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703368,Sample 1,NextSeq 500,ERR3366404,33896631,1214976883\nPRJEB32969,ERX3390679,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703369,Sample 2,NextSeq 500,ERR3366405,41162069,1528126888\nPRJEB32969,ERX3390680,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703370,Sample 3,NextSeq 500,ERR3366406,11238470,457167576\nPRJEB32969,ERX3390681,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703371,Sample 4,NextSeq 500,ERR3366407,12881017,487714175\nPRJEB28810,ERX3772928,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426174,mouse_elongatingSpermatids_ribo_1,Illumina HiSeq 2500,ERR3771179,<NA>,<NA>\nPRJEB28810,ERX3772929,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426175,mouse_elongatingSpermatids_ribo_2,Illumina HiSeq 2500,ERR3771180,<NA>,<NA>\nPRJEB28810,ERX3772930,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426176,mouse_elongatingSpermatids_rna_1,Illumina HiSeq 2500,ERR3771181,<NA>,<NA>\nPRJEB28810,ERX3772931,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426177,mouse_elongatingSpermatids_rna_2,Illumina HiSeq 2500,ERR3771182,<NA>,<NA>\nPRJEB28810,ERX3772932,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426178,mouse_roundSpermatids_ribo_1,Illumina HiSeq 2500,ERR3771183,219656784,22185335184\nPRJEB28810,ERX3772933,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426179,mouse_roundSpermatids_ribo_2,Illumina HiSeq 2500,ERR3771184,<NA>,<NA>\nPRJEB28810,ERX3772934,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426180,mouse_roundSpermatids_rna_1,Illumina HiSeq 2500,ERR3771185,97775962,9875372162\nPRJEB28810,ERX3772935,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426181,mouse_roundSpermatids_rna_2,Illumina HiSeq 2500,ERR3771186,<NA>,<NA>\nPRJEB28810,ERX3772936,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426182,mouse_spermatocytes_ribo_1,Illumina HiSeq 2500,ERR3771187,224389341,22663323441\nPRJEB28810,ERX3772937,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426183,mouse_spermatocytes_ribo_2,Illumina HiSeq 2500,ERR3771188,<NA>,<NA>\nPRJEB28810,ERX3772938,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426184,mouse_spermatocytes_rna_1,Illumina HiSeq 2500,ERR3771189,89103148,8999417948\nPRJEB28810,ERX3772939,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426185,mouse_spermatocytes_rna_2,Illumina HiSeq 2500,ERR3771190,<NA>,<NA>\nPRJEB28810,ERX3772940,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426186,mouse_spermatozoa_ribo_1,Illumina HiSeq 2500,ERR3771191,294527983,15020927133\nPRJEB28810,ERX3772941,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426187,mouse_spermatozoa_ribo_2,Illumina HiSeq 2500,ERR3771192,<NA>,<NA>\nPRJEB28810,ERX3772942,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426188,mouse_spermatozoa_rna_1,Illumina HiSeq 2500,ERR3771193,70036428,3571857828\nPRJEB28810,ERX3772943,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426189,mouse_spermatozoa_rna_2,Illumina HiSeq 2500,ERR3771194,<NA>,<NA>\nPRJEB5285,ERX385549,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341082,HeLa_Unk+Gfp_overexpression_replicate_1,Illumina HiSeq 2000,ERR419248,21602660,1101735660\nPRJEB5285,ERX385547,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341080,HeLa_Gfp_expression_control_replicate_1,Illumina HiSeq 2000,ERR419249,26065903,1329361053\nPRJEB5285,ERX385548,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341081,HeLa_Unk+Gfp_overexpression_replicate_3,Illumina HiSeq 2000,ERR419250,21264420,1084485420\nPRJEB5285,ERX385545,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341078,HeLa_Unk+Gfp_overexpression_replicate_2,Illumina HiSeq 2000,ERR419251,21619019,1102569969\nPRJEB5285,ERX385546,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341079,HeLa_Gfp_expression_control_replicate_2,Illumina HiSeq 2000,ERR419252,21819011,1112769561\nPRJEB5938,ERX432361,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,7227,Drosophila melanogaster,OTHER,OTHER,other,SAMEA2421582,Kc167_RNaseI,Illumina Genome Analyzer IIx,ERR466122,54573979,2279364497\nPRJEB5938,ERX432358,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,7227,Drosophila melanogaster,OTHER,OTHER,other,SAMEA2421579,Kc167_MN,Illumina Genome Analyzer IIx,ERR466123,45195752,1873531552\nPRJEB5938,ERX432359,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,9606,Homo sapiens,OTHER,OTHER,other,SAMEA2421580,U2OS_MN,Illumina Genome Analyzer IIx,ERR466124,44727293,1852579997\nPRJEB5938,ERX432360,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,9606,Homo sapiens,OTHER,OTHER,other,SAMEA2421581,U2OS_RNaseI,Illumina Genome Analyzer IIx,ERR466125,41623326,1799245747\nPRJEB7261,ERX556151,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2766082,smeg RNA-seq rep1,Illumina HiSeq 2500,ERR599189,89004821,4539245871\nPRJEB7261,ERX556152,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,OTHER,TRANSCRIPTOMIC,size fractionation,SAMEA2766083,smeg Ribo-seq rep1,Illumina HiSeq 2500,ERR599190,99829689,5091314139\nPRJEB7261,ERX556153,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2766084,smeg RNA-seq rep2,Illumina HiSeq 2500,ERR599191,100542696,5127677496\nPRJEB7261,ERX556154,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,OTHER,TRANSCRIPTOMIC,size fractionation,SAMEA2766085,smeg Ribo-seq rep2,Illumina HiSeq 2500,ERR599192,80612378,4111231278\nPRJEB7276,ERX558436,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,3055,Chlamydomonas reinhardtii,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769884,Chlamy-RNASeq-WT-2,Illumina HiSeq 2000,ERR601607,55247955,2707149795\nPRJEB7276,ERX558438,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,3055,Chlamydomonas reinhardtii,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769886,Chlamy-RiboSeq-WT-2,Illumina HiSeq 2000,ERR601608,26028360,1275389640\nPRJEB7276,ERX558437,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769885,MusMus-RNASeq,Illumina HiSeq 2000,ERR601609,80602120,4110708120\nPRJEB7276,ERX558439,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769887,MusMus-RiboSeq,Illumina HiSeq 2000,ERR601610,38543800,1965733800\nPRJEB7282,ERX561998,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770197,Ribosome_profiling_LUs19,Illumina HiSeq 2500,ERR605044,187831868,9391593400\nPRJEB7282,ERX561999,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770198,Ribosome_profiling_LUs18,Illumina HiSeq 2500,ERR605045,125136641,6256832050\nPRJEB7282,ERX562000,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770199,Ribosome_profiling_LUs20,Illumina HiSeq 2500,ERR605046,169888632,8494431600\nPRJEB7301,ERX575541,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130362,RyhB RNA-seq rep2,Illumina HiSeq 2500,ERR618768,204609482,5115237050\nPRJEB7301,ERX575542,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130357,RyhB RNA-seq rep1,Illumina HiSeq 2500,ERR618769,66334068,3383037468\nPRJEB7301,ERX575546,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130355,RyhB Ribo-seq rep2,Illumina HiSeq 2500,ERR618770,194819312,4870482800\nPRJEB7301,ERX575545,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130358,control Ribo-seq rep2,Illumina HiSeq 2500,ERR618771,161912593,4047814825\nPRJEB7301,ERX575543,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130361,RyhB Ribo-seq rep1,Illumina HiSeq 2500,ERR618772,69520696,3545555496\nPRJEB7301,ERX575540,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130359,control RNA-seq rep1,Illumina HiSeq 2500,ERR618773,94444604,4816674804\nPRJEB7301,ERX575544,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130360,control RNA-seq rep2,Illumina HiSeq 2500,ERR618774,188584261,4714606525\nPRJEB7301,ERX575539,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130356,control Ribo-seq rep1,Illumina HiSeq 2500,ERR618775,48903913,2494099563\nPRJNA564991,SRX6832089,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 3,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 3,376686,Flavobacterium johnsoniae UW101,OTHER,TRANSCRIPTOMIC,other,SAMN12730772,F johnsoniae culture 2016 replicate 3,Illumina HiSeq 2500,SRR10100140,19043505,440593520\nPRJNA564991,SRX6832088,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 2,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 2,376686,Flavobacterium johnsoniae UW101,OTHER,TRANSCRIPTOMIC,other,SAMN12730771,F johnsoniae culture 2016 replicate 2,Illumina HiSeq 2500,SRR10100141,14410982,335664145\nPRJNA564991,SRX6832087,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 1,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 1,986,Flavobacterium johnsoniae,OTHER,TRANSCRIPTOMIC,other,SAMN12730770,F johnsoniae culture 2016 replicate 1,Illumina HiSeq 2500,SRR10100142,26216828,637267461\nPRJNA573922,SRX6895802,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831194,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174361,43426278,3256970850\nPRJNA573922,SRX6895795,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831208,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174368,26966897,2022517275\nPRJNA573922,SRX6895794,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831207,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174369,39112396,2933429700\nPRJNA573922,SRX6895793,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831206,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174370,26837661,2012824575\nPRJNA573922,SRX6895788,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831202,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174375,63692380,4776928500\nPRJNA573922,SRX6895787,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831201,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174376,41691393,3126854475\nPRJNA573922,SRX6895786,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831200,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174377,49155765,3686682375\nPRJNA573922,SRX6895785,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831199,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174378,83368394,6252629550\nPRJNA573922,SRX6895784,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831198,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174379,83683932,6276294900\nPRJNA573922,SRX6895783,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831197,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174380,37912988,2843474100\nPRJNA573922,SRX6895782,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831196,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174381,<NA>,<NA>\nPRJNA573922,SRX6895781,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831195,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174382,57951230,4346342250\nPRJNA577942,SRX7007420,Illumina HiSeq 2500 sequencing; GSM4125802: Replicate 1 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125802: Replicate 1 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041939,Replicate 1 centrifugation harvesting ribosome profiling,Illumina HiSeq 2500,SRR10294592,24325319,1629796373\nPRJNA577942,SRX7007421,Illumina HiSeq 2500 sequencing; GSM4125803: Replicate 2 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125803: Replicate 2 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041938,Replicate 2 centrifugation harvesting ribosome profiling,Illumina HiSeq 2500,SRR10294593,108269604,7037524260\nPRJNA577942,SRX7007422,Illumina HiSeq 2500 sequencing; GSM4125804: Replicate 1 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125804: Replicate 1 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041936,Replicate 1 flash freeze harvesting no drugs ribosome profiling,Illumina HiSeq 2500,SRR10294594,4480382,448038200\nPRJNA577942,SRX7007423,Illumina HiSeq 2500 sequencing; GSM4125805: Replicate 2 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125805: Replicate 2 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041934,Replicate 2 flash freeze harvesting no drugs ribosome profiling,Illumina HiSeq 2500,SRR10294595,8990526,449526300\nPRJNA577942,SRX7007424,Illumina HiSeq 2500 sequencing; GSM4125806: Flash freeze harvesting with anisomycin ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125806: Flash freeze harvesting with anisomycin ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041933,Flash freeze harvesting with anisomycin ribosome profiling,Illumina HiSeq 2500,SRR10294596,9421109,471055450\nPRJNA577942,SRX7007425,Illumina HiSeq 2500 sequencing; GSM4125807: Flash freeze harvesting with harringtonine ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125807: Flash freeze harvesting with harringtonine ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041930,Flash freeze harvesting with harringtonine ribosome profiling,Illumina HiSeq 2500,SRR10294597,16070885,1607088500\nPRJNA577942,SRX7007426,Illumina HiSeq 2500 sequencing; GSM4125808: Flash freeze harvesting with serine hydroxamate ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125808: Flash freeze harvesting with serine hydroxamate ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041929,Flash freeze harvesting with serine hydroxamate ribosome profiling,Illumina HiSeq 2500,SRR10294598,15432004,1543200400\nPRJNA577942,SRX7007428,Illumina HiSeq 2500 sequencing; GSM4125810: Total RNA treated with MNase ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125810: Total RNA treated with MNase ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041923,Total RNA treated with MNase ribosome profiling,Illumina HiSeq 2500,SRR10294600,8365069,418253450\nPRJNA214730,SRX384923,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401351,Mixed parental selected mRNA fragments,Illumina HiSeq 2000,SRR1040263,112580832,4052909952\nPRJNA214730,SRX385099,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome footprint fraction replicate 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome footprint fraction replicate 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401352,Mixed parental ribosome protected fragments replicate 1,Illumina HiSeq 2000,SRR1040415,140321514,5051574504\nPRJNA214730,SRX385185,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401353,Mixed parental ribosome protected fragments replicate 2 lane 1,Illumina HiSeq 2000,SRR1040423,130172032,4686193152\nPRJNA214730,SRX385187,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 2,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 2,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401354,Mixed parental ribosome protected fragments replicate 2 lane 2,Illumina HiSeq 2000,SRR1040427,171400626,6170422536\nPRJNA230610,SRX387034,Illumina Genome Analyzer II sequencing; GSM1279707: Ribosome Profiling with Control siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279707: Ribosome Profiling with Control siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435722,Ribosome Profiling with Control siRNA,Illumina Genome Analyzer II,SRR1042900,21277427,893651934\nPRJNA230610,SRX387035,Illumina Genome Analyzer II sequencing; GSM1279708: Ribosome Profiling with AUF1 siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279708: Ribosome Profiling with AUF1 siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435724,Ribosome Profiling with AUF1 siRNA,Illumina Genome Analyzer II,SRR1042901,22678915,952514430\nPRJNA230610,SRX387036,Illumina Genome Analyzer II sequencing; GSM1279709: Ribosome Profiling with HuR siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279709: Ribosome Profiling with HuR siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435723,Ribosome Profiling with HuR siRNA,Illumina Genome Analyzer II,SRR1042902,3818427,160373934\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067765,30562326,1528116300\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067766,163797786,8353687086\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067767,60601845,3090694095\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067768,141202340,7201319340\nPRJNA232843,SRX403936,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566832,ribosome profiling in minimal media 1,Illumina HiSeq 2500,SRR1067769,88792279,4528406229\nPRJNA232843,SRX403936,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566832,ribosome profiling in minimal media 1,Illumina HiSeq 2500,SRR1067770,41605070,2121858570\nPRJNA232843,SRX403937,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566833,ribosome profiling in minimal media 2,Illumina HiSeq 2500,SRR1067771,65430349,3336947799\nPRJNA232843,SRX403937,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566833,ribosome profiling in minimal media 2,Illumina HiSeq 2500,SRR1067772,70786149,3610093599\nPRJNA602917,SRX7625186,NextSeq 500 sequencing; GSM4282352: Ribosome profiling_sgABCE1-1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282352: Ribosome profiling_sgABCE1-1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910616,Ribosome profiling_sgABCE1-1,NextSeq 500,SRR10959087,63652500,4901242500\nPRJNA602917,SRX7625187,NextSeq 500 sequencing; GSM4282353: Ribosome profiling_sgABCE1-2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282353: Ribosome profiling_sgABCE1-2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910615,Ribosome profiling_sgABCE1-2,NextSeq 500,SRR10959088,67271269,5179887713\nPRJNA602917,SRX7625188,NextSeq 500 sequencing; GSM4282354: Ribosome profiling_sgNT1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282354: Ribosome profiling_sgNT1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910614,Ribosome profiling_sgNT1,NextSeq 500,SRR10959089,91168220,7019952940\nPRJNA602917,SRX7625189,NextSeq 500 sequencing; GSM4282355: Ribosome profiling_sgNT2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282355: Ribosome profiling_sgNT2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910613,Ribosome profiling_sgNT2,NextSeq 500,SRR10959090,104512107,8047432239\nPRJNA609842,SRX7829328,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,591946,Escherichia coli LF82,RNA-Seq,OTHER,other,SAMN14260632,LF82-anaerobic,Illumina HiSeq 2500,SRR11217089,450754,10867843\nPRJNA609842,SRX7829327,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,591946,Escherichia coli LF82,RNA-Seq,OTHER,other,SAMN14260632,LF82-anaerobic,Illumina HiSeq 2500,SRR11217090,89211,1982957\nPRJNA237963,SRX469443,Illumina HiSeq 2000 sequencing; GSM1326110: M2G Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,Illumina HiSeq 2000 sequencing; GSM1326110: M2G Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,565050,Caulobacter vibrioides NA1000,OTHER,TRANSCRIPTOMIC,other,SAMN02640191,M2G Ribosome profiling,Illumina HiSeq 2000,SRR1167750,2656902,84987700\nPRJNA237963,SRX469444,Illumina HiSeq 2000 sequencing; GSM1326111: PYE Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,Illumina HiSeq 2000 sequencing; GSM1326111: PYE Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,565050,Caulobacter vibrioides NA1000,OTHER,TRANSCRIPTOMIC,other,SAMN02640188,PYE Ribosome profiling,Illumina HiSeq 2000,SRR1167751,4274091,130370413\nPRJNA633047,SRX8346823,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931307,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794832,10913971,818547825\nPRJNA633047,SRX8346822,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931307,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794833,13852845,1038963375\nPRJNA633047,SRX8346821,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931306,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794834,8940111,670508325\nPRJNA633047,SRX8346820,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931306,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794835,15366865,1152514875\nPRJNA633047,SRX8346819,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931305,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794836,11605004,870375300\nPRJNA633047,SRX8346818,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931305,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794837,23196621,1739746575\nPRJNA633047,SRX8346815,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931312,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794840,9198727,689904525\nPRJNA633047,SRX8346814,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931312,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794841,17944493,1345836975\nPRJNA633047,SRX8346813,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931311,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794842,8435062,632629650\nPRJNA633047,SRX8346812,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931311,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794843,21767715,1632578625\nPRJNA633047,SRX8346811,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KOWT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KOWT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931310,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794844,11905053,892878975\nPRJNA633047,SRX8346810,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931310,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794845,20046166,1503462450\nPRJNA633047,SRX8346809,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931309,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794846,7457075,559280625\nPRJNA633047,SRX8346808,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931309,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794847,17374979,1303123425\nPRJNA633047,SRX8346807,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931308,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794848,10427687,782076525\nPRJNA633047,SRX8346806,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931308,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794849,19019697,1426477275\nPRJNA634689,SRX8386869,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005046,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836448,145591529,7279576450\nPRJNA634689,SRX8386867,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005045,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836450,140445387,7022269350\nPRJNA634689,SRX8386865,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005044,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836452,105289031,5264451550\nPRJNA634689,SRX8386863,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005043,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836454,220484500,11024225000\nPRJNA634769,SRX8388156,Illumina NovaSeq 6000 sequencing; GSM4567011: Gcn2 WT +AA - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567011: Gcn2 WT +AA - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006898,Gcn2 WT +AA - Ribosome profiling,Illumina NovaSeq 6000,SRR11837742,25517300,959270048\nPRJNA634769,SRX8388157,Illumina NovaSeq 6000 sequencing; GSM4567012: Gcn2 WT -Leu - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567012: Gcn2 WT -Leu - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006897,Gcn2 WT -Leu - Ribosome profiling,Illumina NovaSeq 6000,SRR11837743,9333359,363034141\nPRJNA634769,SRX8388158,Illumina NovaSeq 6000 sequencing; GSM4567013: Gcn2 KO +AA - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567013: Gcn2 KO +AA - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006896,Gcn2 KO +AA - Ribosome profiling,Illumina NovaSeq 6000,SRR11837744,19672326,749452566\nPRJNA634769,SRX8388159,Illumina NovaSeq 6000 sequencing; GSM4567014: Gcn2 KO -Leu - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567014: Gcn2 KO -Leu - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006895,Gcn2 KO -Leu - Ribosome profiling,Illumina NovaSeq 6000,SRR11837745,15327574,596032744\nPRJNA644594,SRX8680381,\"Illumina HiSeq 2500 sequencing; GSM4658960: Ribosome profiling from untreated cells, rep 1; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658960: Ribosome profiling from untreated cells, rep 1; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464693,\"Ribosome profiling from untreated cells, rep 1\",Illumina HiSeq 2500,SRR12164922,12957040,647852000\nPRJNA644594,SRX8680383,\"Illumina HiSeq 2500 sequencing; GSM4658962: Ribosome profiling from untreated cells, rep 2; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658962: Ribosome profiling from untreated cells, rep 2; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464691,\"Ribosome profiling from untreated cells, rep 2\",Illumina HiSeq 2500,SRR12164924,13572040,678602000\nPRJNA644594,SRX8680385,\"Illumina HiSeq 2500 sequencing; GSM4658964: Ribosome profiling from untreated cells, rep 3; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658964: Ribosome profiling from untreated cells, rep 3; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464689,\"Ribosome profiling from untreated cells, rep 3\",Illumina HiSeq 2500,SRR12164926,13747244,687362200\nPRJNA644594,SRX8680387,\"Illumina HiSeq 2500 sequencing; GSM4658966: Ribosome profiling from radicicol cells, rep 1; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658966: Ribosome profiling from radicicol cells, rep 1; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464687,\"Ribosome profiling from radicicol cells, rep 1\",Illumina HiSeq 2500,SRR12164928,16942016,847100800\nPRJNA644594,SRX8680389,\"Illumina HiSeq 2500 sequencing; GSM4658968: Ribosome profiling from radicicol cells, rep 2; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658968: Ribosome profiling from radicicol cells, rep 2; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464684,\"Ribosome profiling from radicicol cells, rep 2\",Illumina HiSeq 2500,SRR12164930,19204213,960210650\nPRJNA644594,SRX8680391,\"Illumina HiSeq 2500 sequencing; GSM4658970: Ribosome profiling from radicicol cells, rep 3; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658970: Ribosome profiling from radicicol cells, rep 3; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464682,\"Ribosome profiling from radicicol cells, rep 3\",Illumina HiSeq 2500,SRR12164932,18470726,923536300\nPRJNA645135,SRX8699982,\"Illumina HiSeq 2500 sequencing; GSM4663991: control mouse brain, SMN-specific ribosome profiling, P5, rep 1; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663991: control mouse brain, SMN-specific ribosome profiling, P5, rep 1; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493455,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 1\",Illumina HiSeq 2500,SRR12185464,49288500,2464425000\nPRJNA645135,SRX8699983,\"Illumina HiSeq 2500 sequencing; GSM4663992: control mouse brain, SMN-specific ribosome profiling, P5, rep 2; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663992: control mouse brain, SMN-specific ribosome profiling, P5, rep 2; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493454,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 2\",Illumina HiSeq 2500,SRR12185465,33474442,1673722100\nPRJNA645135,SRX8699984,\"Illumina HiSeq 2500 sequencing; GSM4663993: control mouse brain, SMN-specific ribosome profiling, P5, rep 3; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663993: control mouse brain, SMN-specific ribosome profiling, P5, rep 3; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493464,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 3\",Illumina HiSeq 2500,SRR12185466,85414030,4270701500\nPRJNA645135,SRX8699985,\"Illumina HiSeq 2500 sequencing; GSM4663994: control mouse brain, IgG control ribosome profiling, P5, rep 1; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663994: control mouse brain, IgG control ribosome profiling, P5, rep 1; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493463,\"control mouse brain, IgG control ribosome profiling, P5, rep 1\",Illumina HiSeq 2500,SRR12185467,116656582,5832829100\nPRJNA245106,SRX523430,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 1 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 1 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731565,Saccharomyces cerevisiae Ribosome profiling Wild-type,Illumina HiSeq 2500,SRR1258539,28404464,1448627664\nPRJNA245106,SRX523431,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 2 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 2 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731565,Saccharomyces cerevisiae Ribosome profiling Wild-type,Illumina HiSeq 2500,SRR1258540,22793695,1162478445\nPRJNA245106,SRX523432,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 1 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 1 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731566,Saccharomyces cerevisiae Ribosome profiling upf1,Illumina HiSeq 2500,SRR1258541,21727393,1108097043\nPRJNA245106,SRX523433,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 2 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 2 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731566,Saccharomyces cerevisiae Ribosome profiling upf1,Illumina HiSeq 2500,SRR1258542,23351093,1190905743\nPRJNA245106,SRX523434,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, fragmented control\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, fragmented control\",4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMN02731567,\"Saccharomyces cerevisiae Ribosome profiling Wild-type, fragmented control\",Illumina HiSeq 2500,SRR1258543,7341479,374415429\nPRJNA245106,SRX523435,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, fragmented control\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, fragmented control\",4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMN02731568,\"Saccharomyces cerevisiae Ribosome profiling upf1, fragmented control\",Illumina HiSeq 2500,SRR1258544,7912713,403548363\nPRJNA253056,SRX610794,Illumina HiSeq 2000 sequencing; GSM1415871: ribosome profiling MicL t0; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1415871: ribosome profiling MicL t0; Escherichia coli; RNA-Seq,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02866373,ribosome profiling MicL t0,Illumina HiSeq 2000,SRR1425203,18782455,595176034\nPRJNA253056,SRX610795,Illumina HiSeq 2000 sequencing; GSM1415872: ribosome profiling MicL t20; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1415872: ribosome profiling MicL t20; Escherichia coli; RNA-Seq,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02866371,ribosome profiling MicL t20,Illumina HiSeq 2000,SRR1425204,28587329,869137845\nPRJNA261698,SRX708004,Illumina HiSeq 2000 sequencing; GSM1509451: Ribosome profiling data of untreated E. coli cells; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509451: Ribosome profiling data of untreated E. coli cells; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075507,Ribosome profiling data of untreated E. coli cells,Illumina HiSeq 2000,SRR1583082,22259168,1135217568\nPRJNA261698,SRX708005,Illumina HiSeq 2000 sequencing; GSM1509452: Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509452: Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075508,Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin,Illumina HiSeq 2000,SRR1583083,26096770,1330935270\nPRJNA261698,SRX708006,Illumina HiSeq 2000 sequencing; GSM1509453: Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509453: Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075509,Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin,Illumina HiSeq 2000,SRR1583084,23465502,1196740602\nPRJNA223608,SRX367006,Illumina Genome Analyzer II sequencing; GSM1248735: mock-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM1248735: mock-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380977,mock-transfected ribosome profiling,Illumina Genome Analyzer II,SRR1598971,28443731,1023974316\nPRJNA223608,SRX367000,Illumina HiSeq 2000 sequencing; GSM1248729: miR-1-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1248729: miR-1-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380975,miR-1-transfected ribosome profiling,Illumina HiSeq 2000,SRR1598975,92575736,4628786800\nPRJNA223608,SRX367003,Illumina Genome Analyzer II sequencing; GSM1248732: miR-155-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM1248732: miR-155-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380973,miR-155-transfected ribosome profiling,Illumina Genome Analyzer II,SRR1598981,29613617,1066090212\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660328,30964025,2322301875\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660329,39632893,2972466975\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660330,43632403,3272430225\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660331,38175907,2863193025\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660332,61772582,4632943650\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660333,21771791,661735742\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660334,30106441,2257983075\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660335,44297155,3322286625\nPRJNA268354,SRX767133,Illumina HiSeq 2000 sequencing; GSM1553248: Ribosome profiling rep1-SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553248: Ribosome profiling rep1-SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218424,Ribosome profiling rep1-SiControl-RPF,Illumina HiSeq 2000,SRR1661491,23525682,855434980\nPRJNA268354,SRX767134,Illumina HiSeq 2000 sequencing; GSM1553249: Ribosome profiling rep1-SiControl-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553249: Ribosome profiling rep1-SiControl-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218421,Ribosome profiling rep1-SiControl-input-ribominus,Illumina HiSeq 2000,SRR1661492,21062618,958344392\nPRJNA268354,SRX767135,Illumina HiSeq 2000 sequencing; GSM1553250: Ribosome profiling rep1-SiYTHDF1_1-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553250: Ribosome profiling rep1-SiYTHDF1_1-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218422,Ribosome profiling rep1-SiYTHDF1_1-RPF,Illumina HiSeq 2000,SRR1661493,36490823,1257840702\nPRJNA268354,SRX767136,Illumina HiSeq 2000 sequencing; GSM1553251: Ribosome profiling rep1-SiYTHDF1_1-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553251: Ribosome profiling rep1-SiYTHDF1_1-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218419,Ribosome profiling rep1-SiYTHDF1_1-input-ribominus,Illumina HiSeq 2000,SRR1661494,22039846,991227095\nPRJNA268354,SRX767137,Illumina HiSeq 2000 sequencing; GSM1553252: Ribosome profiling rep2-SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553252: Ribosome profiling rep2-SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218420,Ribosome profiling rep2-SiControl-RPF,Illumina HiSeq 2000,SRR1661495,26427579,966115970\nPRJNA268354,SRX767138,Illumina HiSeq 2000 sequencing; GSM1553253: Ribosome profiling rep2-SiControl-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553253: Ribosome profiling rep2-SiControl-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218426,Ribosome profiling rep2-SiControl-input-ribominus,Illumina HiSeq 2000,SRR1661496,26388944,1086043707\nPRJNA268354,SRX767139,Illumina HiSeq 2000 sequencing; GSM1553254: Ribosome profiling rep2-SiYTHDF1_8-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553254: Ribosome profiling rep2-SiYTHDF1_8-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218425,Ribosome profiling rep2-SiYTHDF1_8-RPF,Illumina HiSeq 2000,SRR1661497,26197590,927371837\nPRJNA268354,SRX767140,Illumina HiSeq 2000 sequencing; GSM1553255: Ribosome profiling rep2-SiYTHDF1_8-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553255: Ribosome profiling rep2-SiYTHDF1_8-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218427,Ribosome profiling rep2-SiYTHDF1_8-input-ribominus,Illumina HiSeq 2000,SRR1661498,29088381,1229624248\nPRJNA272662,SRX845439,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate1,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate1,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284755,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1763106,110961112,5548055600\nPRJNA272662,SRX845455,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate2,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate2,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284755,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1763107,132900577,6645028850\nPRJNA272662,SRX847139,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate1,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate1,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284757,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1765340,71262874,3563143700\nPRJNA272662,SRX847143,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate2,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate2,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284757,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1765360,78615417,3930770850\nPRJNA277363,SRX902511,Illumina HiSeq 2000 sequencing; GSM1625823: Cotyledon (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625823: Cotyledon (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389597,Cotyledon (25-50 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840399,51640489,2582024450\nPRJNA277363,SRX902513,Illumina HiSeq 2000 sequencing; GSM1625825: Cotyledon (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625825: Cotyledon (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389589,Cotyledon (25-50 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840401,77525914,7752591400\nPRJNA277363,SRX902515,Illumina HiSeq 2000 sequencing; GSM1625827: Seed Coat (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625827: Seed Coat (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389599,Seed Coat (25-50 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840403,50150107,2507505350\nPRJNA277363,SRX902517,Illumina HiSeq 2000 sequencing; GSM1625829: Seed Coat (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625829: Seed Coat (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389600,Seed Coat (25-50 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840405,58241888,2912094400\nPRJNA277363,SRX902519,Illumina HiSeq 2000 sequencing; GSM1625831: Cotyledon (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625831: Cotyledon (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389590,Cotyledon (100-200 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840407,86277212,4313860600\nPRJNA277363,SRX902521,Illumina HiSeq 2000 sequencing; GSM1625833: Cotyledon (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625833: Cotyledon (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389603,Cotyledon (100-200 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840409,100907777,10090777700\nPRJNA277363,SRX902523,Illumina HiSeq 2000 sequencing; GSM1625835: Seed Coat (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625835: Seed Coat (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389594,Seed Coat (100-200 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840411,57960236,2898011800\nPRJNA277363,SRX902525,Illumina HiSeq 2000 sequencing; GSM1625837: Seed Coat (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625837: Seed Coat (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389593,Seed Coat (100-200 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840413,72276634,3613831700\nPRJNA277363,SRX902527,Illumina HiSeq 2000 sequencing; GSM1625839: Cotyledon (300-400 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625839: Cotyledon (300-400 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389601,Cotyledon (300-400 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840415,82331167,4116558350\nPRJNA277363,SRX902529,Illumina HiSeq 2000 sequencing; GSM1625841: Cotyledon (300-400 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625841: Cotyledon (300-400 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389595,Cotyledon (300-400 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840417,66026031,3301301550\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964306,39082700,1954135000\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964307,52274080,2613704000\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964308,29216820,1460841000\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964309,46953344,2347667200\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964310,67731496,3386574800\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964311,22651281,1132564050\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964312,46189851,2309492550\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964313,65269559,3263477950\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964314,21259213,1062960650\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964315,43321863,2166093150\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964316,56929421,2846471050\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964317,22068321,1103416050\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964318,44125437,2206271850\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964319,61197424,3059871200\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964320,30423239,1521161950\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964321,50476436,2523821800\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964322,72527646,3626382300\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964323,25168492,1258424600\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964324,35262036,1763101800\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964325,24502833,1225141650\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964326,27538483,1376924150\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964327,34155138,1707756900\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964328,23825786,1191289300\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964329,23506757,1175337850\nPRJNA282016,SRX1006950,Illumina HiSeq 2000 sequencing; GSM1665594: swarmer M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665594: swarmer M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565828,swarmer M2G ribosome profiling,Illumina HiSeq 2000,SRR1991275,20703090,660389778\nPRJNA282016,SRX1006951,Illumina HiSeq 2000 sequencing; GSM1665595: early stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665595: early stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565829,early stalk M2G ribosome profiling,Illumina HiSeq 2000,SRR1991276,80717688,2400826270\nPRJNA282016,SRX1006952,Illumina HiSeq 2000 sequencing; GSM1665596: late stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665596: late stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565830,late stalk M2G ribosome profiling,Illumina HiSeq 2000,SRR1991277,22993484,674619628\nPRJNA282016,SRX1006953,Illumina HiSeq 2000 sequencing; GSM1665597: early prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665597: early prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565832,early prediv M2G ribosome profiling,Illumina HiSeq 2000,SRR1991278,17278060,518095336\nPRJNA282016,SRX1006954,Illumina HiSeq 2000 sequencing; GSM1665598: late prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665598: late prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565831,late prediv M2G ribosome profiling,Illumina HiSeq 2000,SRR1991279,20443469,604238206\nPRJNA282016,SRX1006955,Illumina HiSeq 2000 sequencing; GSM1665599: post division M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665599: post division M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565833,post division M2G ribosome profiling,Illumina HiSeq 2000,SRR1991280,13538820,382410272\nPRJNA282960,SRX1017035,\"Illumina HiSeq 2500 sequencing; GSM1666805: ATF4-/- ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666805: ATF4-/- ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581119,\"ATF4-/- ER ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007064,19223712,980409312\nPRJNA282960,SRX1017036,\"Illumina HiSeq 2500 sequencing; GSM1666806: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666806: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581120,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007065,20859677,1063843527\nPRJNA282960,SRX1017037,\"Illumina HiSeq 2500 sequencing; GSM1666807: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666807: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581117,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007066,22014222,1122725322\nPRJNA282960,SRX1017038,\"Illumina HiSeq 2500 sequencing; GSM1666808: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666808: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581118,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007067,21063979,1074262929\nPRJNA282960,SRX1017039,\"Illumina HiSeq 2500 sequencing; GSM1666809: ATF4-/- ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666809: ATF4-/- ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581121,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007068,22870593,1166400243\nPRJNA282960,SRX1017040,\"Illumina HiSeq 2500 sequencing; GSM1666810: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666810: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581122,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007069,21153634,1078835334\nPRJNA282960,SRX1017041,\"Illumina HiSeq 2500 sequencing; GSM1666811: ATF4-/- ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666811: ATF4-/- ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581123,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007070,23215960,1184013960\nPRJNA282960,SRX1017042,\"Illumina HiSeq 2500 sequencing; GSM1666812: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666812: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581124,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007071,22260855,1135303605\nPRJNA282960,SRX1017043,\"Illumina HiSeq 2500 sequencing; GSM1666813: ATF4-/- ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666813: ATF4-/- ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581125,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007072,23138057,1180040907\nPRJNA282960,SRX1017044,\"Illumina HiSeq 2500 sequencing; GSM1666814: ATF4-/- cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666814: ATF4-/- cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581126,\"ATF4-/- cytosol ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007073,22787710,1162173210\nPRJNA282960,SRX1017045,\"Illumina HiSeq 2500 sequencing; GSM1666815: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666815: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581127,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007074,20343583,1037522733\nPRJNA282960,SRX1017046,\"Illumina HiSeq 2500 sequencing; GSM1666816: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666816: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581128,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007075,20132638,1026764538\nPRJNA282960,SRX1017047,\"Illumina HiSeq 2500 sequencing; GSM1666817: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666817: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581129,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007076,20134079,1026838029\nPRJNA282960,SRX1017048,\"Illumina HiSeq 2500 sequencing; GSM1666818: ATF4-/- ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666818: ATF4-/- ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581130,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007077,22615405,1153385655\nPRJNA282960,SRX1017049,\"Illumina HiSeq 2500 sequencing; GSM1666819: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666819: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581131,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007078,20873353,1064541003\nPRJNA282960,SRX1017050,\"Illumina HiSeq 2500 sequencing; GSM1666820: ATF4-/- ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666820: ATF4-/- ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581132,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007079,21371573,1089950223\nPRJNA282960,SRX1017051,\"Illumina HiSeq 2500 sequencing; GSM1666821: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666821: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581133,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007080,21983441,1121155491\nPRJNA282960,SRX1017052,\"Illumina HiSeq 2500 sequencing; GSM1666822: ATF4-/- ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666822: ATF4-/- ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581134,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007081,22835371,1164603921\nPRJNA282960,SRX1017053,\"Illumina HiSeq 2500 sequencing; GSM1666823: ATF4-/- cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666823: ATF4-/- cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581135,\"ATF4-/- cytosol ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007082,20677901,1054572951\nPRJNA282960,SRX1017054,\"Illumina HiSeq 2500 sequencing; GSM1666824: ATF4-/- ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666824: ATF4-/- ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581057,\"ATF4-/- ER ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007083,21128656,1077561456\nPRJNA282960,SRX1017055,\"Illumina HiSeq 2500 sequencing; GSM1666825: eIF2A S51A ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666825: eIF2A S51A ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581058,\"eIF2A S51A ER ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007084,16251551,828829101\nPRJNA282960,SRX1017056,\"Illumina HiSeq 2500 sequencing; GSM1666826: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666826: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581059,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007085,18983118,968139018\nPRJNA282960,SRX1017057,\"Illumina HiSeq 2500 sequencing; GSM1666827: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666827: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581060,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007086,15833217,807494067\nPRJNA282960,SRX1017058,\"Illumina HiSeq 2500 sequencing; GSM1666828: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666828: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581061,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007087,17567181,895926231\nPRJNA282960,SRX1017059,\"Illumina HiSeq 2500 sequencing; GSM1666829: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666829: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581062,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007088,19935281,1016699331\nPRJNA282960,SRX1017060,\"Illumina HiSeq 2500 sequencing; GSM1666830: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666830: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581063,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007089,15247010,777597510\nPRJNA282960,SRX1017061,\"Illumina HiSeq 2500 sequencing; GSM1666831: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666831: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581064,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007090,13881251,707943801\nPRJNA282960,SRX1017062,\"Illumina HiSeq 2500 sequencing; GSM1666832: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666832: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581065,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007091,17489985,891989235\nPRJNA282960,SRX1017063,\"Illumina HiSeq 2500 sequencing; GSM1666833: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666833: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581066,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007092,15210074,775713774\nPRJNA282960,SRX1017064,\"Illumina HiSeq 2500 sequencing; GSM1666834: eIF2A S51A cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666834: eIF2A S51A cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581067,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007093,17142687,874277037\nPRJNA282960,SRX1017065,\"Illumina HiSeq 2500 sequencing; GSM1666835: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666835: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581068,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007094,20026160,1021334160\nPRJNA282960,SRX1017066,\"Illumina HiSeq 2500 sequencing; GSM1666836: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666836: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581069,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007095,18703857,953896707\nPRJNA282960,SRX1017067,\"Illumina HiSeq 2500 sequencing; GSM1666837: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666837: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581070,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007096,23577690,1202462190\nPRJNA282960,SRX1017068,\"Illumina HiSeq 2500 sequencing; GSM1666838: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666838: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581071,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007097,24731497,1261306347\nPRJNA282960,SRX1017069,\"Illumina HiSeq 2500 sequencing; GSM1666839: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666839: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581072,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007098,21716584,1107545784\nPRJNA282960,SRX1017070,\"Illumina HiSeq 2500 sequencing; GSM1666840: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666840: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581073,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007099,23696982,1208546082\nPRJNA282960,SRX1017071,\"Illumina HiSeq 2500 sequencing; GSM1666841: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666841: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581074,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007100,24517717,1250403567\nPRJNA282960,SRX1017072,\"Illumina HiSeq 2500 sequencing; GSM1666842: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666842: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581075,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007101,20573167,1049231517\nPRJNA282960,SRX1017073,\"Illumina HiSeq 2500 sequencing; GSM1666843: eIF2A S51A cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666843: eIF2A S51A cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581076,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007102,20689853,1055182503\nPRJNA282960,SRX1017074,\"Illumina HiSeq 2500 sequencing; GSM1666844: eIF2A S51A ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666844: eIF2A S51A ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581077,\"eIF2A S51A ER ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007103,20314148,1036021548\nPRJNA282960,SRX1017479,\"Illumina HiSeq 2500 sequencing; GSM1674110: WT cytosol ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674110: WT cytosol ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581028,\"WT cytosol ribosome profiling, 0.5 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007769,17607850,898000350\nPRJNA282960,SRX1017480,\"Illumina HiSeq 2500 sequencing; GSM1674111: WT cytosol ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674111: WT cytosol ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581029,\"WT cytosol ribosome profiling, 0.5 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007770,8004515,408230265\nPRJNA282960,SRX1017481,\"Illumina HiSeq 2500 sequencing; GSM1674112: WT ER ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674112: WT ER ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581030,\"WT ER ribosome profiling, 0.5 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007771,34274786,1748014086\nPRJNA282960,SRX1017482,\"Illumina HiSeq 2500 sequencing; GSM1674113: WT ER ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674113: WT ER ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581031,\"WT ER ribosome profiling, 0.5 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007772,44962240,2293074240\nPRJNA282960,SRX1017483,\"Illumina HiSeq 2500 sequencing; GSM1674114: WT cytosol ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674114: WT cytosol ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581032,\"WT cytosol ribosome profiling, 1 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007773,60458951,3083406501\nPRJNA282960,SRX1017484,\"Illumina HiSeq 2500 sequencing; GSM1674115: WT cytosol ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674115: WT cytosol ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581033,\"WT cytosol ribosome profiling, 1 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007774,5600537,285627387\nPRJNA282960,SRX1017485,\"Illumina HiSeq 2500 sequencing; GSM1674116: WT ER ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674116: WT ER ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581034,\"WT ER ribosome profiling, 1 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007775,29433660,1501116660\nPRJNA282960,SRX1017486,\"Illumina HiSeq 2500 sequencing; GSM1674117: WT ER ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674117: WT ER ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581035,\"WT ER ribosome profiling, 1 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007776,27741791,1414831341\nPRJNA282960,SRX1017487,\"Illumina HiSeq 2500 sequencing; GSM1674118: WT cytosol ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674118: WT cytosol ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581036,\"WT cytosol ribosome profiling, 2 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007777,20792693,1060427343\nPRJNA282960,SRX1017488,\"Illumina HiSeq 2500 sequencing; GSM1674119: WT cytosol ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674119: WT cytosol ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581037,\"WT cytosol ribosome profiling, 2 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007778,7300567,372328917\nPRJNA282960,SRX1017489,\"Illumina HiSeq 2500 sequencing; GSM1674120: WT ER ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674120: WT ER ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581038,\"WT ER ribosome profiling, 2 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007779,17578993,896528643\nPRJNA282960,SRX1017490,\"Illumina HiSeq 2500 sequencing; GSM1674121: WT ER ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674121: WT ER ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581039,\"WT ER ribosome profiling, 2 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007780,16585777,845874627\nPRJNA282960,SRX1017491,\"Illumina HiSeq 2500 sequencing; GSM1674122: WT cytosol ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674122: WT cytosol ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581040,\"WT cytosol ribosome profiling, 4 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007781,20561299,1048626249\nPRJNA282960,SRX1017492,\"Illumina HiSeq 2500 sequencing; GSM1674123: WT cytosol ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674123: WT cytosol ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581041,\"WT cytosol ribosome profiling, 4 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007782,15876938,809723838\nPRJNA282960,SRX1017493,\"Illumina HiSeq 2500 sequencing; GSM1674124: WT ER ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674124: WT ER ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581042,\"WT ER ribosome profiling, 4 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007783,8558520,436484520\nPRJNA282960,SRX1017494,\"Illumina HiSeq 2500 sequencing; GSM1674125: WT ER ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674125: WT ER ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581043,\"WT ER ribosome profiling, 4 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007784,35387962,1804786062\nPRJNA282960,SRX1017495,\"Illumina HiSeq 2500 sequencing; GSM1674126: WT cytosol ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674126: WT cytosol ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581044,\"WT cytosol ribosome profiling, no Tg (rep1)\",Illumina HiSeq 2500,SRR2007785,11957757,609845607\nPRJNA282960,SRX1017496,\"Illumina HiSeq 2500 sequencing; GSM1674127: WT cytosol ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674127: WT cytosol ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581045,\"WT cytosol ribosome profiling, no Tg (rep2)\",Illumina HiSeq 2500,SRR2007786,14492687,739127037\nPRJNA282960,SRX1017497,\"Illumina HiSeq 2500 sequencing; GSM1674128: WT ER ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674128: WT ER ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581046,\"WT ER ribosome profiling, no Tg (rep1)\",Illumina HiSeq 2500,SRR2007787,20017242,1020879342\nPRJNA282960,SRX1017498,\"Illumina HiSeq 2500 sequencing; GSM1674129: WT ER ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674129: WT ER ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581047,\"WT ER ribosome profiling, no Tg (rep2)\",Illumina HiSeq 2500,SRR2007788,14374170,733082670\nPRJNA285515,SRX1045363,Illumina HiSeq 2000 paired end sequencing; Shield Stage Embryos matched to Ribosome Profiling,Illumina HiSeq 2000 paired end sequencing; Shield Stage Embryos matched to Ribosome Profiling,7955,Danio rerio,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03754651,Danio rerio Shield Stage Embryos RNA-Seq,Illumina HiSeq 2000,SRR2047225,48328189,7345884728\nPRJNA285961,SRX1050328,Illumina HiSeq 2500 sequencing; GSM1704503: 6 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704503: 6 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763400,6 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052911,16250647,828782997\nPRJNA285961,SRX1050329,Illumina HiSeq 2500 sequencing; GSM1704504: 6 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704504: 6 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763401,6 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052912,18073831,921765381\nPRJNA285961,SRX1050330,Illumina HiSeq 2500 sequencing; GSM1704505: 12 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704505: 12 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763402,12 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052913,18948536,966375336\nPRJNA285961,SRX1050331,Illumina HiSeq 2500 sequencing; GSM1704506: 12 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704506: 12 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763403,12 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052914,26865068,1370118468\nPRJNA285961,SRX1050332,Illumina HiSeq 2500 sequencing; GSM1704507: 24 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704507: 24 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763404,24 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052915,26423896,1347618696\nPRJNA285961,SRX1050333,Illumina HiSeq 2500 sequencing; GSM1704508: 24 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704508: 24 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763405,24 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052916,13129805,669620055\nPRJNA285961,SRX1050334,Illumina HiSeq 2500 sequencing; GSM1704509: 40 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704509: 40 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763406,40 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052917,31892235,1626503985\nPRJNA285961,SRX1050335,Illumina HiSeq 2500 sequencing; GSM1704510: 40 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704510: 40 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763407,40 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052918,34039497,1736014347\nPRJNA285961,SRX1050336,Illumina HiSeq 2500 sequencing; GSM1704511: Interferon treatment cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704511: Interferon treatment cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763408,Interferon treatment cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052919,11895393,606665043\nPRJNA285961,SRX1050337,Illumina HiSeq 2500 sequencing; GSM1704512: Interferon treatment ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704512: Interferon treatment ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763409,Interferon treatment ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052920,7444252,379656852\nPRJNA285961,SRX1050338,Illumina HiSeq 2500 sequencing; GSM1704513: Uninfected cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704513: Uninfected cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763410,Uninfected cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052921,14469150,737926650\nPRJNA285961,SRX1050339,Illumina HiSeq 2500 sequencing; GSM1704514: Uninfected ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704514: Uninfected ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763411,Uninfected ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052922,14972823,763613973\nPRJNA285961,SRX1050340,Illumina HiSeq 2500 sequencing; GSM1704515: 6 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704515: 6 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763412,6 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052923,3399547,173376897\nPRJNA285961,SRX1050341,Illumina HiSeq 2500 sequencing; GSM1704516: 6 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704516: 6 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763413,6 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052924,6698199,341608149\nPRJNA285961,SRX1050342,Illumina HiSeq 2500 sequencing; GSM1704517: 12 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704517: 12 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763414,12 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052925,751226,38312526\nPRJNA285961,SRX1050343,Illumina HiSeq 2500 sequencing; GSM1704518: 12 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704518: 12 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763415,12 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052926,6988731,356425281\nPRJNA285961,SRX1050344,Illumina HiSeq 2500 sequencing; GSM1704519: 24 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704519: 24 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763416,24 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052927,6813487,347487837\nPRJNA285961,SRX1050345,Illumina HiSeq 2500 sequencing; GSM1704520: 24 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704520: 24 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763417,24 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052928,6242440,318364440\nPRJNA285961,SRX1050346,Illumina HiSeq 2500 sequencing; GSM1704521: 40 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704521: 40 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763418,40 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052929,3488237,177900087\nPRJNA285961,SRX1050347,Illumina HiSeq 2500 sequencing; GSM1704522: 40 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704522: 40 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763419,40 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052930,5860692,298895292\nPRJNA285961,SRX1050348,Illumina HiSeq 2500 sequencing; GSM1704523: Interferon treatment cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704523: Interferon treatment cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763420,Interferon treatment cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052931,4934701,251669751\nPRJNA285961,SRX1050349,Illumina HiSeq 2500 sequencing; GSM1704524: Interferon treatment ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704524: Interferon treatment ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763423,Interferon treatment ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052932,2421308,123486708\nPRJNA285961,SRX1050350,Illumina HiSeq 2500 sequencing; GSM1704525: Uninfected cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704525: Uninfected cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763424,Uninfected cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052933,4141321,211207371\nPRJNA285961,SRX1050351,Illumina HiSeq 2500 sequencing; GSM1704526: Uninfected ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704526: Uninfected ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763425,Uninfected ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052934,8749582,446228682\nPRJNA285961,SRX1050352,Illumina HiSeq 2500 sequencing; GSM1704527: 6 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704527: 6 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763426,6 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052935,17150043,874652193\nPRJNA285961,SRX1050353,Illumina HiSeq 2500 sequencing; GSM1704528: 6 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704528: 6 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763427,6 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052936,16165711,824451261\nPRJNA285961,SRX1050354,Illumina HiSeq 2500 sequencing; GSM1704529: 12 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704529: 12 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763428,12 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052937,17650994,900200694\nPRJNA285961,SRX1050355,Illumina HiSeq 2500 sequencing; GSM1704530: 12 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704530: 12 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763421,12 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052938,18658813,951599463\nPRJNA285961,SRX1050356,Illumina HiSeq 2500 sequencing; GSM1704531: 24 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704531: 24 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763422,24 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052939,16313320,831979320\nPRJNA285961,SRX1050357,Illumina HiSeq 2500 sequencing; GSM1704532: 24 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704532: 24 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763429,24 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052940,15616355,796434105\nPRJNA285961,SRX1050358,Illumina HiSeq 2500 sequencing; GSM1704533: 40 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704533: 40 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763370,40 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052941,12189412,621660012\nPRJNA285961,SRX1050359,Illumina HiSeq 2500 sequencing; GSM1704534: 40 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704534: 40 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763371,40 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052942,15349821,782840871\nPRJNA285961,SRX1050360,Illumina HiSeq 2500 sequencing; GSM1704535: Interferon treatment cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704535: Interferon treatment cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763372,Interferon treatment cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052943,12076928,615923328\nPRJNA285961,SRX1050361,Illumina HiSeq 2500 sequencing; GSM1704536: Interferon treatment ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704536: Interferon treatment ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763373,Interferon treatment ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052944,12808901,653253951\nPRJNA285961,SRX1050362,Illumina HiSeq 2500 sequencing; GSM1704537: Uninfected cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704537: Uninfected cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763374,Uninfected cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052945,19895121,1014651171\nPRJNA285961,SRX1050363,Illumina HiSeq 2500 sequencing; GSM1704538: Uninfected ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704538: Uninfected ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763375,Uninfected ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052946,22208615,1132639365\nPRJNA285961,SRX1050364,Illumina HiSeq 2500 sequencing; GSM1704539: 6 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704539: 6 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763376,6 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052947,2910736,148447536\nPRJNA285961,SRX1050365,Illumina HiSeq 2500 sequencing; GSM1704540: 6 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704540: 6 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763377,6 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052948,2339594,119319294\nPRJNA285961,SRX1050366,Illumina HiSeq 2500 sequencing; GSM1704541: 12 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704541: 12 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763378,12 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052949,3846689,196181139\nPRJNA285961,SRX1050367,Illumina HiSeq 2500 sequencing; GSM1704542: 12 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704542: 12 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763379,12 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052950,2870385,146389635\nPRJNA285961,SRX1050368,Illumina HiSeq 2500 sequencing; GSM1704543: 24 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704543: 24 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763380,24 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052951,2087976,106486776\nPRJNA285961,SRX1050369,Illumina HiSeq 2500 sequencing; GSM1704544: 24 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704544: 24 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763381,24 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052952,2291662,116874762\nPRJNA285961,SRX1050370,Illumina HiSeq 2500 sequencing; GSM1704545: 40 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704545: 40 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763382,40 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052953,8358678,426292578\nPRJNA285961,SRX1050371,Illumina HiSeq 2500 sequencing; GSM1704546: 40 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704546: 40 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763383,40 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052954,2257987,115157337\nPRJNA285961,SRX1050372,Illumina HiSeq 2500 sequencing; GSM1704547: Interferon treatment cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704547: Interferon treatment cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763384,Interferon treatment cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052955,15968518,814394418\nPRJNA285961,SRX1050373,Illumina HiSeq 2500 sequencing; GSM1704548: Interferon treatment ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704548: Interferon treatment ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763385,Interferon treatment ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052956,3080222,157091322\nPRJNA285961,SRX1050374,Illumina HiSeq 2500 sequencing; GSM1704549: Uninfected cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704549: Uninfected cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763386,Uninfected cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052957,2543624,129724824\nPRJNA285961,SRX1050375,Illumina HiSeq 2500 sequencing; GSM1704550: Uninfected ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704550: Uninfected ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763387,Uninfected ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052958,2587866,131981166\nPRJNA285961,SRX1050400,Illumina HiSeq 2500 sequencing; GSM1704575: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704575: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763467,12 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052983,50720722,2586756822\nPRJNA285961,SRX1050401,Illumina HiSeq 2500 sequencing; GSM1704576: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704576: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763468,24 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052984,32000428,1632021828\nPRJNA285961,SRX1050402,Illumina HiSeq 2500 sequencing; GSM1704577: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704577: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763469,48 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052985,29304738,1494541638\nPRJNA285961,SRX1050403,Illumina HiSeq 2500 sequencing; GSM1704578: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704578: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763470,6 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052986,31483076,1605636876\nPRJNA285961,SRX1050404,Illumina HiSeq 2500 sequencing; GSM1704579: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704579: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763471,72 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052987,31451899,1604046849\nPRJNA285961,SRX1050405,Illumina HiSeq 2500 sequencing; GSM1704580: Uninfected Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704580: Uninfected Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763472,Uninfected Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052988,30257426,1543128726\nPRJNA285961,SRX1050406,Illumina HiSeq 2500 sequencing; GSM1704581: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704581: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763473,12 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052989,50837419,2592708369\nPRJNA285961,SRX1050407,Illumina HiSeq 2500 sequencing; GSM1704582: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704582: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763474,24 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052990,35106005,1790406255\nPRJNA285961,SRX1050408,Illumina HiSeq 2500 sequencing; GSM1704583: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704583: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763475,48 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052991,35561514,1813637214\nPRJNA285961,SRX1050409,Illumina HiSeq 2500 sequencing; GSM1704584: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704584: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763476,6 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052992,34060969,1737109419\nPRJNA285961,SRX1050410,Illumina HiSeq 2500 sequencing; GSM1704585: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704585: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763477,72 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052993,35772157,1824380007\nPRJNA285961,SRX1050411,Illumina HiSeq 2500 sequencing; GSM1704586: Uninfected Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704586: Uninfected Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763478,Uninfected Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052994,32219386,1643188686\nPRJNA285961,SRX1050412,Illumina HiSeq 2500 sequencing; GSM1704587: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704587: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763479,12 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052995,29483113,1503638763\nPRJNA285961,SRX1050413,Illumina HiSeq 2500 sequencing; GSM1704588: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704588: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763480,24 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052996,27309344,1392776544\nPRJNA285961,SRX1050414,Illumina HiSeq 2500 sequencing; GSM1704589: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704589: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763481,48 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052997,36128791,1842568341\nPRJNA285961,SRX1050415,Illumina HiSeq 2500 sequencing; GSM1704590: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704590: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763482,6 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052998,29795235,1519556985\nPRJNA285961,SRX1050416,Illumina HiSeq 2500 sequencing; GSM1704591: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704591: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763483,72 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052999,46793485,2386467735\nPRJNA285961,SRX1050417,Illumina HiSeq 2500 sequencing; GSM1704592: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704592: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763484,12 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053000,33921101,1729976151\nPRJNA285961,SRX1050418,Illumina HiSeq 2500 sequencing; GSM1704593: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704593: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763485,24 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053001,35278187,1799187537\nPRJNA285961,SRX1050419,Illumina HiSeq 2500 sequencing; GSM1704594: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704594: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763430,48 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053002,32317528,1648193928\nPRJNA285961,SRX1050420,Illumina HiSeq 2500 sequencing; GSM1704595: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704595: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763431,6 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053003,34457090,1757311590\nPRJNA285961,SRX1050421,Illumina HiSeq 2500 sequencing; GSM1704596: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704596: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763432,72 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053004,40495001,2065245051\nPRJNA286218,SRX1054425,Ion Torrent PGM sequencing; GSM1707652: Ribosome profiling no exercise rep1; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707652: Ribosome profiling no exercise rep1; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766237,Ribosome profiling no exercise rep1,Ion Torrent PGM,SRR2057646,2743301,82639361\nPRJNA286218,SRX1054426,Ion Torrent PGM sequencing; GSM1707653: Ribosome profiling no exercise rep2; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707653: Ribosome profiling no exercise rep2; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766238,Ribosome profiling no exercise rep2,Ion Torrent PGM,SRR2057647,3049697,92492307\nPRJNA286218,SRX1054427,Ion Torrent PGM sequencing; GSM1707654: Ribosome profiling exercise rep1; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707654: Ribosome profiling exercise rep1; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766239,Ribosome profiling exercise rep1,Ion Torrent PGM,SRR2057648,3565792,104708331\nPRJNA286218,SRX1054428,Ion Torrent PGM sequencing; GSM1707655: Ribosome profiling exercise rep2; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707655: Ribosome profiling exercise rep2; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766240,Ribosome profiling exercise rep2,Ion Torrent PGM,SRR2057649,2673445,83153884\nPRJNA286792,SRX1056749,Illumina HiSeq 2500 sequencing; GSM1709012: ER Ribosome profiling Untreated 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709012: ER Ribosome profiling Untreated 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770657,ER Ribosome profiling Untreated 1,Illumina HiSeq 2500,SRR2060674,78647403,4011017553\nPRJNA286792,SRX1056750,Illumina HiSeq 2500 sequencing; GSM1709013: ER Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709013: ER Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770658,ER Ribosome profiling 0.5 h Tg 1,Illumina HiSeq 2500,SRR2060675,10680002,544680102\nPRJNA286792,SRX1056751,Illumina HiSeq 2500 sequencing; GSM1709014: ER Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709014: ER Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770659,ER Ribosome profiling 1 h Tg 1,Illumina HiSeq 2500,SRR2060676,10272599,523902549\nPRJNA286792,SRX1056752,Illumina HiSeq 2500 sequencing; GSM1709015: ER Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709015: ER Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770660,ER Ribosome profiling 2 h Tg 1,Illumina HiSeq 2500,SRR2060677,9291951,473889501\nPRJNA286792,SRX1056753,Illumina HiSeq 2500 sequencing; GSM1709016: ER Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709016: ER Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770661,ER Ribosome profiling 4 h Tg 1,Illumina HiSeq 2500,SRR2060678,7836885,399681135\nPRJNA286792,SRX1056754,Illumina HiSeq 2500 sequencing; GSM1709017: ER Ribosome profiling Untreated 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709017: ER Ribosome profiling Untreated 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770662,ER Ribosome profiling Untreated 2,Illumina HiSeq 2500,SRR2060679,12238357,624156207\nPRJNA286792,SRX1056755,Illumina HiSeq 2500 sequencing; GSM1709018: ER Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709018: ER Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770663,ER Ribosome profiling 0.5 h Tg 2,Illumina HiSeq 2500,SRR2060680,27383252,1396545852\nPRJNA286792,SRX1056756,Illumina HiSeq 2500 sequencing; GSM1709019: ER Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709019: ER Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770664,ER Ribosome profiling 1 h Tg 2,Illumina HiSeq 2500,SRR2060681,8062047,411164397\nPRJNA286792,SRX1056757,Illumina HiSeq 2500 sequencing; GSM1709020: ER Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709020: ER Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770665,ER Ribosome profiling 2 h Tg 2,Illumina HiSeq 2500,SRR2060682,18856341,961673391\nPRJNA286792,SRX1056758,Illumina HiSeq 2500 sequencing; GSM1709021: ER Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709021: ER Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770666,ER Ribosome profiling 4 h Tg 2,Illumina HiSeq 2500,SRR2060683,8565355,436833105\nPRJNA286792,SRX1056759,Illumina HiSeq 2500 sequencing; GSM1709022: Cytosol Ribosome profiling Untreated 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709022: Cytosol Ribosome profiling Untreated 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770667,Cytosol Ribosome profiling Untreated 1,Illumina HiSeq 2500,SRR2060684,4063729,207250179\nPRJNA286792,SRX1056760,Illumina HiSeq 2500 sequencing; GSM1709023: Cytosol Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709023: Cytosol Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770668,Cytosol Ribosome profiling 0.5 h Tg 1,Illumina HiSeq 2500,SRR2060685,29053643,1481735793\nPRJNA286792,SRX1056761,Illumina HiSeq 2500 sequencing; GSM1709024: Cytosol Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709024: Cytosol Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770669,Cytosol Ribosome profiling 1 h Tg 1,Illumina HiSeq 2500,SRR2060686,64964205,3313174455\nPRJNA286792,SRX1056762,Illumina HiSeq 2500 sequencing; GSM1709025: Cytosol Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709025: Cytosol Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770670,Cytosol Ribosome profiling 2 h Tg 1,Illumina HiSeq 2500,SRR2060687,21767084,1110121284\nPRJNA286792,SRX1056763,Illumina HiSeq 2500 sequencing; GSM1709026: Cytosol Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709026: Cytosol Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770671,Cytosol Ribosome profiling 4 h Tg 1,Illumina HiSeq 2500,SRR2060688,24180440,1233202440\nPRJNA286792,SRX1056764,Illumina HiSeq 2500 sequencing; GSM1709027: Cytosol Ribosome profiling Untreated 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709027: Cytosol Ribosome profiling Untreated 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770672,Cytosol Ribosome profiling Untreated 2,Illumina HiSeq 2500,SRR2060689,10236103,522041253\nPRJNA286792,SRX1056765,Illumina HiSeq 2500 sequencing; GSM1709028: Cytosol Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709028: Cytosol Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770673,Cytosol Ribosome profiling 0.5 h Tg 2,Illumina HiSeq 2500,SRR2060690,16977612,865858212\nPRJNA286792,SRX1056766,Illumina HiSeq 2500 sequencing; GSM1709029: Cytosol Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709029: Cytosol Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770674,Cytosol Ribosome profiling 1 h Tg 2,Illumina HiSeq 2500,SRR2060691,19996790,1019836290\nPRJNA286792,SRX1056767,Illumina HiSeq 2500 sequencing; GSM1709030: Cytosol Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709030: Cytosol Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770675,Cytosol Ribosome profiling 2 h Tg 2,Illumina HiSeq 2500,SRR2060692,10192777,519831627\nPRJNA286792,SRX1056768,Illumina HiSeq 2500 sequencing; GSM1709031: Cytosol Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709031: Cytosol Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770676,Cytosol Ribosome profiling 4 h Tg 2,Illumina HiSeq 2500,SRR2060693,24131402,1230701502\nPRJNA268354,SRX1070446,Illumina HiSeq 2000 sequencing; GSM1717890: Ribosome profiling SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717890: Ribosome profiling SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787322,Ribosome profiling SiControl-RPF,Illumina HiSeq 2000,SRR2075417,29365657,996912114\nPRJNA268354,SRX1070447,Illumina HiSeq 2000 sequencing; GSM1717891: Ribosome profiling SiControl-input-poly(A); Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717891: Ribosome profiling SiControl-input-poly(A); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787323,Ribosome profiling SiControl-input-poly(A),Illumina HiSeq 2000,SRR2075418,62485200,2952569004\nPRJNA268354,SRX1070448,Illumina HiSeq 2000 sequencing; GSM1717892: Ribosome profiling SiMETTL3-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717892: Ribosome profiling SiMETTL3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787324,Ribosome profiling SiMETTL3-RPF,Illumina HiSeq 2000,SRR2075419,25609568,1012594286\nPRJNA268354,SRX1070449,Illumina HiSeq 2000 sequencing; GSM1717893: Ribosome profiling SiMETTL3-input-poly(A); Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717893: Ribosome profiling SiMETTL3-input-poly(A); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787325,Ribosome profiling SiMETTL3-input-poly(A),Illumina HiSeq 2000,SRR2075420,44646468,4412410928\nPRJNA289569,SRX1092012,Illumina HiSeq 2500 sequencing; GSM1819217: Rluc control ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819217: Rluc control ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855826,Rluc control ribosome profiling rep1,Illumina HiSeq 2500,SRR2096964,40053175,2002658750\nPRJNA289569,SRX1092013,Illumina HiSeq 2500 sequencing; GSM1819218: DDX3 WT ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819218: DDX3 WT ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855827,DDX3 WT ribosome profiling rep1,Illumina HiSeq 2500,SRR2096965,27500547,1375027350\nPRJNA289569,SRX1092014,Illumina HiSeq 2500 sequencing; GSM1819219: DDX3 R534H ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819219: DDX3 R534H ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855828,DDX3 R534H ribosome profiling rep1,Illumina HiSeq 2500,SRR2096966,25807053,1290352650\nPRJNA289569,SRX1092015,Illumina HiSeq 2500 sequencing; GSM1819220: Rluc control ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819220: Rluc control ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855829,Rluc control ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096967,27874521,1393726050\nPRJNA289569,SRX1092016,Illumina HiSeq 2500 sequencing; GSM1819221: DDX3 WT ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819221: DDX3 WT ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855830,DDX3 WT ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096968,19408923,970446150\nPRJNA289569,SRX1092017,Illumina HiSeq 2500 sequencing; GSM1819222: DDX3 R534H ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819222: DDX3 R534H ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855831,DDX3 R534H ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096969,26932125,1346606250\nPRJNA289569,SRX1092018,Illumina HiSeq 2500 sequencing; GSM1819223: Rluc control ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819223: Rluc control ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855832,Rluc control ribosome profiling rep2,Illumina HiSeq 2500,SRR2096970,32077723,1603886150\nPRJNA289569,SRX1092019,Illumina HiSeq 2500 sequencing; GSM1819224: DDX3 WT ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819224: DDX3 WT ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855833,DDX3 WT ribosome profiling rep2,Illumina HiSeq 2500,SRR2096971,26066702,1303335100\nPRJNA289569,SRX1092020,Illumina HiSeq 2500 sequencing; GSM1819225: DDX3 R534H ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819225: DDX3 R534H ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855834,DDX3 R534H ribosome profiling rep2,Illumina HiSeq 2500,SRR2096972,20450140,1022507000\nPRJNA289569,SRX1092021,Illumina HiSeq 2500 sequencing; GSM1819226: Rluc control ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819226: Rluc control ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855835,Rluc control ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096973,20927350,1046367500\nPRJNA289569,SRX1092022,Illumina HiSeq 2500 sequencing; GSM1819227: DDX3 WT ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819227: DDX3 WT ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855836,DDX3 WT ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096974,27176847,1358842350\nPRJNA289569,SRX1092023,Illumina HiSeq 2500 sequencing; GSM1819228: DDX3 R534H ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819228: DDX3 R534H ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855837,DDX3 R534H ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096975,28797113,1439855650\nPRJNA296059,SRX1254413,Illumina HiSeq 2000 sequencing; GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq,Illumina HiSeq 2000 sequencing; GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq,9606,Homo sapiens,miRNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN04093818,ribosome profiling,Illumina HiSeq 2000,SRR2433794,31967082,916773615\nPRJNA299254,SRX1356474,NextSeq 500 sequencing; Ribosome profiling of lactimidomycin treated Jurkat cells,NextSeq 500 sequencing; Ribosome profiling of lactimidomycin treated Jurkat cells,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMN04195657,Lactimidomycin treated Jurkat cells,NextSeq 500,SRR2732970,378053973,28732101948\nPRJNA299254,SRX1356478,NextSeq 500 sequencing; Ribosome profiling of cycloheximide treated Jurkat cells,NextSeq 500 sequencing; Ribosome profiling of cycloheximide treated Jurkat cells,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMN04195655,Cycloheximide treated Jurkat cells,NextSeq 500,SRR2733100,388812515,29549751140\nPRJNA311041,SRX1562724,Illumina HiSeq 2000 sequencing; GSM2055244: ribosome profiling 37°C in WT; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM2055244: ribosome profiling 37°C in WT; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN04457972,ribosome profiling 37°C in WT,Illumina HiSeq 2000,SRR3147100,61258516,3124184316\nPRJNA314248,SRX1616307,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04531072,Ribosome profiling of HEK293 cells,Illumina HiSeq 2000,SRR3208296,44716778,1265915396\nPRJNA314248,SRX1616308,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531073,Ribosome profiling of MEF cells,Illumina HiSeq 2000,SRR3208406,23534216,729844417\nPRJNA314248,SRX1616309,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with WT 18S rRNA,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with WT 18S rRNA,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531074,Ribosome profiling of MEF cells transfected with WT 18S rRNA,Illumina HiSeq 2000,SRR3208450,27696228,850735689\nPRJNA314248,SRX1616310,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with mutant 18S rRNA,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with mutant 18S rRNA,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531075,Ribosome profiling of MEF cells transfected with mutant 18S rRNA,Illumina HiSeq 2000,SRR3208452,59116544,1698553234\nPRJNA316125,SRX1657158,Illumina HiSeq 2500 sequencing; GSM2097522: HBE cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097522: HBE cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576208,HBE cells ribosome profiling,Illumina HiSeq 2500,SRR3286543,110777954,5538897700\nPRJNA316125,SRX1657159,Illumina HiSeq 2500 sequencing; GSM2097523: A549 cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097523: A549 cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576209,A549 cells ribosome profiling,Illumina HiSeq 2500,SRR3286544,95891656,4794582800\nPRJNA316125,SRX1657160,Illumina HiSeq 2500 sequencing; GSM2097524: H1299 cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097524: H1299 cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576210,H1299 cells ribosome profiling,Illumina HiSeq 2500,SRR3286545,111526324,5576316200\nPRJNA316618,SRX1667364,Illumina HiSeq 2000 sequencing; GSM2100596: S phase ribosome profiling replicate 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100596: S phase ribosome profiling replicate 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588783,S phase ribosome profiling replicate 1,Illumina HiSeq 2000,SRR3306583,178511892,9104106492\nPRJNA316618,SRX1667365,Illumina HiSeq 2000 sequencing; GSM2100597: S phase ribosome profiling replicate 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100597: S phase ribosome profiling replicate 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588784,S phase ribosome profiling replicate 2,Illumina HiSeq 2000,SRR3306584,242256008,12355056408\nPRJNA316618,SRX1667366,Illumina HiSeq 2000 sequencing; GSM2100598: M phase ribosome profiling replicate 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100598: M phase ribosome profiling replicate 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588785,M phase ribosome profiling replicate 1,Illumina HiSeq 2000,SRR3306585,116546351,5943863901\nPRJNA316618,SRX1667367,Illumina HiSeq 2000 sequencing; GSM2100599: M phase ribosome profiling replicate 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100599: M phase ribosome profiling replicate 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588786,M phase ribosome profiling replicate 2,Illumina HiSeq 2000,SRR3306586,239897608,12234778008\nPRJNA316618,SRX1667368,Illumina HiSeq 2000 sequencing; GSM2100600: M phase ribosome profiling synchronized by shake off; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100600: M phase ribosome profiling synchronized by shake off; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588787,M phase ribosome profiling synchronized by shake off,Illumina HiSeq 2000,SRR3306587,242516177,12368325027\nPRJNA316618,SRX1667369,Illumina HiSeq 2000 sequencing; GSM2100601: Asynchronous cell ribosome profiling 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100601: Asynchronous cell ribosome profiling 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588788,Asynchronous cell ribosome profiling 1,Illumina HiSeq 2000,SRR3306588,173946221,8871257271\nPRJNA316618,SRX1667370,Illumina HiSeq 2000 sequencing; GSM2100602: Asynchronous cell ribosome profiling 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100602: Asynchronous cell ribosome profiling 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588789,Asynchronous cell ribosome profiling 2,Illumina HiSeq 2000,SRR3306589,242417925,12363314175\nPRJNA314248,SRX1616308,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531073,Ribosome profiling of MEF cells,Illumina HiSeq 2000,SRR3392126,60694250,1876859442\nPRJNA314248,SRX1704872,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Control for Methionine Starvation),Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Control for Methionine Starvation),9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04625643,HEK293T cells for Ribosome profiling (Control for Methionine Starvation),Illumina HiSeq 2000,SRR3392899,38333571,1136913910\nPRJNA314248,SRX1704873,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Methionine Starvation),Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Methionine Starvation),9606,Homo sapiens,OTHER,OTHER,other,SAMN04625644,HEK293T cells for Ribosome profiling (Methionine Starvation),Illumina HiSeq 2000,SRR3398188,38629161,1141710659\nPRJNA344393,SRX2189156,NextSeq 500 sequencing; GSM2327825: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327825: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821926,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin,NextSeq 500,SRR4293693,178964457,13601298732\nPRJNA344393,SRX2189157,NextSeq 500 sequencing; GSM2327826: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327826: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821925,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide,NextSeq 500,SRR4293694,184823119,14046557044\nPRJNA344393,SRX2189158,NextSeq 500 sequencing; GSM2327827: Ribosome profiling of control HCT116 cells treated with lactimidomycin; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327827: Ribosome profiling of control HCT116 cells treated with lactimidomycin; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821924,Ribosome profiling of control HCT116 cells treated with lactimidomycin,NextSeq 500,SRR4293695,199563521,15166827596\nPRJNA344393,SRX2189159,NextSeq 500 sequencing; GSM2327828: Ribosome profiling of control HCT116 cells treated with cycloheximide; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327828: Ribosome profiling of control HCT116 cells treated with cycloheximide; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821923,Ribosome profiling of control HCT116 cells treated with cycloheximide,NextSeq 500,SRR4293696,225042166,17103204616\nPRJNA348553,SRX2246398,Illumina HiSeq 2000 sequencing; GSM2346474: Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin; Arabidopsis thaliana; OTHER,Illumina HiSeq 2000 sequencing; GSM2346474: Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin; Arabidopsis thaliana; OTHER,3702,Arabidopsis thaliana,OTHER,TRANSCRIPTOMIC,other,SAMN05912771,Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin,Illumina HiSeq 2000,SRR4424237,104721382,5340790482\nPRJNA348553,SRX2246399,Illumina HiSeq 2000 sequencing; GSM2346475: Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide; Arabidopsis thaliana; OTHER,Illumina HiSeq 2000 sequencing; GSM2346475: Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide; Arabidopsis thaliana; OTHER,3702,Arabidopsis thaliana,OTHER,TRANSCRIPTOMIC,other,SAMN05912770,Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide,Illumina HiSeq 2000,SRR4424238,99524632,5075756232\nPRJNA158351,SRX137370,Illumina Genome Analyzer II sequencing; GSM910953: A3-1 Ribosome profiling - siLuc; Mus musculus; OTHER,Illumina Genome Analyzer II sequencing; GSM910953: A3-1 Ribosome profiling - siLuc; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN00854339,A3-1 Ribosome profiling - siLuc,Illumina Genome Analyzer II,SRR458756,21824511,785682396\nPRJNA158351,SRX137371,Illumina Genome Analyzer II sequencing; GSM910954: A3-1 Ribosome profiling - siLin28a; Mus musculus; OTHER,Illumina Genome Analyzer II sequencing; GSM910954: A3-1 Ribosome profiling - siLin28a; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN00854340,A3-1 Ribosome profiling - siLin28a,Illumina Genome Analyzer II,SRR458757,18520372,666733392\nPRJNA353604,SRX2349147,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026356,335001052,16750052600\nPRJNA353604,SRX2352572,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026359,66094062,3304703100\nPRJNA353604,SRX2352779,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026589,125934593,6296729650\nPRJNA353604,SRX2352796,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026592,109643569,5482178450\nPRJNA353604,SRX2352801,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026603,139378431,6968921550\nPRJNA353604,SRX2352818,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026637,138903638,6945181900\nPRJNA356772,SRX2407647,NextSeq 500 sequencing; GSM2420418: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,NextSeq 500 sequencing; GSM2420418: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,216597,Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN06127036,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes,NextSeq 500,SRR5090708,191796596,14576541296\nPRJNA356772,SRX2407648,NextSeq 500 sequencing; GSM2420419: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,NextSeq 500 sequencing; GSM2420419: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,216597,Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN06127035,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes,NextSeq 500,SRR5090709,174834326,13287408776\nPRJNA340948,SRX2416031,Illumina HiSeq 4000 sequencing; GSM2424851: Ribosome profiling-siControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424851: Ribosome profiling-siControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131999,Ribosome profiling-siControl-RPF,Illumina HiSeq 4000,SRR5099275,48648149,2432407450\nPRJNA340948,SRX2416032,Illumina HiSeq 4000 sequencing; GSM2424852: Ribosome profiling-siControl-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424852: Ribosome profiling-siControl-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131998,Ribosome profiling-siControl-input,Illumina HiSeq 4000,SRR5099276,46915311,2345765550\nPRJNA340948,SRX2416033,Illumina HiSeq 4000 sequencing; GSM2424853: Ribosome profiling-rep1-siYTHDF3-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424853: Ribosome profiling-rep1-siYTHDF3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131997,Ribosome profiling-rep1-siYTHDF3-RPF,Illumina HiSeq 4000,SRR5099277,41072030,2053601500\nPRJNA340948,SRX2416034,Illumina HiSeq 4000 sequencing; GSM2424854: Ribosome profiling-rep1-siYTHDF3-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424854: Ribosome profiling-rep1-siYTHDF3-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131996,Ribosome profiling-rep1-siYTHDF3-input,Illumina HiSeq 4000,SRR5099278,39819574,1990978700\nPRJNA340948,SRX2416035,Illumina HiSeq 4000 sequencing; GSM2424855: Ribosome profiling-rep2-siYTHDF3-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424855: Ribosome profiling-rep2-siYTHDF3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131995,Ribosome profiling-rep2-siYTHDF3-RPF,Illumina HiSeq 4000,SRR5099279,48158932,2407946600\nPRJNA340948,SRX2416036,Illumina HiSeq 4000 sequencing; GSM2424856: Ribosome profiling-rep2-siYTHDF3-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424856: Ribosome profiling-rep2-siYTHDF3-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131994,Ribosome profiling-rep2-siYTHDF3-input,Illumina HiSeq 4000,SRR5099280,54048791,2702439550\nPRJNA311041,SRX2502104,Illumina HiSeq 4000 sequencing; GSM2462933: ribosome profiling 37°C in WT with control plasmid; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462933: ribosome profiling 37°C in WT with control plasmid; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240270,ribosome profiling 37°C in WT with control plasmid,Illumina HiSeq 4000,SRR5186136,61670104,3145175304\nPRJNA311041,SRX2502105,Illumina HiSeq 4000 sequencing; GSM2462934: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462934: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240269,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA,Illumina HiSeq 4000,SRR5186137,68702208,3503812608\nPRJNA311041,SRX2502106,Illumina HiSeq 4000 sequencing; GSM2462935: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462935: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240268,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG,Illumina HiSeq 4000,SRR5186138,43070262,2196583362\nPRJNA369552,SRX2532339,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with harringtonine,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with harringtonine,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06289120,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,Illumina HiSeq 2500,SRR5223162,31545576,1608824376\nPRJNA369552,SRX2532340,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with cycloheximide,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with cycloheximide,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06289120,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,Illumina HiSeq 2500,SRR5223163,28042962,1430191062\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239050,8854232,451565832\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239051,8867186,452226486\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239052,7927705,404312955\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239053,7894562,402622662\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239054,9216208,470026608\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239055,9218352,470135952\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239056,15501047,790553397\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239057,15538226,792449526\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239058,12487833,636879483\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239059,12480350,636497850\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239060,13840587,705869937\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239061,13903399,709073349\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239062,10734719,547470669\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239063,10757923,548654073\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239064,9189103,468644253\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239065,9168761,467606811\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239066,10490820,535031820\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239067,10510772,536049372\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239068,15528375,791947125\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239069,15552791,793192341\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239070,12819970,653818470\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239071,12805289,653069739\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239072,14501119,739557069\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239073,14557524,742433724\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239074,10128748,516566148\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239075,10149979,517648929\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239076,8844053,451046703\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239077,8826385,450145635\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239078,10169123,518625273\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239079,10199333,520165983\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239080,13771867,702365217\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239081,13769712,702255312\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239082,12473768,636162168\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239083,12393265,632056515\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239084,14602972,744751572\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239085,14574634,743306334\nPRJNA379630,SRX2652914,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617379,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,Illumina HiSeq 2500,SRR5356885,92012581,4600629050\nPRJNA379630,SRX2652916,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617378,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,Illumina HiSeq 2500,SRR5356887,62093655,3104682750\nPRJNA379630,SRX2652918,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617377,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,Illumina HiSeq 2500,SRR5356889,100563944,5028197200\nPRJNA379630,SRX2652920,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617376,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,Illumina HiSeq 2500,SRR5356891,83809807,4190490350\nPRJNA379630,SRX2652922,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617375,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,Illumina HiSeq 2500,SRR5356893,90928652,4546432600\nPRJNA379630,SRX2652924,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617374,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,Illumina HiSeq 2500,SRR5356895,106331232,5316561600\nPRJNA379630,SRX2652926,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617373,Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,Illumina HiSeq 2500,SRR5356897,101520011,5076000550\nPRJNA379630,SRX2652928,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617372,Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,Illumina HiSeq 2500,SRR5356899,83560401,4178020050\nPRJNA379630,SRX2652930,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617371,Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,Illumina HiSeq 2500,SRR5356901,94948217,4747410850\nPRJNA379630,SRX2652932,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617370,Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,Illumina HiSeq 2500,SRR5356903,71767127,3588356350\nPRJNA379630,SRX2652934,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617369,Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,Illumina HiSeq 2500,SRR5356905,90030430,4501521500\nPRJNA379630,SRX2652936,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617368,Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,Illumina HiSeq 2500,SRR5356907,73952429,3697621450\nPRJNA384569,SRX2766861,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841405,RFP for puf3 ko mutant replicate 1,Illumina HiSeq 2000,SRR5483532,31667620,1583381000\nPRJNA384569,SRX2766864,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant rep2,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant rep2,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841406,RFP for puf3 ko mutant replicate 2,Illumina HiSeq 2000,SRR5483533,33068533,1653426650\nPRJNA384569,SRX2766865,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep1,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep1,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841407,RFP for WT replicate 1,Illumina HiSeq 2000,SRR5483534,24523690,1226184500\nPRJNA384569,SRX2766866,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep2,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep2,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841408,RFP for WT replicate 2,Illumina HiSeq 2000,SRR5483539,16691481,834574050\nPRJNA390134,SRX2902855,NextSeq 500 sequencing; GSM2664256: wild type ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664256: wild type ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220960,wild type ribosome profiling replicate 1,NextSeq 500,SRR5667267,46651854,1621851282\nPRJNA390134,SRX2902856,NextSeq 500 sequencing; GSM2664257: wild type ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664257: wild type ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220959,wild type ribosome profiling replicate 2,NextSeq 500,SRR5667268,122734505,4216803822\nPRJNA390134,SRX2902857,NextSeq 500 sequencing; GSM2664258: wild type ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664258: wild type ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220958,wild type ribosome profiling replicate 3,NextSeq 500,SRR5667269,45156367,1539402070\nPRJNA390134,SRX2902864,NextSeq 500 sequencing; GSM2664265: GluRIIA ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664265: GluRIIA ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220951,GluRIIA ribosome profiling replicate 1,NextSeq 500,SRR5667276,35199688,1194135764\nPRJNA390134,SRX2902865,NextSeq 500 sequencing; GSM2664266: GluRIIA ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664266: GluRIIA ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220950,GluRIIA ribosome profiling replicate 2,NextSeq 500,SRR5667277,78959629,2610438767\nPRJNA390134,SRX2902866,NextSeq 500 sequencing; GSM2664267: GluRIIA ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664267: GluRIIA ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220949,GluRIIA ribosome profiling replicate 3,NextSeq 500,SRR5667278,20752434,676573468\nPRJNA390134,SRX2902870,NextSeq 500 sequencing; GSM2664271: Tor-OE ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664271: Tor-OE ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220945,Tor-OE ribosome profiling replicate 1,NextSeq 500,SRR5667282,56343352,1940386794\nPRJNA390134,SRX2902871,NextSeq 500 sequencing; GSM2664272: Tor-OE ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664272: Tor-OE ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220944,Tor-OE ribosome profiling replicate 2,NextSeq 500,SRR5667283,32872272,1104998701\nPRJNA390134,SRX2902872,NextSeq 500 sequencing; GSM2664273: Tor-OE ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664273: Tor-OE ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220943,Tor-OE ribosome profiling replicate 3,NextSeq 500,SRR5667284,69053087,2392506309\nPRJNA391352,SRX2943745,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266693,\"Ribosome Profiling Input for WT, rep1\",Illumina HiSeq 2000,SRR5735992,16800285,2553643320\nPRJNA391352,SRX2943745,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266693,\"Ribosome Profiling Input for WT, rep1\",Illumina HiSeq 2000,SRR5735993,8361509,1270949368\nPRJNA391352,SRX2943746,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266700,\"Ribosome Profiling Input for WT, rep2\",Illumina HiSeq 2000,SRR5735994,15807404,2402725408\nPRJNA391352,SRX2943746,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266700,\"Ribosome Profiling Input for WT, rep2\",Illumina HiSeq 2000,SRR5735995,7892805,1199706360\nPRJNA391352,SRX2943747,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266699,\"Ribosome Profiling Input for KO, rep1\",Illumina HiSeq 2000,SRR5735996,17287993,2627774936\nPRJNA391352,SRX2943747,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266699,\"Ribosome Profiling Input for KO, rep1\",Illumina HiSeq 2000,SRR5735997,8808526,1338895952\nPRJNA391352,SRX2943748,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266698,\"Ribosome Profiling Input for KO, rep2\",Illumina HiSeq 2000,SRR5735998,16011015,2433674280\nPRJNA391352,SRX2943748,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266698,\"Ribosome Profiling Input for KO, rep2\",Illumina HiSeq 2000,SRR5735999,8221919,1249731688\nPRJNA391352,SRX2943749,\"Illumina HiSeq 2000 sequencing; GSM2678053: WT Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678053: WT Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266697,\"WT Ribosome Profiling, rep1\",Illumina HiSeq 2000,SRR5736000,49930735,3794735860\nPRJNA391352,SRX2943750,\"Illumina HiSeq 2000 sequencing; GSM2678054: WT Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678054: WT Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266696,\"WT Ribosome Profiling, rep2\",Illumina HiSeq 2000,SRR5736001,72687482,5524248632\nPRJNA391352,SRX2943751,\"Illumina HiSeq 2000 sequencing; GSM2678055: KO Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678055: KO Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266695,\"KO Ribosome Profiling, rep1\",Illumina HiSeq 2000,SRR5736002,64000307,4864023332\nPRJNA391352,SRX2943752,\"Illumina HiSeq 2000 sequencing; GSM2678056: KO Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678056: KO Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266694,\"KO Ribosome Profiling, rep2\",Illumina HiSeq 2000,SRR5736003,64705916,4917649616\nPRJNA392904,SRX2979029,Illumina HiSeq 4000 sequencing; GSM2692350: ribosome profiling 0h; Mus musculus; OTHER,Illumina HiSeq 4000 sequencing; GSM2692350: ribosome profiling 0h; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07312004,ribosome profiling 0h,Illumina HiSeq 4000,SRR5799562,64408917,1800217292\nPRJNA392904,SRX2979030,Illumina HiSeq 4000 sequencing; GSM2692351: ribosome profiling 12h; Mus musculus; OTHER,Illumina HiSeq 4000 sequencing; GSM2692351: ribosome profiling 12h; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07312003,ribosome profiling 12h,Illumina HiSeq 4000,SRR5799563,142369751,4133742550\nPRJNA399166,SRX3110787,Illumina HiSeq 2000 sequencing; GSM2747838: Ribosome Profiling H19:H391; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747838: Ribosome Profiling H19:H391; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525042,Ribosome Profiling H19:H391,Illumina HiSeq 2000,SRR5952328,202796598,10139829900\nPRJNA399166,SRX3110788,Illumina HiSeq 2000 sequencing; GSM2747839: Ribosome Profiling SECIS1 deletion2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747839: Ribosome Profiling SECIS1 deletion2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525041,Ribosome Profiling SECIS1 deletion2,Illumina HiSeq 2000,SRR5952329,202925674,10146283700\nPRJNA399166,SRX3110789,Illumina HiSeq 2000 sequencing; GSM2747840: Ribosome Profiling SECIS1 deletion3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747840: Ribosome Profiling SECIS1 deletion3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525040,Ribosome Profiling SECIS1 deletion3,Illumina HiSeq 2000,SRR5952330,196597095,9829854750\nPRJNA399166,SRX3110790,Illumina HiSeq 2000 sequencing; GSM2747841: Ribosome Profiling SECIS1 WT1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747841: Ribosome Profiling SECIS1 WT1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525039,Ribosome Profiling SECIS1 WT1,Illumina HiSeq 2000,SRR5952331,202636712,10131835600\nPRJNA399166,SRX3110791,Illumina HiSeq 2000 sequencing; GSM2747842: Ribosome Profiling SECIS1 WT2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747842: Ribosome Profiling SECIS1 WT2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525038,Ribosome Profiling SECIS1 WT2,Illumina HiSeq 2000,SRR5952332,189180961,9459048050\nPRJNA399166,SRX3110792,Illumina HiSeq 2000 sequencing; GSM2747843: Ribosome Profiling SECIS1 WT3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747843: Ribosome Profiling SECIS1 WT3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525037,Ribosome Profiling SECIS1 WT3,Illumina HiSeq 2000,SRR5952333,175785634,8789281700\nPRJNA399166,SRX3110799,Illumina HiSeq 2000 sequencing; GSM2747850: Ribosome Profiling SECIS2 WT1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747850: Ribosome Profiling SECIS2 WT1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525028,Ribosome Profiling SECIS2 WT1,Illumina HiSeq 2000,SRR5952340,228456278,11422813900\nPRJNA399166,SRX3110800,Illumina HiSeq 2000 sequencing; GSM2747851: Ribosome Profiling SECIS2 WT2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747851: Ribosome Profiling SECIS2 WT2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525032,Ribosome Profiling SECIS2 WT2,Illumina HiSeq 2000,SRR5952341,188204162,9410208100\nPRJNA399166,SRX3110801,Illumina HiSeq 2000 sequencing; GSM2747852: Ribosome Profiling SECIS2 WT3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747852: Ribosome Profiling SECIS2 WT3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525031,Ribosome Profiling SECIS2 WT3,Illumina HiSeq 2000,SRR5952342,203369022,10168451100\nPRJNA399166,SRX3110802,Illumina HiSeq 2000 sequencing; GSM2747853: Ribosome Profiling SECIS2 deletion1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747853: Ribosome Profiling SECIS2 deletion1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525030,Ribosome Profiling SECIS2 deletion1,Illumina HiSeq 2000,SRR5952343,202822349,10141117450\nPRJNA399166,SRX3110803,Illumina HiSeq 2000 sequencing; GSM2747854: Ribosome Profiling SECIS2 deletion2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747854: Ribosome Profiling SECIS2 deletion2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525019,Ribosome Profiling SECIS2 deletion2,Illumina HiSeq 2000,SRR5952344,226331185,11316559250\nPRJNA399166,SRX3110804,Illumina HiSeq 2000 sequencing; GSM2747855: Ribosome Profiling SECIS2 deletion3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747855: Ribosome Profiling SECIS2 deletion3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525027,Ribosome Profiling SECIS2 deletion3,Illumina HiSeq 2000,SRR5952345,197895247,9894762350\nPRJNA401857,SRX3157107,Illumina Genome Analyzer II sequencing; GSM2770989: Ribosome profiling at 37°C in WT cells_1; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770989: Ribosome profiling at 37°C in WT cells_1; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602624,Ribosome profiling at 37°C in WT cells_1,Illumina Genome Analyzer II,SRR6001737,20671753,614302032\nPRJNA401857,SRX3157108,Illumina Genome Analyzer II sequencing; GSM2770990: Ribosome profiling 10 min after shift to 10°C in WT cells_1; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770990: Ribosome profiling 10 min after shift to 10°C in WT cells_1; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602623,Ribosome profiling 10 min after shift to 10°C in WT cells_1,Illumina Genome Analyzer II,SRR6001738,16625543,487122180\nPRJNA401857,SRX3157109,Illumina Genome Analyzer II sequencing; GSM2770991: Ribosome profiling 30 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770991: Ribosome profiling 30 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602622,Ribosome profiling 30 min after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001739,8816443,253931666\nPRJNA401857,SRX3157110,Illumina Genome Analyzer II sequencing; GSM2770992: Ribosome profiling 2 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770992: Ribosome profiling 2 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602621,Ribosome profiling 2 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001740,7472980,210323047\nPRJNA401857,SRX3157111,Illumina Genome Analyzer II sequencing; GSM2770993: Ribosome profiling 3 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770993: Ribosome profiling 3 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602620,Ribosome profiling 3 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001741,16047781,463280196\nPRJNA401857,SRX3157112,Illumina Genome Analyzer II sequencing; GSM2770994: Ribosome profiling 4 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770994: Ribosome profiling 4 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602619,Ribosome profiling 4 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001742,5968378,168325033\nPRJNA401857,SRX3157113,Illumina Genome Analyzer II sequencing; GSM2770995: Ribosome profiling 6 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770995: Ribosome profiling 6 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602618,Ribosome profiling 6 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001743,6838687,194508545\nPRJNA401857,SRX3157114,Illumina HiSeq 2000 sequencing; GSM2770996: Ribosome profiling 5 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770996: Ribosome profiling 5 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602617,Ribosome profiling 5 min after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001744,38289935,1914496750\nPRJNA401857,SRX3157115,Illumina HiSeq 2000 sequencing; GSM2770997: Ribosome profiling 10 min after shift to 10°C in WT cells_2; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770997: Ribosome profiling 10 min after shift to 10°C in WT cells_2; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602616,Ribosome profiling 10 min after shift to 10°C in WT cells_2,Illumina HiSeq 2000,SRR6001745,11745422,587271100\nPRJNA401857,SRX3157116,Illumina HiSeq 2000 sequencing; GSM2770998: Ribosome profiling 15 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770998: Ribosome profiling 15 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602615,Ribosome profiling 15 min after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001746,16428973,821448650\nPRJNA401857,SRX3157117,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602614,Ribosome profiling 8 hr after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001747,11769741,600256791\nPRJNA401857,SRX3157117,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602614,Ribosome profiling 8 hr after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001748,11622124,592728324\nPRJNA401857,SRX3157118,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602613,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,Illumina HiSeq 2000,SRR6001749,12537556,639415356\nPRJNA401857,SRX3157118,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602613,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,Illumina HiSeq 2000,SRR6001750,12383731,631570281\nPRJNA401857,SRX3157119,Illumina HiSeq 2000 sequencing; GSM2771001: Ribosome profiling at 37°C in WT cells_2; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771001: Ribosome profiling at 37°C in WT cells_2; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602612,Ribosome profiling at 37°C in WT cells_2,Illumina HiSeq 2000,SRR6001751,61258516,3124184316\nPRJNA401857,SRX3157120,Illumina HiSeq 2000 sequencing; GSM2771002: Ribosome profiling at 37°C in ∆cspABCEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771002: Ribosome profiling at 37°C in ∆cspABCEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602611,Ribosome profiling at 37°C in ∆cspABCEG cells,Illumina HiSeq 2000,SRR6001752,59003587,3009182937\nPRJNA171327,SRX172315,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093931,\"Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",Illumina HiSeq 2000,SRR618770,9742062,467618976\nPRJNA171327,SRX172361,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093932,\"Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",Illumina HiSeq 2000,SRR618771,44827310,2151710880\nPRJNA171327,SRX172360,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093933,\"Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",Illumina HiSeq 2000,SRR618772,15628782,750181536\nPRJNA171327,SRX172392,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093934,\"Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",Illumina HiSeq 2000,SRR618773,28457106,1365941088\nPRJNA171327,SRX172393,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with cycloheximide,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with cycloheximide,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01094235,Ribosome profiling of MEF cells treated with cycloheximide,Illumina HiSeq 2000,SRR618774,25957180,1245944640\nPRJNA171327,SRX172394,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with lactimidomycin,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with lactimidomycin,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01094236,Ribosome profiling of MEF cells treated with lactimidomycin,Illumina HiSeq 2000,SRR618775,43068755,2067300240\nPRJNA181016,SRX205658,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 1,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816428,HEK293_CON_Rep1,Illumina Genome Analyzer II,SRR619082,10167363,416861883\nPRJNA181016,SRX205661,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816429,HEK293_CON_Rep2,Illumina HiSeq 2000,SRR619083,48902334,2347312032\nPRJNA181016,SRX205662,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816430,HEK293_AZC+MG132_Rep1,Illumina Genome Analyzer II,SRR619084,10921343,447775063\nPRJNA181016,SRX205663,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816431,HEK293_AZC+MG132_Rep2,Illumina HiSeq 2000,SRR619085,42857031,2057137488\nPRJNA181016,SRX205664,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC only,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC only,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816432,HEK293_AZC,Illumina Genome Analyzer II,SRR619086,5553281,227684521\nPRJNA181016,SRX205665,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with MG132 only,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with MG132 only,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816433,HEK293_MG132,Illumina Genome Analyzer II,SRR619087,10922721,447831561\nPRJNA181016,SRX205666,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816434,HEK293_DMSO,Illumina HiSeq 2000,SRR619088,10086263,484140624\nPRJNA181016,SRX205666,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816434,HEK293_DMSO,Illumina HiSeq 2000,SRR619089,4286560,205754880\nPRJNA181016,SRX205667,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816435,HEK293_VER,Illumina HiSeq 2000,SRR619090,8919827,428151696\nPRJNA181016,SRX205667,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816435,HEK293_VER,Illumina HiSeq 2000,SRR619091,3924183,188360784\nPRJNA181016,SRX205668,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816436,HEK293_PES,Illumina HiSeq 2000,SRR619092,8469084,406516032\nPRJNA181016,SRX205668,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816436,HEK293_PES,Illumina HiSeq 2000,SRR619093,3737571,179403408\nPRJNA181016,SRX205669,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816437,HEK293_GA,Illumina HiSeq 2000,SRR619094,9294787,446149776\nPRJNA181016,SRX205669,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816437,HEK293_GA,Illumina HiSeq 2000,SRR619095,4044711,194146128\nPRJNA181016,SRX205670,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells no treatment,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells no treatment,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816438,FRB-FKBP-Rapalog,Illumina Genome Analyzer II,SRR619096,19318730,1062530150\nPRJNA181016,SRX205671,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816439,FRB-FKBP+Rapalog,Illumina Genome Analyzer II,SRR619097,24771678,1362442290\nPRJNA181016,SRX205672,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells NOT expressing K71M,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells NOT expressing K71M,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816440,Hela_K71M+Dox,Illumina HiSeq 2000,SRR619098,24593755,1180500240\nPRJNA181016,SRX205673,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816441,Hela_K71M-Dox_Rep1,Illumina HiSeq 2000,SRR619099,22424972,1076398656\nPRJNA181016,SRX205675,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816442,Hela_K71M-Dox_Rep2,Illumina HiSeq 2000,SRR619100,46612873,2237417904\nPRJNA417011,SRX3358946,NextSeq 500 sequencing; GSM2838830: Dengue 1 ribosome profiling mRNA REP1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838830: Dengue 1 ribosome profiling mRNA REP1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974487,Dengue 1 ribosome profiling mRNA REP1,NextSeq 500,SRR6252013,127084864,9531364800\nPRJNA417011,SRX3358947,NextSeq 500 sequencing; GSM2838831: Dengue 1 ribosome profiling footprint REP1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838831: Dengue 1 ribosome profiling footprint REP1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974486,Dengue 1 ribosome profiling footprint REP1,NextSeq 500,SRR6252014,127716843,9578763225\nPRJNA417011,SRX3358948,NextSeq 500 sequencing; GSM2838832: Dengue 1 ribosome profiling mRNA REP2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838832: Dengue 1 ribosome profiling mRNA REP2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974437,Dengue 1 ribosome profiling mRNA REP2,NextSeq 500,SRR6252015,115517289,8663796675\nPRJNA417011,SRX3358949,NextSeq 500 sequencing; GSM2838833: Dengue 1 ribosome profiling footprint REP2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838833: Dengue 1 ribosome profiling footprint REP2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974489,Dengue 1 ribosome profiling footprint REP2,NextSeq 500,SRR6252016,128141714,9610628550\nPRJNA418190,SRX3388077,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022097,Ribo_HF_rep2,Illumina HiSeq 4000,SRR6286686,31815773,3181577300\nPRJNA418190,SRX3388076,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022096,Ribo_HF_rep1,Illumina HiSeq 4000,SRR6286687,31226831,3122683100\nPRJNA418190,SRX3388073,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022093,Ribo_CO_rep2,Illumina HiSeq 4000,SRR6286690,95785654,2709048603\nPRJNA418190,SRX3388072,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022092,Ribo_CO_rep1,Illumina HiSeq 4000,SRR6286691,74932501,2100103575\nPRJNA418190,SRX3388071,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022095,Ribo_H2CO2_rep2,Illumina HiSeq 4000,SRR6286692,44431801,4443180100\nPRJNA418190,SRX3388070,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022094,Ribo_H2CO2_rep1,Illumina HiSeq 4000,SRR6286693,50618624,5061862400\nPRJNA418997,SRX3415715,Illumina HiSeq 2000 sequencing; Hip1 total hippocampus Ribosome profiling,Illumina HiSeq 2000 sequencing; Hip1 total hippocampus Ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08040363,Hip1 total hippocampus Ribosome profiling,Illumina HiSeq 2000,SRR6315847,6628200,180389814\nPRJNA423188,SRX3489120,Illumina HiSeq 2500 sequencing; GSM2895436: KO-ribosome profiling; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895436: KO-ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213272,KO-ribosome profiling,Illumina HiSeq 2500,SRR6395814,31806217,1590310850\nPRJNA423188,SRX3489121,Illumina HiSeq 2500 sequencing; GSM2895437: KO-ribosome profiling input; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895437: KO-ribosome profiling input; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213281,KO-ribosome profiling input,Illumina HiSeq 2500,SRR6395815,43112301,2155615050\nPRJNA423188,SRX3489122,Illumina HiSeq 2500 sequencing; GSM2895438: WT-ribosome profiling; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895438: WT-ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213280,WT-ribosome profiling,Illumina HiSeq 2500,SRR6395816,40248624,2012431200\nPRJNA423188,SRX3489123,Illumina HiSeq 2500 sequencing; GSM2895439: WT-ribosome profiling input; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895439: WT-ribosome profiling input; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213279,WT-ribosome profiling input,Illumina HiSeq 2500,SRR6395817,33585015,1679250750\nPRJNA423188,SRX4044241,Illumina HiSeq 2500 sequencing; GSM3131863: WT-ribosome profiling replicate 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM3131863: WT-ribosome profiling replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076541,WT-ribosome profiling replicate 2,Illumina HiSeq 2500,SRR7123172,43725854,2186292700\nPRJNA423188,SRX4044242,Illumina HiSeq 3000 sequencing; GSM3131864: WT-ribosome profiling input replicate 2; Mus musculus; OTHER,Illumina HiSeq 3000 sequencing; GSM3131864: WT-ribosome profiling input replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076736,WT-ribosome profiling input replicate 2,Illumina HiSeq 3000,SRR7123173,26771648,8031494400\nPRJNA423188,SRX4044243,Illumina HiSeq 2500 sequencing; GSM3131865: KO-ribosome profiling replicate 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM3131865: KO-ribosome profiling replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076734,KO-ribosome profiling replicate 2,Illumina HiSeq 2500,SRR7123174,32054335,1602716750\nPRJNA423188,SRX4044244,Illumina HiSeq 3000 sequencing; GSM3131866: KO-ribosome profiling input replicate 2; Mus musculus; OTHER,Illumina HiSeq 3000 sequencing; GSM3131866: KO-ribosome profiling input replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076731,KO-ribosome profiling input replicate 2,Illumina HiSeq 3000,SRR7123175,24239197,7271759100\nPRJNA466150,SRX4053284,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #4,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #4,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091234,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132277,53840664,4038049800\nPRJNA466150,SRX4053275,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091232,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132286,96147759,7211081925\nPRJNA466150,SRX4053274,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091233,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132287,49283336,3696250200\nPRJNA466150,SRX4053273,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091226,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132288,78056300,5854222500\nPRJNA466150,SRX4053272,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #4,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #4,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091227,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132289,44947356,3371051700\nPRJNA466150,SRX4053271,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:control replicate #1,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:control replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091224,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,Illumina HiSeq 2000,SRR7132290,64927827,3246391350\nPRJNA466150,SRX4053270,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091225,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132291,89912857,6743464275\nPRJNA466150,SRX4053269,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091230,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132292,69602339,5220175425\nPRJNA466150,SRX4053268,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #1,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091231,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132293,57310413,2865520650\nPRJNA466150,SRX4053267,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1 replicate #1,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1 replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091228,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,Illumina HiSeq 2000,SRR7132294,106961271,8022095325\nPRJNA466150,SRX4053266,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091229,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132295,43401129,3255084675\nPRJNA473989,SRX4147683,Illumina HiSeq 2500 sequencing; GSM3168387: MDA-MB-231 ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168387: MDA-MB-231 ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288723,MDA-MB-231 ribosome profiling,Illumina HiSeq 2500,SRR7241910,27002674,1350133700\nPRJNA473989,SRX4147684,Illumina HiSeq 2500 sequencing; GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288722,C. elegans embryos ribosome profiling,Illumina HiSeq 2500,SRR7241911,76408239,3820411950\nPRJNA473989,SRX4147685,Illumina HiSeq 2500 sequencing; GSM3168389: HeLa ribosome profiling 1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168389: HeLa ribosome profiling 1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288721,HeLa ribosome profiling 1,Illumina HiSeq 2500,SRR7241912,53902947,2695147350\nPRJNA473989,SRX4147686,Illumina HiSeq 2500 sequencing; GSM3168390: HeLa ribosome profiling 2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168390: HeLa ribosome profiling 2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288720,HeLa ribosome profiling 2,Illumina HiSeq 2500,SRR7241913,45242293,2262114650\nPRJNA480953,SRX4387664,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,other,SAMN09652702,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517655,227390056,11369502800\nPRJNA480953,SRX4387663,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,other,SAMN09652704,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517656,287250155,14362507750\nPRJNA480953,SRX4387662,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SAMN09652701,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517657,162626902,8131345100\nPRJNA480953,SRX4387661,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SAMN09652703,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517658,146674049,7333702450\nPRJNA495919,SRX4870934,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type plus radicicol,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type plus radicicol,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234888,wild type plus RAD,NextSeq 500,SRR8040412,45205841,3435643916\nPRJNA495919,SRX4870932,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234887,wild type minus RAD,NextSeq 500,SRR8040414,24741340,1880341840\nPRJNA495919,SRX4870930,NextSeq 500 sequencing; Ribosome profiling of L. donovani HSP90rr plus radicicol,NextSeq 500 sequencing; Ribosome profiling of L. donovani HSP90rr plus radicicol,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234889,HSP90rr plus RAD,NextSeq 500,SRR8040416,28476385,2164205260\nPRJNA438895,SRX5075516,Illumina MiSeq sequencing; GSM3048762: ΔrrnIcomp - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048762: ΔrrnIcomp - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731684,ΔrrnIcomp - ribosome profiling data rep1,Illumina MiSeq,SRR8258332,5105532,183799152\nPRJNA438895,SRX5075517,Illumina MiSeq sequencing; GSM3048763: ΔrrnI - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048763: ΔrrnI - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731683,ΔrrnI - ribosome profiling data rep1,Illumina MiSeq,SRR8258333,5834528,210043008\nPRJNA438895,SRX5075520,Illumina MiSeq sequencing; GSM3048766: ΔrrnIcomp - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048766: ΔrrnIcomp - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731680,ΔrrnIcomp - ribosome profiling data rep2,Illumina MiSeq,SRR8258336,20039467,1022012817\nPRJNA438895,SRX5075521,Illumina MiSeq sequencing; GSM3048767: ΔrrnI - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048767: ΔrrnI - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731687,ΔrrnI - ribosome profiling data rep2,Illumina MiSeq,SRR8258337,26587915,1355983665\nPRJNA515289,SRX5252133,\"Illumina HiSeq 4000 sequencing; GSM3563711: HEK 293 cells, ribosome profiling, ctrl, Replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563711: HEK 293 cells, ribosome profiling, ctrl, Replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752247,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 1\",Illumina HiSeq 4000,SRR8445000,101076288,5154890688\nPRJNA515289,SRX5252134,\"Illumina HiSeq 4000 sequencing; GSM3563712: HEK 293 cells, ribosome profiling, ctrl, Replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563712: HEK 293 cells, ribosome profiling, ctrl, Replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752246,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 2\",Illumina HiSeq 4000,SRR8445001,96501939,4921598889\nPRJNA515289,SRX5252135,\"Illumina HiSeq 4000 sequencing; GSM3563713: HEK 293 cells, ribosome profiling, siDDX3, Replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563713: HEK 293 cells, ribosome profiling, siDDX3, Replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752245,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 1\",Illumina HiSeq 4000,SRR8445002,92758439,4730680389\nPRJNA515289,SRX5252136,\"Illumina HiSeq 4000 sequencing; GSM3563714: HEK 293 cells, ribosome profiling, siDDX3, Replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563714: HEK 293 cells, ribosome profiling, siDDX3, Replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752244,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 2\",Illumina HiSeq 4000,SRR8445003,92190382,4701709482\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870722,4000000,304000000\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870723,3768017,286369292\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870724,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870725,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870726,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870727,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870728,3877037,294654812\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870729,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870730,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870731,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870732,4000000,304000000\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870733,4000000,304000000\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870734,4000000,304000000\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870735,4000000,304000000\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870736,2117060,160896560\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870737,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870738,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870739,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870740,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870741,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870742,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870743,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870744,4000000,304000000\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870745,2436469,185171644\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870746,4000000,304000000\nPRJNA527204,SRX5525062,Illumina HiSeq 2500 sequencing; GSM3671680: ribosome profiling wt_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671680: ribosome profiling wt_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130407,ribosome profiling wt_1,Illumina HiSeq 2500,SRR8732200,18661991,933099550\nPRJNA527204,SRX5525063,Illumina HiSeq 2500 sequencing; GSM3671681: ribosome profiling wt_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671681: ribosome profiling wt_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130406,ribosome profiling wt_2,Illumina HiSeq 2500,SRR8732201,17636110,881805500\nPRJNA527204,SRX5525064,Illumina HiSeq 2500 sequencing; GSM3671682: ribosome profiling wt_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671682: ribosome profiling wt_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130405,ribosome profiling wt_3,Illumina HiSeq 2500,SRR8732202,23560878,1178043900\nPRJNA527204,SRX5525065,Illumina HiSeq 2500 sequencing; GSM3671683: ribosome profiling APP_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671683: ribosome profiling APP_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130404,ribosome profiling APP_1,Illumina HiSeq 2500,SRR8732203,22107235,1105361750\nPRJNA527204,SRX5525066,Illumina HiSeq 2500 sequencing; GSM3671684: ribosome profiling APP_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671684: ribosome profiling APP_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130403,ribosome profiling APP_2,Illumina HiSeq 2500,SRR8732204,18895655,944782750\nPRJNA527204,SRX5525067,Illumina HiSeq 2500 sequencing; GSM3671685: ribosome profiling APP_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671685: ribosome profiling APP_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130402,ribosome profiling APP_3,Illumina HiSeq 2500,SRR8732205,20817886,1040894300\nPRJNA527204,SRX5525068,Illumina HiSeq 2500 sequencing; GSM3671686: ribosome profiling PSEN_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671686: ribosome profiling PSEN_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130401,ribosome profiling PSEN_1,Illumina HiSeq 2500,SRR8732206,20629961,1031498050\nPRJNA527204,SRX5525069,Illumina HiSeq 2500 sequencing; GSM3671687: ribosome profiling PSEN_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671687: ribosome profiling PSEN_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130400,ribosome profiling PSEN_2,Illumina HiSeq 2500,SRR8732207,20358650,1017932500\nPRJNA527204,SRX5525070,Illumina HiSeq 2500 sequencing; GSM3671688: ribosome profiling PSEN_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671688: ribosome profiling PSEN_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130427,ribosome profiling PSEN_3,Illumina HiSeq 2500,SRR8732208,20652398,1032619900\nPRJNA527204,SRX5525071,Illumina HiSeq 2500 sequencing; GSM3671689: ribosome profiling APP/PSEN1_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671689: ribosome profiling APP/PSEN1_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130426,ribosome profiling APP/PSEN1_1,Illumina HiSeq 2500,SRR8732209,21629538,1081476900\nPRJNA527204,SRX5525072,Illumina HiSeq 2500 sequencing; GSM3671690: ribosome profiling APP/PSEN1_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671690: ribosome profiling APP/PSEN1_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130425,ribosome profiling APP/PSEN1_2,Illumina HiSeq 2500,SRR8732210,22115725,1105786250\nPRJNA527204,SRX5525073,Illumina HiSeq 2500 sequencing; GSM3671691: ribosome profiling APP/PSEN1_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671691: ribosome profiling APP/PSEN1_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130424,ribosome profiling APP/PSEN1_3,Illumina HiSeq 2500,SRR8732211,26892978,1344648900\nPRJNA544411,SRX5887326,\"Illumina HiSeq 4000 sequencing; GSM3791723: iPSC ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791723: iPSC ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835522,\"iPSC ribosome profiling, harringtonine-treated\",Illumina HiSeq 4000,SRR9113062,131541396,3743828156\nPRJNA544411,SRX5887327,\"Illumina HiSeq 4000 sequencing; GSM3791724: Cardiomyocyte ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791724: Cardiomyocyte ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835521,\"Cardiomyocyte ribosome profiling, harringtonine-treated\",Illumina HiSeq 4000,SRR9113063,105449435,2785265458\nPRJNA544411,SRX5887328,\"Illumina HiSeq 4000 sequencing; GSM3791725: iPSC ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791725: iPSC ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835520,\"iPSC ribosome profiling, no drug treatment, replicate 1\",Illumina HiSeq 4000,SRR9113064,52479474,1453634111\nPRJNA544411,SRX5887329,\"Illumina HiSeq 4000 sequencing; GSM3791726: iPSC ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791726: iPSC ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835519,\"iPSC ribosome profiling, no drug treatment, replicate 2\",Illumina HiSeq 4000,SRR9113065,51856183,1508584022\nPRJNA544411,SRX5887330,\"Illumina HiSeq 4000 sequencing; GSM3791727: iPSC ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791727: iPSC ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835518,\"iPSC ribosome profiling, no drug treatment, replicate 3\",Illumina HiSeq 4000,SRR9113066,44471589,1280127923\nPRJNA544411,SRX5887331,\"Illumina HiSeq 4000 sequencing; GSM3791728: Cardiomyocyte ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791728: Cardiomyocyte ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835517,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 1\",Illumina HiSeq 4000,SRR9113067,15031439,395105326\nPRJNA544411,SRX5887332,\"Illumina HiSeq 4000 sequencing; GSM3791729: Cardiomyocyte ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791729: Cardiomyocyte ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835516,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 2\",Illumina HiSeq 4000,SRR9113068,24288824,668239583\nPRJNA544411,SRX5887333,\"Illumina HiSeq 4000 sequencing; GSM3791730: Cardiomyocyte ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791730: Cardiomyocyte ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835515,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 3\",Illumina HiSeq 4000,SRR9113069,22387751,602037992\nPRJNA548255,SRX6035778,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265420,52416789,1560616477\nPRJNA548255,SRX6035777,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265421,55952924,1711205789\nPRJNA548255,SRX6035776,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265422,49583723,1502676985\nPRJNA548255,SRX6035775,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265423,58906924,1740811245\nPRJNA548255,SRX6035774,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265424,45951630,1310462981\nPRJNA548255,SRX6035773,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265425,47383970,1423177661\nPRJNA548255,SRX6035772,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265426,42590657,1193803088\nPRJNA548255,SRX6035771,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265427,66588117,2042292918\nPRJNA548255,SRX6035769,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265429,38286437,1148214684\nPRJNA548255,SRX6035759,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265438,56609448,1597658464\nPRJNA548255,SRX6035757,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265440,32328045,953362959\nPRJNA213675,SRX329059,Illumina HiSeq 2000 sequencing; GSM1197612: Ribosome profiling rep1-SiControl-RPF C1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1197612: Ribosome profiling rep1-SiControl-RPF C1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02297657,Ribosome profiling rep1-SiControl-RPF C1,Illumina HiSeq 2000,SRR944653,29565498,2956549800\nPRJNA213675,SRX329060,Illumina HiSeq 2000 sequencing; GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02297660,Ribosome profiling rep1-SiControl-input-polyA C2,Illumina HiSeq 2000,SRR944654,62803902,6280390200\nPRJNA213675,SRX329061,Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02297661,Ribosome profiling rep1-SiYTHDF2-RPF C3,Illumina HiSeq 2000,SRR944655,26371551,2637155100\n"
  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_2.json",
    "content": "[{\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264364\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"description\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"sample_accession\": \"SAMEA3708907\", \"sample_title\": \"Sample 1\", \"instrument_model\": \"Illumina HiSeq 2000\", \"run_accession\": \"ERR1190989\", \"read_count\": \"38883498\", \"base_count\": \"1161289538\", \"first_public\": \"2016-02-08\", \"library_layout\": \"SINGLE\", \"instrument_platform\": \"ILLUMINA\"}, {\"study_accession\": \"PRJEB12126\", \"experiment_accession\": \"ERX1264365\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; 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  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_3.csv",
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Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016058,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/001/ERR1190991,1332847226,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1190991,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1190991,98df90accff50e575b2bb2431f109512,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190991/sample_11.fq.gz,1427842939,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190991/sample_11.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190991/sample_11.fq.gz,<NA>,fa614ffc148689a0e8266afd4320192e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264367,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708910,Sample 12,Illumina HiSeq 2000,ERR1190992,78497711,2489092061,SAMEA3708910,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 12,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1190992/ERR1190992.fastq.gz,2220963756,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1190992/ERR1190992.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1190992/ERR1190992.fastq.gz,2edb49df7be0c15b785e89f4c41ddcf2,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 12,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 12,<NA>,E-MTAB-4111:Sample 12,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016059,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/002/ERR1190992,1909616007,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1190992,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1190992,f4f3f8acfc07a286f47710ebd8d8faa3,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190992/sample_12.fq.gz,1984919544,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190992/sample_12.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190992/sample_12.fq.gz,<NA>,023d007cd36eca91bf65fb940666fb48,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264368,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708911,Sample 13,Illumina HiSeq 2000,ERR1190993,84955423,2627276298,SAMEA3708911,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 13,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1190993/ERR1190993.fastq.gz,2552783402,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1190993/ERR1190993.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1190993/ERR1190993.fastq.gz,4c9b92304199100be89710b362a059d4,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 13,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 13,<NA>,E-MTAB-4111:Sample 13,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016060,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/003/ERR1190993,2041075242,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1190993,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1190993,11a8ad15b7b301bd54cbc22b6dda19b5,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190993/sample_13.fq.gz,2295593342,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190993/sample_13.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190993/sample_13.fq.gz,<NA>,b50b57061d2f520a458de1f95c61753a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264369,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708912,Sample 14,Illumina HiSeq 2000,ERR1190994,75097651,2293097872,SAMEA3708912,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 14,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1190994/ERR1190994.fastq.gz,2253968208,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1190994/ERR1190994.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1190994/ERR1190994.fastq.gz,6d050a4b42639848a784a3e21c49248b,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 14,<NA>,E-MTAB-4111:Sample 14,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016061,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/004/ERR1190994,1790148639,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1190994,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1190994,abd24ffc6ebb0dbf086de7af272239cd,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190994/sample_14.fq.gz,2025533568,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190994/sample_14.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190994/sample_14.fq.gz,<NA>,66e310243e5c0a8b507de4d74a1a7ae3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264370,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708913,Sample 15,Illumina HiSeq 2000,ERR1190995,67177553,2060926619,SAMEA3708913,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 15,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1190995/ERR1190995.fastq.gz,2104874167,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1190995/ERR1190995.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1190995/ERR1190995.fastq.gz,125b6677cddeb17960f81f7af310b057,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 15,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 15,<NA>,E-MTAB-4111:Sample 15,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016062,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/005/ERR1190995,1631544238,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1190995,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1190995,8bc88ec81d681e8061e66fd4159f6cf6,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190995/sample_15.fq.gz,1899642594,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190995/sample_15.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190995/sample_15.fq.gz,<NA>,3a3e9867381f2ea48d1d05e893653b94,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264371,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708914,Sample 16,Illumina HiSeq 2000,ERR1190996,62940694,2061757111,SAMEA3708914,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 16,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1190996/ERR1190996.fastq.gz,2082203724,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1190996/ERR1190996.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1190996/ERR1190996.fastq.gz,1ee18cd6e209d1bdb7b642a120881f3f,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 16,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 16,<NA>,E-MTAB-4111:Sample 16,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016063,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/006/ERR1190996,1610743957,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1190996,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1190996,6e13c879e603fd67b09e36c739c27087,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190996/sample_16.fq.gz,1890642373,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190996/sample_16.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190996/sample_16.fq.gz,<NA>,9221dd53a73c1fcdbde047950278aad7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264372,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708915,Sample 17,Illumina HiSeq 2000,ERR1190997,80591061,2475034240,SAMEA3708915,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 17,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1190997/ERR1190997.fastq.gz,2406895127,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1190997/ERR1190997.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1190997/ERR1190997.fastq.gz,8cb8ae554f44ba1d78613f273f397021,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 17,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 17,<NA>,E-MTAB-4111:Sample 17,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016064,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/007/ERR1190997,1908102168,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1190997,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1190997,c4f1bb4a2fa95e6b34f5bb061d4e85b8,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190997/sample_17.fq.gz,2162207875,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190997/sample_17.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190997/sample_17.fq.gz,<NA>,75acec50d70831728043119b9da063ad,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264373,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708916,Sample 18,Illumina HiSeq 2000,ERR1190998,68575621,2149386138,SAMEA3708916,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 18,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1190998/ERR1190998.fastq.gz,2105063166,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1190998/ERR1190998.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1190998/ERR1190998.fastq.gz,67aeca982e478564bd253865fc7a766c,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 18,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 18,<NA>,E-MTAB-4111:Sample 18,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016065,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/008/ERR1190998,1673112882,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1190998,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1190998,9c855553edd8015483826226f0e454df,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190998/sample_18.fq.gz,1896924035,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190998/sample_18.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190998/sample_18.fq.gz,<NA>,b2b559e0b4440f9c0bf6876f1b98428d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264374,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708917,Sample 19,Illumina HiSeq 2000,ERR1190999,59543450,1840946911,SAMEA3708917,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 19,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1190999/ERR1190999.fastq.gz,1849353625,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1190999/ERR1190999.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1190999/ERR1190999.fastq.gz,b882b08b070548aeda29798236ae9748,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 19,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 19,<NA>,E-MTAB-4111:Sample 19,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016066,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/009/ERR1190999,2502027026,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1190999,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1190999,a37fd463a68c6e684a37082e9a50764e,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190999/sample_19.fq.gz,1642503565,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190999/sample_19.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190999/sample_19.fq.gz,<NA>,40b79160ef0e73cb5b9259e6ce9cdbf6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264375,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708918,Sample 2,Illumina HiSeq 2000,ERR1191000,48420348,1429402558,SAMEA3708918,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1191000/ERR1191000.fastq.gz,1486205806,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191000/ERR1191000.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191000/ERR1191000.fastq.gz,cc362c5676dd6906ee40a18e191a3f6e,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 2,<NA>,E-MTAB-4111:Sample 2,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016067,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/000/ERR1191000,1126300261,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191000,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191000,2a5d2bd5e5f7025ee9ca6f84623ffeb4,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191000/sample_2.fq.gz,1339301011,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191000/sample_2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191000/sample_2.fq.gz,<NA>,7b69d69117d5183d3dc09efb4c94f3b4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264376,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708919,Sample 20,Illumina HiSeq 2000,ERR1191001,39413642,1197490271,SAMEA3708919,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 20,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191001/ERR1191001.fastq.gz,1141288041,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191001/ERR1191001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191001/ERR1191001.fastq.gz,787ad729d733f2a27ac88b294831886f,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 20,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 20,<NA>,E-MTAB-4111:Sample 20,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016068,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/001/ERR1191001,1605804992,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191001,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191001,bee621a67c007d8c973fe4ee913834df,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191001/sample_20.fq.gz,1007509886,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191001/sample_20.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191001/sample_20.fq.gz,<NA>,83ef3dda9bcfe546ad1ad337a7324b24,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264377,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708920,Sample 21,Illumina HiSeq 2000,ERR1191002,43109202,1310217152,SAMEA3708920,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 21,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1191002/ERR1191002.fastq.gz,1239735906,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191002/ERR1191002.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191002/ERR1191002.fastq.gz,6f4f6a9287936464f800713018cd20d6,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 21,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 21,<NA>,E-MTAB-4111:Sample 21,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016069,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/002/ERR1191002,1739389406,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191002,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191002,4df6f3214d933fbd18381d4918bce059,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191002/sample_21.fq.gz,1092021312,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191002/sample_21.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191002/sample_21.fq.gz,<NA>,86273e2401b4193dd9e044528da23737,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264378,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708921,Sample 22,Illumina HiSeq 2000,ERR1191003,48048678,1464094378,SAMEA3708921,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 22,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191003/ERR1191003.fastq.gz,1357313096,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191003/ERR1191003.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191003/ERR1191003.fastq.gz,cef8cd38a28ac5472337fdd7d954670f,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 22,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 22,<NA>,E-MTAB-4111:Sample 22,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016070,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/003/ERR1191003,1962593928,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191003,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191003,29faace51726dedcc4cfe90d24ac57b8,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191003/sample_22.fq.gz,1193034122,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191003/sample_22.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191003/sample_22.fq.gz,<NA>,da5cbe40b5f33f4ea7be71dfd6517939,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264379,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708922,Sample 23,Illumina HiSeq 2000,ERR1191004,55458988,1762359654,SAMEA3708922,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 23,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1191004/ERR1191004.fastq.gz,1582844288,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191004/ERR1191004.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191004/ERR1191004.fastq.gz,9e6e4bf2a2fefee8a950da6c45b5d56e,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 23,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 23,<NA>,E-MTAB-4111:Sample 23,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016071,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/004/ERR1191004,2308370862,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191004,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191004,f45389510ca23ad73806c9df445ca1dc,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191004/sample_23.fq.gz,1391504392,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191004/sample_23.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191004/sample_23.fq.gz,<NA>,bc935a775c9af96f365a07cc2a50272e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264380,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708923,Sample 24,Illumina HiSeq 2000,ERR1191005,47426381,1463185679,SAMEA3708923,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 24,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191005/ERR1191005.fastq.gz,1447507751,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191005/ERR1191005.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191005/ERR1191005.fastq.gz,c8eb21287506e80e971947e50fdd6090,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 24,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 24,<NA>,E-MTAB-4111:Sample 24,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016072,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/005/ERR1191005,1945207335,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191005,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191005,fb668c85ce592f96208c6f6c2d5f59a1,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191005/sample_24.fq.gz,1284098890,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191005/sample_24.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191005/sample_24.fq.gz,<NA>,c743b40f8d67881847f75110a2054be1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264381,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708924,Sample 25,Illumina HiSeq 2000,ERR1191006,53368431,1671809961,SAMEA3708924,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 25,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1191006/ERR1191006.fastq.gz,1602355593,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191006/ERR1191006.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191006/ERR1191006.fastq.gz,d12cc91b5aaea781d3826471df591fd7,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 25,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 25,<NA>,E-MTAB-4111:Sample 25,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016073,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/006/ERR1191006,2251645247,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191006,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191006,dd25784a85ba684ae712269c45f1a825,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191006/sample_25.fq.gz,1419230073,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191006/sample_25.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191006/sample_25.fq.gz,<NA>,45be74f821d5feebd3884f206e88fff0,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264382,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708925,Sample 26,Illumina HiSeq 2000,ERR1191007,63008359,1879252598,SAMEA3708925,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 26,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191007/ERR1191007.fastq.gz,1777894174,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191007/ERR1191007.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191007/ERR1191007.fastq.gz,5890bccd90637255bb7f74b5007a8b2a,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 26,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 26,<NA>,E-MTAB-4111:Sample 26,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016074,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/007/ERR1191007,2545066040,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191007,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191007,6a6152aa872fd53ca33cc659e4ce8b40,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191007/sample_26.fq.gz,1563700433,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191007/sample_26.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191007/sample_26.fq.gz,<NA>,47b17b647455ce2719134860b2850738,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264383,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708926,Sample 27,Illumina HiSeq 2000,ERR1191008,54398154,1665685103,SAMEA3708926,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 27,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1191008/ERR1191008.fastq.gz,1522964619,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191008/ERR1191008.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191008/ERR1191008.fastq.gz,8272c34e6eaf0ef3237f6bbd4db5ea00,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 27,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 27,<NA>,E-MTAB-4111:Sample 27,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016075,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/008/ERR1191008,2186751978,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191008,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191008,3a466c0cd79c8b2d210cd884ff0fbdd7,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191008/sample_27.fq.gz,1337240873,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191008/sample_27.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191008/sample_27.fq.gz,<NA>,7a3ac0c73cf7965f5f923913e8fe9bac,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264384,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708927,Sample 28,Illumina HiSeq 2000,ERR1191009,60588893,1898719877,SAMEA3708927,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 28,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191009/ERR1191009.fastq.gz,1753873588,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191009/ERR1191009.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191009/ERR1191009.fastq.gz,39bcbd18c110cfc9ffec625fb6e686a2,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 28,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 28,<NA>,E-MTAB-4111:Sample 28,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016076,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/009/ERR1191009,2488581123,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1191009,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1191009,48361580974064dad2ae0ec9d114be07,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191009/sample_28.fq.gz,1543882466,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191009/sample_28.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191009/sample_28.fq.gz,<NA>,db51ab8f81a223a5cb508f5b30cf54cd,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264385,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708928,Sample 29,Illumina HiSeq 2000,ERR1191010,51322850,1636915300,SAMEA3708928,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 29,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1191010/ERR1191010.fastq.gz,1486538345,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191010/ERR1191010.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191010/ERR1191010.fastq.gz,eb3069fd56f66c306bc2cc691566f913,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 29,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 29,<NA>,E-MTAB-4111:Sample 29,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016077,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/000/ERR1191010,2130483818,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191010,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191010,b00ddc4df80690f60bb938f77d537fe5,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191010/sample_29.fq.gz,1308219057,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191010/sample_29.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191010/sample_29.fq.gz,<NA>,da28d91910441e2346dc66138bef13d9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264386,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708929,Sample 3,Illumina HiSeq 2000,ERR1191011,51075405,1550469279,SAMEA3708929,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191011/ERR1191011.fastq.gz,1590752820,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191011/ERR1191011.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191011/ERR1191011.fastq.gz,af410b9267ab7d486027d74de292c082,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 3,<NA>,E-MTAB-4111:Sample 3,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016078,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/001/ERR1191011,1238674308,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191011,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191011,cc132945ba293515e8faa5a81969024d,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191011/sample_3.fq.gz,1436625037,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191011/sample_3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191011/sample_3.fq.gz,<NA>,0349e1e38f4fcd0ead4cbccde82cc83c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264387,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708930,Sample 30,Illumina HiSeq 2000,ERR1191012,68573681,2176015649,SAMEA3708930,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 30,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1191012/ERR1191012.fastq.gz,2027489100,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191012/ERR1191012.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191012/ERR1191012.fastq.gz,79afb9440724de715d1469f78f456131,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 30,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 30,<NA>,E-MTAB-4111:Sample 30,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016079,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/002/ERR1191012,2830391998,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191012,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191012,a6b4a2e7c8b94eb67755d21a611eb2a4,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191012/sample_30.fq.gz,1790233662,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191012/sample_30.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191012/sample_30.fq.gz,<NA>,5525b842763c6363457bec6de5b27d3f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264388,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708931,Sample 31,Illumina HiSeq 2000,ERR1191013,67660607,2053109515,SAMEA3708931,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 31,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191013/ERR1191013.fastq.gz,2012242869,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191013/ERR1191013.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191013/ERR1191013.fastq.gz,c62be9cb3dfba3da0d97581f5b3c5892,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 31,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 31,<NA>,E-MTAB-4111:Sample 31,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016080,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/003/ERR1191013,2805301114,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191013,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191013,e26e3534a6895a612c62adc2fc0c33f1,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191013/sample_31.fq.gz,1781942533,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191013/sample_31.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191013/sample_31.fq.gz,<NA>,83b0e4910698bf1e56805fdf3b1fc096,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264389,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708932,Sample 32,Illumina HiSeq 2000,ERR1191014,79400383,2502665973,SAMEA3708932,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 32,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1191014/ERR1191014.fastq.gz,2431896210,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191014/ERR1191014.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191014/ERR1191014.fastq.gz,6334994ef89af6e331dcd8d6ad465085,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 32,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 32,<NA>,E-MTAB-4111:Sample 32,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016081,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/004/ERR1191014,3257300205,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191014,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191014,881976478b1b30fe14d9ab0d1e7bbee8,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191014/sample_32.fq.gz,2160091413,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191014/sample_32.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191014/sample_32.fq.gz,<NA>,15012bb2b07a0aee12516719e259c25b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264390,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708933,Sample 33,Illumina HiSeq 2000,ERR1191015,65832767,2077595830,SAMEA3708933,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 33,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191015/ERR1191015.fastq.gz,2070910806,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191015/ERR1191015.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191015/ERR1191015.fastq.gz,6f2a68b4d7dcd0a32fbb5bef07c08bbd,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 33,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 33,<NA>,E-MTAB-4111:Sample 33,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016082,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/005/ERR1191015,2659209451,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191015,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191015,5ee490d45864065bd0c0ec0dbae21cec,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191015/sample_33.fq.gz,1843275407,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191015/sample_33.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191015/sample_33.fq.gz,<NA>,87d67939ec0ac27d90f1298b6ba2245e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264391,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708934,Sample 34,Illumina HiSeq 2000,ERR1191016,65880576,2068785301,SAMEA3708934,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 34,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1191016/ERR1191016.fastq.gz,2120284424,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191016/ERR1191016.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191016/ERR1191016.fastq.gz,80a690f7967284ffac227b2637d3b6ed,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 34,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 34,<NA>,E-MTAB-4111:Sample 34,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016083,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/006/ERR1191016,2696199926,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191016,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191016,9a2660f7d60b07cd5fa9b1dc3900fb3c,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191016/sample_34.fq.gz,1892977218,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191016/sample_34.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191016/sample_34.fq.gz,<NA>,ae7a1f86ea12281b74aec3fdb38fa395,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264392,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708935,Sample 35,Illumina HiSeq 2000,ERR1191017,45934156,1461586536,SAMEA3708935,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 35,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191017/ERR1191017.fastq.gz,1353976017,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191017/ERR1191017.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191017/ERR1191017.fastq.gz,9585abc09fdaf0f4bd1bf157326967eb,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 35,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 35,<NA>,E-MTAB-4111:Sample 35,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016084,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/007/ERR1191017,1896513293,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191017,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191017,8fda104bcbe4de59ab89ad5407169f57,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191017/sample_35.fq.gz,1197236441,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191017/sample_35.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191017/sample_35.fq.gz,<NA>,b17f71f7bf6a6e5c5a5769547aabc661,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264393,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708936,Sample 36,Illumina HiSeq 2000,ERR1191018,62115857,1934185771,SAMEA3708936,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 36,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1191018/ERR1191018.fastq.gz,1857288901,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191018/ERR1191018.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191018/ERR1191018.fastq.gz,ad00da99b68a6ee63d49af56b792e7c7,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 36,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 36,<NA>,E-MTAB-4111:Sample 36,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016085,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/008/ERR1191018,2520416726,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191018,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191018,97afafedc5da93fdbbbb7654b4ef82c3,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191018/sample_36.fq.gz,1644311147,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191018/sample_36.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191018/sample_36.fq.gz,<NA>,17414093b819e27c0ce20b202427e6cc,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264394,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708937,Sample 37,Illumina HiSeq 2000,ERR1191019,56038006,1696854260,SAMEA3708937,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 37,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1191019/ERR1191019.fastq.gz,1755886457,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191019/ERR1191019.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1191019/ERR1191019.fastq.gz,be79206b59e20c9a25857fefcde8dbb3,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 37,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 37,<NA>,E-MTAB-4111:Sample 37,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016086,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/009/ERR1191019,2324169926,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1191019,ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1191019,f9a345535a5fa855ae6d7095402e3970,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191019/sample_37.fq.gz,1564888687,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191019/sample_37.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191019/sample_37.fq.gz,<NA>,f7ca496d49e5cff15b940d108753fd7f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264395,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708938,Sample 38,Illumina HiSeq 2000,ERR1191020,50038369,1585387757,SAMEA3708938,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 38,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/000/ERR1191020/ERR1191020.fastq.gz,1509235624,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191020/ERR1191020.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/000/ERR1191020/ERR1191020.fastq.gz,355dd641e453e5ca871646ad77efcea3,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 38,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 38,<NA>,E-MTAB-4111:Sample 38,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016087,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/000/ERR1191020,2115107355,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191020,ftp.sra.ebi.ac.uk/vol1/err/ERR119/000/ERR1191020,3855e4dd818fa217bf5cb5a7bf6b0b9a,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191020/sample_38.fq.gz,1337496712,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191020/sample_38.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191020/sample_38.fq.gz,<NA>,8b5b9fc0caae885ffd5d09e48c7fecd4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264396,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA3708939,Sample 39,Illumina HiSeq 2000,ERR1191021,82282313,2638880669,SAMEA3708939,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 39,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/001/ERR1191021/ERR1191021.fastq.gz,2540452181,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191021/ERR1191021.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/001/ERR1191021/ERR1191021.fastq.gz,bda5b21fff30a47b6929f2f2023425e2,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 39,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 39,<NA>,E-MTAB-4111:Sample 39,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016088,ERP013565,RNASeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/001/ERR1191021,3394960101,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191021,ftp.sra.ebi.ac.uk/vol1/err/ERR119/001/ERR1191021,d51343ffb1cef4dbb459cdb33082e598,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191021/sample_39.fq.gz,2258671903,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191021/sample_39.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191021/sample_39.fq.gz,<NA>,6fed3e69c73767a36bdb02c3407254cf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264397,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708940,Sample 4,Illumina HiSeq 2000,ERR1191022,63170089,2044068461,SAMEA3708940,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 4,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/002/ERR1191022/ERR1191022.fastq.gz,1821948135,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191022/ERR1191022.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/002/ERR1191022/ERR1191022.fastq.gz,41aa148a1806adabdea66f2596872b8b,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 4,<NA>,E-MTAB-4111:Sample 4,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016089,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/002/ERR1191022,1601578940,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191022,ftp.sra.ebi.ac.uk/vol1/err/ERR119/002/ERR1191022,e128180afc489283025692bdfdfb445a,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191022/sample_4.fq.gz,1637538599,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191022/sample_4.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191022/sample_4.fq.gz,<NA>,a227f514c1cd0f5233cae18945ba73f0,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264398,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708941,Sample 40,Illumina HiSeq 2000,ERR1191023,76077975,3120456466,SAMEA3708941,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 40,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/003/ERR1191023/ERR1191023.fastq.gz,2651414559,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191023/ERR1191023.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/003/ERR1191023/ERR1191023.fastq.gz,de907d29d9197af82b0e202c1d2e88db,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 40,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 40,<NA>,E-MTAB-4111:Sample 40,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016090,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/003/ERR1191023,3756169072,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191023,ftp.sra.ebi.ac.uk/vol1/err/ERR119/003/ERR1191023,d42fd900183d840b865863e124305edd,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191023/sample_40.fq.gz,2388267629,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191023/sample_40.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191023/sample_40.fq.gz,<NA>,4532c47d9a0510c643863a5ae417a5b2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264399,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708942,Sample 5,Illumina HiSeq 2000,ERR1191024,38540171,1192143682,SAMEA3708942,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 5,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/004/ERR1191024/ERR1191024.fastq.gz,1192911261,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191024/ERR1191024.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/004/ERR1191024/ERR1191024.fastq.gz,1d7574ce44c781a4c868dacbfb841893,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 5,<NA>,E-MTAB-4111:Sample 5,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016091,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/004/ERR1191024,930675946,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191024,ftp.sra.ebi.ac.uk/vol1/err/ERR119/004/ERR1191024,5b569950e11b3c769c5b087da44f4b3f,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191024/sample_5.fq.gz,1078055632,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191024/sample_5.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191024/sample_5.fq.gz,<NA>,4dc16b0f6a8c84a17fe38e0386e80dbe,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264400,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708943,Sample 6,Illumina HiSeq 2000,ERR1191025,27122370,839903135,SAMEA3708943,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 6,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/005/ERR1191025/ERR1191025.fastq.gz,864566366,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191025/ERR1191025.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/005/ERR1191025/ERR1191025.fastq.gz,5b88a3746732c352f9b668d26be0b0c2,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 6,<NA>,E-MTAB-4111:Sample 6,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016092,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/005/ERR1191025,661628933,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191025,ftp.sra.ebi.ac.uk/vol1/err/ERR119/005/ERR1191025,fd1bc249a76fcea9e7df10b2c759832c,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191025/sample_6.fq.gz,783523472,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191025/sample_6.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191025/sample_6.fq.gz,<NA>,671d6907041a3b8c39d29af063fbc0d5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264401,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708944,Sample 7,Illumina HiSeq 2000,ERR1191026,52888637,1629947931,SAMEA3708944,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 7,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/006/ERR1191026/ERR1191026.fastq.gz,1628603632,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191026/ERR1191026.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/006/ERR1191026/ERR1191026.fastq.gz,8445cf7dfee54be87fcffa6c449f5a20,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 7,<NA>,E-MTAB-4111:Sample 7,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016093,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/006/ERR1191026,1288626489,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191026,ftp.sra.ebi.ac.uk/vol1/err/ERR119/006/ERR1191026,11cba143ba3b6bd6810ab95984c9f827,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191026/sample_7.fq.gz,1467714303,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191026/sample_7.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191026/sample_7.fq.gz,<NA>,899744746c051635a5532981d60abd1d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264402,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708945,Sample 8,Illumina HiSeq 2000,ERR1191027,47240129,1457468497,SAMEA3708945,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 8,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/007/ERR1191027/ERR1191027.fastq.gz,1464475125,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191027/ERR1191027.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/007/ERR1191027/ERR1191027.fastq.gz,3b737aded7057f76f036867773cf6f15,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 8,<NA>,E-MTAB-4111:Sample 8,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016094,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/007/ERR1191027,1148039809,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191027,ftp.sra.ebi.ac.uk/vol1/err/ERR119/007/ERR1191027,62e6e13e173547cac37908435a906aa2,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191027/sample_8.fq.gz,1319898533,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191027/sample_8.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191027/sample_8.fq.gz,<NA>,759076aeedba29d5122490011fa4481f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB12126,ERX1264403,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA3708946,Sample 9,Illumina HiSeq 2000,ERR1191028,58914298,1823035475,SAMEA3708946,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,17-Cl1,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-4111:Sample 9,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/008/ERR1191028/ERR1191028.fastq.gz,1799861171,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191028/ERR1191028.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/008/ERR1191028/ERR1191028.fastq.gz,a782b1d1fa098137d2e4af3f9af7bfeb,2015-12-14,2016-02-08,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-4111:Sample 9,<NA>,E-MTAB-4111:Sample 9,<NA>,\"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 oC, the supernatants recovered and sto\",<NA>,<NA>,<NA>,<NA>,ERS1016095,ERP013565,RiboSeq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR119/008/ERR1191028,1442864149,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191028,ftp.sra.ebi.ac.uk/vol1/err/ERR119/008/ERR1191028,2e50dd4483885797c3d040fe85a76d4c,<NA>,E-MTAB-4111,Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA542783,fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1191028/sample_9.fq.gz,1619624159,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191028/sample_9.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1191028/sample_9.fq.gz,<NA>,bd7614dfcbdda387485a1ba2adc411e1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789731,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534046,Sample 1,Illumina HiSeq 2000,ERR1719518,41599973,1375854749,SAMEA4534046,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/008/ERR1719518/ERR1719518.fastq.gz,1008609000,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/008/ERR1719518/ERR1719518.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/008/ERR1719518/ERR1719518.fastq.gz,25387b8619161645bb17d6b304dcc570,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 1,<NA>,E-MTAB-5206:Sample 1,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433225,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/008/ERR1719518,1721608527,ftp.sra.ebi.ac.uk/vol1/err/ERR171/008/ERR1719518,ftp.sra.ebi.ac.uk/vol1/err/ERR171/008/ERR1719518,296c9fe5aefbbdfb5a67f03e702df3c6,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719518/sample_1.fq.gz,872679569,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719518/sample_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719518/sample_1.fq.gz,<NA>,8277c093b80adbd0514b7cd6edaa0b6d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789732,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534047,Sample 10,NextSeq 500,ERR1719519,23069695,740677911,SAMEA4534047,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 10_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/009/ERR1719519/ERR1719519.fastq.gz,458231375,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/009/ERR1719519/ERR1719519.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/009/ERR1719519/ERR1719519.fastq.gz,d37bb2c302934b7b25e204821ec15ecd,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 10_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 10,<NA>,E-MTAB-5206:Sample 10,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433226,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/009/ERR1719519,410162104,ftp.sra.ebi.ac.uk/vol1/err/ERR171/009/ERR1719519,ftp.sra.ebi.ac.uk/vol1/err/ERR171/009/ERR1719519,4927259a6f290ce6dfb902d462e2d17e,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719519/sample_10.fq.gz,394444293,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719519/sample_10.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719519/sample_10.fq.gz,<NA>,2c7274a10e255b56cdb0422573e795d5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789733,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534048,Sample 11,NextSeq 500,ERR1719520,29010875,922672397,SAMEA4534048,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/000/ERR1719520/ERR1719520.fastq.gz,571720642,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/000/ERR1719520/ERR1719520.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/000/ERR1719520/ERR1719520.fastq.gz,3e4b34c0fa86510d02fc2c715dd7cd34,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 11,<NA>,E-MTAB-5206:Sample 11,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433227,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/000/ERR1719520,511639505,ftp.sra.ebi.ac.uk/vol1/err/ERR171/000/ERR1719520,ftp.sra.ebi.ac.uk/vol1/err/ERR171/000/ERR1719520,2b413b2772d7646eeb6e2179efab7627,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719520/sample_11.fq.gz,491194232,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719520/sample_11.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719520/sample_11.fq.gz,<NA>,70102d6e6894193ae62bd8b041547498,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789734,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534049,Sample 12,NextSeq 500,ERR1719521,30202884,976358769,SAMEA4534049,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 12_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/001/ERR1719521/ERR1719521.fastq.gz,610917361,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/001/ERR1719521/ERR1719521.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/001/ERR1719521/ERR1719521.fastq.gz,be245f1204beb717807d43116c5172ea,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 12_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 12,<NA>,E-MTAB-5206:Sample 12,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433228,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/001/ERR1719521,537625182,ftp.sra.ebi.ac.uk/vol1/err/ERR171/001/ERR1719521,ftp.sra.ebi.ac.uk/vol1/err/ERR171/001/ERR1719521,d94e73606808be9fe2a048f2a664f611,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719521/sample_12.fq.gz,527204938,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719521/sample_12.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719521/sample_12.fq.gz,<NA>,5974f783c47ad69a0b2fdf52bc89a213,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789735,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534050,Sample 13,NextSeq 500,ERR1719522,19815295,629646715,SAMEA4534050,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/002/ERR1719522/ERR1719522.fastq.gz,406709306,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/002/ERR1719522/ERR1719522.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/002/ERR1719522/ERR1719522.fastq.gz,b2521d97a5aeabe6a7de5bc9b549c959,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 13,<NA>,E-MTAB-5206:Sample 13,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433229,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/002/ERR1719522,356680454,ftp.sra.ebi.ac.uk/vol1/err/ERR171/002/ERR1719522,ftp.sra.ebi.ac.uk/vol1/err/ERR171/002/ERR1719522,30f278013c0d9fe683aaca6ac27d393d,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719522/sample_13.fq.gz,351825253,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719522/sample_13.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719522/sample_13.fq.gz,<NA>,a2195232b0d14f3c63cd1941979679c1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789736,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534051,Sample 14,NextSeq 500,ERR1719523,37199064,1177627544,SAMEA4534051,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 14_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/003/ERR1719523/ERR1719523.fastq.gz,731365330,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/003/ERR1719523/ERR1719523.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/003/ERR1719523/ERR1719523.fastq.gz,6405c3025eda517feca5c7c9dcb6a895,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 14_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 14,<NA>,E-MTAB-5206:Sample 14,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433230,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/003/ERR1719523,645254517,ftp.sra.ebi.ac.uk/vol1/err/ERR171/003/ERR1719523,ftp.sra.ebi.ac.uk/vol1/err/ERR171/003/ERR1719523,87a514676c98b93bb5a7580bc7ffa536,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719523/sample_14.fq.gz,628202566,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719523/sample_14.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719523/sample_14.fq.gz,<NA>,81ae3916a7ab5a0b72bc9487911b9e9b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789737,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534052,Sample 15,NextSeq 500,ERR1719524,26965806,866250047,SAMEA4534052,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 15_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/004/ERR1719524/ERR1719524.fastq.gz,691925041,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/004/ERR1719524/ERR1719524.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/004/ERR1719524/ERR1719524.fastq.gz,7120a589d29cf5af0d95f0cc75590353,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 15_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 15,<NA>,E-MTAB-5206:Sample 15,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433231,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/004/ERR1719524,483815391,ftp.sra.ebi.ac.uk/vol1/err/ERR171/004/ERR1719524,ftp.sra.ebi.ac.uk/vol1/err/ERR171/004/ERR1719524,11a30fb40150e5fbf5c9f98b678d7409,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719524/sample_15.fq.gz,617403660,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719524/sample_15.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719524/sample_15.fq.gz,<NA>,97dc0f41171d0cffe108fb19f8e4d16c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789738,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534053,Sample 16,NextSeq 500,ERR1719525,31150940,974286119,SAMEA4534053,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 16_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/005/ERR1719525/ERR1719525.fastq.gz,787670275,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/005/ERR1719525/ERR1719525.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/005/ERR1719525/ERR1719525.fastq.gz,f44deb3c552f152312a7f01ac487b55d,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 16_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 16,<NA>,E-MTAB-5206:Sample 16,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433232,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/005/ERR1719525,547142349,ftp.sra.ebi.ac.uk/vol1/err/ERR171/005/ERR1719525,ftp.sra.ebi.ac.uk/vol1/err/ERR171/005/ERR1719525,2d3de60835a6f81ea66500a92dc85e3a,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719525/sample_16.fq.gz,701764361,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719525/sample_16.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719525/sample_16.fq.gz,<NA>,038984beeae23ce4366d8517982d5063,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789739,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534054,Sample 17,NextSeq 500,ERR1719526,31786494,975436074,SAMEA4534054,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 17_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/006/ERR1719526/ERR1719526.fastq.gz,818879202,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/006/ERR1719526/ERR1719526.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/006/ERR1719526/ERR1719526.fastq.gz,f311a48da57a11dd008c79b99ae797a2,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 17_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 17,<NA>,E-MTAB-5206:Sample 17,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433233,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/006/ERR1719526,560198194,ftp.sra.ebi.ac.uk/vol1/err/ERR171/006/ERR1719526,ftp.sra.ebi.ac.uk/vol1/err/ERR171/006/ERR1719526,acfd31db42ee761f560e87aec204c79d,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719526/sample_17.fq.gz,730894352,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719526/sample_17.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719526/sample_17.fq.gz,<NA>,8373d6ecf7acfba3e7c80e3cafd2a803,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789740,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534055,Sample 18,NextSeq 500,ERR1719527,31291402,1004598571,SAMEA4534055,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 18_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/007/ERR1719527/ERR1719527.fastq.gz,840918222,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/007/ERR1719527/ERR1719527.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/007/ERR1719527/ERR1719527.fastq.gz,fc5578f9ee78ffce0611454452d44692,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 18_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 18,<NA>,E-MTAB-5206:Sample 18,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433234,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/007/ERR1719527,577945834,ftp.sra.ebi.ac.uk/vol1/err/ERR171/007/ERR1719527,ftp.sra.ebi.ac.uk/vol1/err/ERR171/007/ERR1719527,e03d750bdaa793342db431d8515c6260,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719527/sample_18.fq.gz,754086134,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719527/sample_18.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719527/sample_18.fq.gz,<NA>,3bb78f549702f3cf5dc47a3ecf1e0e6d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789741,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534056,Sample 19,NextSeq 500,ERR1719528,28466729,885092147,SAMEA4534056,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 19_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/008/ERR1719528/ERR1719528.fastq.gz,707716702,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/008/ERR1719528/ERR1719528.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/008/ERR1719528/ERR1719528.fastq.gz,f7be09cca41578cfd0908e06148290f7,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 19_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 19,<NA>,E-MTAB-5206:Sample 19,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433235,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/008/ERR1719528,499453371,ftp.sra.ebi.ac.uk/vol1/err/ERR171/008/ERR1719528,ftp.sra.ebi.ac.uk/vol1/err/ERR171/008/ERR1719528,73be180fce0f4d9ae632eee911bb0624,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719528/sample_19.fq.gz,629200707,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719528/sample_19.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719528/sample_19.fq.gz,<NA>,b3feded98fd6881e634e5ab5ac95dc7e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789742,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534057,Sample 2,Illumina HiSeq 2000,ERR1719529,43631646,1380630106,SAMEA4534057,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/009/ERR1719529/ERR1719529.fastq.gz,1058683503,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/009/ERR1719529/ERR1719529.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/009/ERR1719529/ERR1719529.fastq.gz,916a578e64e43a04947e992454349e72,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 2,<NA>,E-MTAB-5206:Sample 2,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433236,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/009/ERR1719529,1763202120,ftp.sra.ebi.ac.uk/vol1/err/ERR171/009/ERR1719529,ftp.sra.ebi.ac.uk/vol1/err/ERR171/009/ERR1719529,9353c4ada0cd817671006ffc1d2dda4e,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719529/sample_2.fq.gz,916473158,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719529/sample_2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719529/sample_2.fq.gz,<NA>,e2a8904246130772f761be27b5ec82ce,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789743,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4534058,Sample 20,NextSeq 500,ERR1719530,33738268,1059476203,SAMEA4534058,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 20_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/000/ERR1719530/ERR1719530.fastq.gz,882666039,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/000/ERR1719530/ERR1719530.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/000/ERR1719530/ERR1719530.fastq.gz,52d572f1d91de492383c42e3142d34e1,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 20_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 20,<NA>,E-MTAB-5206:Sample 20,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433237,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/000/ERR1719530,610179466,ftp.sra.ebi.ac.uk/vol1/err/ERR171/000/ERR1719530,ftp.sra.ebi.ac.uk/vol1/err/ERR171/000/ERR1719530,e3119cc6c92f9d585f88797583367ddb,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719530/sample_20.fq.gz,788657456,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719530/sample_20.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719530/sample_20.fq.gz,<NA>,20abd963290b6f20ad4792b0b371076b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789744,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534059,Sample 3,Illumina HiSeq 2000,ERR1719531,40726173,1283483477,SAMEA4534059,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/001/ERR1719531/ERR1719531.fastq.gz,1019672098,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/001/ERR1719531/ERR1719531.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/001/ERR1719531/ERR1719531.fastq.gz,48d63305141197c7e59df7132e8bf73e,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 3,<NA>,E-MTAB-5206:Sample 3,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433238,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/001/ERR1719531,1662489502,ftp.sra.ebi.ac.uk/vol1/err/ERR171/001/ERR1719531,ftp.sra.ebi.ac.uk/vol1/err/ERR171/001/ERR1719531,f52b777f26dd5cc122df62feb35688f1,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719531/sample_3.fq.gz,886717805,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719531/sample_3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719531/sample_3.fq.gz,<NA>,bd5fcc9547df90643208ec3c1d330814,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789745,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534060,Sample 4,Illumina HiSeq 2000,ERR1719532,39825021,1261053649,SAMEA4534060,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/002/ERR1719532/ERR1719532.fastq.gz,990700184,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/002/ERR1719532/ERR1719532.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/002/ERR1719532/ERR1719532.fastq.gz,10d73df1a9d525e440a5e9a47cd4ac82,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 4,<NA>,E-MTAB-5206:Sample 4,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433239,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/002/ERR1719532,1626909751,ftp.sra.ebi.ac.uk/vol1/err/ERR171/002/ERR1719532,ftp.sra.ebi.ac.uk/vol1/err/ERR171/002/ERR1719532,48a2a2d1974ba5dec6797a51f6aa2c13,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719532/sample_4.fq.gz,860845392,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719532/sample_4.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719532/sample_4.fq.gz,<NA>,4c13293dd35556619b6ffe7c97b0d709,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789746,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534061,Sample 5,Illumina HiSeq 2000,ERR1719533,50368881,1646355648,SAMEA4534061,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/003/ERR1719533/ERR1719533.fastq.gz,1172357066,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/003/ERR1719533/ERR1719533.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/003/ERR1719533/ERR1719533.fastq.gz,a15ff1ac533b37496d33be390a6dd81f,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 5,<NA>,E-MTAB-5206:Sample 5,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433240,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/003/ERR1719533,2032983145,ftp.sra.ebi.ac.uk/vol1/err/ERR171/003/ERR1719533,ftp.sra.ebi.ac.uk/vol1/err/ERR171/003/ERR1719533,9df3e1afe9b16ea46f4fabb4a4a34b41,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719533/sample_5.fq.gz,1007432317,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719533/sample_5.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719533/sample_5.fq.gz,<NA>,5d272240ba617f84ab649dbbfc48e6de,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789747,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534062,Sample 6,Illumina HiSeq 2000,ERR1719534,47535077,1522019700,SAMEA4534062,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/004/ERR1719534/ERR1719534.fastq.gz,1123174355,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/004/ERR1719534/ERR1719534.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/004/ERR1719534/ERR1719534.fastq.gz,50881946a7b7ec6afeab6dd1274b92b6,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 6,<NA>,E-MTAB-5206:Sample 6,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433241,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/004/ERR1719534,1907435873,ftp.sra.ebi.ac.uk/vol1/err/ERR171/004/ERR1719534,ftp.sra.ebi.ac.uk/vol1/err/ERR171/004/ERR1719534,26481ec08a46592003763de5e1baafa9,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719534/sample_6.fq.gz,967566566,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719534/sample_6.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719534/sample_6.fq.gz,<NA>,3d95e695d24547022d48cc14462b80e1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789748,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534063,Sample 7,Illumina HiSeq 2000,ERR1719535,49746314,1603492330,SAMEA4534063,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/005/ERR1719535/ERR1719535.fastq.gz,1175924373,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/005/ERR1719535/ERR1719535.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/005/ERR1719535/ERR1719535.fastq.gz,b5270b79d2ef0fb543cc4e601b5bb8f5,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 7,<NA>,E-MTAB-5206:Sample 7,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433242,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/005/ERR1719535,2013088184,ftp.sra.ebi.ac.uk/vol1/err/ERR171/005/ERR1719535,ftp.sra.ebi.ac.uk/vol1/err/ERR171/005/ERR1719535,f84395c1b2022dc4e8a3a6728f78ac45,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719535/sample_7.fq.gz,1012794146,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719535/sample_7.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719535/sample_7.fq.gz,<NA>,bc03d5e87c560ec1fa0e736923c233f8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789749,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,Illumina HiSeq 2000 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534064,Sample 8,Illumina HiSeq 2000,ERR1719536,48745145,1548939461,SAMEA4534064,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/006/ERR1719536/ERR1719536.fastq.gz,1114980042,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/006/ERR1719536/ERR1719536.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/006/ERR1719536/ERR1719536.fastq.gz,1e7cede29d7563266d0886ab3ba026d4,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 8,<NA>,E-MTAB-5206:Sample 8,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433243,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/006/ERR1719536,1928974188,ftp.sra.ebi.ac.uk/vol1/err/ERR171/006/ERR1719536,ftp.sra.ebi.ac.uk/vol1/err/ERR171/006/ERR1719536,693dc8ef726eb7b3bb10cbb312f20da1,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719536/sample_8.fq.gz,956004832,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719536/sample_8.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719536/sample_8.fq.gz,<NA>,a73001fde95a00d362b8c3128611c2a6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB17636,ERX1789750,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,NextSeq 500 sequencing; Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMEA4534065,Sample 9,NextSeq 500,ERR1719537,24213954,761912205,SAMEA4534065,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,L929,fibroblast,\"Department of Pathology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5206:Sample 9_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR171/007/ERR1719537/ERR1719537.fastq.gz,491156447,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/007/ERR1719537/ERR1719537.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR171/007/ERR1719537/ERR1719537.fastq.gz,4baec9c7efd0f98ed355e96ed8b0c5eb,2016-11-03,2017-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 9_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5206:Sample 9,<NA>,E-MTAB-5206:Sample 9,<NA>,\"Protocols: L929 cells in 60-mm dishes were infected at an MOI of 10 in an initial volume of 1.5 ml DMEM with 1% FBS. After 1 h adsorption at 37 °C an additional 3.5 ml was added and incubation continued. At the appropriate time points, cells were treated with cycloheximide (Sigma-Aldrich; to 100 μg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 μl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 μg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to Ribo-Seq and RNA-Seq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina smallRNA v2 to allow multiplexing, as described previously (Chung et al., 2015).\",<NA>,<NA>,<NA>,<NA>,ERS1433244,ERP019506,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR171/007/ERR1719537,428529750,ftp.sra.ebi.ac.uk/vol1/err/ERR171/007/ERR1719537,ftp.sra.ebi.ac.uk/vol1/err/ERR171/007/ERR1719537,8c4a9ed9734a79388e4d42da7a73b75d,<NA>,E-MTAB-5206,Analysis of cardiovirus and infected host-cell gene expression through RNA sequencing and ribosome profiling,<NA>,<NA>,ERA745198,fasp.sra.ebi.ac.uk:/vol1/run/ERR171/ERR1719537/sample_9.fq.gz,424063048,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719537/sample_9.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR171/ERR1719537/sample_9.fq.gz,<NA>,fd6eb0c69ba313efc69e684433686a31,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19014,ERX1861079,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50540668,hfq1,Illumina HiSeq 2000,ERR1797529,37747215,1025325032,SAMEA50540668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Molecular Microbiology John Innes Centre,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5408:hfq1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/009/ERR1797529/ERR1797529.fastq.gz,948526016,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797529/ERR1797529.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/009/ERR1797529/ERR1797529.fastq.gz,e4dfbe06a856fe49927470a37c3736b6,2017-01-16,2017-08-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,hfq1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5408:hfq1,<NA>,E-MTAB-5408:hfq1,<NA>,\"Protocols: SBW25 WT and Δhfq cultures were grown at 28°C in M9 medium supplemented with 0.4% pyruvate and 0.4% casamino acids to the late exponential phase. Cells were harvested by rapid filtration as described in Oh et al. (2011) Cell 147(6):1295-1308. Collected cells were flash frozen in liquid nitrogen and cryogenically pulverized by mixer milling (Retsch). Pulverized cells were thawed and clarified by centrifugation. Resulting lysates were digested with MNase, quenched with EGTA and resolved by sucrose density gradient ultracentrifugation. Ribosome-protected mRNA footprints were processed as previously described in Becker et al.(2013) Nat Protoc 8(11):2212-2239. Sequencing library was prepared as described in Oh et al. (2011) Cell 147(6):1295-1308. Briefly, RNA extracted from monosome fractions was size selected for 28 to 42 nucleotides by running on a 15% TBE-urea gel using a 10 bp ladder as the standard. The 3′ ends of RNA were dephosphorylated by T4 PNK and then ligated to the linker 5′_App/CTGTAGGCACCATCAAT/3 ddC_3′. The ligated products were size selected for 45 to 60 nucleotides and reverse transcribed with no more than five molar excess of 5′_5phosCAAGCAGAAGACGGCATACGAATTGATGGTGCCTACAG_3′. The reverse transcribed cDNA was size selected for 125 to 150 bp and circularised. The circDNA was PCR amplified with 5′_AATGATACGGCGACCACCGA_3′ and 5′_CAAGCAGAAGACGGCATACGA_3′ for 7 to 10 cycles and the amplicons were resolved on an 8% polyacrylamide gel i...\",<NA>,<NA>,<NA>,<NA>,ERS1505502,ERP020995,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR179/009/ERR1797529,802201547,ftp.sra.ebi.ac.uk/vol1/err/ERR179/009/ERR1797529,ftp.sra.ebi.ac.uk/vol1/err/ERR179/009/ERR1797529,fe15d6e453b6e73be3e498edce65ab3f,<NA>,E-MTAB-5408,Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,<NA>,<NA>,ERA789570,fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1797529/hfq1.fq.gz,838072192,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797529/hfq1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797529/hfq1.fq.gz,<NA>,78706f2559c01ce0fccf6f48fe3250e8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19014,ERX1861080,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50541418,hfq2,Illumina HiSeq 2000,ERR1797530,27730412,742041285,SAMEA50541418,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Molecular Microbiology John Innes Centre,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5408:hfq2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/000/ERR1797530/ERR1797530.fastq.gz,692039537,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797530/ERR1797530.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/000/ERR1797530/ERR1797530.fastq.gz,40a07583c5292f0dd0a8109ec25e375b,2017-01-16,2017-08-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,hfq2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5408:hfq2,<NA>,E-MTAB-5408:hfq2,<NA>,\"Protocols: SBW25 WT and Δhfq cultures were grown at 28°C in M9 medium supplemented with 0.4% pyruvate and 0.4% casamino acids to the late exponential phase. Cells were harvested by rapid filtration as described in Oh et al. (2011) Cell 147(6):1295-1308. Collected cells were flash frozen in liquid nitrogen and cryogenically pulverized by mixer milling (Retsch). Pulverized cells were thawed and clarified by centrifugation. Resulting lysates were digested with MNase, quenched with EGTA and resolved by sucrose density gradient ultracentrifugation. Ribosome-protected mRNA footprints were processed as previously described in Becker et al.(2013) Nat Protoc 8(11):2212-2239. Sequencing library was prepared as described in Oh et al. (2011) Cell 147(6):1295-1308. Briefly, RNA extracted from monosome fractions was size selected for 28 to 42 nucleotides by running on a 15% TBE-urea gel using a 10 bp ladder as the standard. The 3′ ends of RNA were dephosphorylated by T4 PNK and then ligated to the linker 5′_App/CTGTAGGCACCATCAAT/3 ddC_3′. The ligated products were size selected for 45 to 60 nucleotides and reverse transcribed with no more than five molar excess of 5′_5phosCAAGCAGAAGACGGCATACGAATTGATGGTGCCTACAG_3′. The reverse transcribed cDNA was size selected for 125 to 150 bp and circularised. The circDNA was PCR amplified with 5′_AATGATACGGCGACCACCGA_3′ and 5′_CAAGCAGAAGACGGCATACGA_3′ for 7 to 10 cycles and the amplicons were resolved on an 8% polyacrylamide gel i...\",<NA>,<NA>,<NA>,<NA>,ERS1505503,ERP020995,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR179/000/ERR1797530,586053596,ftp.sra.ebi.ac.uk/vol1/err/ERR179/000/ERR1797530,ftp.sra.ebi.ac.uk/vol1/err/ERR179/000/ERR1797530,bcc230a0385c0388f391eca368c17afb,<NA>,E-MTAB-5408,Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,<NA>,<NA>,ERA789570,fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1797530/hfq2.fq.gz,611634904,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797530/hfq2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797530/hfq2.fq.gz,<NA>,0620a248cbfdcca0cd00b646f2642e04,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19014,ERX1861081,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50542168,wt1,Illumina HiSeq 2000,ERR1797531,13719271,374602064,SAMEA50542168,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Molecular Microbiology John Innes Centre,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5408:wt1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/001/ERR1797531/ERR1797531.fastq.gz,362855921,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797531/ERR1797531.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/001/ERR1797531/ERR1797531.fastq.gz,cf07c48dd63c1ab727d086ba9550b16c,2017-01-16,2017-08-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5408:wt1,<NA>,E-MTAB-5408:wt1,<NA>,\"Protocols: SBW25 WT and Δhfq cultures were grown at 28°C in M9 medium supplemented with 0.4% pyruvate and 0.4% casamino acids to the late exponential phase. Cells were harvested by rapid filtration as described in Oh et al. (2011) Cell 147(6):1295-1308. Collected cells were flash frozen in liquid nitrogen and cryogenically pulverized by mixer milling (Retsch). Pulverized cells were thawed and clarified by centrifugation. Resulting lysates were digested with MNase, quenched with EGTA and resolved by sucrose density gradient ultracentrifugation. Ribosome-protected mRNA footprints were processed as previously described in Becker et al.(2013) Nat Protoc 8(11):2212-2239. Sequencing library was prepared as described in Oh et al. (2011) Cell 147(6):1295-1308. Briefly, RNA extracted from monosome fractions was size selected for 28 to 42 nucleotides by running on a 15% TBE-urea gel using a 10 bp ladder as the standard. The 3′ ends of RNA were dephosphorylated by T4 PNK and then ligated to the linker 5′_App/CTGTAGGCACCATCAAT/3 ddC_3′. The ligated products were size selected for 45 to 60 nucleotides and reverse transcribed with no more than five molar excess of 5′_5phosCAAGCAGAAGACGGCATACGAATTGATGGTGCCTACAG_3′. The reverse transcribed cDNA was size selected for 125 to 150 bp and circularised. The circDNA was PCR amplified with 5′_AATGATACGGCGACCACCGA_3′ and 5′_CAAGCAGAAGACGGCATACGA_3′ for 7 to 10 cycles and the amplicons were resolved on an 8% polyacrylamide gel i...\",<NA>,<NA>,<NA>,<NA>,ERS1505504,ERP020995,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR179/001/ERR1797531,300467121,ftp.sra.ebi.ac.uk/vol1/err/ERR179/001/ERR1797531,ftp.sra.ebi.ac.uk/vol1/err/ERR179/001/ERR1797531,739f2a5645bb845f3f85e93ebb5a948f,<NA>,E-MTAB-5408,Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,<NA>,<NA>,ERA789570,fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1797531/wt1.fq.gz,324671862,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797531/wt1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797531/wt1.fq.gz,<NA>,136f34db14a59e479c1e8c0e7dd5007d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19014,ERX1861082,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,Illumina HiSeq 2000 sequencing; Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,294,Pseudomonas fluorescens,MNase-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA50542918,wt2,Illumina HiSeq 2000,ERR1797532,24135343,663303116,SAMEA50542918,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Molecular Microbiology John Innes Centre,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5408:wt2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR179/002/ERR1797532/ERR1797532.fastq.gz,653795293,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797532/ERR1797532.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR179/002/ERR1797532/ERR1797532.fastq.gz,6f7228a4e98039f4b9a94a4843b2aae6,2017-01-16,2017-08-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5408:wt2,<NA>,E-MTAB-5408:wt2,<NA>,\"Protocols: SBW25 WT and Δhfq cultures were grown at 28°C in M9 medium supplemented with 0.4% pyruvate and 0.4% casamino acids to the late exponential phase. Cells were harvested by rapid filtration as described in Oh et al. (2011) Cell 147(6):1295-1308. Collected cells were flash frozen in liquid nitrogen and cryogenically pulverized by mixer milling (Retsch). Pulverized cells were thawed and clarified by centrifugation. Resulting lysates were digested with MNase, quenched with EGTA and resolved by sucrose density gradient ultracentrifugation. Ribosome-protected mRNA footprints were processed as previously described in Becker et al.(2013) Nat Protoc 8(11):2212-2239. Sequencing library was prepared as described in Oh et al. (2011) Cell 147(6):1295-1308. Briefly, RNA extracted from monosome fractions was size selected for 28 to 42 nucleotides by running on a 15% TBE-urea gel using a 10 bp ladder as the standard. The 3′ ends of RNA were dephosphorylated by T4 PNK and then ligated to the linker 5′_App/CTGTAGGCACCATCAAT/3 ddC_3′. The ligated products were size selected for 45 to 60 nucleotides and reverse transcribed with no more than five molar excess of 5′_5phosCAAGCAGAAGACGGCATACGAATTGATGGTGCCTACAG_3′. The reverse transcribed cDNA was size selected for 125 to 150 bp and circularised. The circDNA was PCR amplified with 5′_AATGATACGGCGACCACCGA_3′ and 5′_CAAGCAGAAGACGGCATACGA_3′ for 7 to 10 cycles and the amplicons were resolved on an 8% polyacrylamide gel i...\",<NA>,<NA>,<NA>,<NA>,ERS1505505,ERP020995,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR179/002/ERR1797532,526683309,ftp.sra.ebi.ac.uk/vol1/err/ERR179/002/ERR1797532,ftp.sra.ebi.ac.uk/vol1/err/ERR179/002/ERR1797532,ac58b97cc46257413a5535c08e625e3b,<NA>,E-MTAB-5408,Ribosome profiling of Pseudomonas fluorescens SBW25 and its hfq deletion mutant.,<NA>,<NA>,ERA789570,fasp.sra.ebi.ac.uk:/vol1/run/ERR179/ERR1797532/wt2.fq.gz,584238401,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797532/wt2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR179/ERR1797532/wt2.fq.gz,<NA>,82525737b32cebd8d6321c5fba4968ec,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865801,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52778668,Sample 1,NextSeq 500,ERR1802070,32991341,1030531389,SAMEA52778668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Vero E6,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/000/ERR1802070/ERR1802070.fastq.gz,610134012,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/000/ERR1802070/ERR1802070.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/000/ERR1802070/ERR1802070.fastq.gz,da72039586c0cbe142650842bcdc81af,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 1,<NA>,E-MTAB-5418:Sample 1,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508486,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/000/ERR1802070,491183459,ftp.sra.ebi.ac.uk/vol1/err/ERR180/000/ERR1802070,ftp.sra.ebi.ac.uk/vol1/err/ERR180/000/ERR1802070,5965f6f3df65edfd47d8285f9cf1688d,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802070/Sample1.fastq.gz,526689778,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802070/Sample1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802070/Sample1.fastq.gz,<NA>,380346adff941ebb9f939a6392834b91,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865802,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52779418,Sample 10,NextSeq 500,ERR1802071,32655516,1036495741,SAMEA52779418,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 10_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/001/ERR1802071/ERR1802071.fastq.gz,702011605,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/001/ERR1802071/ERR1802071.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/001/ERR1802071/ERR1802071.fastq.gz,ef0088fd6a144e3e5575aaefae96f255,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 10_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 10,<NA>,E-MTAB-5418:Sample 10,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508487,ERP021092,RNA-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/001/ERR1802071,510390485,ftp.sra.ebi.ac.uk/vol1/err/ERR180/001/ERR1802071,ftp.sra.ebi.ac.uk/vol1/err/ERR180/001/ERR1802071,d7201eef6ab91963cdcd491850ff8bb3,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802071/Sample10.fastq.gz,619825846,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802071/Sample10.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802071/Sample10.fastq.gz,<NA>,94ca5667be23a76e456feff537560c43,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865803,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52780168,Sample 2,NextSeq 500,ERR1802072,37859333,1233151851,SAMEA52780168,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Vero E6,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/002/ERR1802072/ERR1802072.fastq.gz,621052293,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/002/ERR1802072/ERR1802072.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/002/ERR1802072/ERR1802072.fastq.gz,ec3d0980fe015cef38affb1e25d2e96c,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 2,<NA>,E-MTAB-5418:Sample 2,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508488,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/002/ERR1802072,563597198,ftp.sra.ebi.ac.uk/vol1/err/ERR180/002/ERR1802072,ftp.sra.ebi.ac.uk/vol1/err/ERR180/002/ERR1802072,7e0fdf8de58a8cd1aed739fa006b6ade,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802072/Sample2.fastq.gz,527347450,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802072/Sample2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802072/Sample2.fastq.gz,<NA>,2041ed192547aa96423a498aa34f1a89,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865804,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52780918,Sample 3,NextSeq 500,ERR1802073,23378265,748417766,SAMEA52780918,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Vero E6,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/003/ERR1802073/ERR1802073.fastq.gz,453818663,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/003/ERR1802073/ERR1802073.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/003/ERR1802073/ERR1802073.fastq.gz,f9afcc4af8960ab6a992d0fd3808fdfb,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 3,<NA>,E-MTAB-5418:Sample 3,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508489,ERP021092,RNA-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/003/ERR1802073,350560539,ftp.sra.ebi.ac.uk/vol1/err/ERR180/003/ERR1802073,ftp.sra.ebi.ac.uk/vol1/err/ERR180/003/ERR1802073,3d01009fca7104387156ac9e698c8c1a,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802073/Sample3.fastq.gz,395747699,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802073/Sample3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802073/Sample3.fastq.gz,<NA>,94fcabb57b33bbf149d16b9d347c4fcb,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865805,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,60711,Chlorocebus sabaeus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52781668,Sample 4,NextSeq 500,ERR1802074,19273387,614792063,SAMEA52781668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Vero E6,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/004/ERR1802074/ERR1802074.fastq.gz,379620437,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/004/ERR1802074/ERR1802074.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/004/ERR1802074/ERR1802074.fastq.gz,5cf2010390bc8783e2f03c1317f59319,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 4,<NA>,E-MTAB-5418:Sample 4,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508490,ERP021092,RNA-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/004/ERR1802074,288983413,ftp.sra.ebi.ac.uk/vol1/err/ERR180/004/ERR1802074,ftp.sra.ebi.ac.uk/vol1/err/ERR180/004/ERR1802074,681f6a80b91b68c5300e99cc784bb2d0,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802074/Sample4.fastq.gz,331470220,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802074/Sample4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802074/Sample4.fastq.gz,<NA>,f1a79e4ba3f3727333b10e85d698d8c5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865806,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52782418,Sample 5,NextSeq 500,ERR1802075,30830839,1009143241,SAMEA52782418,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/005/ERR1802075/ERR1802075.fastq.gz,486016098,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/005/ERR1802075/ERR1802075.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/005/ERR1802075/ERR1802075.fastq.gz,ee15beed9076b95222305329bfb634cf,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 5,<NA>,E-MTAB-5418:Sample 5,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508491,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/005/ERR1802075,469454317,ftp.sra.ebi.ac.uk/vol1/err/ERR180/005/ERR1802075,ftp.sra.ebi.ac.uk/vol1/err/ERR180/005/ERR1802075,070e3a2b42ca59f7bae480daecf17d47,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802075/Sample5.fastq.gz,411393311,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802075/Sample5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802075/Sample5.fastq.gz,<NA>,dc68c1c1b602a1cd15c25c6268323a4f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865807,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52783168,Sample 6,NextSeq 500,ERR1802076,26929369,882916179,SAMEA52783168,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/006/ERR1802076/ERR1802076.fastq.gz,431341702,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/006/ERR1802076/ERR1802076.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/006/ERR1802076/ERR1802076.fastq.gz,fa4d73057913f6bb8e9d0729fa81d1fb,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 6,<NA>,E-MTAB-5418:Sample 6,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508492,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/006/ERR1802076,415790072,ftp.sra.ebi.ac.uk/vol1/err/ERR180/006/ERR1802076,ftp.sra.ebi.ac.uk/vol1/err/ERR180/006/ERR1802076,b2a8290fd209cfe8b5a2af80f7168a9b,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802076/Sample6.fastq.gz,366269719,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802076/Sample6.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802076/Sample6.fastq.gz,<NA>,8c4df8abdb860b9ae181490f359e444f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865808,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52783918,Sample 7,NextSeq 500,ERR1802077,12627212,397075719,SAMEA52783918,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/007/ERR1802077/ERR1802077.fastq.gz,294559013,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/007/ERR1802077/ERR1802077.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/007/ERR1802077/ERR1802077.fastq.gz,63606bb96bac868c1752ff776502bc15,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 7,<NA>,E-MTAB-5418:Sample 7,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508493,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/007/ERR1802077,216350595,ftp.sra.ebi.ac.uk/vol1/err/ERR180/007/ERR1802077,ftp.sra.ebi.ac.uk/vol1/err/ERR180/007/ERR1802077,f9e1224f5b6b84b07d557747ee84b6f3,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802077/Sample7.fastq.gz,263810595,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802077/Sample7.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802077/Sample7.fastq.gz,<NA>,b57cfd282eb198f81d91c22946e3591d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865809,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52784668,Sample 8,NextSeq 500,ERR1802078,17629538,542405945,SAMEA52784668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/008/ERR1802078/ERR1802078.fastq.gz,369946531,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/008/ERR1802078/ERR1802078.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/008/ERR1802078/ERR1802078.fastq.gz,af713240f690d78b61635dc31648ddb6,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 8,<NA>,E-MTAB-5418:Sample 8,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508494,ERP021092,Ribo-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/008/ERR1802078,296553517,ftp.sra.ebi.ac.uk/vol1/err/ERR180/008/ERR1802078,ftp.sra.ebi.ac.uk/vol1/err/ERR180/008/ERR1802078,640145932bbb3ef5ea2850294d6de9e9,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802078/Sample8.fastq.gz,327537302,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802078/Sample8.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802078/Sample8.fastq.gz,<NA>,953d343b979e1bbd230bc1f4c9827732,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19102,ERX1865810,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,7160,Aedes albopictus,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA52785418,Sample 9,NextSeq 500,ERR1802079,40647908,1316636689,SAMEA52785418,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,C6/36,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5418:Sample 9_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR180/009/ERR1802079/ERR1802079.fastq.gz,883547645,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/009/ERR1802079/ERR1802079.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR180/009/ERR1802079/ERR1802079.fastq.gz,499237736f390bf7827d5d48311dfba4,2017-01-19,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 9_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5418:Sample 9,<NA>,E-MTAB-5418:Sample 9,<NA>,\"Protocols: Vero E6 cells and C6/36 cells were maintained in Dulbecco’s modification of Eagle’s medium supplemented with 10% (vol/vol) fetal calf serum (FCS). ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia et al., 2009; Ingolia et al., 2012), except ribosomal RNA contamination was removed by treatment with duplex-specific nuclease (DSN) for Samples 7 and 8, and library amplicons were constructed using a small RNA cloning strategy (Guo et al., 2010) adapted to Illumina small RNA v2 to allow multiplexing. The methods used were as described by Irigoyen et al. (2016).\",<NA>,<NA>,<NA>,<NA>,ERS1508495,ERP021092,RNA-Seq,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR180/009/ERR1802079,641885480,ftp.sra.ebi.ac.uk/vol1/err/ERR180/009/ERR1802079,ftp.sra.ebi.ac.uk/vol1/err/ERR180/009/ERR1802079,01f7bd2ff313f8ebc998e2e080f7aace,<NA>,E-MTAB-5418,Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing,<NA>,<NA>,ERA789926,fasp.sra.ebi.ac.uk:/vol1/run/ERR180/ERR1802079/Sample9.fastq.gz,780157423,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802079/Sample9.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR180/ERR1802079/Sample9.fastq.gz,<NA>,1c908808c5c2a0629d0972fdaf647e39,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19678,ERX1918552,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100849168,Sample 1,NextSeq 500,ERR1856693,111880423,3793356586,SAMEA100849168,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HEK293,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5519:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz,1574781621,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz,933d015121139cb65f059cd94cc2879c,2017-02-27,2017-07-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5519:Sample 1,<NA>,E-MTAB-5519:Sample 1,<NA>,\"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 μg/ml chloramphenicol and 100 μg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 μl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 μg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4°C. 200 μl aliquots of cell lysates were treated with 7.5 μl RNase 1 (100 units/μl) at 28°C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4°C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 μg/ml) for 30 min at 42°C. RPFs were recovered by extracting twice with pre-warmed (65°C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 μg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. The RNA samples ...\",<NA>,<NA>,<NA>,<NA>,ERS1572580,ERP021735,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR185/003/ERR1856693,1703931232,ftp.sra.ebi.ac.uk/vol1/err/ERR185/003/ERR1856693,ftp.sra.ebi.ac.uk/vol1/err/ERR185/003/ERR1856693,912d6dfd0e558ff0d5ecae201894647a,<NA>,E-MTAB-5519,Analysis of mitochondrial gene expression with Ribosome Profiling,<NA>,<NA>,ERA827970,fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856693/sample_1.fq.gz,1297850069,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856693/sample_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856693/sample_1.fq.gz,<NA>,be77b26802183d016e9a09b954fa9eb9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19678,ERX1918553,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100849918,Sample 2,NextSeq 500,ERR1856694,58039284,1693191518,SAMEA100849918,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HEK293 PDE12-/-,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5519:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz,858424316,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz,56ac8f6c0af130c4c23e5f0f59b1ae8b,2017-02-27,2017-07-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5519:Sample 2,<NA>,E-MTAB-5519:Sample 2,<NA>,\"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 μg/ml chloramphenicol and 100 μg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 μl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 μg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4°C. 200 μl aliquots of cell lysates were treated with 7.5 μl RNase 1 (100 units/μl) at 28°C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4°C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 μg/ml) for 30 min at 42°C. RPFs were recovered by extracting twice with pre-warmed (65°C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 μg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. The RNA samples ...\",<NA>,<NA>,<NA>,<NA>,ERS1572581,ERP021735,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR185/004/ERR1856694,831078268,ftp.sra.ebi.ac.uk/vol1/err/ERR185/004/ERR1856694,ftp.sra.ebi.ac.uk/vol1/err/ERR185/004/ERR1856694,61c1d55cd716a7969ea1a981efe55fd5,<NA>,E-MTAB-5519,Analysis of mitochondrial gene expression with Ribosome Profiling,<NA>,<NA>,ERA827970,fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856694/sample_2.fq.gz,706733223,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856694/sample_2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856694/sample_2.fq.gz,<NA>,ef9aa0bcfbec535ff24d8e5fd039b064,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB19678,ERX1918554,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA100850668,Sample 3,NextSeq 500,ERR1856695,54983210,1222852079,SAMEA100850668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,deltaFLP 143B cybrid,<NA>,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5519:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz,767654136,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz,c35c92172d2b9f554b4de63c2304ba2f,2017-02-27,2017-07-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5519:Sample 3,<NA>,E-MTAB-5519:Sample 3,<NA>,\"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 μg/ml chloramphenicol and 100 μg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 μl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 μg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4°C. 200 μl aliquots of cell lysates were treated with 7.5 μl RNase 1 (100 units/μl) at 28°C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4°C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 μg/ml) for 30 min at 42°C. RPFs were recovered by extracting twice with pre-warmed (65°C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 μg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. The RNA samples ...\",<NA>,<NA>,<NA>,<NA>,ERS1572582,ERP021735,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR185/005/ERR1856695,652346364,ftp.sra.ebi.ac.uk/vol1/err/ERR185/005/ERR1856695,ftp.sra.ebi.ac.uk/vol1/err/ERR185/005/ERR1856695,c55c732aa688fae7b85f86928020617d,<NA>,E-MTAB-5519,Analysis of mitochondrial gene expression with Ribosome Profiling,<NA>,<NA>,ERA827970,fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856695/sample_3.fq.gz,629809812,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856695/sample_3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856695/sample_3.fq.gz,<NA>,2113d8303e17bf756a6891ecbbaa480b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054828,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106710,wt.N.CHX.mrna.1,Illumina HiSeq 2000,ERR1994959,26425976,1321298800,SAMEA104106710,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.CHX.mrna.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/009/ERR1994959/ERR1994959.fastq.gz,995033263,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/009/ERR1994959/ERR1994959.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/009/ERR1994959/ERR1994959.fastq.gz,b7f9c8e11e2e4e763df74a45cd98c5e8,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.CHX.mrna.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.CHX.mrna.1,<NA>,E-MTAB-5794:wt.N.CHX.mrna.1,<NA>,Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1770603,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/009/ERR1994959,632849503,ftp.sra.ebi.ac.uk/vol1/err/ERR199/009/ERR1994959,ftp.sra.ebi.ac.uk/vol1/err/ERR199/009/ERR1994959,4f73d68c5790826e57b5b0e7b8d4909e,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994959/wt_N_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT014_TCTCGGTT.fq.gz,926190374,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994959/wt_N_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT014_TCTCGGTT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994959/wt_N_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT014_TCTCGGTT.fq.gz,<NA>,35a1e4be3db8cc591d065c11f47d3f9c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054829,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106711,wt.N.CHX.mrna.3,Illumina HiSeq 2000,ERR1994960,36240950,1812047500,SAMEA104106711,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.CHX.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/000/ERR1994960/ERR1994960.fastq.gz,1300749872,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/000/ERR1994960/ERR1994960.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/000/ERR1994960/ERR1994960.fastq.gz,e8f9ba45a15606dac9e652ab818d21fa,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.CHX.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.CHX.mrna.3,<NA>,E-MTAB-5794:wt.N.CHX.mrna.3,<NA>,Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1770604,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/000/ERR1994960,806658360,ftp.sra.ebi.ac.uk/vol1/err/ERR199/000/ERR1994960,ftp.sra.ebi.ac.uk/vol1/err/ERR199/000/ERR1994960,338ea494b74e528931dd790bf8ad1cba,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994960/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,1225381442,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994960/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994960/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,<NA>,cdf5e357aca1a3ba53528fa99a8a76ae,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054830,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106712,wt.N.CHX.ribo.1,NextSeq 550,ERR1994961,63059496,3152974800,SAMEA104106712,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.CHX.ribo.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/001/ERR1994961/ERR1994961.fastq.gz,2134700561,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/001/ERR1994961/ERR1994961.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/001/ERR1994961/ERR1994961.fastq.gz,d73c2e9ef299c80e12f6e4a540a021bd,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.CHX.ribo.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.CHX.ribo.1,<NA>,E-MTAB-5794:wt.N.CHX.ribo.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fragments were treated with 10 u\",<NA>,<NA>,<NA>,<NA>,ERS1770605,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/001/ERR1994961,1527179953,ftp.sra.ebi.ac.uk/vol1/err/ERR199/001/ERR1994961,ftp.sra.ebi.ac.uk/vol1/err/ERR199/001/ERR1994961,cb9d26b9069bc646127c61b13bde847c,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994961/wt_N_NH4_CHX_fastfreeze_exp05_ribo_11848X2_150923_D00294_0200_BC7V3HANXX_3.txt.gz,1947828885,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994961/wt_N_NH4_CHX_fastfreeze_exp05_ribo_11848X2_150923_D00294_0200_BC7V3HANXX_3.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994961/wt_N_NH4_CHX_fastfreeze_exp05_ribo_11848X2_150923_D00294_0200_BC7V3HANXX_3.txt.gz,<NA>,efeaba3dc538ae90859e916fe41fe088,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054831,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106713,wt.N.CHX.ribo.3,Illumina HiSeq 2000,ERR1994962,26742065,1337103250,SAMEA104106713,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.CHX.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/002/ERR1994962/ERR1994962.fastq.gz,635225493,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/002/ERR1994962/ERR1994962.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/002/ERR1994962/ERR1994962.fastq.gz,6a7c0c961264caaad13cfdcb77a99a96,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.CHX.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.CHX.ribo.3,<NA>,E-MTAB-5794:wt.N.CHX.ribo.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fragments were treated with 10 u\",<NA>,<NA>,<NA>,<NA>,ERS1770606,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/002/ERR1994962,457766401,ftp.sra.ebi.ac.uk/vol1/err/ERR199/002/ERR1994962,ftp.sra.ebi.ac.uk/vol1/err/ERR199/002/ERR1994962,2897f2ab1b2663fc0cf0f7967e2e34e1,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994962/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,558194785,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994962/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994962/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,<NA>,ef4ec4280601e2884d421aadb1ab7425,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054832,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106714,wt.N.noCHX.mrna.1,Illumina HiSeq 2000,ERR1994963,16170457,808522850,SAMEA104106714,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.noCHX.mrna.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/003/ERR1994963/ERR1994963.fastq.gz,607730223,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/003/ERR1994963/ERR1994963.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/003/ERR1994963/ERR1994963.fastq.gz,19af49409b3eec0e8431270bf065831b,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.noCHX.mrna.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.noCHX.mrna.1,<NA>,E-MTAB-5794:wt.N.noCHX.mrna.1,<NA>,Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1770607,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/003/ERR1994963,386844062,ftp.sra.ebi.ac.uk/vol1/err/ERR199/003/ERR1994963,ftp.sra.ebi.ac.uk/vol1/err/ERR199/003/ERR1994963,211e384f7d2a778db4c767ebcd91cc15,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994963/wt_N_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT047_TAGTCTTG.fq.gz,565567145,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994963/wt_N_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT047_TAGTCTTG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994963/wt_N_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT047_TAGTCTTG.fq.gz,<NA>,d89c8102a993ce07077206a583c1e7f3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054833,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106715,wt.N.noCHX.mrna.3,Illumina HiSeq 2000,ERR1994964,23972947,1198647350,SAMEA104106715,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.noCHX.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/004/ERR1994964/ERR1994964.fastq.gz,862604448,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/004/ERR1994964/ERR1994964.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/004/ERR1994964/ERR1994964.fastq.gz,c2892a4144768ae6a4b3737dfeb15800,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.noCHX.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.noCHX.mrna.3,<NA>,E-MTAB-5794:wt.N.noCHX.mrna.3,<NA>,Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1770608,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/004/ERR1994964,537673923,ftp.sra.ebi.ac.uk/vol1/err/ERR199/004/ERR1994964,ftp.sra.ebi.ac.uk/vol1/err/ERR199/004/ERR1994964,361b4ef11f71fee64cf67f02e5a89913,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994964/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,812213937,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994964/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994964/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,<NA>,9fe61461eeb189b43ea05180b3d86f6a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054834,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106716,wt.N.noCHX.ribo.1,Illumina HiSeq 2000,ERR1994965,40531552,2026577600,SAMEA104106716,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.noCHX.ribo.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/005/ERR1994965/ERR1994965.fastq.gz,1186671453,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/005/ERR1994965/ERR1994965.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/005/ERR1994965/ERR1994965.fastq.gz,4e14966124f7211f96fda37c50d38db9,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.noCHX.ribo.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.noCHX.ribo.1,<NA>,E-MTAB-5794:wt.N.noCHX.ribo.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100\",<NA>,<NA>,<NA>,<NA>,ERS1770609,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/005/ERR1994965,892395507,ftp.sra.ebi.ac.uk/vol1/err/ERR199/005/ERR1994965,ftp.sra.ebi.ac.uk/vol1/err/ERR199/005/ERR1994965,0fa361486319cef90bba643e4ab359d4,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994965/h-_N_noCHX_exp05_24530671-23_merged.fastq.gz,1083575475,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994965/h-_N_noCHX_exp05_24530671-23_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994965/h-_N_noCHX_exp05_24530671-23_merged.fastq.gz,<NA>,3e7703e2d9bead9b3c2aa5e6bfd4b7da,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054835,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106717,wt.N.noCHX.ribo.3,Illumina HiSeq 2000,ERR1994966,32968604,1648430200,SAMEA104106717,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.N.noCHX.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/006/ERR1994966/ERR1994966.fastq.gz,708584838,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/006/ERR1994966/ERR1994966.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/006/ERR1994966/ERR1994966.fastq.gz,7a946a2a13f7722ed5182215193407d3,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.N.noCHX.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.N.noCHX.ribo.3,<NA>,E-MTAB-5794:wt.N.noCHX.ribo.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100\",<NA>,<NA>,<NA>,<NA>,ERS1770610,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/006/ERR1994966,549410966,ftp.sra.ebi.ac.uk/vol1/err/ERR199/006/ERR1994966,ftp.sra.ebi.ac.uk/vol1/err/ERR199/006/ERR1994966,aa28000c05057d38442fa44bcd29a311,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994966/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,614854275,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994966/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994966/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,<NA>,16a064d8c45d9eb04890f741fc2f6a5e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054836,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106718,wt.noN.CHX.mrna.1,Illumina HiSeq 2000,ERR1994967,21546857,1077342850,SAMEA104106718,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.CHX.mrna.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/007/ERR1994967/ERR1994967.fastq.gz,806586598,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/007/ERR1994967/ERR1994967.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/007/ERR1994967/ERR1994967.fastq.gz,08431fd32793730f9681f3fea0743324,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.CHX.mrna.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.CHX.mrna.1,<NA>,E-MTAB-5794:wt.noN.CHX.mrna.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\",<NA>,<NA>,<NA>,<NA>,ERS1770611,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/007/ERR1994967,513308843,ftp.sra.ebi.ac.uk/vol1/err/ERR199/007/ERR1994967,ftp.sra.ebi.ac.uk/vol1/err/ERR199/007/ERR1994967,e1665cc3b0151e7c1f484e1cf4d64f09,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994967/wt_noN_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT083_GCTCCTTG.fq.gz,750304102,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994967/wt_noN_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT083_GCTCCTTG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994967/wt_noN_CHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT083_GCTCCTTG.fq.gz,<NA>,34dca6e9e68ca958c8cc92e70593cfc9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054837,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106719,wt.noN.CHX.mrna.3,Illumina HiSeq 2000,ERR1994968,33734733,1686736650,SAMEA104106719,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.CHX.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/008/ERR1994968/ERR1994968.fastq.gz,1210607260,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/008/ERR1994968/ERR1994968.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/008/ERR1994968/ERR1994968.fastq.gz,eafabf6e43e1ef29b94acb5fa031e00f,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.CHX.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.CHX.mrna.3,<NA>,E-MTAB-5794:wt.noN.CHX.mrna.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\",<NA>,<NA>,<NA>,<NA>,ERS1770612,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/008/ERR1994968,750146237,ftp.sra.ebi.ac.uk/vol1/err/ERR199/008/ERR1994968,ftp.sra.ebi.ac.uk/vol1/err/ERR199/008/ERR1994968,e5aca9222f168e1071f1af5bd73d180d,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994968/mrna_mN_pCHX_exp26_SLX-13147_RPI_TAGTGACT.fq.gz,1145597785,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994968/mrna_mN_pCHX_exp26_SLX-13147_RPI_TAGTGACT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994968/mrna_mN_pCHX_exp26_SLX-13147_RPI_TAGTGACT.fq.gz,<NA>,1f51017df36590a5ec4fc8a950627b23,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054838,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,NextSeq 550 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106720,wt.noN.CHX.ribo.1,NextSeq 550,ERR1994969,83235717,4161785850,SAMEA104106720,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.CHX.ribo.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/009/ERR1994969/ERR1994969.fastq.gz,2976594762,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/009/ERR1994969/ERR1994969.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/009/ERR1994969/ERR1994969.fastq.gz,cf6a8a5f98b413b5cdcf6f556c1006fd,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.CHX.ribo.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.CHX.ribo.1,<NA>,E-MTAB-5794:wt.noN.CHX.ribo.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). F\",<NA>,<NA>,<NA>,<NA>,ERS1770613,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/009/ERR1994969,2232558012,ftp.sra.ebi.ac.uk/vol1/err/ERR199/009/ERR1994969,ftp.sra.ebi.ac.uk/vol1/err/ERR199/009/ERR1994969,9844a6537f22f7eccfb17bba7e51245f,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994969/wt_noN_NH4_CHX_fastfreeze_exp05_ribo_11847X4_150923_D00294_0200_BC7V3HANXX_7.txt.gz,2729772383,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994969/wt_noN_NH4_CHX_fastfreeze_exp05_ribo_11847X4_150923_D00294_0200_BC7V3HANXX_7.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994969/wt_noN_NH4_CHX_fastfreeze_exp05_ribo_11847X4_150923_D00294_0200_BC7V3HANXX_7.txt.gz,<NA>,09f4c60319275fcf7ea113e157ec31b8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054839,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106721,wt.noN.CHX.ribo.3,Illumina HiSeq 2000,ERR1994970,31175890,1558794500,SAMEA104106721,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.CHX.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/000/ERR1994970/ERR1994970.fastq.gz,690408708,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/000/ERR1994970/ERR1994970.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/000/ERR1994970/ERR1994970.fastq.gz,304b7defcf34e505f6d947207dbc8011,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.CHX.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.CHX.ribo.3,<NA>,E-MTAB-5794:wt.noN.CHX.ribo.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Cells were grown in the presence of CHX at 100 ug/ml for 5 minutes before colletion Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). F\",<NA>,<NA>,<NA>,<NA>,ERS1770614,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/000/ERR1994970,528601857,ftp.sra.ebi.ac.uk/vol1/err/ERR199/000/ERR1994970,ftp.sra.ebi.ac.uk/vol1/err/ERR199/000/ERR1994970,3d98d6f5d394de5217e2d4e730860c26,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994970/mono_mN_pCHX_exp26_SLX-13144.RPI24.HJM3GBBXX.s_3.r_1.fq.gz,601679718,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994970/mono_mN_pCHX_exp26_SLX-13144.RPI24.HJM3GBBXX.s_3.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994970/mono_mN_pCHX_exp26_SLX-13144.RPI24.HJM3GBBXX.s_3.r_1.fq.gz,<NA>,6a08e3bcfe02c4cc9d8a0129c2107d10,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054840,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106722,wt.noN.noCHX.mrna.1,Illumina HiSeq 2000,ERR1994971,18195992,909799600,SAMEA104106722,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.noCHX.mrna.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/001/ERR1994971/ERR1994971.fastq.gz,684190038,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/001/ERR1994971/ERR1994971.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/001/ERR1994971/ERR1994971.fastq.gz,bbfb54c543b493b60d789904399363ae,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.noCHX.mrna.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.noCHX.mrna.1,<NA>,E-MTAB-5794:wt.noN.noCHX.mrna.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\",<NA>,<NA>,<NA>,<NA>,ERS1770615,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/001/ERR1994971,436393081,ftp.sra.ebi.ac.uk/vol1/err/ERR199/001/ERR1994971,ftp.sra.ebi.ac.uk/vol1/err/ERR199/001/ERR1994971,053e99117f28b90f87fae18f8a8e1d76,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994971/wt_noN_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT070_GATCTCTT.fq.gz,636700835,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994971/wt_noN_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT070_GATCTCTT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994971/wt_noN_noCHX_fastfreeze_mrna_exp_05_SLX-9971_NXHT070_GATCTCTT.fq.gz,<NA>,1f1340c21e4df8afd8454dab3bb49822,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054841,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106723,wt.noN.noCHX.mrna.3,Illumina HiSeq 2000,ERR1994972,23231253,1161562650,SAMEA104106723,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.noCHX.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/002/ERR1994972/ERR1994972.fastq.gz,841393565,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/002/ERR1994972/ERR1994972.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/002/ERR1994972/ERR1994972.fastq.gz,b868b04a82cafc2f51b81beef5114d9b,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.noCHX.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.noCHX.mrna.3,<NA>,E-MTAB-5794:wt.noN.noCHX.mrna.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\",<NA>,<NA>,<NA>,<NA>,ERS1770616,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/002/ERR1994972,521879358,ftp.sra.ebi.ac.uk/vol1/err/ERR199/002/ERR1994972,ftp.sra.ebi.ac.uk/vol1/err/ERR199/002/ERR1994972,97498d30bfe65d90f747760949f40c59,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994972/mrna_mN_mCHX_exp26_SLX-13147_RPI_TCGTTAGC.fq.gz,794564416,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994972/mrna_mN_mCHX_exp26_SLX-13147_RPI_TCGTTAGC.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994972/mrna_mN_mCHX_exp26_SLX-13147_RPI_TCGTTAGC.fq.gz,<NA>,025b5818871045ddac77844186f3279a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054842,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106724,wt.noN.noCHX.ribo.1,Illumina HiSeq 2000,ERR1994973,40848270,2042413500,SAMEA104106724,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.noCHX.ribo.1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/003/ERR1994973/ERR1994973.fastq.gz,1162167018,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/003/ERR1994973/ERR1994973.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/003/ERR1994973/ERR1994973.fastq.gz,97bfcbbc1587ee4e9cdef5901a96c6ad,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.noCHX.ribo.1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.noCHX.ribo.1,<NA>,E-MTAB-5794:wt.noN.noCHX.ribo.1,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fra\",<NA>,<NA>,<NA>,<NA>,ERS1770617,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/003/ERR1994973,906144237,ftp.sra.ebi.ac.uk/vol1/err/ERR199/003/ERR1994973,ftp.sra.ebi.ac.uk/vol1/err/ERR199/003/ERR1994973,ac246f805ab758cd857c95880c9938f6,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994973/h-_noN_noCHX_exp05_24530674-24_merged.fastq.gz,1058842485,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994973/h-_noN_noCHX_exp05_24530674-24_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994973/h-_noN_noCHX_exp05_24530674-24_merged.fastq.gz,<NA>,7138d88b1bb3bd4be532927a75478fc3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21099,ERX2054843,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,Illumina HiSeq 2000 sequencing; Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA104106725,wt.noN.noCHX.ribo.3,Illumina HiSeq 2000,ERR1994974,31871091,1593554550,SAMEA104106725,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5794:wt.noN.noCHX.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR199/004/ERR1994974/ERR1994974.fastq.gz,693940038,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/004/ERR1994974/ERR1994974.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR199/004/ERR1994974/ERR1994974.fastq.gz,3ad51405942aaecd04f6618422ccd4dd,2017-05-31,2017-09-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noN.noCHX.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5794:wt.noN.noCHX.ribo.3,<NA>,E-MTAB-5794:wt.noN.noCHX.ribo.3,<NA>,\"Protocols: Cells were grown at a temperature of 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795) containing NH4Cl as a nitrogen source.  Cells were washed with EMM containing no NH4Cl (EMM-N), resuspended in EMM-N, and grown at 32C for 60 minutes. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel.  Gel purified RNA fra\",<NA>,<NA>,<NA>,<NA>,ERS1770618,ERP023328,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR199/004/ERR1994974,538080074,ftp.sra.ebi.ac.uk/vol1/err/ERR199/004/ERR1994974,ftp.sra.ebi.ac.uk/vol1/err/ERR199/004/ERR1994974,d5eff10fa646e8cf5c217d9548269efa,<NA>,E-MTAB-5794,Effects of cycloheximide (CHX) on ribosome profiling experiments in Schizosaccharomyces pombe,<NA>,<NA>,ERA947782,fasp.sra.ebi.ac.uk:/vol1/run/ERR199/ERR1994974/mono_mN_mCHX_exp26_SLX-13144.RPI23.HJM3GBBXX.s_3.r_1.fq.gz,603833538,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994974/mono_mN_mCHX_exp26_SLX-13144.RPI23.HJM3GBBXX.s_3.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR199/ERR1994974/mono_mN_mCHX_exp26_SLX-13144.RPI23.HJM3GBBXX.s_3.r_1.fq.gz,<NA>,0bca2c2637e94d4be54215a4d2c4106d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063387,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118808,gcn2.AT.mrna.3,NextSeq 550,ERR2003518,37068610,2804773487,SAMEA104118808,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.AT.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/008/ERR2003518/ERR2003518.fastq.gz,1893968511,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003518/ERR2003518.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003518/ERR2003518.fastq.gz,2b550100b972d70287e65d615443dfaa,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.AT.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.AT.mrna.3,<NA>,E-MTAB-5810:gcn2.AT.mrna.3,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782701,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/008/ERR2003518,1296680135,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003518,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003518,05c3e57987ddc9ce8c662182c0451ef4,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003518/gcn2_3AT_07_mRNA-230315-3_S7.fastq.gz,1794478551,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003518/gcn2_3AT_07_mRNA-230315-3_S7.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003518/gcn2_3AT_07_mRNA-230315-3_S7.fastq.gz,<NA>,ce22d1f5b16b9330845dca2a52314ef4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063388,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118809,gcn2.AT.mrna.4,NextSeq 550,ERR2003519,32243483,2439588430,SAMEA104118809,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.AT.mrna.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/009/ERR2003519/ERR2003519.fastq.gz,1431433687,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003519/ERR2003519.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003519/ERR2003519.fastq.gz,e2c0a6e6559c0d9b1f519df8f98392c9,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.AT.mrna.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.AT.mrna.4,<NA>,E-MTAB-5810:gcn2.AT.mrna.4,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782702,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/009/ERR2003519,976729722,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003519,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003519,eb054ec6ff766dbd8b4b4c29029711a1,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003519/gcn2-3AT_16_mRNA-050615-18_S18.fastq.gz,1347495524,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003519/gcn2-3AT_16_mRNA-050615-18_S18.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003519/gcn2-3AT_16_mRNA-050615-18_S18.fastq.gz,<NA>,595135a2e69a7b32a01d93c9226693b9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063389,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118810,gcn2.AT.ribo.3,NextSeq 550,ERR2003520,31434722,1571736100,SAMEA104118810,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.AT.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/000/ERR2003520/ERR2003520.fastq.gz,952761440,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003520/ERR2003520.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003520/ERR2003520.fastq.gz,1a398e3601a225d9bc0d817b5220fbab,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.AT.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.AT.ribo.3,<NA>,E-MTAB-5810:gcn2.AT.ribo.3,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments\",<NA>,<NA>,<NA>,<NA>,ERS1782703,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/000/ERR2003520,693153509,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003520,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003520,16d8165f05ae6b51473d1063ca89f631,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003520/gcn2_3AT_exp07_24530672-16_merged.fastq.gz,872386677,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003520/gcn2_3AT_exp07_24530672-16_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003520/gcn2_3AT_exp07_24530672-16_merged.fastq.gz,<NA>,b3f5937c547123c93b45789e6fa63d9a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063390,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118811,gcn2.AT.ribo.4,NextSeq 550,ERR2003521,56596125,2829806250,SAMEA104118811,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.AT.ribo.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/001/ERR2003521/ERR2003521.fastq.gz,2075087720,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003521/ERR2003521.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003521/ERR2003521.fastq.gz,668380c066c3e628525f58053e69d539,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.AT.ribo.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.AT.ribo.4,<NA>,E-MTAB-5810:gcn2.AT.ribo.4,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments\",<NA>,<NA>,<NA>,<NA>,ERS1782704,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/001/ERR2003521,1519052633,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003521,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003521,b42a8bc4f5d248a44d3185b76cef4822,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003521/gcn2_3AT_exp16_ribo_11847X2_150923_D00294_0200_BC7V3HANXX_7.txt.gz,1904816558,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003521/gcn2_3AT_exp16_ribo_11847X2_150923_D00294_0200_BC7V3HANXX_7.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003521/gcn2_3AT_exp16_ribo_11847X2_150923_D00294_0200_BC7V3HANXX_7.txt.gz,<NA>,947ac9403e3ae4b2262626768f5efbe5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063391,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118812,gcn2.noAT.mrna.3,NextSeq 550,ERR2003522,16204245,1226035737,SAMEA104118812,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.noAT.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/002/ERR2003522/ERR2003522.fastq.gz,833872893,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003522/ERR2003522.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003522/ERR2003522.fastq.gz,570a362ba4857754da0011c10ff05b34,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.noAT.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.noAT.mrna.3,<NA>,E-MTAB-5810:gcn2.noAT.mrna.3,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782705,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/002/ERR2003522,569859294,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003522,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003522,2b093eaee2aaf8c9287c949eda1203fe,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003522/gcn2_no3AT_07_mRNA-230315-12_S17.fastq.gz,790954260,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003522/gcn2_no3AT_07_mRNA-230315-12_S17.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003522/gcn2_no3AT_07_mRNA-230315-12_S17.fastq.gz,<NA>,d350bf2756fb19d68cec31dbb782947c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063392,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118813,gcn2.noAT.mrna.4,NextSeq 550,ERR2003523,33797257,2557225027,SAMEA104118813,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.noAT.mrna.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/003/ERR2003523/ERR2003523.fastq.gz,1505516244,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003523/ERR2003523.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003523/ERR2003523.fastq.gz,19563b6ddb5d9704879d3cb999ec0907,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.noAT.mrna.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.noAT.mrna.4,<NA>,E-MTAB-5810:gcn2.noAT.mrna.4,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782706,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/003/ERR2003523,1025536797,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003523,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003523,cfb4a9dbe479d7d8102772f93aff19bd,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003523/gcn2-no3AT_16_mRNA-050615-17_S9.fastq.gz,1416163883,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003523/gcn2-no3AT_16_mRNA-050615-17_S9.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003523/gcn2-no3AT_16_mRNA-050615-17_S9.fastq.gz,<NA>,0e5c65014fa3658348761bb7330e44dc,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063393,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118814,gcn2.noAT.ribo.3,NextSeq 550,ERR2003524,31214960,1560748000,SAMEA104118814,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.noAT.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/004/ERR2003524/ERR2003524.fastq.gz,959974227,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003524/ERR2003524.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003524/ERR2003524.fastq.gz,f04a4787d1fcd21a7da8c72db1540286,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.noAT.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.noAT.ribo.3,<NA>,E-MTAB-5810:gcn2.noAT.ribo.3,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782707,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/004/ERR2003524,684675507,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003524,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003524,94d256c35d704958a4f8eebeccbe3df9,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003524/gcn2_no3AT_exp07_24530667-17_merged.fastq.gz,880833027,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003524/gcn2_no3AT_exp07_24530667-17_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003524/gcn2_no3AT_exp07_24530667-17_merged.fastq.gz,<NA>,0fdb3caac64c84b5abad76cb8c81d1b3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063394,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118815,gcn2.noAT.ribo.4,NextSeq 550,ERR2003525,106865118,5343255900,SAMEA104118815,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:gcn2.noAT.ribo.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/005/ERR2003525/ERR2003525.fastq.gz,3862724769,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003525/ERR2003525.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003525/ERR2003525.fastq.gz,a1685d1f1ebc6099feebe9909ed7f8a6,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,gcn2.noAT.ribo.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:gcn2.noAT.ribo.4,<NA>,E-MTAB-5810:gcn2.noAT.ribo.4,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782708,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/005/ERR2003525,2868222256,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003525,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003525,df7074e5be6140a00d9d02de58afca65,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003525/gcn2_no3AT_exp16_ribo_11847X1_150923_D00294_0200_BC7V3HANXX_7.txt.gz,3549142331,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003525/gcn2_no3AT_exp16_ribo_11847X1_150923_D00294_0200_BC7V3HANXX_7.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003525/gcn2_no3AT_exp16_ribo_11847X1_150923_D00294_0200_BC7V3HANXX_7.txt.gz,<NA>,7812b70f1a7633621aec21bbc8d967ea,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063395,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118816,wt.AT.CHX.mrna.11,NextSeq 550,ERR2003526,52513972,2625698600,SAMEA104118816,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.CHX.mrna.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/006/ERR2003526/ERR2003526.fastq.gz,1177305229,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003526/ERR2003526.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003526/ERR2003526.fastq.gz,7ee6488a9803eb2136fbcda0a0d21569,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.CHX.mrna.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.CHX.mrna.11,<NA>,E-MTAB-5810:wt.AT.CHX.mrna.11,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782709,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/006/ERR2003526,1040367179,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003526,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003526,b3f7a3a6022ce2c39d7ed76bbf6ad02d,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003526/mRNApCpATe23_SLX-12423_NXHT005_ACAGTGGT.fq.gz,1023550001,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003526/mRNApCpATe23_SLX-12423_NXHT005_ACAGTGGT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003526/mRNApCpATe23_SLX-12423_NXHT005_ACAGTGGT.fq.gz,<NA>,cff16eedab8eaa3fe661551e4f93f031,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063396,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118817,wt.AT.CHX.mrna.13,NextSeq 550,ERR2003527,35611500,1780575000,SAMEA104118817,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.CHX.mrna.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/007/ERR2003527/ERR2003527.fastq.gz,1275555809,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003527/ERR2003527.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003527/ERR2003527.fastq.gz,8581ac36ff6f90577e477a5e02f430a9,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.CHX.mrna.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.CHX.mrna.13,<NA>,E-MTAB-5810:wt.AT.CHX.mrna.13,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782710,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/007/ERR2003527,788706819,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003527,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003527,7df1c844552de47347aedd99041c304f,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003527/mrna_pAT_pCHX_exp26_SLX-13147_RPI_TTCAGCTC.fq.gz,1199379761,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003527/mrna_pAT_pCHX_exp26_SLX-13147_RPI_TTCAGCTC.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003527/mrna_pAT_pCHX_exp26_SLX-13147_RPI_TTCAGCTC.fq.gz,<NA>,cfcfabfb6363f650210f470476b089a8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063397,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118818,wt.AT.CHX.ribo.11,NextSeq 550,ERR2003528,62968779,3148438950,SAMEA104118818,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.CHX.ribo.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/008/ERR2003528/ERR2003528.fastq.gz,1666209345,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003528/ERR2003528.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003528/ERR2003528.fastq.gz,9fd70e70e139a875dbe57f2c06a55e4f,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.CHX.ribo.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.CHX.ribo.11,<NA>,E-MTAB-5810:wt.AT.CHX.ribo.11,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782711,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/008/ERR2003528,1222310242,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003528,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003528,d27e5494bbdf710a5b5cc7cde51f42f4,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003528/RPFpCpATe23_SLX-12983.RPI29.HGLNNBBXX.s_8.r_1.fq.gz,1462489095,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003528/RPFpCpATe23_SLX-12983.RPI29.HGLNNBBXX.s_8.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003528/RPFpCpATe23_SLX-12983.RPI29.HGLNNBBXX.s_8.r_1.fq.gz,<NA>,1a4a395ae1f9fb2cecbe9f114649ab0e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063398,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118819,wt.AT.CHX.ribo.13,NextSeq 550,ERR2003529,28486176,1424308800,SAMEA104118819,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.CHX.ribo.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/009/ERR2003529/ERR2003529.fastq.gz,660781571,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003529/ERR2003529.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003529/ERR2003529.fastq.gz,0d08431c8d52085ce32156c330612a5f,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.CHX.ribo.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.CHX.ribo.13,<NA>,E-MTAB-5810:wt.AT.CHX.ribo.13,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782712,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/009/ERR2003529,472720418,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003529,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003529,a3782428ea352caddb8bd41f79909ed2,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003529/mono_pAT_pCHX_exp26_SLX-13146.RPI20.HJM3GBBXX.s_5.r_1.fq.gz,579227971,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003529/mono_pAT_pCHX_exp26_SLX-13146.RPI20.HJM3GBBXX.s_5.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003529/mono_pAT_pCHX_exp26_SLX-13146.RPI20.HJM3GBBXX.s_5.r_1.fq.gz,<NA>,d8c0b57c3a9c40b46463d64105ae401b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063399,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118820,wt.AT.mrna.2B,NextSeq 550,ERR2003530,39443224,2984603676,SAMEA104118820,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.mrna.2B_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/000/ERR2003530/ERR2003530.fastq.gz,1743412044,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003530/ERR2003530.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003530/ERR2003530.fastq.gz,1a5548885934e5433503f169752a7e74,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.mrna.2B_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.mrna.2B,<NA>,E-MTAB-5810:wt.AT.mrna.2B,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782713,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/000/ERR2003530,1181846323,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003530,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003530,a843e005dbb8781d73c22202a79c50e0,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003530/h90-3AT_18_mRNA-050615-22_S15.fastq.gz,1640096403,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003530/h90-3AT_18_mRNA-050615-22_S15.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003530/h90-3AT_18_mRNA-050615-22_S15.fastq.gz,<NA>,ba46722c4e80b2096d71843ff4853b40,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063400,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118821,wt.AT.mrna.3,NextSeq 550,ERR2003531,14151645,1070787968,SAMEA104118821,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/001/ERR2003531/ERR2003531.fastq.gz,732779452,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003531/ERR2003531.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003531/ERR2003531.fastq.gz,18f29a7fbe2aa2e264d75c0024f9a715,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.mrna.3,<NA>,E-MTAB-5810:wt.AT.mrna.3,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782714,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/001/ERR2003531,497998964,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003531,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003531,057fc17c8b972d80b503dce5b1f75381,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003531/h90_3AT_07_mRNA-230315-10_S19.fastq.gz,695485993,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003531/h90_3AT_07_mRNA-230315-10_S19.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003531/h90_3AT_07_mRNA-230315-10_S19.fastq.gz,<NA>,9c72a16c05123dad6b0abda521b3dc63,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063401,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118822,wt.AT.mrna.4,NextSeq 550,ERR2003532,39994820,3026173391,SAMEA104118822,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.mrna.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/002/ERR2003532/ERR2003532.fastq.gz,1755221335,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003532/ERR2003532.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003532/ERR2003532.fastq.gz,ea2439c76183c1c13778cd649904800a,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.mrna.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.mrna.4,<NA>,E-MTAB-5810:wt.AT.mrna.4,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782715,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/002/ERR2003532,1190387316,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003532,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003532,337be00db2bcf2a4d6f39a2af6347baa,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003532/h90-3AT_16_mRNA-050615-20_S14.fastq.gz,1650311357,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003532/h90-3AT_16_mRNA-050615-20_S14.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003532/h90-3AT_16_mRNA-050615-20_S14.fastq.gz,<NA>,597196db20e6ed8243e6e544cc93dc9e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063402,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118823,wt.AT.noCHX.mrna.11,NextSeq 550,ERR2003533,18348290,917414500,SAMEA104118823,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.noCHX.mrna.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz,557797042,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz,72d626dc55ffe8a99a45b0fce9e9de1a,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.noCHX.mrna.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.noCHX.mrna.11,<NA>,E-MTAB-5810:wt.AT.noCHX.mrna.11,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782716,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/003/ERR2003533,371473051,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003533,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003533,9f5750bd2a6ecb3f75ed5629e97425f4,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz,504798817,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz,<NA>,332d3d0d200fe86838b2670ce40ea5f9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063403,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118824,wt.AT.noCHX.mrna.13,NextSeq 550,ERR2003534,27306569,1365328450,SAMEA104118824,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.noCHX.mrna.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz,985937947,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz,0cc70783f4f8898040cff08095e2acb0,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.noCHX.mrna.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.noCHX.mrna.13,<NA>,E-MTAB-5810:wt.AT.noCHX.mrna.13,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782717,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/004/ERR2003534,612489209,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003534,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003534,2640c7ef78636539ac882aa5f02e322a,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz,931904188,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz,<NA>,ea2dcf642b3f3321cf4b35251399c051,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063404,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118825,wt.AT.noCHX.ribo.11,NextSeq 550,ERR2003535,119503388,5975169400,SAMEA104118825,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.noCHX.ribo.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz,3043126397,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz,402f77beac3bc9923185ed7fcd2acf59,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.noCHX.ribo.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.noCHX.ribo.11,<NA>,E-MTAB-5810:wt.AT.noCHX.ribo.11,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782718,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/005/ERR2003535,2287012468,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003535,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003535,0dbe31c34a7870da7d0de1f343064e77,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz,2667502124,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz,<NA>,27966036d32945f3c6da7f60a43951fd,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063405,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118826,wt.AT.noCHX.ribo.13,NextSeq 550,ERR2003536,31631553,1581577650,SAMEA104118826,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.noCHX.ribo.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/006/ERR2003536/ERR2003536.fastq.gz,699606031,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003536/ERR2003536.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003536/ERR2003536.fastq.gz,499bbf1aa42ba38f52798403a5660183,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.noCHX.ribo.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.noCHX.ribo.13,<NA>,E-MTAB-5810:wt.AT.noCHX.ribo.13,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782719,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/006/ERR2003536,524549808,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003536,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003536,63e2d7b8f92dcf1508d715b73d9df6d7,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003536/mono_pAT_mCHX_exp26_SLX-13146.RPI19.HJM3GBBXX.s_5.r_1.fq.gz,609988153,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003536/mono_pAT_mCHX_exp26_SLX-13146.RPI19.HJM3GBBXX.s_5.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003536/mono_pAT_mCHX_exp26_SLX-13146.RPI19.HJM3GBBXX.s_5.r_1.fq.gz,<NA>,565632529106cc7c21a6aad361553481,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063406,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118827,wt.AT.ribo.2-1,NextSeq 550,ERR2003537,17283910,881479182,SAMEA104118827,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.ribo.2-1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/007/ERR2003537/ERR2003537.fastq.gz,589659698,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003537/ERR2003537.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003537/ERR2003537.fastq.gz,73241f735dd4c2b4f99c2d793c3f49c5,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.ribo.2-1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.ribo.2-1,<NA>,E-MTAB-5810:wt.AT.ribo.2-1,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments\",<NA>,<NA>,<NA>,<NA>,ERS1782720,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/007/ERR2003537,445091210,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003537,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003537,a1d701d5691c10fc8a97a3628754fa8d,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003537/CD-RiboSeq-7.fastq.ACG.fq.gz,540425982,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003537/CD-RiboSeq-7.fastq.ACG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003537/CD-RiboSeq-7.fastq.ACG.fq.gz,<NA>,16ddef4ee3fc7c5e45206f424b15904f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063407,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118828,wt.AT.ribo.2-2,NextSeq 550,ERR2003538,60683650,3034182500,SAMEA104118828,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.ribo.2-2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/008/ERR2003538/ERR2003538.fastq.gz,1857856864,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003538/ERR2003538.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003538/ERR2003538.fastq.gz,1ab488c931419ed2fc80d283d0e54f00,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.ribo.2-2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.ribo.2-2,<NA>,E-MTAB-5810:wt.AT.ribo.2-2,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782721,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/008/ERR2003538,1437803587,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003538,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003538,2a6f89145bf6d5c69ad1623f75e5c3a6,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003538/11201X1_141113_D00294_0141_BC5U3MANXX_8.ACG.fq.gz,1660794933,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003538/11201X1_141113_D00294_0141_BC5U3MANXX_8.ACG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003538/11201X1_141113_D00294_0141_BC5U3MANXX_8.ACG.fq.gz,<NA>,39e2a0c5a2dd927544728d3307c9d9b7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063408,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118829,wt.AT.ribo.3,NextSeq 550,ERR2003539,37185178,1859258900,SAMEA104118829,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/009/ERR2003539/ERR2003539.fastq.gz,1098948044,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003539/ERR2003539.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003539/ERR2003539.fastq.gz,467ddb35049f6a2337e4118c83d9c826,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.ribo.3,<NA>,E-MTAB-5810:wt.AT.ribo.3,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments\",<NA>,<NA>,<NA>,<NA>,ERS1782722,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/009/ERR2003539,818878229,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003539,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003539,df041f31a79e9aeeed3ca46813de2a54,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003539/h90_3AT_exp07_24530669-14_merged.fastq.gz,1004387847,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003539/h90_3AT_exp07_24530669-14_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003539/h90_3AT_exp07_24530669-14_merged.fastq.gz,<NA>,3f6594a2c9eef2cd20c51dbf324062c0,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063409,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118830,wt.AT.ribo.4,NextSeq 550,ERR2003540,68616943,3430847150,SAMEA104118830,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.AT.ribo.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/000/ERR2003540/ERR2003540.fastq.gz,2500974085,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003540/ERR2003540.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003540/ERR2003540.fastq.gz,7bf449c3ff4638fa6a317e4ad17a2a7d,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.AT.ribo.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.AT.ribo.4,<NA>,E-MTAB-5810:wt.AT.ribo.4,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Cells were grown in EMM2 (Moreno et al. Methods Enzymology 194: 795) in the presence of 10 mM 3-AT for 60 minutes at 32C.  This treatment mimics histidine starvation. Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments\",<NA>,<NA>,<NA>,<NA>,ERS1782723,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/000/ERR2003540,1843866405,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003540,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003540,48c3c61d387817c018f69aeee09089c8,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003540/wt_3AT_exp16_ribo_11847X3_150923_D00294_0200_BC7V3HANXX_7.txt.gz,2294020723,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003540/wt_3AT_exp16_ribo_11847X3_150923_D00294_0200_BC7V3HANXX_7.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003540/wt_3AT_exp16_ribo_11847X3_150923_D00294_0200_BC7V3HANXX_7.txt.gz,<NA>,57b4ef83c61df64e06901c9d9a859c6d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063410,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118831,wt.noAT.CHX.mrna.11,NextSeq 550,ERR2003541,4368155,218407750,SAMEA104118831,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.CHX.mrna.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/001/ERR2003541/ERR2003541.fastq.gz,130062464,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003541/ERR2003541.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003541/ERR2003541.fastq.gz,655097cad43649361b15b68be9decd5b,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.CHX.mrna.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.CHX.mrna.11,<NA>,E-MTAB-5810:wt.noAT.CHX.mrna.11,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782724,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/001/ERR2003541,90380475,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003541,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003541,0e012cb5e21877200e421b273bf9ec6e,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003541/mRNApCmATe23_SLX-12423_NXHT003_TTAGGCAT.fq.gz,118154679,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003541/mRNApCmATe23_SLX-12423_NXHT003_TTAGGCAT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003541/mRNApCmATe23_SLX-12423_NXHT003_TTAGGCAT.fq.gz,<NA>,e259265a6862a9cad732fc6c89cb89aa,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063411,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118832,wt.noAT.CHX.mrna.13,NextSeq 550,ERR2003542,36240950,1812047500,SAMEA104118832,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.CHX.mrna.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/002/ERR2003542/ERR2003542.fastq.gz,1300747744,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003542/ERR2003542.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003542/ERR2003542.fastq.gz,064d7e59cb7f24e8faf93890ccafa828,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.CHX.mrna.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.CHX.mrna.13,<NA>,E-MTAB-5810:wt.noAT.CHX.mrna.13,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782725,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/002/ERR2003542,806658368,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003542,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003542,b7ff110b8ec1b68705c23321ffc1c384,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003542/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,1225381442,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003542/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003542/mrna_mAT_pN_pCHX_exp26_SLX-13147_RPI_GAGGTGCT.fq.gz,<NA>,cdf5e357aca1a3ba53528fa99a8a76ae,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063412,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118833,wt.noAT.CHX.ribo.11,NextSeq 550,ERR2003543,32008211,1600410550,SAMEA104118833,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.CHX.ribo.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/003/ERR2003543/ERR2003543.fastq.gz,848061258,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003543/ERR2003543.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003543/ERR2003543.fastq.gz,1525219220ef1170f37680d6a3f7d590,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.CHX.ribo.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.CHX.ribo.11,<NA>,E-MTAB-5810:wt.noAT.CHX.ribo.11,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782726,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/003/ERR2003543,624070632,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003543,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003543,312299d9c8dd7633a6b39cb89768b35e,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003543/RPFpCmATe23_SLX-12983.RPI28.HGLNNBBXX.s_8.r_1.fq.gz,752023572,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003543/RPFpCmATe23_SLX-12983.RPI28.HGLNNBBXX.s_8.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003543/RPFpCmATe23_SLX-12983.RPI28.HGLNNBBXX.s_8.r_1.fq.gz,<NA>,c602c03e9f371082e570cddfa969c589,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063413,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118834,wt.noAT.CHX.ribo.13,NextSeq 550,ERR2003544,26742065,1337103250,SAMEA104118834,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.CHX.ribo.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/004/ERR2003544/ERR2003544.fastq.gz,635231766,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003544/ERR2003544.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003544/ERR2003544.fastq.gz,e4d53be20e3954cc312ee278e50f83e3,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.CHX.ribo.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.CHX.ribo.13,<NA>,E-MTAB-5810:wt.noAT.CHX.ribo.13,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782727,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/004/ERR2003544,457766341,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003544,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003544,ca5121a2da40e795d052155dfa9df1aa,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003544/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,558194785,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003544/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003544/mono_mAT_pN_pCHX_exp26_SLX-13145.RPI22.HJM3GBBXX.s_4.r_1.fq.gz,<NA>,ef4ec4280601e2884d421aadb1ab7425,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063414,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118835,wt.noAT.mrna.2B,NextSeq 550,ERR2003545,24001975,1816117196,SAMEA104118835,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.mrna.2B_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/005/ERR2003545/ERR2003545.fastq.gz,1060397446,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003545/ERR2003545.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003545/ERR2003545.fastq.gz,06959834055ca25ab1ecbe11f21d0801,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.mrna.2B_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.mrna.2B,<NA>,E-MTAB-5810:wt.noAT.mrna.2B,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782728,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/005/ERR2003545,720112602,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003545,ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003545,e27fe92fb580c9ff4bf3e588a7282b8f,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003545/h90-no3AT_18_mRNA-050615-23_S19.fastq.gz,997311595,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003545/h90-no3AT_18_mRNA-050615-23_S19.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003545/h90-no3AT_18_mRNA-050615-23_S19.fastq.gz,<NA>,34a9115e73844b6e9e39053e2c94081e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063415,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118836,wt.noAT.mrna.3,NextSeq 550,ERR2003546,15509062,1173469392,SAMEA104118836,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.mrna.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/006/ERR2003546/ERR2003546.fastq.gz,803924922,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003546/ERR2003546.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/006/ERR2003546/ERR2003546.fastq.gz,dac054247d9664db1a04a01c0085205d,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.mrna.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.mrna.3,<NA>,E-MTAB-5810:wt.noAT.mrna.3,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782729,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/006/ERR2003546,549215848,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003546,ftp.sra.ebi.ac.uk/vol1/err/ERR200/006/ERR2003546,759823058aa253b0e0962b3a9cc6cdca,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003546/h90_no3AT_07_mRNA-230315-1_S20.fastq.gz,762817160,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003546/h90_no3AT_07_mRNA-230315-1_S20.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003546/h90_no3AT_07_mRNA-230315-1_S20.fastq.gz,<NA>,5636a268bb7e916d7d9baa534cbfe73d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063416,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118837,wt.noAT.mrna.4,NextSeq 550,ERR2003547,23729256,1795439617,SAMEA104118837,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.mrna.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/007/ERR2003547/ERR2003547.fastq.gz,1072582617,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003547/ERR2003547.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/007/ERR2003547/ERR2003547.fastq.gz,0280cc7a0523d8627476ef6531490bef,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.mrna.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.mrna.4,<NA>,E-MTAB-5810:wt.noAT.mrna.4,<NA>,Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Total RNA was extracted using a hot phenol extraction method as described in Lyne et al. (2003) BMC Genomics 4:27. Clean up and DNase treatment were performed on with Purelink RNA microcolumns (Life Technologies) following the manufacturer’s instructions.  Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782730,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/007/ERR2003547,729745793,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003547,ftp.sra.ebi.ac.uk/vol1/err/ERR200/007/ERR2003547,e45bbe6c77200db5c1ff08f40bcb53ae,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003547/h90-no3AT_16_mRNA-050615-19_S13.fastq.gz,1010233555,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003547/h90-no3AT_16_mRNA-050615-19_S13.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003547/h90-no3AT_16_mRNA-050615-19_S13.fastq.gz,<NA>,dcbfb9373b46c3156dba72d53b76c9e6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063417,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118838,wt.noAT.noCHX.mrna.11,NextSeq 550,ERR2003548,19274273,963713650,SAMEA104118838,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.noCHX.mrna.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/008/ERR2003548/ERR2003548.fastq.gz,532713519,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003548/ERR2003548.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/008/ERR2003548/ERR2003548.fastq.gz,e40e326a746971ea5e3126e3192ca877,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.noCHX.mrna.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.noCHX.mrna.11,<NA>,E-MTAB-5810:wt.noAT.noCHX.mrna.11,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782731,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/008/ERR2003548,390252964,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003548,ftp.sra.ebi.ac.uk/vol1/err/ERR200/008/ERR2003548,3546b7720323b82f3bcdc0462f7977c5,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003548/mRNAmCmAe23_SLX-12423_NXHT046_TCAGATTC.fq.gz,476585944,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003548/mRNAmCmAe23_SLX-12423_NXHT046_TCAGATTC.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003548/mRNAmCmAe23_SLX-12423_NXHT046_TCAGATTC.fq.gz,<NA>,770137c407471e576d8d48a20eec17a9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063418,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,RNA-Seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA104118839,wt.noAT.noCHX.mrna.13,NextSeq 550,ERR2003549,23972947,1198647350,SAMEA104118839,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.noCHX.mrna.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/009/ERR2003549/ERR2003549.fastq.gz,862599495,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003549/ERR2003549.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/009/ERR2003549/ERR2003549.fastq.gz,f69e5f34a2d3cf8df1ed883b5c9966a6,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.noCHX.mrna.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.noCHX.mrna.13,<NA>,E-MTAB-5810:wt.noAT.noCHX.mrna.13,<NA>,Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).,<NA>,<NA>,<NA>,<NA>,ERS1782732,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/009/ERR2003549,537673923,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003549,ftp.sra.ebi.ac.uk/vol1/err/ERR200/009/ERR2003549,bc636800872c6ec3d306bcfdcc831766,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003549/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,812213937,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003549/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003549/mrna_mAT_pN_mCHX_exp26_SLX-13147_RPI_TATGTGGC.fq.gz,<NA>,9fe61461eeb189b43ea05180b3d86f6a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063419,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118840,wt.noAT.noCHX.ribo.11,NextSeq 550,ERR2003550,26638047,1331902350,SAMEA104118840,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.noCHX.ribo.11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/000/ERR2003550/ERR2003550.fastq.gz,719510214,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003550/ERR2003550.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/000/ERR2003550/ERR2003550.fastq.gz,5287ef3126158842fcce22607376e4ab,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.noCHX.ribo.11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.noCHX.ribo.11,<NA>,E-MTAB-5810:wt.noAT.noCHX.ribo.11,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782733,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/000/ERR2003550,528958135,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003550,ftp.sra.ebi.ac.uk/vol1/err/ERR200/000/ERR2003550,c9b8a3f906a5326616ae8bf09712c3c3,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003550/RPFmCmATe23_SLX-12983.RPI26.HGLNNBBXX.s_8.r_1.fq.gz,637943365,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003550/RPFmCmATe23_SLX-12983.RPI26.HGLNNBBXX.s_8.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003550/RPFmCmATe23_SLX-12983.RPI26.HGLNNBBXX.s_8.r_1.fq.gz,<NA>,98f9160d85f357335c9dc52b9841f8cc,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063420,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118841,wt.noAT.noCHX.ribo.13,NextSeq 550,ERR2003551,32968604,1648430200,SAMEA104118841,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.noCHX.ribo.13_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/001/ERR2003551/ERR2003551.fastq.gz,708592113,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003551/ERR2003551.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/001/ERR2003551/ERR2003551.fastq.gz,8fbff505aabe627b3d946913530748fe,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.noCHX.ribo.13_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.noCHX.ribo.13,<NA>,E-MTAB-5810:wt.noAT.noCHX.ribo.13,<NA>,\"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris pH 7, 50 mM DTT, 100 mM MgCl2) for 30 min at 37C.  ATP and buffer A (Thermo\",<NA>,<NA>,<NA>,<NA>,ERS1782734,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/001/ERR2003551,549410930,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003551,ftp.sra.ebi.ac.uk/vol1/err/ERR200/001/ERR2003551,0ef540e339cf96d5cb12df142c71fd06,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003551/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,614854275,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003551/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003551/mono_mAT_pN_mCHX_exp26_SLX-13145.RPI21.HJM3GBBXX.s_4.r_1.fq.gz,<NA>,16a064d8c45d9eb04890f741fc2f6a5e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063421,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118842,wt.noAT.ribo.2,NextSeq 550,ERR2003552,3359956,171357719,SAMEA104118842,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.ribo.2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/002/ERR2003552/ERR2003552.fastq.gz,136192939,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003552/ERR2003552.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/002/ERR2003552/ERR2003552.fastq.gz,6e3f10c17d0a5e171a66f17beee5c6af,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.ribo.2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.ribo.2,<NA>,E-MTAB-5810:wt.noAT.ribo.2,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. RNA samples were purified using Purelink RNA microcolumns (Life Technologies) as described by the manufacturer, e\",<NA>,<NA>,<NA>,<NA>,ERS1782735,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/002/ERR2003552,87007481,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003552,ftp.sra.ebi.ac.uk/vol1/err/ERR200/002/ERR2003552,5b1fcdf4dfb101f97fe5fa710bf5266c,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003552/CD-RiboSeq-5.fastq.ACG.fq.gz,126534954,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003552/CD-RiboSeq-5.fastq.ACG.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003552/CD-RiboSeq-5.fastq.ACG.fq.gz,<NA>,28b6ed3e7aacd7f6f74cd6740ede2d87,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063422,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118843,wt.noAT.ribo.3,NextSeq 550,ERR2003553,30905560,1545278000,SAMEA104118843,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.ribo.3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/003/ERR2003553/ERR2003553.fastq.gz,919281065,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003553/ERR2003553.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003553/ERR2003553.fastq.gz,b035d4b3fccf176993f1c6c2d64af63f,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.ribo.3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.ribo.3,<NA>,E-MTAB-5810:wt.noAT.ribo.3,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782736,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/003/ERR2003553,682389112,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003553,ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003553,365d62ae914902987a9a50c61d7fc5da,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003553/h90_no3AT_exp07_24530670-1_merged.fastq.gz,839893104,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003553/h90_no3AT_exp07_24530670-1_merged.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003553/h90_no3AT_exp07_24530670-1_merged.fastq.gz,<NA>,243c79d740a9f42e6cf01aac1382d678,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB21224,ERX2063423,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,4896,Schizosaccharomyces pombe,OTHER,TRANSCRIPTOMIC,unspecified,SAMEA104118844,wt.noAT.ribo.4,NextSeq 550,ERR2003554,47605239,2380261950,SAMEA104118844,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Biochemistry University of Cambridge UK,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5810:wt.noAT.ribo.4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/004/ERR2003554/ERR2003554.fastq.gz,1561204140,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003554/ERR2003554.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003554/ERR2003554.fastq.gz,76cedea84235f1ea0d5aeb8f8cc7334e,2017-06-09,2018-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,wt.noAT.ribo.4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5810:wt.noAT.ribo.4,<NA>,E-MTAB-5810:wt.noAT.ribo.4,<NA>,\"Protocols: Cells were incubated with CHX at 100 ug/ul for 5 minutes before collection Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). Between 3x10E8 and 12x10E8 cells were resuspended in 100 ul of lysis buffer (20 mM Tris-HCl pH 8.0, 140 mM KCl, 5 mM Mg2Cl, 1 % Triton X-100, 100 ug/ml cycloheximide) with 1 g of chilled glass beads (Biospec) and lysed using a Fastprep 24 bead-beater (MP Biomedicals) at level 6 for 13 seconds. The extract was diluted with 400 ul of lysis buffer and cleared by centrifugation in two steps at 4 degrees C at 16,000 g (5 minutes followed by 15 minutes). 600 A260 units of cell extract were digested with 750 units of RNase I (Life Technologies) for 45 minutes. Reactions were quenched with 600 units of SUPERaseIn (Life Technologies). Digested extracts in 500 ul were loaded onto a 14 ml linear 10-50% (w/v) sucrose gradient prepared with a Gradient Master (Biocomp), and separated by centrifugation for 160 min at 35,000 rpm in a SW 40Ti rotor (Beckman). The gradients were then fractionated by upward displacement with 55% (w/v) sucrose, and fractions containing monosomes selected for further processing. RNAs were then purified by phenol extraction, passed through amicon ultra 100 kDa columns (Millipore), and run on 15% TBE-urea gels (Life Technologies). Fragments of around 28 nucleotides were extracted from the gel. Gel purified RNA fragments were treated with 10 units of T4 PNK (Thermo Fisher) in a low pH buffer (700 mM Tris p\",<NA>,<NA>,<NA>,<NA>,ERS1782737,ERP023462,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR200/004/ERR2003554,1172398652,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003554,ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003554,2df3955cc43fc1c7ce49095bf5f44fda,<NA>,E-MTAB-5810,Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation,<NA>,<NA>,ERA955947,fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003554/wt_no3AT_exp16_ribo_11848X1_150923_D00294_0200_BC7V3HANXX_3.txt.gz,1421560841,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003554/wt_no3AT_exp16_ribo_11848X1_150923_D00294_0200_BC7V3HANXX_3.txt.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003554/wt_no3AT_exp16_ribo_11848X1_150923_D00294_0200_BC7V3HANXX_3.txt.gz,<NA>,d081fb12f6f36fc00466234d3d3bf462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB22128,ERX2151380,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RIP-Seq,TRANSCRIPTOMIC,other,SAMEA104209704,Riboseq CHX pool,Illumina HiSeq 2000,ERR2093966,5129748,512974800,SAMEA104209704,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,T-helper 1 cell,\"INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5961:Riboseq CHX pool_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/006/ERR2093966/ERR2093966.fastq.gz,214688909,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2093966/ERR2093966.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/006/ERR2093966/ERR2093966.fastq.gz,71582570bd22aa93035d1d4e7197c61a,2017-08-10,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Riboseq CHX pool_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5961:Riboseq CHX pool,<NA>,E-MTAB-5961:Riboseq CHX pool,<NA>,\"Protocols: Naive CD4+ T cells purified from the blood of healthy donors were polarized in vitro to TH1 in RPMI media with 10% FBS, 0.1% Penicillin/Streptomycin 0.1 % nonessential amino acids and  0,1% Sodium Pyruvate  at 37°C and 5% CO2. For Riboseq samples, RNA footprints were extracted according to Ingolia et al., 2012  DOI : 10.1038/nprot.2012.086.  Libraries for Riboseq were prepared according to Ingolia et al., 2012 DOI :10.1038/nprot.2012.086.\",<NA>,<NA>,<NA>,<NA>,ERS1868722,ERP024464,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR209/006/ERR2093966,229799063,ftp.sra.ebi.ac.uk/vol1/err/ERR209/006/ERR2093966,ftp.sra.ebi.ac.uk/vol1/err/ERR209/006/ERR2093966,154085cb25014a690039b3c47d40aeff,<NA>,E-MTAB-5961,Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,<NA>,<NA>,ERA986360,fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2093966/Sample_A_R1.fastq.gz,200358957,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093966/Sample_A_R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093966/Sample_A_R1.fastq.gz,<NA>,f20b4b4169217cf66ca94775fe2f1dd7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB22128,ERX2151381,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209705,RNA-seq CHX 1,Illumina HiSeq 2000,ERR2093967,81139076,8113907600,SAMEA104209705,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,T-helper 1 cell,\"INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5961:RNA-seq CHX 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/007/ERR2093967/ERR2093967.fastq.gz,4201953300,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2093967/ERR2093967.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/007/ERR2093967/ERR2093967.fastq.gz,69e70a483e6e41626d6d37183986e5b1,2017-08-10,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RNA-seq CHX 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5961:RNA-seq CHX 1,<NA>,E-MTAB-5961:RNA-seq CHX 1,<NA>,\"Protocols: Naive CD4+ T cells purified from the blood of healthy donors were polarized in vitro to TH1 in RPMI media with 10% FBS, 0.1% Penicillin/Streptomycin 0.1 % nonessential amino acids and  0,1% Sodium Pyruvate  at 37°C and 5% CO2. For RNAseq samples, RNA was extracted using the mirVana isolation kit according to manufacturer&apos;s instructions (mirVana ThermoFisher #AM 1560) Libraries for RNAseq were prepared using Illumina TruSeq Stranded Total RNA Library Prep Kit\",<NA>,<NA>,<NA>,<NA>,ERS1868723,ERP024464,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR209/007/ERR2093967,3847920527,ftp.sra.ebi.ac.uk/vol1/err/ERR209/007/ERR2093967,ftp.sra.ebi.ac.uk/vol1/err/ERR209/007/ERR2093967,6453a85e4bdeb5949f741a7a8b4e48b4,<NA>,E-MTAB-5961,Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,<NA>,<NA>,ERA986360,fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2093967/Sample_L_R1.fastq.gz,3947447338,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093967/Sample_L_R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093967/Sample_L_R1.fastq.gz,<NA>,8d7a9c63ed04ece9e3fed868d5dec207,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB22128,ERX2151382,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209706,RNA-seq CHX 2,Illumina HiSeq 2000,ERR2093968,80937413,8093741300,SAMEA104209706,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,T-helper 1 cell,\"INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5961:RNA-seq CHX 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/008/ERR2093968/ERR2093968.fastq.gz,4226944443,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2093968/ERR2093968.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/008/ERR2093968/ERR2093968.fastq.gz,63a1e7bfb1c07cf75025fd00118c454c,2017-08-10,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RNA-seq CHX 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5961:RNA-seq CHX 2,<NA>,E-MTAB-5961:RNA-seq CHX 2,<NA>,\"Protocols: Naive CD4+ T cells purified from the blood of healthy donors were polarized in vitro to TH1 in RPMI media with 10% FBS, 0.1% Penicillin/Streptomycin 0.1 % nonessential amino acids and  0,1% Sodium Pyruvate  at 37°C and 5% CO2. For RNAseq samples, RNA was extracted using the mirVana isolation kit according to manufacturer&apos;s instructions (mirVana ThermoFisher #AM 1560) Libraries for RNAseq were prepared using Illumina TruSeq Stranded Total RNA Library Prep Kit\",<NA>,<NA>,<NA>,<NA>,ERS1868724,ERP024464,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR209/008/ERR2093968,3824195041,ftp.sra.ebi.ac.uk/vol1/err/ERR209/008/ERR2093968,ftp.sra.ebi.ac.uk/vol1/err/ERR209/008/ERR2093968,b45edbf8d050efb3ba93ff55dcafb810,<NA>,E-MTAB-5961,Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,<NA>,<NA>,ERA986360,fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2093968/Sample_M_R1.fastq.gz,3974164189,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093968/Sample_M_R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093968/Sample_M_R1.fastq.gz,<NA>,3af0b8702704f13c6cd09c165e3a43e5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB22128,ERX2151383,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,Illumina HiSeq 2000 sequencing; Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA104209707,RNA-seq CHX 3,Illumina HiSeq 2000,ERR2093969,75600500,7560050000,SAMEA104209707,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,T-helper 1 cell,\"INGM, National Institute of Molecular Genetics, “Romeo ed Enrica Invernizzi”, Milan, Italy\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-5961:RNA-seq CHX 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR209/009/ERR2093969/ERR2093969.fastq.gz,4116057628,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2093969/ERR2093969.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR209/009/ERR2093969/ERR2093969.fastq.gz,f2cfc9500a6823c3095293971f64614e,2017-08-10,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RNA-seq CHX 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-5961:RNA-seq CHX 3,<NA>,E-MTAB-5961:RNA-seq CHX 3,<NA>,\"Protocols: Naive CD4+ T cells purified from the blood of healthy donors were polarized in vitro to TH1 in RPMI media with 10% FBS, 0.1% Penicillin/Streptomycin 0.1 % nonessential amino acids and  0,1% Sodium Pyruvate  at 37°C and 5% CO2. For RNAseq samples, RNA was extracted using the mirVana isolation kit according to manufacturer&apos;s instructions (mirVana ThermoFisher #AM 1560) Libraries for RNAseq were prepared using Illumina TruSeq Stranded Total RNA Library Prep Kit\",<NA>,<NA>,<NA>,<NA>,ERS1868725,ERP024464,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR209/009/ERR2093969,3582427727,ftp.sra.ebi.ac.uk/vol1/err/ERR209/009/ERR2093969,ftp.sra.ebi.ac.uk/vol1/err/ERR209/009/ERR2093969,b87351c635843228450bfc634654d65e,<NA>,E-MTAB-5961,Ribosome profiling and RNA-seq of in vitro differentiated human CD4+ Th1 cells.,<NA>,<NA>,ERA986360,fasp.sra.ebi.ac.uk:/vol1/run/ERR209/ERR2093969/Sample_N_R1.fastq.gz,3876651292,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093969/Sample_N_R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR209/ERR2093969/Sample_N_R1.fastq.gz,<NA>,375115f1d361debf98b508ba622cf1f1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249169,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375964,ID18RPF,Illumina HiSeq 2500,ERR2193146,29058055,2934863555,SAMEA104375964,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID18RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/006/ERR2193146/ERR2193146.fastq.gz,1573561416,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/006/ERR2193146/ERR2193146.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/006/ERR2193146/ERR2193146.fastq.gz,b93e33eaf78fd3fb52bf5d5bbee7a673,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID18RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID18RPF,<NA>,E-MTAB-6196:ID18RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000942,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/006/ERR2193146,1803068210,ftp.sra.ebi.ac.uk/vol1/err/ERR219/006/ERR2193146,ftp.sra.ebi.ac.uk/vol1/err/ERR219/006/ERR2193146,9fdaf581f04c65383a64bac84bea3b67,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193146/ID18RPF.fastq.gz,1488986518,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193146/ID18RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193146/ID18RPF.fastq.gz,<NA>,8e404bc8f441966394e1f0baa18d7bf4,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249170,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375965,ID18WT,Illumina HiSeq 2500,ERR2193147,45096290,4554725290,SAMEA104375965,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID18WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/007/ERR2193147/ERR2193147.fastq.gz,3410807017,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/007/ERR2193147/ERR2193147.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/007/ERR2193147/ERR2193147.fastq.gz,8d20cf1107d1cff3168f63039a44223c,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID18WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID18WT,<NA>,E-MTAB-6196:ID18WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000943,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/007/ERR2193147,2640553524,ftp.sra.ebi.ac.uk/vol1/err/ERR219/007/ERR2193147,ftp.sra.ebi.ac.uk/vol1/err/ERR219/007/ERR2193147,d8c0b1f15e2c2493b61ed64c4833002f,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193147/ID18WT.fastq.gz,3263121909,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193147/ID18WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193147/ID18WT.fastq.gz,<NA>,8530f0e8418cc9b7b1d692193b8d308b,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249171,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375966,ID22RPF,Illumina HiSeq 2500,ERR2193148,43451260,4388577260,SAMEA104375966,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID22RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/008/ERR2193148/ERR2193148.fastq.gz,2329793550,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/008/ERR2193148/ERR2193148.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/008/ERR2193148/ERR2193148.fastq.gz,2f30064fc1110498fada7e78e06c034b,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID22RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID22RPF,<NA>,E-MTAB-6196:ID22RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000944,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/008/ERR2193148,2600015573,ftp.sra.ebi.ac.uk/vol1/err/ERR219/008/ERR2193148,ftp.sra.ebi.ac.uk/vol1/err/ERR219/008/ERR2193148,e335d7936291862112c808fd8e050d06,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193148/ID22RPF.fastq.gz,2200828788,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193148/ID22RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193148/ID22RPF.fastq.gz,<NA>,8ad02a697da0c38556bc54385776e7ab,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249172,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375967,ID22WT,Illumina HiSeq 2500,ERR2193149,46404718,4686876518,SAMEA104375967,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID22WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/009/ERR2193149/ERR2193149.fastq.gz,3527929924,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/009/ERR2193149/ERR2193149.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/009/ERR2193149/ERR2193149.fastq.gz,c6acac12bf732e2d9ebdf840ad0cf0ea,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID22WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID22WT,<NA>,E-MTAB-6196:ID22WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000945,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/009/ERR2193149,2721704196,ftp.sra.ebi.ac.uk/vol1/err/ERR219/009/ERR2193149,ftp.sra.ebi.ac.uk/vol1/err/ERR219/009/ERR2193149,375c276d971f778730c8d16fca1ec72f,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193149/ID22WT.fastq.gz,3376570447,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193149/ID22WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193149/ID22WT.fastq.gz,<NA>,72fc072ba90c099fad43b3607bc010c1,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249173,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375968,ID25RPF,Illumina HiSeq 2500,ERR2193150,52071822,5259254022,SAMEA104375968,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID25RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/000/ERR2193150/ERR2193150.fastq.gz,2600448486,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/000/ERR2193150/ERR2193150.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/000/ERR2193150/ERR2193150.fastq.gz,42100fc47a60aa28e75c181e58cadc43,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID25RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID25RPF,<NA>,E-MTAB-6196:ID25RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000946,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/000/ERR2193150,3078601047,ftp.sra.ebi.ac.uk/vol1/err/ERR219/000/ERR2193150,ftp.sra.ebi.ac.uk/vol1/err/ERR219/000/ERR2193150,4f3a1e170f87a613b3f123d64e7f50a8,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193150/ID25RPF.fastq.gz,2447853100,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193150/ID25RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193150/ID25RPF.fastq.gz,<NA>,4fc3a227b0b1c11b67df4c48ea364c58,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249174,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375969,ID25WT,Illumina HiSeq 2500,ERR2193151,33735834,3407319234,SAMEA104375969,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID25WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/001/ERR2193151/ERR2193151.fastq.gz,2572225460,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/001/ERR2193151/ERR2193151.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/001/ERR2193151/ERR2193151.fastq.gz,f14f936f9d2a89482e1ecf2af585db51,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID25WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID25WT,<NA>,E-MTAB-6196:ID25WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000947,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/001/ERR2193151,1977627436,ftp.sra.ebi.ac.uk/vol1/err/ERR219/001/ERR2193151,ftp.sra.ebi.ac.uk/vol1/err/ERR219/001/ERR2193151,15fba7dff57518c07b7f375ef72d04c0,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193151/ID25WT.fastq.gz,2462336890,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193151/ID25WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193151/ID25WT.fastq.gz,<NA>,af5da609cf911cd49cfa7b297c5f31b2,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249175,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375970,ID28RPF,Illumina HiSeq 2500,ERR2193152,47060340,4753094340,SAMEA104375970,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID28RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/002/ERR2193152/ERR2193152.fastq.gz,2527284516,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/002/ERR2193152/ERR2193152.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/002/ERR2193152/ERR2193152.fastq.gz,81606e9543683e996c5fae8cbc6bacd3,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID28RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID28RPF,<NA>,E-MTAB-6196:ID28RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000948,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/002/ERR2193152,2895713619,ftp.sra.ebi.ac.uk/vol1/err/ERR219/002/ERR2193152,ftp.sra.ebi.ac.uk/vol1/err/ERR219/002/ERR2193152,9dfec7fbd0a210703d0678ccd62ef87d,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193152/ID28RPF.fastq.gz,2388811054,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193152/ID28RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193152/ID28RPF.fastq.gz,<NA>,25dc4d1bdc9849cee2c52fc766e28085,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249176,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375971,ID28WT,Illumina HiSeq 2500,ERR2193153,34725379,3507263279,SAMEA104375971,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID28WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/003/ERR2193153/ERR2193153.fastq.gz,2616433457,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/003/ERR2193153/ERR2193153.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/003/ERR2193153/ERR2193153.fastq.gz,d820271d27ecf099ec3c7ce2d1c9caa4,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID28WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID28WT,<NA>,E-MTAB-6196:ID28WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000949,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/003/ERR2193153,2026367968,ftp.sra.ebi.ac.uk/vol1/err/ERR219/003/ERR2193153,ftp.sra.ebi.ac.uk/vol1/err/ERR219/003/ERR2193153,34253a78dd7bfe8371d13e7eac32ad77,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193153/ID28WT.fastq.gz,2503494073,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193153/ID28WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193153/ID28WT.fastq.gz,<NA>,02df98486e57c33b3f43430d7d51e089,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249177,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375972,ID29RPF,Illumina HiSeq 2500,ERR2193154,36753828,3712136628,SAMEA104375972,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID29RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/004/ERR2193154/ERR2193154.fastq.gz,1776551378,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/004/ERR2193154/ERR2193154.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/004/ERR2193154/ERR2193154.fastq.gz,9001e61596a39a0fa4a26d72586d0aaf,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID29RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID29RPF,<NA>,E-MTAB-6196:ID29RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000950,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/004/ERR2193154,2128088521,ftp.sra.ebi.ac.uk/vol1/err/ERR219/004/ERR2193154,ftp.sra.ebi.ac.uk/vol1/err/ERR219/004/ERR2193154,192e3cee139e1481625b3c3d2eb2b794,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193154/ID29RPF.fastq.gz,1671170019,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193154/ID29RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193154/ID29RPF.fastq.gz,<NA>,4de4ae51f5391c8c755efdc673db1328,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249178,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375973,ID29WT,Illumina HiSeq 2500,ERR2193155,37389224,3776311624,SAMEA104375973,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID29WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/005/ERR2193155/ERR2193155.fastq.gz,2817496407,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/005/ERR2193155/ERR2193155.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/005/ERR2193155/ERR2193155.fastq.gz,fe6b2f014b201569b7956732b278bde7,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID29WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID29WT,<NA>,E-MTAB-6196:ID29WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000951,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/005/ERR2193155,2181262948,ftp.sra.ebi.ac.uk/vol1/err/ERR219/005/ERR2193155,ftp.sra.ebi.ac.uk/vol1/err/ERR219/005/ERR2193155,1f8add82d6c39cf91ef9d621fd57b1ab,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193155/ID29WT.fastq.gz,2695716796,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193155/ID29WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193155/ID29WT.fastq.gz,<NA>,3685ab83da03380a7f8ed8900ab19b56,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249179,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375974,ID30RPF,Illumina HiSeq 2500,ERR2193156,58732724,5932005124,SAMEA104375974,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID30RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/006/ERR2193156/ERR2193156.fastq.gz,3099589720,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/006/ERR2193156/ERR2193156.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/006/ERR2193156/ERR2193156.fastq.gz,6dfb36e0da335ab347c7f6468c104c78,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID30RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID30RPF,<NA>,E-MTAB-6196:ID30RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000952,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/006/ERR2193156,3559384666,ftp.sra.ebi.ac.uk/vol1/err/ERR219/006/ERR2193156,ftp.sra.ebi.ac.uk/vol1/err/ERR219/006/ERR2193156,525f81894f2d78167a63992a19e8d0b7,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193156/ID30RPF.fastq.gz,2925285861,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193156/ID30RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193156/ID30RPF.fastq.gz,<NA>,5f27217987a6bca8d43d498fc43fb322,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249180,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375975,ID30WT,Illumina HiSeq 2500,ERR2193157,27507989,2778306889,SAMEA104375975,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID30WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/007/ERR2193157/ERR2193157.fastq.gz,2082475331,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/007/ERR2193157/ERR2193157.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/007/ERR2193157/ERR2193157.fastq.gz,2701a003d9d30c1593a3de50a369d074,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID30WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID30WT,<NA>,E-MTAB-6196:ID30WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000953,ERP105150,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/007/ERR2193157,1608619337,ftp.sra.ebi.ac.uk/vol1/err/ERR219/007/ERR2193157,ftp.sra.ebi.ac.uk/vol1/err/ERR219/007/ERR2193157,ff38a3c520b181a0872c86fe67fb5436,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193157/ID30WT.fastq.gz,1994160495,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193157/ID30WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193157/ID30WT.fastq.gz,<NA>,d70b88ec1cb7f739840721d76c2d273a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249181,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA104375976,ID31RPF,Illumina HiSeq 2500,ERR2193158,38200240,3858224240,SAMEA104375976,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID31RPF_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/008/ERR2193158/ERR2193158.fastq.gz,1997019291,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/008/ERR2193158/ERR2193158.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/008/ERR2193158/ERR2193158.fastq.gz,6559878dabef5b7e3025ab970761560d,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID31RPF_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID31RPF,<NA>,E-MTAB-6196:ID31RPF,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. RNase I (0.5 U/µl) was added to lysates for 30 minutes at room temperature with gentle rotation.   Lysates were then layered on sucrose gradients and centrifuged at 38000 rpm, 4deg C for 2 hours in a Sorvall centrifuge with settings acceleration 9 and deceleration 6 with a SW-41 Ti rotor.   Samples were fractionated using FoxyR1 Fractionation System and RPF UV traces were compared (plus/minus RNAse I) to determine those fractions (typically 9 to 11) that contained riboso...\",<NA>,<NA>,<NA>,<NA>,ERS2000954,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/008/ERR2193158,2273662566,ftp.sra.ebi.ac.uk/vol1/err/ERR219/008/ERR2193158,ftp.sra.ebi.ac.uk/vol1/err/ERR219/008/ERR2193158,fec58f46177791ab56b2ba3f190bdcad,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193158/ID31RPF.fastq.gz,1884322505,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193158/ID31RPF.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193158/ID31RPF.fastq.gz,<NA>,b6e3b9583153f29eb5fb2486b523d3a9,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23398,ERX2249182,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,Illumina HiSeq 2500 sequencing; Ribosome profiling of CLL patient samples,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMEA104375977,ID31WT,Illumina HiSeq 2500,ERR2193159,31139926,3145132526,SAMEA104375977,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,lymphocyte of B lineage,MRC Toxicology Unit,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6196:ID31WT_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR219/009/ERR2193159/ERR2193159.fastq.gz,2354464727,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/009/ERR2193159/ERR2193159.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR219/009/ERR2193159/ERR2193159.fastq.gz,66a78bb17955bfa674db58d4c156057c,2017-11-09,2018-08-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,ID31WT_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6196:ID31WT,<NA>,E-MTAB-6196:ID31WT,<NA>,\"Protocols: Cycloheximide (100 µg/ml) was added to the wells for 5 min at 37deg to stop translation and, working at 4deg C, CLL cells were removed from the plates by pipetting and transferred to 15 ml Falcon tubes on ice prior to centrifugation at 300g, 4deg C for 3 minutes.   The pellet was resuspended in 5 ml of ice cold PBS with cycloheximide (100 µg/ml) and centrifuged again at 300g, 4deg C for 3 minutes.   Following the addition of 0.5 ml lysis buffer (3M NaCl, 150mM MgCl2, 150mM Tris-HCl (pH7.5), 20mM DTT, cycloheximide (1mg/ml), 1% Triton X-100 and RNasin (12.4µl/ml), lysates were centrifuged at 3000 rpm, 4deg C for 5 minutes before being snap frozen in liquid nitrogen and stored at -80deg C. Fibroblasts expressing CD40L were irradiated (35 Gy for 15 minutes) and placed on a 6-well plate so as to produce an ~80% confluent culture.   1 day following irradiation CLL cells at 3x106 cell/ml were added to this feeder layer with IL-4 (10 ng/ml).   CLL cells were cultured for 72 hours before harvesting. Trizol LS (1.4 ml) was added to the fractions, mixed, and allowed to stand for 5 minutes at room temperature to dissociate the nucleoprotein complexes.   Bromochloropropane (BCP) (200 µl) was added and samples were shaken for 15 seconds to mix and allowed to settle for 5 to 10 minutes prior to centrifugation in a refrigerated centrifuge for 15 minutes at 4deg C.   The aqueous layer was carefully removed and isopropanol (1 ml) and GlycoBlue (1 µl) were added.   Following...\",<NA>,<NA>,<NA>,<NA>,ERS2000955,ERP105150,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR219/009/ERR2193159,1818113941,ftp.sra.ebi.ac.uk/vol1/err/ERR219/009/ERR2193159,ftp.sra.ebi.ac.uk/vol1/err/ERR219/009/ERR2193159,a71b556b0ba4c4426b7deadf538ddff9,<NA>,E-MTAB-6196,Ribosome profiling of CLL patient samples,<NA>,<NA>,ERA1131598,fasp.sra.ebi.ac.uk:/vol1/run/ERR219/ERR2193159/ID31WT.fastq.gz,2253851597,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193159/ID31WT.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR219/ERR2193159/ID31WT.fastq.gz,<NA>,1c8345672021b7ae07a4ecfe2eef09fe,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256431,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104395996,Mock-RiboSeq-CHX-1,Illumina HiSeq 2000,ERR2201443,43087035,1347230056,SAMEA104395996,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:Mock-RiboSeq-CHX-1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/003/ERR2201443/ERR2201443.fastq.gz,1487540430,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2201443/ERR2201443.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/003/ERR2201443/ERR2201443.fastq.gz,f89b5d8e1d49929a35f30da4cc9c1ef9,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Mock-RiboSeq-CHX-1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:Mock-RiboSeq-CHX-1,<NA>,E-MTAB-6231:Mock-RiboSeq-CHX-1,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013938,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/003/ERR2201443,2093153699,ftp.sra.ebi.ac.uk/vol1/err/ERR220/003/ERR2201443,ftp.sra.ebi.ac.uk/vol1/err/ERR220/003/ERR2201443,7b66c7a6e8b1dbd717096d32a499a29e,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201443/Mock-RiboSeq-CHX-1.fq.gz,1342208811,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201443/Mock-RiboSeq-CHX-1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201443/Mock-RiboSeq-CHX-1.fq.gz,<NA>,6768ca10681a69c85d040feca1dfab29,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256432,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104395999,Mock-RNASeq-1,Illumina HiSeq 2000,ERR2201444,34760070,1082072656,SAMEA104395999,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:Mock-RNASeq-1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/004/ERR2201444/ERR2201444.fastq.gz,1183296606,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2201444/ERR2201444.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/004/ERR2201444/ERR2201444.fastq.gz,0f255eeedf21bad5723c3499474ca8b6,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Mock-RNASeq-1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:Mock-RNASeq-1,<NA>,E-MTAB-6231:Mock-RNASeq-1,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013941,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/004/ERR2201444,1665438452,ftp.sra.ebi.ac.uk/vol1/err/ERR220/004/ERR2201444,ftp.sra.ebi.ac.uk/vol1/err/ERR220/004/ERR2201444,8a10fec42620fe779a92febcb81215e1,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201444/Mock-RNASeq-1.fq.gz,1067468058,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201444/Mock-RNASeq-1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201444/Mock-RNASeq-1.fq.gz,<NA>,005a7b53065d351da301a07dfc8b6056,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256433,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396001,Mock-RiboSeq-CHX-2,NextSeq 500,ERR2201445,7925554,229108181,SAMEA104396001,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:Mock-RiboSeq-CHX-2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/005/ERR2201445/ERR2201445.fastq.gz,158330738,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/005/ERR2201445/ERR2201445.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/005/ERR2201445/ERR2201445.fastq.gz,a8c85d2b0273b3b672a31f144cc38c74,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Mock-RiboSeq-CHX-2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:Mock-RiboSeq-CHX-2,<NA>,E-MTAB-6231:Mock-RiboSeq-CHX-2,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013943,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/005/ERR2201445,120612133,ftp.sra.ebi.ac.uk/vol1/err/ERR220/005/ERR2201445,ftp.sra.ebi.ac.uk/vol1/err/ERR220/005/ERR2201445,97acbbb7b55fc8e382d874f51c4fcfa7,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201445/Mock-RiboSeq-CHX-2.fq.gz,138990959,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201445/Mock-RiboSeq-CHX-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201445/Mock-RiboSeq-CHX-2.fq.gz,<NA>,cc117ae5a4c1e535b96341b8be71ef78,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256434,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396002,Mock-RNASeq-2,NextSeq 500,ERR2201446,17904218,536508323,SAMEA104396002,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:Mock-RNASeq-2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/006/ERR2201446/ERR2201446.fastq.gz,366079923,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/006/ERR2201446/ERR2201446.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/006/ERR2201446/ERR2201446.fastq.gz,069be68332a9ba6d5eb6773e1d61fcac,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Mock-RNASeq-2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:Mock-RNASeq-2,<NA>,E-MTAB-6231:Mock-RNASeq-2,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013944,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/006/ERR2201446,270906636,ftp.sra.ebi.ac.uk/vol1/err/ERR220/006/ERR2201446,ftp.sra.ebi.ac.uk/vol1/err/ERR220/006/ERR2201446,5d2d45f5e1d7fa7540f74abfa8f5bd38,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201446/Mock-RNASeq-2.fq.gz,320961522,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201446/Mock-RNASeq-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201446/Mock-RNASeq-2.fq.gz,<NA>,a494e5cc7597375dd88815bdd76a4d61,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256435,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396003,RiboSeq-CHX-1,Illumina HiSeq 2000,ERR2201447,62327174,1889305290,SAMEA104396003,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:RiboSeq-CHX-1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/007/ERR2201447/ERR2201447.fastq.gz,1262052941,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/007/ERR2201447/ERR2201447.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/007/ERR2201447/ERR2201447.fastq.gz,e8c2b19037cc77891ea0732d415adf63,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RiboSeq-CHX-1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:RiboSeq-CHX-1,<NA>,E-MTAB-6231:RiboSeq-CHX-1,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013945,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/007/ERR2201447,2081463537,ftp.sra.ebi.ac.uk/vol1/err/ERR220/007/ERR2201447,ftp.sra.ebi.ac.uk/vol1/err/ERR220/007/ERR2201447,e9860953d8ef520055fef75be6159281,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201447/RiboSeq-CHX-1.fq.gz,1065765178,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201447/RiboSeq-CHX-1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201447/RiboSeq-CHX-1.fq.gz,<NA>,e2749972a1244b85e6e43671fe00d1a7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256436,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396004,RiboSeq-HAR,Illumina HiSeq 2000,ERR2201448,29880691,918985348,SAMEA104396004,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:RiboSeq-HAR_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/008/ERR2201448/ERR2201448.fastq.gz,628850450,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/008/ERR2201448/ERR2201448.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/008/ERR2201448/ERR2201448.fastq.gz,c3315dd32b4e48931a8dcee839c534e7,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RiboSeq-HAR_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:RiboSeq-HAR,<NA>,E-MTAB-6231:RiboSeq-HAR,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013946,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/008/ERR2201448,1017895659,ftp.sra.ebi.ac.uk/vol1/err/ERR220/008/ERR2201448,ftp.sra.ebi.ac.uk/vol1/err/ERR220/008/ERR2201448,920f8432aed0b0d23c74b512ee685d37,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201448/RiboSeq-HAR.fq.gz,537553833,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201448/RiboSeq-HAR.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201448/RiboSeq-HAR.fq.gz,<NA>,8c148d22038b4f5d63593c1e4da770c1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256437,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,Illumina HiSeq 2000 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396005,RNASeq-1,Illumina HiSeq 2000,ERR2201449,99428786,3052553985,SAMEA104396005,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:RNASeq-1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/009/ERR2201449/ERR2201449.fastq.gz,1878340635,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/009/ERR2201449/ERR2201449.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/009/ERR2201449/ERR2201449.fastq.gz,a09f25a5d3a5e19997bc15fb50ccb689,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RNASeq-1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:RNASeq-1,<NA>,E-MTAB-6231:RNASeq-1,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013947,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/009/ERR2201449,3311032252,ftp.sra.ebi.ac.uk/vol1/err/ERR220/009/ERR2201449,ftp.sra.ebi.ac.uk/vol1/err/ERR220/009/ERR2201449,64ec3edfe6585a7d269b291b1551109c,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201449/RNASeq-1.fq.gz,1550349695,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201449/RNASeq-1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201449/RNASeq-1.fq.gz,<NA>,5e36fdad8feef96fa52f48f20f1f3717,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256438,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396006,RiboSeq-CHX-2,NextSeq 500,ERR2201450,11326057,306768073,SAMEA104396006,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:RiboSeq-CHX-2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/000/ERR2201450/ERR2201450.fastq.gz,232252130,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/000/ERR2201450/ERR2201450.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/000/ERR2201450/ERR2201450.fastq.gz,d69579d55bf5f3911a33e80f27046cd3,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RiboSeq-CHX-2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:RiboSeq-CHX-2,<NA>,E-MTAB-6231:RiboSeq-CHX-2,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013948,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/000/ERR2201450,166574209,ftp.sra.ebi.ac.uk/vol1/err/ERR220/000/ERR2201450,ftp.sra.ebi.ac.uk/vol1/err/ERR220/000/ERR2201450,486d66ea1f3cbac2b59b14fc7e0db54a,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201450/RiboSeq-CHX-2.fq.gz,204138283,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201450/RiboSeq-CHX-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201450/RiboSeq-CHX-2.fq.gz,<NA>,299440c24e68309f5b4a94bdfcafe951,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB23562,ERX2256439,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,NextSeq 500 sequencing; Ribosome profiling of the retrovirus murine leukemia virus,10116,Rattus norvegicus,OTHER,TRANSCRIPTOMIC,other,SAMEA104396007,RNASeq-2,NextSeq 500,ERR2201451,17348527,519625143,SAMEA104396007,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Rat2,fibroblast,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6231:RNASeq-2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR220/001/ERR2201451/ERR2201451.fastq.gz,348615230,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2201451/ERR2201451.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR220/001/ERR2201451/ERR2201451.fastq.gz,28a78a6637fb61d85af1bb62bc0aab78,2017-11-22,2018-01-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RNASeq-2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6231:RNASeq-2,<NA>,E-MTAB-6231:RNASeq-2,<NA>,\"Protocols: In order to produce infectious virions, the full-length MuLV Moloney strain proviral clone pNCA (Colicelli J and Goff SP 1988, a kind gift of S.P. Goff, Columbia University) (GenBank accession number: NC_001501) was transfected to 293T monolayers at 40% confluence. Cells were harvested at 72 h post-transfection and tissue culture supernatant was used to infect in duplicate fresh Rat2 (Rattus norvegicus) monolayers at 10% confluence. At 96 h p.i. cells were treated with cyclohexamide [CHX] (Sigma-Aldrich; to 100 mg/ml; 2 min), or harringtonine HAR (LKT laboratories; 2 mg/ml, 3 min) then CHX (to 100 mg/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and then transferred to dry ice and 400 ml of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 mg/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies)] dripped onto the cells. Cells were scraped, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4ºC. Cell lysates were subjected to RiboSeq and RNASeq as described in (Chung 2015). The methodologies employed were based on the original protocols of Ingolia and colleagues (Ingolia 2009 and Ingolia 2012), except ribosomal RNA contamination removed by treatment with duplex-specific nuclease (DSN) and library amplicons were constructed using a small RNA cloning strategy adapted to\",<NA>,<NA>,<NA>,<NA>,ERS2013949,ERP105321,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR220/001/ERR2201451,262185848,ftp.sra.ebi.ac.uk/vol1/err/ERR220/001/ERR2201451,ftp.sra.ebi.ac.uk/vol1/err/ERR220/001/ERR2201451,62396a19c7a5ea7b8fd0f260baa1861a,<NA>,E-MTAB-6231,Ribosome profiling of the retrovirus murine leukemia virus,<NA>,<NA>,ERA1138911,fasp.sra.ebi.ac.uk:/vol1/run/ERR220/ERR2201451/RNASeq-2.fq.gz,304945440,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201451/RNASeq-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR220/ERR2201451/RNASeq-2.fq.gz,<NA>,92cb0153a063bdf4da26da81556c0f78,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547744,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590062,Sample 10,NextSeq 500,ERR2528907,14307741,1087388316,SAMEA4590062,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 10_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/007/ERR2528907/ERR2528907.fastq.gz,444017467,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/007/ERR2528907/ERR2528907.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/007/ERR2528907/ERR2528907.fastq.gz,c419e9207baa9df9af2fd476bb6e916a,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 10_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 10,<NA>,E-MTAB-6656:Sample 10,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410782,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/007/ERR2528907,449216423,ftp.sra.ebi.ac.uk/vol1/err/ERR252/007/ERR2528907,ftp.sra.ebi.ac.uk/vol1/err/ERR252/007/ERR2528907,20693e2d694875b4172cb28be3953f40,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528907/Sample10.fq.gz,407111835,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528907/Sample10.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528907/Sample10.fq.gz,<NA>,91ead2d2fc134ce5fb4e5527559f0bb5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547745,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590063,Sample 1,NextSeq 500,ERR2528908,32539697,2473016956,SAMEA4590063,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/008/ERR2528908/ERR2528908.fastq.gz,916434933,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/008/ERR2528908/ERR2528908.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/008/ERR2528908/ERR2528908.fastq.gz,03a7e33bfe6097bef42704e0fe8c4202,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 1,<NA>,E-MTAB-6656:Sample 1,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410783,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/008/ERR2528908,950264915,ftp.sra.ebi.ac.uk/vol1/err/ERR252/008/ERR2528908,ftp.sra.ebi.ac.uk/vol1/err/ERR252/008/ERR2528908,6306f5c16d60d02c94683af865936e20,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528908/Sample1.fq.gz,835523432,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528908/Sample1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528908/Sample1.fq.gz,<NA>,c731bd5d853cf1a40311c44d7d038fd6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547746,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590064,Sample 2,NextSeq 500,ERR2528909,32365237,2459757997,SAMEA4590064,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/009/ERR2528909/ERR2528909.fastq.gz,914663689,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/009/ERR2528909/ERR2528909.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/009/ERR2528909/ERR2528909.fastq.gz,dee4f9de28c1932b034f491a4ae05fd5,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 2,<NA>,E-MTAB-6656:Sample 2,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410784,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/009/ERR2528909,962946491,ftp.sra.ebi.ac.uk/vol1/err/ERR252/009/ERR2528909,ftp.sra.ebi.ac.uk/vol1/err/ERR252/009/ERR2528909,91540e3027473d51b8eaa8594e674309,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528909/Sample2.fq.gz,834943257,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528909/Sample2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528909/Sample2.fq.gz,<NA>,98d10b01225b317532e3040ebc936613,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547747,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590065,Sample 3,NextSeq 500,ERR2528910,27720458,2106754808,SAMEA4590065,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/000/ERR2528910/ERR2528910.fastq.gz,990930953,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/000/ERR2528910/ERR2528910.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/000/ERR2528910/ERR2528910.fastq.gz,4f4928a411abdf7240adf05ddbe59c7a,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 3,<NA>,E-MTAB-6656:Sample 3,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410785,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/000/ERR2528910,937401010,ftp.sra.ebi.ac.uk/vol1/err/ERR252/000/ERR2528910,ftp.sra.ebi.ac.uk/vol1/err/ERR252/000/ERR2528910,2dc2bfd9bb01e17176a867d20364ab16,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528910/Sample3.fq.gz,918475255,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528910/Sample3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528910/Sample3.fq.gz,<NA>,401c905924e664c8b7b1ae75c48af73b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547748,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590066,Sample 4,NextSeq 500,ERR2528911,27618945,2099039820,SAMEA4590066,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/001/ERR2528911/ERR2528911.fastq.gz,988561450,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/001/ERR2528911/ERR2528911.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/001/ERR2528911/ERR2528911.fastq.gz,a573090ebe54ddf657332e7b3bc734e2,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 4,<NA>,E-MTAB-6656:Sample 4,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410786,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/001/ERR2528911,928545753,ftp.sra.ebi.ac.uk/vol1/err/ERR252/001/ERR2528911,ftp.sra.ebi.ac.uk/vol1/err/ERR252/001/ERR2528911,bbddb69e41d452803e50087816f3280c,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528911/Sample4.fq.gz,915972022,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528911/Sample4.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528911/Sample4.fq.gz,<NA>,810821af12e35047dca314b41197e420,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547749,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590067,Sample 5,NextSeq 500,ERR2528912,29429175,2236617172,SAMEA4590067,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/002/ERR2528912/ERR2528912.fastq.gz,916124892,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/002/ERR2528912/ERR2528912.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/002/ERR2528912/ERR2528912.fastq.gz,7acbbe11e371b91cbeb76fe3532747cb,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 5,<NA>,E-MTAB-6656:Sample 5,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410787,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/002/ERR2528912,866487587,ftp.sra.ebi.ac.uk/vol1/err/ERR252/002/ERR2528912,ftp.sra.ebi.ac.uk/vol1/err/ERR252/002/ERR2528912,0222cdceac13a1352bdea7b70a745681,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528912/Sample5.fq.gz,843749179,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528912/Sample5.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528912/Sample5.fq.gz,<NA>,fed2a839b1d380c2ec9dca54ed64c110,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547750,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590068,Sample 6,NextSeq 500,ERR2528913,53891222,4095732642,SAMEA4590068,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/003/ERR2528913/ERR2528913.fastq.gz,1644265971,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/003/ERR2528913/ERR2528913.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/003/ERR2528913/ERR2528913.fastq.gz,0ae3fcd1746bf279554fc773b30324af,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 6,<NA>,E-MTAB-6656:Sample 6,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410788,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/003/ERR2528913,1578942597,ftp.sra.ebi.ac.uk/vol1/err/ERR252/003/ERR2528913,ftp.sra.ebi.ac.uk/vol1/err/ERR252/003/ERR2528913,6110f2bed0261fa4eefbb5a8141397e1,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528913/Sample6.fq.gz,1508771857,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528913/Sample6.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528913/Sample6.fq.gz,<NA>,8e7b647e7b2fbc5977f33e6ee6c4b58e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547751,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590069,Sample 7,NextSeq 500,ERR2528914,25078726,1905983073,SAMEA4590069,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/004/ERR2528914/ERR2528914.fastq.gz,810600718,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/004/ERR2528914/ERR2528914.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/004/ERR2528914/ERR2528914.fastq.gz,815cc5109e118340a2caadc186a9e6c3,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 7,<NA>,E-MTAB-6656:Sample 7,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410789,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/004/ERR2528914,758579618,ftp.sra.ebi.ac.uk/vol1/err/ERR252/004/ERR2528914,ftp.sra.ebi.ac.uk/vol1/err/ERR252/004/ERR2528914,682d1000a9d1e15f4994057472258300,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528914/Sample7.fq.gz,748344398,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528914/Sample7.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528914/Sample7.fq.gz,<NA>,a09d788eeaadead730d854b48abb4957,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547752,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,RNA-Seq,TRANSCRIPTOMIC,RANDOM,SAMEA4590070,Sample 8,NextSeq 500,ERR2528915,33016656,2509265722,SAMEA4590070,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/005/ERR2528915/ERR2528915.fastq.gz,1077815750,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/005/ERR2528915/ERR2528915.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/005/ERR2528915/ERR2528915.fastq.gz,66f2ad23d98025d98a84e7c880f8916c,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 8,<NA>,E-MTAB-6656:Sample 8,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410790,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/005/ERR2528915,995571542,ftp.sra.ebi.ac.uk/vol1/err/ERR252/005/ERR2528915,ftp.sra.ebi.ac.uk/vol1/err/ERR252/005/ERR2528915,47ffad2543f34bfe03d1335358487ff8,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528915/Sample8.fq.gz,995006551,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528915/Sample8.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528915/Sample8.fq.gz,<NA>,7da408272dd24b22a4ac5cf2679d4c26,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB26279,ERX2547753,\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",\"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",9796,Equus caballus,OTHER,TRANSCRIPTOMIC,other,SAMEA4590071,Sample 9,NextSeq 500,ERR2528916,13436449,1021170124,SAMEA4590071,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,E. Derm (NBL-6),fibroblast of dermis,University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6656:Sample 9_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR252/006/ERR2528916/ERR2528916.fastq.gz,427773647,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/006/ERR2528916/ERR2528916.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR252/006/ERR2528916/ERR2528916.fastq.gz,6d5e4881545abbbb326bdd84c472b04e,2018-04-17,2018-05-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Sample 9_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6656:Sample 9,<NA>,E-MTAB-6656:Sample 9,<NA>,\"Protocols: Equine dermal fibroblast (ED) cells were maintained in Dulbecco’s modification of Eagle’s medium (DMEM) supplemented with 10% (vol/vol) fetal calf serum (FCS). Equine torovirus (EToV, Berne strain) was passaged as previously described (Smits et al., 2005). ED cells were plated in 15 cm dishes and, upon reaching 80% confluence, were infected with EToV at a multiplicity of infection (MOI) of 1 PFU/cell in serum-free DMEM. After 1 hour at 37 ºC, the inoculum was removed and the cells were incubated in DMEM containing 2% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 ºC until 10 hours post-infection. Where specified, cells were treated with CHX (Sigma-Aldrich; to 100 µg/ml; 2 min), or HAR (LKT laboratories; 2 µg/ml, 3 min) then CHX (to 100 µg/ml; 2 min), prior to harvest. Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. The methodologies employed were based on the original protocols of Ingolia and ...\",<NA>,<NA>,<NA>,<NA>,ERS2410791,ERP108253,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR252/006/ERR2528916,428025826,ftp.sra.ebi.ac.uk/vol1/err/ERR252/006/ERR2528916,ftp.sra.ebi.ac.uk/vol1/err/ERR252/006/ERR2528916,b83e90220f03940b23cc5f39dfe5d96d,<NA>,E-MTAB-6656,\"Ribosome profiling and RNA sequencing of ED fibroblast cells in response to infection by equine torovirus, Berne strain.\",<NA>,<NA>,ERA1318702,fasp.sra.ebi.ac.uk:/vol1/run/ERR252/ERR2528916/Sample9.fq.gz,393226943,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528916/Sample9.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR252/ERR2528916/Sample9.fq.gz,<NA>,3c68e374d90dfb57819f3d416585c4a9,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676640,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753492,S1_eEF3_normal_rep1,Illumina HiSeq 2500,ERR2660262,143636526,7325462826,SAMEA4753492,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S1_eEF3_normal_rep1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/002/ERR2660262/ERR2660262.fastq.gz,5008576668,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2660262/ERR2660262.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/002/ERR2660262/ERR2660262.fastq.gz,7fb5e61b8b148257ec9572de907c445d,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S1_eEF3_normal_rep1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S1_eEF3_normal_rep1,<NA>,E-MTAB-6938:S1_eEF3_normal_rep1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573591,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/002/ERR2660262,3987351904,ftp.sra.ebi.ac.uk/vol1/err/ERR266/002/ERR2660262,ftp.sra.ebi.ac.uk/vol1/err/ERR266/002/ERR2660262,ba8cc141ec3ce86a071aac9d9ed3e48f,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660262/new_all_S1.fastq.gz,4583895503,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660262/new_all_S1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660262/new_all_S1.fastq.gz,<NA>,f883c4bffa8c249f1c2f8d69e5bc0b81,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676641,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753493,S3_eEF3_normal_rep2,Illumina HiSeq 2500,ERR2660263,133848724,6826284924,SAMEA4753493,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S3_eEF3_normal_rep2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/003/ERR2660263/ERR2660263.fastq.gz,4609066086,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/003/ERR2660263/ERR2660263.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/003/ERR2660263/ERR2660263.fastq.gz,c0aec93a1a105fab85a7fcd4f5b78ecc,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S3_eEF3_normal_rep2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S3_eEF3_normal_rep2,<NA>,E-MTAB-6938:S3_eEF3_normal_rep2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573592,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/003/ERR2660263,3713112909,ftp.sra.ebi.ac.uk/vol1/err/ERR266/003/ERR2660263,ftp.sra.ebi.ac.uk/vol1/err/ERR266/003/ERR2660263,eb202737ceb1bcf43bd8b257608dd07a,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660263/new_all_S3.fastq.gz,4208506878,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660263/new_all_S3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660263/new_all_S3.fastq.gz,<NA>,61a3dcfc5bf584f490ff87726f5cf2bc,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676642,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753495,S5_eEF3_normal_rep1,Illumina HiSeq 2500,ERR2660264,87339001,4454289051,SAMEA4753495,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S5_eEF3_normal_rep1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/004/ERR2660264/ERR2660264.fastq.gz,3630024840,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/004/ERR2660264/ERR2660264.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/004/ERR2660264/ERR2660264.fastq.gz,2931101c22d52aec3027c6197a4752d7,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S5_eEF3_normal_rep1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S5_eEF3_normal_rep1,<NA>,E-MTAB-6938:S5_eEF3_normal_rep1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573594,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/004/ERR2660264,2373451645,ftp.sra.ebi.ac.uk/vol1/err/ERR266/004/ERR2660264,ftp.sra.ebi.ac.uk/vol1/err/ERR266/004/ERR2660264,bd952284f04706f19a1f78b2bfa1ffa1,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660264/new_all_S5.fastq.gz,3363162869,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660264/new_all_S5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660264/new_all_S5.fastq.gz,<NA>,5d426ed4a1d665799e8361c2fb919040,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676643,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753496,S7_eEF3_normal_rep2,Illumina HiSeq 2500,ERR2660265,81861785,4174951035,SAMEA4753496,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S7_eEF3_normal_rep2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/005/ERR2660265/ERR2660265.fastq.gz,3390445107,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/005/ERR2660265/ERR2660265.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/005/ERR2660265/ERR2660265.fastq.gz,285303664b8e23920873215f949fb21e,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S7_eEF3_normal_rep2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S7_eEF3_normal_rep2,<NA>,E-MTAB-6938:S7_eEF3_normal_rep2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573595,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/005/ERR2660265,2214633655,ftp.sra.ebi.ac.uk/vol1/err/ERR266/005/ERR2660265,ftp.sra.ebi.ac.uk/vol1/err/ERR266/005/ERR2660265,031394711c8e3e44d39d380996a09407,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660265/new_all_S7.fastq.gz,3253384454,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660265/new_all_S7.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660265/new_all_S7.fastq.gz,<NA>,9fe6224e776eebaa0cb64472b1850e2c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676644,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753498,S2_eEF3_depleted_rep1,Illumina HiSeq 2500,ERR2660266,140684593,7174914243,SAMEA4753498,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S2_eEF3_depleted_rep1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/006/ERR2660266/ERR2660266.fastq.gz,5102748453,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2660266/ERR2660266.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/006/ERR2660266/ERR2660266.fastq.gz,2fa5ac4cdb38901166076a7dae3e5c0a,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S2_eEF3_depleted_rep1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S2_eEF3_depleted_rep1,<NA>,E-MTAB-6938:S2_eEF3_depleted_rep1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573597,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/006/ERR2660266,3896483815,ftp.sra.ebi.ac.uk/vol1/err/ERR266/006/ERR2660266,ftp.sra.ebi.ac.uk/vol1/err/ERR266/006/ERR2660266,df08c7cff4f9fabd701de012c82e9415,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660266/new_all_S2.fastq.gz,4682534363,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660266/new_all_S2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660266/new_all_S2.fastq.gz,<NA>,7431f15153ffc8af41b3339eed306416,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676645,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4753500,S4_eEF3_depleted_rep2,Illumina HiSeq 2500,ERR2660267,132564691,6760799241,SAMEA4753500,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S4_eEF3_depleted_rep2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/007/ERR2660267/ERR2660267.fastq.gz,4714773891,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/007/ERR2660267/ERR2660267.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/007/ERR2660267/ERR2660267.fastq.gz,97a27385c4f857084a7dfe86cc0f341d,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S4_eEF3_depleted_rep2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S4_eEF3_depleted_rep2,<NA>,E-MTAB-6938:S4_eEF3_depleted_rep2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573599,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/007/ERR2660267,3704745912,ftp.sra.ebi.ac.uk/vol1/err/ERR266/007/ERR2660267,ftp.sra.ebi.ac.uk/vol1/err/ERR266/007/ERR2660267,bc30fe7efd165e15593eeb0e5568eb67,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660267/new_all_S4.fastq.gz,4316956123,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660267/new_all_S4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660267/new_all_S4.fastq.gz,<NA>,887d5b8b8c686bee8951acce9503738c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676646,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753503,S6_eEF3_depleted_rep1,Illumina HiSeq 2500,ERR2660269,78528010,4004928510,SAMEA4753503,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S6_eEF3_depleted_rep1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/009/ERR2660269/ERR2660269.fastq.gz,3217716316,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2660269/ERR2660269.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/009/ERR2660269/ERR2660269.fastq.gz,ff4ae569584311f5d5bb63aa8d99d914,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S6_eEF3_depleted_rep1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S6_eEF3_depleted_rep1,<NA>,E-MTAB-6938:S6_eEF3_depleted_rep1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573602,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/009/ERR2660269,2124455511,ftp.sra.ebi.ac.uk/vol1/err/ERR266/009/ERR2660269,ftp.sra.ebi.ac.uk/vol1/err/ERR266/009/ERR2660269,c67395967094ad09c325df08067dafea,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660269/new_all_S6.fastq.gz,3087882051,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660269/new_all_S6.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660269/new_all_S6.fastq.gz,<NA>,944f6769aad888576199c543789b7441,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27418,ERX2676647,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,Illumina HiSeq 2500 sequencing; Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4753504,S8_eEF3_depleted_rep2,Illumina HiSeq 2500,ERR2660271,79828450,4071250950,SAMEA4753504,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6938:S8_eEF3_depleted_rep2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR266/001/ERR2660271/ERR2660271.fastq.gz,3279968501,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/001/ERR2660271/ERR2660271.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR266/001/ERR2660271/ERR2660271.fastq.gz,f201954ecb82b2b9bc68f47c324dcc44,2018-06-22,2018-06-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,S8_eEF3_depleted_rep2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6938:S8_eEF3_depleted_rep2,<NA>,E-MTAB-6938:S8_eEF3_depleted_rep2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen and cryogenic milling. Cultured at 30 degrees Celsius in 700 ml of synthetic drop-out SC -met-cys medium supplemented with or without 0.5 mM of methionine. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2573603,ERP109495,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR266/001/ERR2660271,2152297917,ftp.sra.ebi.ac.uk/vol1/err/ERR266/001/ERR2660271,ftp.sra.ebi.ac.uk/vol1/err/ERR266/001/ERR2660271,c19e48d69ec829364434a7edef987f55,<NA>,E-MTAB-6938,Ribosome profiling of budding yeast Saccharomyces cerevisiae in eEF3 depleted conditions,<NA>,<NA>,ERA1523062,fasp.sra.ebi.ac.uk:/vol1/run/ERR266/ERR2660271/new_all_S8.fastq.gz,3034473219,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660271/new_all_S8.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR266/ERR2660271/new_all_S8.fastq.gz,<NA>,4eac56e9394c8c213accecd24020c1bd,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696677,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776570,new1_KO_riboseq_S2,Illumina HiSeq 2500,ERR2681846,67361162,3435419262,SAMEA4776570,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_riboseq_S2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/006/ERR2681846/ERR2681846.fastq.gz,2558486376,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/006/ERR2681846/ERR2681846.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/006/ERR2681846/ERR2681846.fastq.gz,3fa09a7375d1e27d54f129fb1f72501a,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_riboseq_S2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_riboseq_S2,<NA>,E-MTAB-6963:new1_KO_riboseq_S2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596519,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/006/ERR2681846,1953473929,ftp.sra.ebi.ac.uk/vol1/err/ERR268/006/ERR2681846,ftp.sra.ebi.ac.uk/vol1/err/ERR268/006/ERR2681846,5162b220c5ea3fb0515b2884fd1e48c1,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681846/new1_S2_pooled_rep3.fastq.gz,2726900690,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681846/new1_S2_pooled_rep3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681846/new1_S2_pooled_rep3.fastq.gz,<NA>,d3ffeeaad35047845d09d7f391686dec,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696678,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776571,new1_KO_riboseq_S4,Illumina HiSeq 2500,ERR2681847,80946528,4128272928,SAMEA4776571,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_riboseq_S4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/007/ERR2681847/ERR2681847.fastq.gz,3034391046,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/007/ERR2681847/ERR2681847.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/007/ERR2681847/ERR2681847.fastq.gz,b5cf20abdb8c715973eb828d08cb7045,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_riboseq_S4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_riboseq_S4,<NA>,E-MTAB-6963:new1_KO_riboseq_S4,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596520,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/007/ERR2681847,2337537910,ftp.sra.ebi.ac.uk/vol1/err/ERR268/007/ERR2681847,ftp.sra.ebi.ac.uk/vol1/err/ERR268/007/ERR2681847,c43d9c2e78639b5ceb220b4d3bca5697,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681847/new1_S4_pooled_rep2.fastq.gz,3244176828,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681847/new1_S4_pooled_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681847/new1_S4_pooled_rep2.fastq.gz,<NA>,3bd8903d0e25a3e25b380748662dbf0f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696679,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776572,new1_KO_riboseq_S6,Illumina HiSeq 2500,ERR2681848,69690799,3554230749,SAMEA4776572,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_riboseq_S6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/008/ERR2681848/ERR2681848.fastq.gz,2655322678,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/008/ERR2681848/ERR2681848.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/008/ERR2681848/ERR2681848.fastq.gz,990cf0eaa18875ddef564b8b13fb795c,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_riboseq_S6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_riboseq_S6,<NA>,E-MTAB-6963:new1_KO_riboseq_S6,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596521,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/008/ERR2681848,2018432977,ftp.sra.ebi.ac.uk/vol1/err/ERR268/008/ERR2681848,ftp.sra.ebi.ac.uk/vol1/err/ERR268/008/ERR2681848,5ea2fb2f47a93351cc7118b16c8c4ec7,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681848/new1_S6_pooled_rep1.fastq.gz,2830291377,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681848/new1_S6_pooled_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681848/new1_S6_pooled_rep1.fastq.gz,<NA>,d8578998890b8ae6c5506220f8a86fe4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696680,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776573,WT_riboseq_S1,Illumina HiSeq 2500,ERR2681849,68722759,3504860709,SAMEA4776573,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_riboseq_S1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/009/ERR2681849/ERR2681849.fastq.gz,2484685042,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/009/ERR2681849/ERR2681849.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/009/ERR2681849/ERR2681849.fastq.gz,0eb0818f9e87e75d26caad3759a76422,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_riboseq_S1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_riboseq_S1,<NA>,E-MTAB-6963:WT_riboseq_S1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596522,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/009/ERR2681849,1979371599,ftp.sra.ebi.ac.uk/vol1/err/ERR268/009/ERR2681849,ftp.sra.ebi.ac.uk/vol1/err/ERR268/009/ERR2681849,6b39689ae1cca8721dbdbd0de32c99b5,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681849/WT_S1_pooled_rep3.fastq.gz,2608812582,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681849/WT_S1_pooled_rep3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681849/WT_S1_pooled_rep3.fastq.gz,<NA>,fd0496024d50ab2d4d5eb69485bf5ce4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696681,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776574,WT_riboseq_S3,Illumina HiSeq 2500,ERR2681850,85579580,4364558580,SAMEA4776574,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_riboseq_S3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/000/ERR2681850/ERR2681850.fastq.gz,3162706951,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/000/ERR2681850/ERR2681850.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/000/ERR2681850/ERR2681850.fastq.gz,d582109fb6f8a2d40c288d38c4009d09,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_riboseq_S3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_riboseq_S3,<NA>,E-MTAB-6963:WT_riboseq_S3,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596523,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/000/ERR2681850,2479134898,ftp.sra.ebi.ac.uk/vol1/err/ERR268/000/ERR2681850,ftp.sra.ebi.ac.uk/vol1/err/ERR268/000/ERR2681850,dbce1e5d889b22eece9096c2a863e5c2,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681850/WT_S3_pooled_rep2.fastq.gz,3361010119,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681850/WT_S3_pooled_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681850/WT_S3_pooled_rep2.fastq.gz,<NA>,261e5d6b114732be751063b7f3af2f5b,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696682,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA4776575,WT_riboseq_S5,Illumina HiSeq 2500,ERR2681851,83078459,4237001409,SAMEA4776575,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_riboseq_S5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/001/ERR2681851/ERR2681851.fastq.gz,3036098300,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/001/ERR2681851/ERR2681851.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/001/ERR2681851/ERR2681851.fastq.gz,17b9077bdf197eedb342df0c5ba9c770,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_riboseq_S5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_riboseq_S5,<NA>,E-MTAB-6963:WT_riboseq_S5,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596524,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/001/ERR2681851,2392558687,ftp.sra.ebi.ac.uk/vol1/err/ERR268/001/ERR2681851,ftp.sra.ebi.ac.uk/vol1/err/ERR268/001/ERR2681851,996031ac6aff8ac3aebbd7083094da34,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681851/WT_S5_pooled_rep1.fastq.gz,3216091543,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681851/WT_S5_pooled_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681851/WT_S5_pooled_rep1.fastq.gz,<NA>,cee721b47ce7cd35a46bb25dd68fdec0,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696683,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776576,new1_KO_RNAseq_S10,Illumina HiSeq 2500,ERR2681852,24694922,1259441022,SAMEA4776576,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_RNAseq_S10_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/002/ERR2681852/ERR2681852.fastq.gz,1033258951,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/002/ERR2681852/ERR2681852.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/002/ERR2681852/ERR2681852.fastq.gz,f75ce03956f3f6d8a4a9ff0656b94ff5,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_RNAseq_S10_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_RNAseq_S10,<NA>,E-MTAB-6963:new1_KO_RNAseq_S10,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596525,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/002/ERR2681852,683742840,ftp.sra.ebi.ac.uk/vol1/err/ERR268/002/ERR2681852,ftp.sra.ebi.ac.uk/vol1/err/ERR268/002/ERR2681852,afcdc30caa9ee49d0dd41fdf991711e4,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681852/new1_S10_RNAseq_pooled_rep2.fastq.gz,1060872597,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681852/new1_S10_RNAseq_pooled_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681852/new1_S10_RNAseq_pooled_rep2.fastq.gz,<NA>,85d31209ffff2a56b70a3c061d70011a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696684,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776577,new1_KO_RNAseq_S12,Illumina HiSeq 2500,ERR2681853,27198724,1387134924,SAMEA4776577,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_RNAseq_S12_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/003/ERR2681853/ERR2681853.fastq.gz,1128301390,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/003/ERR2681853/ERR2681853.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/003/ERR2681853/ERR2681853.fastq.gz,afee742ca15b4c6f3504141343c23b4f,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_RNAseq_S12_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_RNAseq_S12,<NA>,E-MTAB-6963:new1_KO_RNAseq_S12,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596526,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/003/ERR2681853,751153191,ftp.sra.ebi.ac.uk/vol1/err/ERR268/003/ERR2681853,ftp.sra.ebi.ac.uk/vol1/err/ERR268/003/ERR2681853,9c3671efba0128a0f72160aec17c5a11,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681853/new1_S12_RNAseq_pooled_rep1.fastq.gz,1157286286,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681853/new1_S12_RNAseq_pooled_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681853/new1_S12_RNAseq_pooled_rep1.fastq.gz,<NA>,44c7ae553ed700e612093d5d092884e4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696685,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776578,new1_KO_RNAseq_S8,Illumina HiSeq 2500,ERR2681854,42548074,2169951774,SAMEA4776578,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:new1_KO_RNAseq_S8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/004/ERR2681854/ERR2681854.fastq.gz,1813112363,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/004/ERR2681854/ERR2681854.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/004/ERR2681854/ERR2681854.fastq.gz,de7540d312a6797fd9f01de26cf46ac6,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,new1_KO_RNAseq_S8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:new1_KO_RNAseq_S8,<NA>,E-MTAB-6963:new1_KO_RNAseq_S8,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596527,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/004/ERR2681854,1195812994,ftp.sra.ebi.ac.uk/vol1/err/ERR268/004/ERR2681854,ftp.sra.ebi.ac.uk/vol1/err/ERR268/004/ERR2681854,22c01e7aebd72ea0f4973c7a522e61e9,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681854/new1_S8_RNAseq_pooled_rep3.fastq.gz,1865874682,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681854/new1_S8_RNAseq_pooled_rep3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681854/new1_S8_RNAseq_pooled_rep3.fastq.gz,<NA>,9a8778c2192f61f02b5e63f084714b0e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696686,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776579,WT_RNAseq_S11,Illumina HiSeq 2500,ERR2681855,22479763,1146467913,SAMEA4776579,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_RNAseq_S11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/005/ERR2681855/ERR2681855.fastq.gz,933992443,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/005/ERR2681855/ERR2681855.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/005/ERR2681855/ERR2681855.fastq.gz,83ce786c432bd4e635303461e0a00e24,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_RNAseq_S11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_RNAseq_S11,<NA>,E-MTAB-6963:WT_RNAseq_S11,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596528,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/005/ERR2681855,622879062,ftp.sra.ebi.ac.uk/vol1/err/ERR268/005/ERR2681855,ftp.sra.ebi.ac.uk/vol1/err/ERR268/005/ERR2681855,1084f5bf407e2d2b81b1581303a53849,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681855/WT_S11_RNAseq_pooled_rep1.fastq.gz,962423438,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681855/WT_S11_RNAseq_pooled_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681855/WT_S11_RNAseq_pooled_rep1.fastq.gz,<NA>,de8c65c6622fc600ec9049a07ea7cc59,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696687,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776580,WT_RNAseq_S7,Illumina HiSeq 2500,ERR2681856,25728303,1312143453,SAMEA4776580,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_RNAseq_S7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/006/ERR2681856/ERR2681856.fastq.gz,1088797156,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/006/ERR2681856/ERR2681856.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/006/ERR2681856/ERR2681856.fastq.gz,15054d89aa85d6562759fd8e1b2b825a,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_RNAseq_S7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_RNAseq_S7,<NA>,E-MTAB-6963:WT_RNAseq_S7,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596529,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/006/ERR2681856,712153234,ftp.sra.ebi.ac.uk/vol1/err/ERR268/006/ERR2681856,ftp.sra.ebi.ac.uk/vol1/err/ERR268/006/ERR2681856,ff9f7e86f9ccf2584b9aaddd9abfb327,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681856/WT_S7_RNAseq_pooled_rep3.fastq.gz,1115503475,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681856/WT_S7_RNAseq_pooled_rep3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681856/WT_S7_RNAseq_pooled_rep3.fastq.gz,<NA>,597e2414433df519e770bf95dbe86c7f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB27604,ERX2696688,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA4776581,WT_RNAseq_S9,Illumina HiSeq 2500,ERR2681857,24022337,1225139187,SAMEA4776581,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-6963:WT_RNAseq_S9_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR268/007/ERR2681857/ERR2681857.fastq.gz,1001738705,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/007/ERR2681857/ERR2681857.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR268/007/ERR2681857/ERR2681857.fastq.gz,704304b6e6320ef9964709015da42a64,2018-07-04,2018-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,WT_RNAseq_S9_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-6963:WT_RNAseq_S9,<NA>,E-MTAB-6963:WT_RNAseq_S9,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration and subsequent flash-freezing in liquid nitrogen. Frozen cell pellets were lysed using cryogenic milling. Cultured at 20 degrees Celsius in 750 ml of synthetic complete medium up to OD600 of 0.6. TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research). RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS2596530,ERP109708,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR268/007/ERR2681857,666400945,ftp.sra.ebi.ac.uk/vol1/err/ERR268/007/ERR2681857,ftp.sra.ebi.ac.uk/vol1/err/ERR268/007/ERR2681857,8e7f86bd54332b6b34fae60b7ba4e3d9,<NA>,E-MTAB-6963,Ribosome profiling of NEW1 knock-out of budding yeast Saccharomyces cerevisiae,<NA>,<NA>,ERA1534224,fasp.sra.ebi.ac.uk:/vol1/run/ERR268/ERR2681857/WT_S9_RNAseq_pooled_rep2.fastq.gz,1030179917,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681857/WT_S9_RNAseq_pooled_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR268/ERR2681857/WT_S9_RNAseq_pooled_rep2.fastq.gz,<NA>,47b2b32ec67d463091272ce5d6ae9b21,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819159,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939567,chicken_brain_ribo_1,Illumina HiSeq 2500,ERR2812328,89507736,9040281336,SAMEA4939567,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/008/ERR2812328/ERR2812328.fastq.gz,2753287851,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812328/ERR2812328.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812328/ERR2812328.fastq.gz,d99405145c5a293b9dc8861ea4d042b4,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_ribo_1,<NA>,E-MTAB-7247:chicken_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758350,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/008/ERR2812328,3208902588,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812328,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812328,2b34760db78a0093c6035e821b969ebe,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812328/chicken_brain_ribo_1.fastq.gz,2507104144,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812328/chicken_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812328/chicken_brain_ribo_1.fastq.gz,<NA>,7c3f3611b0b6072acc6346ee06362515,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819160,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939568,chicken_brain_ribo_2,Illumina HiSeq 2500,ERR2812329,<NA>,<NA>,SAMEA4939568,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_ribo_2,<NA>,E-MTAB-7247:chicken_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758351,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812329/chicken_brain_ribo_2.fastq.gz,2658456358,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812329/chicken_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812329/chicken_brain_ribo_2.fastq.gz,<NA>,18ee7a0f021cf94ac7f4ed394647beae,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819161,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939569,chicken_brain_ribo_3,Illumina HiSeq 2500,ERR2812330,<NA>,<NA>,SAMEA4939569,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_ribo_3,<NA>,E-MTAB-7247:chicken_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758352,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812330/chicken_brain_ribo_3.fastq.gz,3644754614,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812330/chicken_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812330/chicken_brain_ribo_3.fastq.gz,<NA>,da20800aa9ecba82388b7a3e1f8de365,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819162,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939570,chicken_brain_rna_1,Illumina HiSeq 2500,ERR2812331,78156882,3986000982,SAMEA4939570,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/001/ERR2812331/ERR2812331.fastq.gz,2652776437,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812331/ERR2812331.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812331/ERR2812331.fastq.gz,9af99479261025085ffe761639e62642,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_rna_1,<NA>,E-MTAB-7247:chicken_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758353,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/001/ERR2812331,1741233075,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812331,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812331,d4c94b96012e37ecdc428ca8d0c2d18b,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812331/chicken_brain_rna_1.fastq.gz,2438877920,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812331/chicken_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812331/chicken_brain_rna_1.fastq.gz,<NA>,10c5a98aa07c89b4340a01bbdaa09ce1,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819163,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939571,chicken_brain_rna_2,Illumina HiSeq 2500,ERR2812332,<NA>,<NA>,SAMEA4939571,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_rna_2,<NA>,E-MTAB-7247:chicken_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758354,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz,2748702300,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz,<NA>,ece46e4fb0c1f26316e1190e0f039896,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819164,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939572,chicken_brain_rna_3,Illumina HiSeq 2500,ERR2812333,<NA>,<NA>,SAMEA4939572,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_brain_rna_3,<NA>,E-MTAB-7247:chicken_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758355,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz,2390768468,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz,<NA>,41909d0ff65f49c611554067043568d4,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819165,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939573,chicken_liver_ribo_1,Illumina HiSeq 2500,ERR2812334,50822663,2591955813,SAMEA4939573,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/004/ERR2812334/ERR2812334.fastq.gz,1312823495,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812334/ERR2812334.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812334/ERR2812334.fastq.gz,ce07e246dd54fbf09ff55d86ad9f205a,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_ribo_1,<NA>,E-MTAB-7247:chicken_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758356,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/004/ERR2812334,1046624318,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812334,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812334,397dc7dcca4656d9674fc0d19ba6079e,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812334/chicken_liver_ribo_1.fastq.gz,1177240004,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812334/chicken_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812334/chicken_liver_ribo_1.fastq.gz,<NA>,bf7fdb40ef324efae0ba58c2c4396581,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819166,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939574,chicken_liver_ribo_2,Illumina HiSeq 2500,ERR2812335,<NA>,<NA>,SAMEA4939574,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_ribo_2,<NA>,E-MTAB-7247:chicken_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758357,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812335/chicken_liver_ribo_2.fastq.gz,1896247202,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812335/chicken_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812335/chicken_liver_ribo_2.fastq.gz,<NA>,ddd2c5286a334f5d5dc91aab87dd3c5a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819167,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939575,chicken_liver_ribo_3,Illumina HiSeq 2500,ERR2812336,<NA>,<NA>,SAMEA4939575,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_ribo_3,<NA>,E-MTAB-7247:chicken_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758358,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812336/chicken_liver_ribo_3.fastq.gz,5166486900,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812336/chicken_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812336/chicken_liver_ribo_3.fastq.gz,<NA>,fed3691fd2c796c0bf48af5895c13371,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819168,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939576,chicken_liver_rna_1,Illumina HiSeq 2500,ERR2812337,102696548,5237523948,SAMEA4939576,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/007/ERR2812337/ERR2812337.fastq.gz,2958121986,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812337/ERR2812337.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812337/ERR2812337.fastq.gz,2447190aacfb941cee320f12ce1a6e43,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_rna_1,<NA>,E-MTAB-7247:chicken_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758359,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/007/ERR2812337,2201620960,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812337,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812337,cdf080d1b58b4e50c2df76fdfc02b5f3,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812337/chicken_liver_rna_1.fastq.gz,2678000769,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812337/chicken_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812337/chicken_liver_rna_1.fastq.gz,<NA>,6aee14e5a4a41dbdf15b90c40a66afe0,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819169,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939577,chicken_liver_rna_2,Illumina HiSeq 2500,ERR2812338,<NA>,<NA>,SAMEA4939577,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_rna_2,<NA>,E-MTAB-7247:chicken_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758360,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz,4788127159,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz,<NA>,e5a61276d9336ebf8a826388ff1da8e2,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819170,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939578,chicken_liver_rna_3,Illumina HiSeq 2500,ERR2812339,<NA>,<NA>,SAMEA4939578,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_rna_3,<NA>,E-MTAB-7247:chicken_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758361,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz,5661008289,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz,<NA>,b11fb5c6ddcdd86e98ec5cd6df542303,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819171,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939579,chicken_testis_ribo_1,Illumina HiSeq 2500,ERR2812340,176588839,9006030789,SAMEA4939579,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz,4778699566,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz,eeda42d3c6b84f08ee63f02681351689,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_ribo_1,<NA>,E-MTAB-7247:chicken_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758362,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/000/ERR2812340,3866865953,ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812340,ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812340,1ffdf77ed979d88a6d171adfe42784e9,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz,4330023930,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz,<NA>,ce27f54856f3da8b07d80f06e8749ca9,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819172,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939580,chicken_testis_ribo_2,Illumina HiSeq 2500,ERR2812341,<NA>,<NA>,SAMEA4939580,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_ribo_2,<NA>,E-MTAB-7247:chicken_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758363,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz,2675433665,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz,<NA>,ebe921efe57639961063143d7f7bfad4,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819173,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939581,chicken_testis_ribo_3,Illumina HiSeq 2500,ERR2812342,<NA>,<NA>,SAMEA4939581,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_ribo_3,<NA>,E-MTAB-7247:chicken_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758364,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812342/chicken_testis_ribo_3.fastq.gz,4283027459,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812342/chicken_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812342/chicken_testis_ribo_3.fastq.gz,<NA>,ca83889829f2d3747c8b57a5337bf9cd,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819174,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939582,chicken_testis_rna_1,Illumina HiSeq 2500,ERR2812343,69052194,3521661894,SAMEA4939582,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/003/ERR2812343/ERR2812343.fastq.gz,2274304876,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/003/ERR2812343/ERR2812343.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/003/ERR2812343/ERR2812343.fastq.gz,d873545c97d1b3a5c8a4a58060102959,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_rna_1,<NA>,E-MTAB-7247:chicken_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758365,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/003/ERR2812343,1473342757,ftp.sra.ebi.ac.uk/vol1/err/ERR281/003/ERR2812343,ftp.sra.ebi.ac.uk/vol1/err/ERR281/003/ERR2812343,a011cc24a662ceabc1e902c410d9158f,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812343/chicken_testis_rna_1.fastq.gz,2085284218,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812343/chicken_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812343/chicken_testis_rna_1.fastq.gz,<NA>,a4a48fea8031cdb278402ee587a6e03d,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819175,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939583,chicken_testis_rna_2,Illumina HiSeq 2500,ERR2812344,<NA>,<NA>,SAMEA4939583,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_rna_2,<NA>,E-MTAB-7247:chicken_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758366,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz,2397183306,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz,<NA>,ac0ff7868293955592f39fc0bf728333,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819176,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939584,chicken_testis_rna_3,Illumina HiSeq 2500,ERR2812345,<NA>,<NA>,SAMEA4939584,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_testis_rna_3,<NA>,E-MTAB-7247:chicken_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758367,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz,3304972131,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz,<NA>,cac0a9de52b09dae17b40ce3f5ea7bcf,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819177,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939585,human_brain_ribo_1,Illumina HiSeq 2500,ERR2812346,<NA>,<NA>,SAMEA4939585,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_ribo_1,<NA>,E-MTAB-7247:human_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758368,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz,3178570176,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz,<NA>,c09d7a3e32afc5148df5f9cfcb437b7e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819178,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939586,human_brain_ribo_2,Illumina HiSeq 2500,ERR2812347,<NA>,<NA>,SAMEA4939586,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_ribo_2,<NA>,E-MTAB-7247:human_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758369,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz,3570312065,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz,<NA>,17bca2a5f61b881069d68a9cee9e42c2,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819179,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939587,human_brain_ribo_3,Illumina HiSeq 2500,ERR2812348,<NA>,<NA>,SAMEA4939587,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_ribo_3,<NA>,E-MTAB-7247:human_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758370,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz,2884466964,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz,<NA>,eaaac9d14663b57b3470a3fa0ab3f8be,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819180,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939588,human_brain_rna_1,Illumina HiSeq 2500,ERR2812349,<NA>,<NA>,SAMEA4939588,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_rna_1,<NA>,E-MTAB-7247:human_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758371,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz,4721884572,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz,<NA>,8d599b2223fc1095bd750c810bd95576,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819181,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939589,human_brain_rna_2,Illumina HiSeq 2500,ERR2812350,<NA>,<NA>,SAMEA4939589,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_rna_2,<NA>,E-MTAB-7247:human_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758372,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz,6561145490,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz,<NA>,4f4fd329cdbfbf70612be93369865674,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819182,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939590,human_brain_rna_3,Illumina HiSeq 2500,ERR2812351,<NA>,<NA>,SAMEA4939590,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_brain_rna_3,<NA>,E-MTAB-7247:human_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758373,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz,6741967887,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz,<NA>,4bcbea53a6d3911f9ba22d7d505241ca,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819183,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939591,human_liver_ribo_1,Illumina HiSeq 2500,ERR2812352,<NA>,<NA>,SAMEA4939591,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_ribo_1,<NA>,E-MTAB-7247:human_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758374,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz,1868149033,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz,<NA>,2e8522bb5952ff42279ad028d4e2dc41,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819184,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939592,human_liver_ribo_2,Illumina HiSeq 2500,ERR2812353,<NA>,<NA>,SAMEA4939592,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_ribo_2,<NA>,E-MTAB-7247:human_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758375,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz,3264470178,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz,<NA>,fc90d8777eebbed01a41c7ea7f982302,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819185,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939593,human_liver_ribo_3,Illumina HiSeq 2500,ERR2812354,<NA>,<NA>,SAMEA4939593,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_ribo_3,<NA>,E-MTAB-7247:human_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758376,ERP111066,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz,5276013267,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz,<NA>,ceb77d5ff75ea57ba00cea639dce920c,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819186,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939594,human_liver_rna_1,Illumina HiSeq 2500,ERR2812355,<NA>,<NA>,SAMEA4939594,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_rna_1,<NA>,E-MTAB-7247:human_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758377,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz,7369874634,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz,<NA>,aaaa91705bf59abba98d59bff4780403,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819187,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939595,human_liver_rna_2,Illumina HiSeq 2500,ERR2812356,<NA>,<NA>,SAMEA4939595,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_rna_2,<NA>,E-MTAB-7247:human_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758378,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz,6853412150,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz,<NA>,8fcdcc6b40a0e34d8d947a53ce4e9499,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819188,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939596,human_liver_rna_3,Illumina HiSeq 2500,ERR2812357,<NA>,<NA>,SAMEA4939596,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_liver_rna_3,<NA>,E-MTAB-7247:human_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758379,ERP111066,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz,5259012589,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz,<NA>,9ab36f8211b18b238f45b523325035c2,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819189,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939597,human_testis_ribo_1,Illumina HiSeq 2500,ERR2812358,<NA>,<NA>,SAMEA4939597,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_ribo_1,<NA>,E-MTAB-7247:human_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758380,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz,4667214891,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz,<NA>,b087df97b018689a2110898cfd1b7d33,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819190,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939598,human_testis_ribo_2,Illumina HiSeq 2500,ERR2812359,<NA>,<NA>,SAMEA4939598,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_ribo_2,<NA>,E-MTAB-7247:human_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758381,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz,3347099828,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz,<NA>,32ca5adcbb4640a4daab2130c6087785,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819191,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939599,human_testis_ribo_3,Illumina HiSeq 2500,ERR2812360,<NA>,<NA>,SAMEA4939599,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_ribo_3,<NA>,E-MTAB-7247:human_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758382,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz,5917939009,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz,<NA>,589e94f25f6f844e4a41e99c36f42684,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819192,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939600,human_testis_rna_1,Illumina HiSeq 2500,ERR2812361,<NA>,<NA>,SAMEA4939600,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_rna_1,<NA>,E-MTAB-7247:human_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758383,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz,2247251094,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz,<NA>,1ab7f2e9de9d3abba340c7ed43ab6b50,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819193,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939601,human_testis_rna_2,Illumina HiSeq 2500,ERR2812362,<NA>,<NA>,SAMEA4939601,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_rna_2,<NA>,E-MTAB-7247:human_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758384,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz,8308614348,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz,<NA>,afbcc7d1264a969e9fe19aae93d005c5,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819194,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9606,Homo sapiens,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939602,human_testis_rna_3,Illumina HiSeq 2500,ERR2812363,<NA>,<NA>,SAMEA4939602,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:human_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,human_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:human_testis_rna_3,<NA>,E-MTAB-7247:human_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758385,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz,6436821091,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz,<NA>,39186c63fdcef5f6d680369d55f0da65,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819195,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939603,macaque_brain_ribo_1,Illumina HiSeq 2500,ERR2812364,<NA>,<NA>,SAMEA4939603,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_ribo_1,<NA>,E-MTAB-7247:macaque_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758386,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz,2011776255,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz,<NA>,a5d4cd58192a9f2d63778f09a430c3fd,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819196,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939604,macaque_brain_ribo_2,Illumina HiSeq 2500,ERR2812365,<NA>,<NA>,SAMEA4939604,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_ribo_2,<NA>,E-MTAB-7247:macaque_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758387,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz,1811989107,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz,<NA>,40061c21dae7ec6b454b9fb70de595e6,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819197,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939605,macaque_brain_ribo_3,Illumina HiSeq 2500,ERR2812366,<NA>,<NA>,SAMEA4939605,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_ribo_3,<NA>,E-MTAB-7247:macaque_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758388,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz,1457293319,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz,<NA>,09cfcf5ce35d1a7a599a201f2ef87b9e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819198,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939606,macaque_brain_rna_1,Illumina HiSeq 2500,ERR2812367,<NA>,<NA>,SAMEA4939606,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_rna_1,<NA>,E-MTAB-7247:macaque_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758389,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz,4177020682,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz,<NA>,78b971c44621208b5ffe3a9ba8187960,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819199,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939607,macaque_brain_rna_2,Illumina HiSeq 2500,ERR2812368,<NA>,<NA>,SAMEA4939607,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_rna_2,<NA>,E-MTAB-7247:macaque_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758390,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz,3480059130,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz,<NA>,c58679acb470ddebeaca55b27266c0c9,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819200,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939608,macaque_brain_rna_3,Illumina HiSeq 2500,ERR2812369,<NA>,<NA>,SAMEA4939608,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_brain_rna_3,<NA>,E-MTAB-7247:macaque_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758391,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz,5377995284,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz,<NA>,6c1c0432d7a4407b1fad3fc450f1cace,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819201,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939609,macaque_liver_ribo_1,Illumina HiSeq 2500,ERR2812370,<NA>,<NA>,SAMEA4939609,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_ribo_1,<NA>,E-MTAB-7247:macaque_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758392,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz,1516435228,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz,<NA>,0c202649daa808f1fa5121d33eb82586,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819202,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939610,macaque_liver_ribo_2,Illumina HiSeq 2500,ERR2812371,<NA>,<NA>,SAMEA4939610,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_ribo_2,<NA>,E-MTAB-7247:macaque_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758393,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz,4387128178,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz,<NA>,dc13d21ab0d2da8bb6421183ea940cc8,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819203,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939611,macaque_liver_ribo_3,Illumina HiSeq 2500,ERR2812372,<NA>,<NA>,SAMEA4939611,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_ribo_3,<NA>,E-MTAB-7247:macaque_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758394,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz,1781413198,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz,<NA>,7e3f4bc0d47d5ec49db234fd1497ff78,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819204,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939612,macaque_liver_rna_1,Illumina HiSeq 2500,ERR2812373,<NA>,<NA>,SAMEA4939612,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_rna_1,<NA>,E-MTAB-7247:macaque_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758395,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz,3222326391,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz,<NA>,49f5c704344ca8284a05a933f12e8955,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819205,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939613,macaque_liver_rna_2,Illumina HiSeq 2500,ERR2812374,<NA>,<NA>,SAMEA4939613,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_rna_2,<NA>,E-MTAB-7247:macaque_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758396,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz,4425994878,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz,<NA>,c4f65cf62f5b9728fa7f68f78f9ae8bc,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819206,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939614,macaque_liver_rna_3,Illumina HiSeq 2500,ERR2812375,<NA>,<NA>,SAMEA4939614,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_liver_rna_3,<NA>,E-MTAB-7247:macaque_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758397,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz,5410031650,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz,<NA>,c42f6231de35259ebe5e4186440d60e2,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819207,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939615,macaque_testis_ribo_1,Illumina HiSeq 2500,ERR2812376,<NA>,<NA>,SAMEA4939615,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_ribo_1,<NA>,E-MTAB-7247:macaque_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758398,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz,3581301244,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz,<NA>,803e8058e13b4099b977fe8a93622b1c,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819208,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939616,macaque_testis_ribo_2,Illumina HiSeq 2500,ERR2812377,<NA>,<NA>,SAMEA4939616,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_ribo_2,<NA>,E-MTAB-7247:macaque_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758399,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz,1894421321,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz,<NA>,a60d6a26765570160840e000e5e0d9d8,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819209,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939617,macaque_testis_ribo_3,Illumina HiSeq 2500,ERR2812378,<NA>,<NA>,SAMEA4939617,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_ribo_3,<NA>,E-MTAB-7247:macaque_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758400,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz,3972316269,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz,<NA>,f74594f0722d4cb387f98f5760e54dee,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819210,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939618,macaque_testis_rna_1,Illumina HiSeq 2500,ERR2812379,<NA>,<NA>,SAMEA4939618,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_rna_1,<NA>,E-MTAB-7247:macaque_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758401,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz,1691666019,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz,<NA>,f22c403a21df510348e7b6b0a07a69bd,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819211,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939619,macaque_testis_rna_2,Illumina HiSeq 2500,ERR2812380,<NA>,<NA>,SAMEA4939619,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_rna_2,<NA>,E-MTAB-7247:macaque_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758402,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz,2350440132,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz,<NA>,194e8209b559d614a81e9c37d7f0b94a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819212,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9544,Macaca mulatta,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939620,macaque_testis_rna_3,Illumina HiSeq 2500,ERR2812381,<NA>,<NA>,SAMEA4939620,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:macaque_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,macaque_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:macaque_testis_rna_3,<NA>,E-MTAB-7247:macaque_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758403,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz,1670149927,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz,<NA>,3951de9e0a7c3736837243b496c5b266,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819213,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939621,mouse_brain_ribo_1,Illumina HiSeq 2500,ERR2812382,125913653,12717278953,SAMEA4939621,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/002/ERR2812382/ERR2812382.fastq.gz,4268499466,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/002/ERR2812382/ERR2812382.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/002/ERR2812382/ERR2812382.fastq.gz,9e240fddeb85c06efd560a31377516a5,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_ribo_1,<NA>,E-MTAB-7247:mouse_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758404,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/002/ERR2812382,4776213072,ftp.sra.ebi.ac.uk/vol1/err/ERR281/002/ERR2812382,ftp.sra.ebi.ac.uk/vol1/err/ERR281/002/ERR2812382,7a75f5b6eccdf2f3971b018bbfe49720,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812382/mouse_brain_ribo_1.fastq.gz,3932289156,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812382/mouse_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812382/mouse_brain_ribo_1.fastq.gz,<NA>,11f1ccbf68fc9d2fd7f6c803c183523a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819214,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939622,mouse_brain_ribo_2,Illumina HiSeq 2500,ERR2812383,<NA>,<NA>,SAMEA4939622,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_ribo_2,<NA>,E-MTAB-7247:mouse_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758405,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812383/mouse_brain_ribo_2.fastq.gz,1929836249,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812383/mouse_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812383/mouse_brain_ribo_2.fastq.gz,<NA>,cda902fbd2e67b3fd842b29e5df92b25,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819215,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939623,mouse_brain_ribo_3,Illumina HiSeq 2500,ERR2812384,<NA>,<NA>,SAMEA4939623,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_ribo_3,<NA>,E-MTAB-7247:mouse_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758406,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812384/mouse_brain_ribo_3.fastq.gz,1738227815,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812384/mouse_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812384/mouse_brain_ribo_3.fastq.gz,<NA>,804be0646d6860c16fab0caba514c022,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819216,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939624,mouse_brain_rna_1,Illumina HiSeq 2500,ERR2812385,59718135,6031531635,SAMEA4939624,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/005/ERR2812385/ERR2812385.fastq.gz,2537307332,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/005/ERR2812385/ERR2812385.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/005/ERR2812385/ERR2812385.fastq.gz,a3635055bba0b6597f0722da04fb456e,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_rna_1,<NA>,E-MTAB-7247:mouse_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758407,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/005/ERR2812385,2294551525,ftp.sra.ebi.ac.uk/vol1/err/ERR281/005/ERR2812385,ftp.sra.ebi.ac.uk/vol1/err/ERR281/005/ERR2812385,fc5f2831b1b2c7fbf93519776d007dfb,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812385/mouse_brain_rna_1.fastq.gz,2372355020,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812385/mouse_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812385/mouse_brain_rna_1.fastq.gz,<NA>,7b192069c448ea91f06e8b316045522d,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819217,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939625,mouse_brain_rna_2,Illumina HiSeq 2500,ERR2812386,<NA>,<NA>,SAMEA4939625,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_rna_2,<NA>,E-MTAB-7247:mouse_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758408,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz,3436704554,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz,<NA>,178001a65a52da3d2ee4e1818fb7ffbe,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819218,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939626,mouse_brain_rna_3,Illumina HiSeq 2500,ERR2812387,<NA>,<NA>,SAMEA4939626,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_brain_rna_3,<NA>,E-MTAB-7247:mouse_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758409,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz,3045904505,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz,<NA>,6091d3140113ff401a628c5548213b2e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819219,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939627,mouse_liver_ribo_1,Illumina HiSeq 2500,ERR2812388,133782505,11314315655,SAMEA4939627,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz,4120884605,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz,d7ee0c710835eab39953d000e29d660b,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_ribo_1,<NA>,E-MTAB-7247:mouse_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758410,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/008/ERR2812388,4354094998,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812388,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812388,499e1a64e500dfd99ef2f9863527dc91,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz,3764801571,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz,<NA>,c02a71475beeab62650f5214a4a9f3d2,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819220,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939628,mouse_liver_ribo_2,Illumina HiSeq 2500,ERR2812389,<NA>,<NA>,SAMEA4939628,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_ribo_2,<NA>,E-MTAB-7247:mouse_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758411,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz,2646508598,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz,<NA>,70fe0d8eedc01568380d083b8ecadfb7,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819221,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939629,mouse_liver_ribo_3,Illumina HiSeq 2500,ERR2812390,<NA>,<NA>,SAMEA4939629,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_ribo_3,<NA>,E-MTAB-7247:mouse_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758412,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812390/mouse_liver_ribo_3.fastq.gz,3017231964,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812390/mouse_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812390/mouse_liver_ribo_3.fastq.gz,<NA>,b718970af6a16f2c634d8b6df20ff1f1,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819222,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939630,mouse_liver_rna_1,Illumina HiSeq 2500,ERR2812391,56370619,5693432519,SAMEA4939630,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/001/ERR2812391/ERR2812391.fastq.gz,2314301040,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812391/ERR2812391.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812391/ERR2812391.fastq.gz,60a4e476d8e3756ad1bf53a29aeb9c08,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_rna_1,<NA>,E-MTAB-7247:mouse_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758413,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/001/ERR2812391,2157106833,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812391,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812391,efcf614cc5c1ac841f7d0e044e1b1589,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812391/mouse_liver_rna_1.fastq.gz,2159081932,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812391/mouse_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812391/mouse_liver_rna_1.fastq.gz,<NA>,851d71fe8d50897502b9b9a75a84d5ab,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819223,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939631,mouse_liver_rna_2,Illumina HiSeq 2500,ERR2812392,<NA>,<NA>,SAMEA4939631,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_rna_2,<NA>,E-MTAB-7247:mouse_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758414,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812392/mouse_liver_rna_2.fastq.gz,2492914471,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812392/mouse_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812392/mouse_liver_rna_2.fastq.gz,<NA>,ecfed1efcbc5def4db57e905780f4a7d,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819224,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939632,mouse_liver_rna_3,Illumina HiSeq 2500,ERR2812393,<NA>,<NA>,SAMEA4939632,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_rna_3,<NA>,E-MTAB-7247:mouse_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758415,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812393/mouse_liver_rna_3.fastq.gz,2581622774,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812393/mouse_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812393/mouse_liver_rna_3.fastq.gz,<NA>,3cf85c88f8c84610bdce678b1bf82201,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819225,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939633,mouse_testis_ribo_1,Illumina HiSeq 2500,ERR2812394,117238132,11841051332,SAMEA4939633,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/004/ERR2812394/ERR2812394.fastq.gz,3934454790,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812394/ERR2812394.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812394/ERR2812394.fastq.gz,3abaf65242d24af1cc73a4f60ff7fba9,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_ribo_1,<NA>,E-MTAB-7247:mouse_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758416,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/004/ERR2812394,4458164480,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812394,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812394,971a9cedf9d7b3e4c5ead513045adf64,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812394/mouse_testis_ribo_1.fastq.gz,3621847125,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812394/mouse_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812394/mouse_testis_ribo_1.fastq.gz,<NA>,8d6272792d6fa01da90dd6ecaa9877e4,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819226,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939634,mouse_testis_ribo_2,Illumina HiSeq 2500,ERR2812395,<NA>,<NA>,SAMEA4939634,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_ribo_2,<NA>,E-MTAB-7247:mouse_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758417,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812395/mouse_testis_ribo_2.fastq.gz,1823811698,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812395/mouse_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812395/mouse_testis_ribo_2.fastq.gz,<NA>,3555cbf77803ddb642e6bafcfa468ad6,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819227,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939635,mouse_testis_ribo_3,Illumina HiSeq 2500,ERR2812396,<NA>,<NA>,SAMEA4939635,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_ribo_3,<NA>,E-MTAB-7247:mouse_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758418,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812396/mouse_testis_ribo_3.fastq.gz,4002716289,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812396/mouse_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812396/mouse_testis_ribo_3.fastq.gz,<NA>,a43e80d952b2aa84896071855cd2b474,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819228,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939636,mouse_testis_rna_1,Illumina HiSeq 2500,ERR2812397,60491740,6109665740,SAMEA4939636,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/007/ERR2812397/ERR2812397.fastq.gz,2508147468,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812397/ERR2812397.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812397/ERR2812397.fastq.gz,58a98516c7afd91b7269b6097006de15,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_rna_1,<NA>,E-MTAB-7247:mouse_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758419,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/007/ERR2812397,2302541278,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812397,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812397,9898b6263af2ba2dab31972ea8753fc4,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812397/mouse_testis_rna_1.fastq.gz,2341383844,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812397/mouse_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812397/mouse_testis_rna_1.fastq.gz,<NA>,1624f74c4d055ae6b1a820e540686484,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819229,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939637,mouse_testis_rna_2,Illumina HiSeq 2500,ERR2812398,<NA>,<NA>,SAMEA4939637,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_rna_2,<NA>,E-MTAB-7247:mouse_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758420,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz,1359523458,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz,<NA>,ee7ebe08dcc7532cd8f18ced4cf238ef,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819230,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939638,mouse_testis_rna_3,Illumina HiSeq 2500,ERR2812399,<NA>,<NA>,SAMEA4939638,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_testis_rna_3,<NA>,E-MTAB-7247:mouse_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758421,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812399/mouse_testis_rna_3.fastq.gz,3049792017,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812399/mouse_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812399/mouse_testis_rna_3.fastq.gz,<NA>,5fd6f1fd982566cd56c1ad731375b8fc,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819231,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939639,opossum_brain_ribo_1,Illumina HiSeq 2500,ERR2812400,99962696,5098097496,SAMEA4939639,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz,2896842733,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz,48578d41b2530e38ea2f5f3a22f8366f,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_ribo_1,<NA>,E-MTAB-7247:opossum_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758422,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/000/ERR2812400,2203212513,ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812400,ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812400,c3f186a687b96b2db76a7958cc157112,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz,2631349148,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz,<NA>,6d40acca565af608d5a6ba306195c40e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819232,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939640,opossum_brain_ribo_2,Illumina HiSeq 2500,ERR2812401,<NA>,<NA>,SAMEA4939640,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_ribo_2,<NA>,E-MTAB-7247:opossum_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758423,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz,2731686040,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz,<NA>,2eb9a510377ae631471d1aebfdbab052,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819233,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939641,opossum_brain_ribo_3,Illumina HiSeq 2500,ERR2812402,<NA>,<NA>,SAMEA4939641,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_ribo_3,<NA>,E-MTAB-7247:opossum_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758424,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812402/opossum_brain_ribo_3.fastq.gz,3788315711,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812402/opossum_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812402/opossum_brain_ribo_3.fastq.gz,<NA>,30b7314cbf4f9d95e7ecc23d529e46dc,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819234,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939642,opossum_brain_rna_1,Illumina HiSeq 2500,ERR2812403,118076072,6021879672,SAMEA4939642,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/003/ERR2812403/ERR2812403.fastq.gz,3471005137,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/003/ERR2812403/ERR2812403.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/003/ERR2812403/ERR2812403.fastq.gz,804e5f1397c5e24f38ae381fdf24d2e3,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_rna_1,<NA>,E-MTAB-7247:opossum_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758425,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/003/ERR2812403,2422753655,ftp.sra.ebi.ac.uk/vol1/err/ERR281/003/ERR2812403,ftp.sra.ebi.ac.uk/vol1/err/ERR281/003/ERR2812403,ed206096074d2b3bb327ee8156ee23ce,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812403/opossum_brain_rna_1.fastq.gz,3138592370,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812403/opossum_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812403/opossum_brain_rna_1.fastq.gz,<NA>,e4321e423ba393c26a80b9a8f8d12d0e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819235,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939643,opossum_brain_rna_2,Illumina HiSeq 2500,ERR2812404,<NA>,<NA>,SAMEA4939643,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_rna_2,<NA>,E-MTAB-7247:opossum_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758426,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812404/opossum_brain_rna_2.fastq.gz,3687429534,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812404/opossum_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812404/opossum_brain_rna_2.fastq.gz,<NA>,16e8a19d005c415a2f6cd67c03f3ecac,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819236,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939644,opossum_brain_rna_3,Illumina HiSeq 2500,ERR2812405,<NA>,<NA>,SAMEA4939644,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_brain_rna_3,<NA>,E-MTAB-7247:opossum_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758427,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812405/opossum_brain_rna_3.fastq.gz,5107390104,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812405/opossum_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812405/opossum_brain_rna_3.fastq.gz,<NA>,963701c17a521825fe9347eb5c5bcf23,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819237,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939645,opossum_liver_ribo_1,Illumina HiSeq 2500,ERR2812406,102073266,7960719316,SAMEA4939645,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/006/ERR2812406/ERR2812406.fastq.gz,2409138542,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/006/ERR2812406/ERR2812406.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/006/ERR2812406/ERR2812406.fastq.gz,186341bf0cfa9c0fff7ec852f60cf9f3,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_ribo_1,<NA>,E-MTAB-7247:opossum_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758428,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/006/ERR2812406,2629742309,ftp.sra.ebi.ac.uk/vol1/err/ERR281/006/ERR2812406,ftp.sra.ebi.ac.uk/vol1/err/ERR281/006/ERR2812406,fb6f256241c26c6e3de9665e8c2bbfb5,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812406/opossum_liver_ribo_1.fastq.gz,2521127391,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812406/opossum_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812406/opossum_liver_ribo_1.fastq.gz,<NA>,1f8314fa5f1ed82fd7a9fcf83ddaf42a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819238,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939646,opossum_liver_ribo_2,Illumina HiSeq 2500,ERR2812407,<NA>,<NA>,SAMEA4939646,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_ribo_2,<NA>,E-MTAB-7247:opossum_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758429,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812407/opossum_liver_ribo_2.fastq.gz,1817893341,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812407/opossum_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812407/opossum_liver_ribo_2.fastq.gz,<NA>,30c8d4e1c24a105885d9cc565423fe22,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819239,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939647,opossum_liver_ribo_3,Illumina HiSeq 2500,ERR2812408,<NA>,<NA>,SAMEA4939647,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_ribo_3,<NA>,E-MTAB-7247:opossum_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758430,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812408/opossum_liver_ribo_3.fastq.gz,4032706404,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812408/opossum_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812408/opossum_liver_ribo_3.fastq.gz,<NA>,d555d160e28bc6f278f034d4924ce02f,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819240,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939648,opossum_liver_rna_1,Illumina HiSeq 2500,ERR2812409,122985784,8335560284,SAMEA4939648,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/009/ERR2812409/ERR2812409.fastq.gz,3224986661,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/009/ERR2812409/ERR2812409.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/009/ERR2812409/ERR2812409.fastq.gz,231a6bf888cf1a3259c5b76934834d54,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_rna_1,<NA>,E-MTAB-7247:opossum_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758431,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/009/ERR2812409,2914104854,ftp.sra.ebi.ac.uk/vol1/err/ERR281/009/ERR2812409,ftp.sra.ebi.ac.uk/vol1/err/ERR281/009/ERR2812409,d13bf6c5490fca2a5508c4a2272d9932,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812409/opossum_liver_rna_1.fastq.gz,3370500884,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812409/opossum_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812409/opossum_liver_rna_1.fastq.gz,<NA>,553be9c95bf79161370afab163150b86,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819241,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939649,opossum_liver_rna_2,Illumina HiSeq 2500,ERR2812410,<NA>,<NA>,SAMEA4939649,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_rna_2,<NA>,E-MTAB-7247:opossum_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758432,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz,1740757015,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz,<NA>,8409e903ea2ab751c72c297fc2663b66,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819242,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939650,opossum_liver_rna_3,Illumina HiSeq 2500,ERR2812411,<NA>,<NA>,SAMEA4939650,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_liver_rna_3,<NA>,E-MTAB-7247:opossum_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758433,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz,6260439467,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz,<NA>,8d2cbed3ef07888f329d87ead01bfeea,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819243,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939651,opossum_testis_ribo_1,Illumina HiSeq 2500,ERR2812412,372136872,18978980472,SAMEA4939651,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/002/ERR2812412/ERR2812412.fastq.gz,10564812460,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/002/ERR2812412/ERR2812412.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/002/ERR2812412/ERR2812412.fastq.gz,c82be7b3a481ba2a5373d7b2e7868f3d,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_ribo_1,<NA>,E-MTAB-7247:opossum_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758434,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/002/ERR2812412,8292995944,ftp.sra.ebi.ac.uk/vol1/err/ERR281/002/ERR2812412,ftp.sra.ebi.ac.uk/vol1/err/ERR281/002/ERR2812412,8298a84216290825ac6800a8e4f59593,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812412/opossum_testis_ribo_1.fastq.gz,9657387852,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812412/opossum_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812412/opossum_testis_ribo_1.fastq.gz,<NA>,4d901ca345965b1c31ddf08c7a9df9f9,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819244,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939652,opossum_testis_ribo_2,Illumina HiSeq 2500,ERR2812413,<NA>,<NA>,SAMEA4939652,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_ribo_2,<NA>,E-MTAB-7247:opossum_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758435,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812413/opossum_testis_ribo_2.fastq.gz,1920046837,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812413/opossum_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812413/opossum_testis_ribo_2.fastq.gz,<NA>,72ce66e0e82526eaaa007d564792816e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819245,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939653,opossum_testis_ribo_3,Illumina HiSeq 2500,ERR2812414,<NA>,<NA>,SAMEA4939653,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_ribo_3,<NA>,E-MTAB-7247:opossum_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758436,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812414/opossum_testis_ribo_3.fastq.gz,3552332473,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812414/opossum_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812414/opossum_testis_ribo_3.fastq.gz,<NA>,c2ac91a452c4d7852ddc16c5a160522e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819246,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939654,opossum_testis_rna_1,Illumina HiSeq 2500,ERR2812415,91675215,4675435965,SAMEA4939654,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/005/ERR2812415/ERR2812415.fastq.gz,2713060853,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/005/ERR2812415/ERR2812415.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/005/ERR2812415/ERR2812415.fastq.gz,7cc81ec9e450a3d8b5e83d271470dac1,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_rna_1,<NA>,E-MTAB-7247:opossum_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758437,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/005/ERR2812415,1847112796,ftp.sra.ebi.ac.uk/vol1/err/ERR281/005/ERR2812415,ftp.sra.ebi.ac.uk/vol1/err/ERR281/005/ERR2812415,c46c16c0b59feb5d6782eab3e30b0297,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812415/opossum_testis_rna_1.fastq.gz,2809115043,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812415/opossum_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812415/opossum_testis_rna_1.fastq.gz,<NA>,16703df2c9bf90adb852477d25c58327,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819247,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939655,opossum_testis_rna_2,Illumina HiSeq 2500,ERR2812416,<NA>,<NA>,SAMEA4939655,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_rna_2,<NA>,E-MTAB-7247:opossum_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758438,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz,6033876618,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz,<NA>,5ece787e1627d328402e8edd3511b5be,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819248,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,13616,Monodelphis domestica,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939656,opossum_testis_rna_3,Illumina HiSeq 2500,ERR2812417,<NA>,<NA>,SAMEA4939656,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:opossum_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,opossum_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:opossum_testis_rna_3,<NA>,E-MTAB-7247:opossum_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758439,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812417/opossum_testis_rna_3.fastq.gz,2158161396,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812417/opossum_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812417/opossum_testis_rna_3.fastq.gz,<NA>,8d04f9228b396c44abc5624b277741fa,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819249,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939657,platypus_brain_ribo_1,Illumina HiSeq 2500,ERR2812418,524355445,33524134145,SAMEA4939657,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/008/ERR2812418/ERR2812418.fastq.gz,14452388871,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812418/ERR2812418.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812418/ERR2812418.fastq.gz,f416c103310a442a91d087a779369969,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_ribo_1,<NA>,E-MTAB-7247:platypus_brain_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758440,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/008/ERR2812418,13588505161,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812418,ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812418,bf0a740b84d99e62a322236b6903ae4b,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812418/platypus_brain_ribo_1.fastq.gz,13132247472,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812418/platypus_brain_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812418/platypus_brain_ribo_1.fastq.gz,<NA>,56471f02da96860b8fe932f0116c4cab,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819250,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939658,platypus_brain_ribo_2,Illumina HiSeq 2500,ERR2812419,<NA>,<NA>,SAMEA4939658,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_ribo_2,<NA>,E-MTAB-7247:platypus_brain_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758441,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812419/platypus_brain_ribo_2.fastq.gz,9344149843,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812419/platypus_brain_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812419/platypus_brain_ribo_2.fastq.gz,<NA>,21e0f4e1d0ea46ac02e53cc7d02927a4,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819251,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939659,platypus_brain_ribo_3,Illumina HiSeq 2500,ERR2812420,<NA>,<NA>,SAMEA4939659,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_ribo_3,<NA>,E-MTAB-7247:platypus_brain_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758442,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812420/platypus_brain_ribo_3.fastq.gz,4257460295,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812420/platypus_brain_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812420/platypus_brain_ribo_3.fastq.gz,<NA>,6b796e5bc21d90f46d07b3a69630c8d9,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819252,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939660,platypus_brain_rna_1,Illumina HiSeq 2500,ERR2812421,88501433,4513573083,SAMEA4939660,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/001/ERR2812421/ERR2812421.fastq.gz,2366110234,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812421/ERR2812421.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/001/ERR2812421/ERR2812421.fastq.gz,6e19a9478311261736ec129a6a06acf8,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_rna_1,<NA>,E-MTAB-7247:platypus_brain_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758443,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/001/ERR2812421,1767628159,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812421,ftp.sra.ebi.ac.uk/vol1/err/ERR281/001/ERR2812421,11c99975c8b985a7d0b8a8157bc54cef,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812421/platypus_brain_rna_1.fastq.gz,2452947040,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812421/platypus_brain_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812421/platypus_brain_rna_1.fastq.gz,<NA>,a1990be889997e0b23577e06a91221ff,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819253,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939661,platypus_brain_rna_2,Illumina HiSeq 2500,ERR2812422,<NA>,<NA>,SAMEA4939661,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_rna_2,<NA>,E-MTAB-7247:platypus_brain_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758444,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812422/platypus_brain_rna_2.fastq.gz,5327088565,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812422/platypus_brain_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812422/platypus_brain_rna_2.fastq.gz,<NA>,cbf27e93147aa31aac333eb2ba9f4dfb,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819254,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939662,platypus_brain_rna_3,Illumina HiSeq 2500,ERR2812423,<NA>,<NA>,SAMEA4939662,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_brain_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_brain_rna_3,<NA>,E-MTAB-7247:platypus_brain_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758445,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812423/platypus_brain_rna_3.fastq.gz,7644761312,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812423/platypus_brain_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812423/platypus_brain_rna_3.fastq.gz,<NA>,4d8b5c6e7327f146308be7d89897dd6e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819255,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939663,platypus_liver_ribo_1,Illumina HiSeq 2500,ERR2812424,205764142,10493971242,SAMEA4939663,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/004/ERR2812424/ERR2812424.fastq.gz,5592709791,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812424/ERR2812424.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/004/ERR2812424/ERR2812424.fastq.gz,48ab5777e3b1e52db4061f8f1b2f8292,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_ribo_1,<NA>,E-MTAB-7247:platypus_liver_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758446,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/004/ERR2812424,4440992995,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812424,ftp.sra.ebi.ac.uk/vol1/err/ERR281/004/ERR2812424,fe55d6f86e0007fbb4b9d3dad57629e5,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812424/platypus_liver_ribo_1.fastq.gz,5066723498,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812424/platypus_liver_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812424/platypus_liver_ribo_1.fastq.gz,<NA>,48091f56925ac0537f00ae233b1bfe18,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819256,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939664,platypus_liver_ribo_2,Illumina HiSeq 2500,ERR2812425,<NA>,<NA>,SAMEA4939664,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_ribo_2,<NA>,E-MTAB-7247:platypus_liver_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758447,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812425/platypus_liver_ribo_2.fastq.gz,2135339874,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812425/platypus_liver_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812425/platypus_liver_ribo_2.fastq.gz,<NA>,50c0a9e6450a998784be15af5db34b88,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819257,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939665,platypus_liver_ribo_3,Illumina HiSeq 2500,ERR2812426,<NA>,<NA>,SAMEA4939665,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_ribo_3,<NA>,E-MTAB-7247:platypus_liver_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758448,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812426/platypus_liver_ribo_3.fastq.gz,3119876363,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812426/platypus_liver_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812426/platypus_liver_ribo_3.fastq.gz,<NA>,8d8eeb944bca513006dddca529cb4b39,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819258,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939666,platypus_liver_rna_1,Illumina HiSeq 2500,ERR2812427,107403200,5477563200,SAMEA4939666,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/007/ERR2812427/ERR2812427.fastq.gz,3374724561,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812427/ERR2812427.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/007/ERR2812427/ERR2812427.fastq.gz,bb5aeacf16ad61d6c00008ec0727b4d8,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_rna_1,<NA>,E-MTAB-7247:platypus_liver_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758449,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR281/007/ERR2812427,2332096662,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812427,ftp.sra.ebi.ac.uk/vol1/err/ERR281/007/ERR2812427,bc70861424229fb53d13f1da11232310,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812427/platypus_liver_rna_1.fastq.gz,3079745871,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812427/platypus_liver_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812427/platypus_liver_rna_1.fastq.gz,<NA>,5e83c441a8e220b3138fd4433f24fe28,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819259,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939667,platypus_liver_rna_2,Illumina HiSeq 2500,ERR2812428,<NA>,<NA>,SAMEA4939667,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_rna_2,<NA>,E-MTAB-7247:platypus_liver_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758450,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812428/platypus_liver_rna_2.fastq.gz,5658103305,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812428/platypus_liver_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812428/platypus_liver_rna_2.fastq.gz,<NA>,be62685d9f9153b214395b662fdb0274,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819260,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939668,platypus_liver_rna_3,Illumina HiSeq 2500,ERR2812429,<NA>,<NA>,SAMEA4939668,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_liver_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_liver_rna_3,<NA>,E-MTAB-7247:platypus_liver_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758451,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812429/platypus_liver_rna_3.fastq.gz,7854730289,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812429/platypus_liver_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812429/platypus_liver_rna_3.fastq.gz,<NA>,104fd56f3d9b7a83d7d796227d63197a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819261,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939669,platypus_testis_ribo_1,Illumina HiSeq 2500,ERR2812430,<NA>,<NA>,SAMEA4939669,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_ribo_1,<NA>,E-MTAB-7247:platypus_testis_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758452,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812430/platypus_testis_ribo_1.fastq.gz,4655907782,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812430/platypus_testis_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812430/platypus_testis_ribo_1.fastq.gz,<NA>,95265fd7a79045e53403755b728d4e06,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819262,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939670,platypus_testis_ribo_2,Illumina HiSeq 2500,ERR2812431,<NA>,<NA>,SAMEA4939670,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_ribo_2,<NA>,E-MTAB-7247:platypus_testis_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758453,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz,1928065426,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz,<NA>,72a11ea0839c1fc0f1b538c8a9ba6141,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819263,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939671,platypus_testis_ribo_3,Illumina HiSeq 2500,ERR2812432,<NA>,<NA>,SAMEA4939671,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_ribo_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_ribo_3,<NA>,E-MTAB-7247:platypus_testis_ribo_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758454,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz,3217635589,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz,<NA>,95e8e4d249457906497aa6f5827461c1,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819264,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939672,platypus_testis_rna_1,Illumina HiSeq 2500,ERR2812433,<NA>,<NA>,SAMEA4939672,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_rna_1,<NA>,E-MTAB-7247:platypus_testis_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758455,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz,10246659465,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz,<NA>,c4151da64cc42a79909f6011024c8987,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819265,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939673,platypus_testis_rna_2,Illumina HiSeq 2500,ERR2812434,<NA>,<NA>,SAMEA4939673,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_rna_2,<NA>,E-MTAB-7247:platypus_testis_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758456,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz,2294781664,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz,<NA>,6ed13b6ee75b15f2432b05e278d3c2ba,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819266,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9258,Ornithorhynchus anatinus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939674,platypus_testis_rna_3,Illumina HiSeq 2500,ERR2812435,<NA>,<NA>,SAMEA4939674,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:platypus_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,platypus_testis_rna_3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:platypus_testis_rna_3,<NA>,E-MTAB-7247:platypus_testis_rna_3,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758457,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz,3010307584,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz,<NA>,5e675b165b28f1c7d7beadbc00fe37be,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819267,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939675,chicken_liver_ribo_4,Illumina HiSeq 2500,ERR2812436,<NA>,<NA>,SAMEA4939675,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_ribo_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_ribo_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_ribo_4,<NA>,E-MTAB-7247:chicken_liver_ribo_4,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758458,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz,5761719962,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz,<NA>,19ddd1d47cc6f9683457fff690897892,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819268,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939676,chicken_liver_ribo_5,Illumina HiSeq 2500,ERR2812437,<NA>,<NA>,SAMEA4939676,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_ribo_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_ribo_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_ribo_5,<NA>,E-MTAB-7247:chicken_liver_ribo_5,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758459,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz,3322471257,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz,<NA>,b3b70eed5086b227da29876f406bfe36,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819269,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939677,chicken_liver_rna_4,Illumina HiSeq 2500,ERR2812438,<NA>,<NA>,SAMEA4939677,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_rna_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_rna_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_rna_4,<NA>,E-MTAB-7247:chicken_liver_rna_4,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758460,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz,4263275947,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz,<NA>,5f8d62d7bbb891a7428253ac3084e3ea,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819270,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,9031,Gallus gallus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939678,chicken_liver_rna_5,Illumina HiSeq 2500,ERR2812439,<NA>,<NA>,SAMEA4939678,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:chicken_liver_rna_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,chicken_liver_rna_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:chicken_liver_rna_5,<NA>,E-MTAB-7247:chicken_liver_rna_5,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758461,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz,4426260164,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz,<NA>,f9cd02435e377b1b9cd263bbb5aeac7c,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819271,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939679,mouse_liver_ribo_4,Illumina HiSeq 2500,ERR2812440,<NA>,<NA>,SAMEA4939679,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_ribo_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_ribo_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_ribo_4,<NA>,E-MTAB-7247:mouse_liver_ribo_4,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758462,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz,2462737950,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz,<NA>,3656cdc24eb21cc0ee4708fe53e6c65a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819272,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939680,mouse_liver_ribo_5,Illumina HiSeq 2500,ERR2812441,<NA>,<NA>,SAMEA4939680,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_ribo_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_ribo_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_ribo_5,<NA>,E-MTAB-7247:mouse_liver_ribo_5,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758463,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz,2512150870,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz,<NA>,1ee615f1a7eefdc3c11714f3becc73a7,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819273,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939681,mouse_liver_rna_4,Illumina HiSeq 2500,ERR2812442,<NA>,<NA>,SAMEA4939681,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_rna_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_rna_4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_rna_4,<NA>,E-MTAB-7247:mouse_liver_rna_4,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758464,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812442/mouse_liver_rna_4.fastq.gz,3496040011,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812442/mouse_liver_rna_4.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812442/mouse_liver_rna_4.fastq.gz,<NA>,3c883bc8ac33a3bbdb0699bf25a15221,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX2819274,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,other,SAMEA4939682,mouse_liver_rna_5,Illumina HiSeq 2500,ERR2812443,<NA>,<NA>,SAMEA4939682,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7247:mouse_liver_rna_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2018-09-26,2019-10-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,mouse_liver_rna_5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247:mouse_liver_rna_5,<NA>,E-MTAB-7247:mouse_liver_rna_5,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\",<NA>,<NA>,<NA>,<NA>,ERS2758465,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA1612101,fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812443/mouse_liver_rna_5.fastq.gz,3177116233,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812443/mouse_liver_rna_5.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812443/mouse_liver_rna_5.fastq.gz,<NA>,233937b41a7330ec8cc73575c5d45b88,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979492,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147536,RPF_0h_n1,Illumina HiSeq 2500,ERR2976734,14287455,409427591,SAMEA5147536,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_0h_n1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/004/ERR2976734/ERR2976734.fastq.gz,266914431,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/004/ERR2976734/ERR2976734.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/004/ERR2976734/ERR2976734.fastq.gz,ed1603cdf1251eaa34fdf3f4f9afb5f8,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_0h_n1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_0h_n1,<NA>,E-MTAB-7466:RPF_0h_n1,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955282,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/004/ERR2976734,225006609,ftp.sra.ebi.ac.uk/vol1/err/ERR297/004/ERR2976734,ftp.sra.ebi.ac.uk/vol1/err/ERR297/004/ERR2976734,36a0a4ff0a6915d64e6e5a2afaf81d7b,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976734/RPF_0h_n1.fastq.gz,227106974,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976734/RPF_0h_n1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976734/RPF_0h_n1.fastq.gz,<NA>,d8f0d5d19541ed47f9f805bf60d1714c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979493,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147537,RPF_0h_n2,Illumina HiSeq 2500,ERR2976735,5520862,154466485,SAMEA5147537,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_0h_n2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/005/ERR2976735/ERR2976735.fastq.gz,109024126,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/005/ERR2976735/ERR2976735.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/005/ERR2976735/ERR2976735.fastq.gz,2678a4bdfc86d0339b7107d142c4109a,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_0h_n2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_0h_n2,<NA>,E-MTAB-7466:RPF_0h_n2,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955283,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/005/ERR2976735,87408702,ftp.sra.ebi.ac.uk/vol1/err/ERR297/005/ERR2976735,ftp.sra.ebi.ac.uk/vol1/err/ERR297/005/ERR2976735,bd9dba62888d39e6cf1984428d09eb73,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976735/RPF_0h_n2.fastq.gz,94502160,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976735/RPF_0h_n2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976735/RPF_0h_n2.fastq.gz,<NA>,090b87af826fa744b20325f1a85e5d81,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979494,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147538,RPF_0h_n3,Illumina HiSeq 2500,ERR2976736,5499258,155393274,SAMEA5147538,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_0h_n3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/006/ERR2976736/ERR2976736.fastq.gz,110234549,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/006/ERR2976736/ERR2976736.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/006/ERR2976736/ERR2976736.fastq.gz,9667461a04a30bc24f36813399e3dac3,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_0h_n3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_0h_n3,<NA>,E-MTAB-7466:RPF_0h_n3,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955284,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/006/ERR2976736,87269375,ftp.sra.ebi.ac.uk/vol1/err/ERR297/006/ERR2976736,ftp.sra.ebi.ac.uk/vol1/err/ERR297/006/ERR2976736,476049718802fa5750ec972dccf000de,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976736/RPF_0h_n3.fastq.gz,95576841,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976736/RPF_0h_n3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976736/RPF_0h_n3.fastq.gz,<NA>,2260eaca53b589deac15fba8c8a63429,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979495,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147539,RPF_3h_n1,Illumina HiSeq 2500,ERR2976737,13926097,391986840,SAMEA5147539,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_3h_n1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/007/ERR2976737/ERR2976737.fastq.gz,264938277,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/007/ERR2976737/ERR2976737.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/007/ERR2976737/ERR2976737.fastq.gz,9968645e1d9df88aaeadc099e6f5b58d,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_3h_n1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_3h_n1,<NA>,E-MTAB-7466:RPF_3h_n1,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955285,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/007/ERR2976737,218431258,ftp.sra.ebi.ac.uk/vol1/err/ERR297/007/ERR2976737,ftp.sra.ebi.ac.uk/vol1/err/ERR297/007/ERR2976737,4cac7a03ef5252be2e65dfea9200610a,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976737/RPF_3h_n1.fastq.gz,226276750,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976737/RPF_3h_n1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976737/RPF_3h_n1.fastq.gz,<NA>,f95923e83ab94f2f309948b01e2fd075,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979496,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147540,RPF_3h_n2,Illumina HiSeq 2500,ERR2976738,14126686,422171925,SAMEA5147540,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_3h_n2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/008/ERR2976738/ERR2976738.fastq.gz,265446222,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/008/ERR2976738/ERR2976738.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/008/ERR2976738/ERR2976738.fastq.gz,0f624c13506be6a6243ba69091c36060,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_3h_n2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_3h_n2,<NA>,E-MTAB-7466:RPF_3h_n2,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955286,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/008/ERR2976738,230517836,ftp.sra.ebi.ac.uk/vol1/err/ERR297/008/ERR2976738,ftp.sra.ebi.ac.uk/vol1/err/ERR297/008/ERR2976738,44596535331cac109b699fc2f8131517,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976738/RPF_3h_n2.fastq.gz,225977413,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976738/RPF_3h_n2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976738/RPF_3h_n2.fastq.gz,<NA>,9b8c3b575642b61ccf2daa313354ed22,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979497,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147541,RPF_3h_n3,Illumina HiSeq 2500,ERR2976739,14499877,434534946,SAMEA5147541,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:RPF_3h_n3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/009/ERR2976739/ERR2976739.fastq.gz,269885153,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/009/ERR2976739/ERR2976739.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/009/ERR2976739/ERR2976739.fastq.gz,0d3cba5807161dbcabdbe335467552ff,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,RPF_3h_n3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:RPF_3h_n3,<NA>,E-MTAB-7466:RPF_3h_n3,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955287,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/009/ERR2976739,235881157,ftp.sra.ebi.ac.uk/vol1/err/ERR297/009/ERR2976739,ftp.sra.ebi.ac.uk/vol1/err/ERR297/009/ERR2976739,062d9d8eba1f1b2346d2b61b7896655b,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976739/RPF_3h_n3.fastq.gz,229693082,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976739/RPF_3h_n3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976739/RPF_3h_n3.fastq.gz,<NA>,9959e9903d9c8f7343e93be2e3ebb910,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979498,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147542,TotalRNA_0h_n1,Illumina HiSeq 2500,ERR2976740,27907935,866451536,SAMEA5147542,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_0h_n1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/000/ERR2976740/ERR2976740.fastq.gz,603637696,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/000/ERR2976740/ERR2976740.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/000/ERR2976740/ERR2976740.fastq.gz,e04c54edd910eb25d9340962eeb176ab,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_0h_n1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_0h_n1,<NA>,E-MTAB-7466:TotalRNA_0h_n1,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955288,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/000/ERR2976740,463138194,ftp.sra.ebi.ac.uk/vol1/err/ERR297/000/ERR2976740,ftp.sra.ebi.ac.uk/vol1/err/ERR297/000/ERR2976740,f91868392f85d2eaf50ee22cfe3f8b65,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976740/TotalRNA_0h_n1.fastq.gz,522843256,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976740/TotalRNA_0h_n1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976740/TotalRNA_0h_n1.fastq.gz,<NA>,c3f58c9a99fbcb80ddbb76c86fe42f34,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979499,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147543,TotalRNA_0h_n2,Illumina HiSeq 2500,ERR2976741,13444837,351478756,SAMEA5147543,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_0h_n2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/001/ERR2976741/ERR2976741.fastq.gz,283233368,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/001/ERR2976741/ERR2976741.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/001/ERR2976741/ERR2976741.fastq.gz,cb5e690ff9fb83270927669302115da7,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_0h_n2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_0h_n2,<NA>,E-MTAB-7466:TotalRNA_0h_n2,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955289,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/001/ERR2976741,202744367,ftp.sra.ebi.ac.uk/vol1/err/ERR297/001/ERR2976741,ftp.sra.ebi.ac.uk/vol1/err/ERR297/001/ERR2976741,59c933f0bf9e904aebc3033e990ad432,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976741/TotalRNA_0h_n2.fastq.gz,245234764,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976741/TotalRNA_0h_n2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976741/TotalRNA_0h_n2.fastq.gz,<NA>,09f3b352b952faeade2c3a02dc1e3337,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979500,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147544,TotalRNA_0h_n3,Illumina HiSeq 2500,ERR2976742,23418108,620300138,SAMEA5147544,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_0h_n3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/002/ERR2976742/ERR2976742.fastq.gz,493519289,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/002/ERR2976742/ERR2976742.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/002/ERR2976742/ERR2976742.fastq.gz,f05968b2b9a77dfb269a89bcb3695223,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_0h_n3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_0h_n3,<NA>,E-MTAB-7466:TotalRNA_0h_n3,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955290,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/002/ERR2976742,353346819,ftp.sra.ebi.ac.uk/vol1/err/ERR297/002/ERR2976742,ftp.sra.ebi.ac.uk/vol1/err/ERR297/002/ERR2976742,1dada41f0e6782c7b9be882127704838,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976742/TotalRNA_0h_n3.fastq.gz,426489386,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976742/TotalRNA_0h_n3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976742/TotalRNA_0h_n3.fastq.gz,<NA>,6edfd0110dda757f045000a2d766e8e3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979501,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147545,TotalRNA_3h_n1,Illumina HiSeq 2500,ERR2976743,3499361,112009663,SAMEA5147545,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_3h_n1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/003/ERR2976743/ERR2976743.fastq.gz,77730473,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/003/ERR2976743/ERR2976743.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/003/ERR2976743/ERR2976743.fastq.gz,a7c07068f6a4a768d471fe723186c898,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_3h_n1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_3h_n1,<NA>,E-MTAB-7466:TotalRNA_3h_n1,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955291,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/003/ERR2976743,60697620,ftp.sra.ebi.ac.uk/vol1/err/ERR297/003/ERR2976743,ftp.sra.ebi.ac.uk/vol1/err/ERR297/003/ERR2976743,1566006c2edf05fd8d2f4144d85637e8,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976743/TotalRNA_3h_n1.fastq.gz,68683354,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976743/TotalRNA_3h_n1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976743/TotalRNA_3h_n1.fastq.gz,<NA>,4b325d104674f8987e0f4773a3f28238,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979502,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147546,TotalRNA_3h_n2,Illumina HiSeq 2500,ERR2976744,11299566,305079262,SAMEA5147546,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_3h_n2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/004/ERR2976744/ERR2976744.fastq.gz,246566152,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/004/ERR2976744/ERR2976744.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/004/ERR2976744/ERR2976744.fastq.gz,35d8ae71bab85894f19e13ea11600339,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_3h_n2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_3h_n2,<NA>,E-MTAB-7466:TotalRNA_3h_n2,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955292,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/004/ERR2976744,174339301,ftp.sra.ebi.ac.uk/vol1/err/ERR297/004/ERR2976744,ftp.sra.ebi.ac.uk/vol1/err/ERR297/004/ERR2976744,d1297b6b4e2b685fd2ffd87c9f75aa6a,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976744/TotalRNA_3h_n2.fastq.gz,214287620,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976744/TotalRNA_3h_n2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976744/TotalRNA_3h_n2.fastq.gz,<NA>,c866104891bffa5b2af2712132c9da8d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB30076,ERX2979503,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,Illumina HiSeq 2500 sequencing; Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA5147547,TotalRNA_3h_n3,Illumina HiSeq 2500,ERR2976745,7169019,210001916,SAMEA5147547,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,SW1353,fibroblast,University of Liverpool,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7466:TotalRNA_3h_n3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR297/005/ERR2976745/ERR2976745.fastq.gz,163221752,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/005/ERR2976745/ERR2976745.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR297/005/ERR2976745/ERR2976745.fastq.gz,bfd0036c465d7a5be1eaf2284d321638,2018-12-04,2019-07-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-04,<NA>,SINGLE,TotalRNA_3h_n3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7466:TotalRNA_3h_n3,<NA>,E-MTAB-7466:TotalRNA_3h_n3,<NA>,\"Protocols: The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco’s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 µg /ml amphotericin B (Gibco, 15290018), cultured at 37 °C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1β (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). Cells were scraped...\",<NA>,<NA>,<NA>,<NA>,ERS2955293,ERP112487,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR297/005/ERR2976745,117485015,ftp.sra.ebi.ac.uk/vol1/err/ERR297/005/ERR2976745,ftp.sra.ebi.ac.uk/vol1/err/ERR297/005/ERR2976745,22daef085064155071e8d3320aab062f,<NA>,E-MTAB-7466,Ribosome profiling of chondrocytic cell line SW1353 following exposure to IL-1B,<NA>,<NA>,ERA1674180,fasp.sra.ebi.ac.uk:/vol1/run/ERR297/ERR2976745/TotalRNA_3h_n3.fastq.gz,144015288,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976745/TotalRNA_3h_n3.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR297/ERR2976745/TotalRNA_3h_n3.fastq.gz,<NA>,126527634c7cb3d3fc34363ac311d06d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245944,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417311,new1_KO_20C_riboseq_S6,Illumina HiSeq 2500,ERR3218426,42524298,2168739198,SAMEA5417311,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_20C_riboseq_S6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3218426/ERR3218426.fastq.gz,1661170953,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3218426/ERR3218426.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3218426/ERR3218426.fastq.gz,cdfe1bc5ed2086f5b3e54c42b132b9fb,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_20C_riboseq_S6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_20C_riboseq_S6,<NA>,E-MTAB-7763:new1_KO_20C_riboseq_S6,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222609,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/006/ERR3218426,1269739590,ftp.sra.ebi.ac.uk/vol1/err/ERR321/006/ERR3218426,ftp.sra.ebi.ac.uk/vol1/err/ERR321/006/ERR3218426,77b5be2a233d5255fe41df8626b1d3ef,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218426/S6_KO_20C_riboseq_rep1.fastq.gz,1594935852,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218426/S6_KO_20C_riboseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218426/S6_KO_20C_riboseq_rep1.fastq.gz,<NA>,07511d2002e856cedc08de6c035b03ca,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245945,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417312,new1_KO_20C_riboseq_S8,Illumina HiSeq 2500,ERR3218427,47049069,2399502519,SAMEA5417312,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_20C_riboseq_S8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3218427/ERR3218427.fastq.gz,1811763485,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3218427/ERR3218427.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3218427/ERR3218427.fastq.gz,0bca4510075b5f266319aea32c5b628c,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_20C_riboseq_S8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_20C_riboseq_S8,<NA>,E-MTAB-7763:new1_KO_20C_riboseq_S8,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222610,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/007/ERR3218427,1399689280,ftp.sra.ebi.ac.uk/vol1/err/ERR321/007/ERR3218427,ftp.sra.ebi.ac.uk/vol1/err/ERR321/007/ERR3218427,e3cb609b98305db6d776fe4d114a0e83,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218427/S8_KO_20C_riboseq_rep2.fastq.gz,1740669764,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218427/S8_KO_20C_riboseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218427/S8_KO_20C_riboseq_rep2.fastq.gz,<NA>,30a1402b2ee16709ad65c5d9a94b56f8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245946,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417313,new1_KO_20C_rnaseq_S26,Illumina HiSeq 2500,ERR3218428,19253626,981934926,SAMEA5417313,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_20C_rnaseq_S26_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3218428/ERR3218428.fastq.gz,751060693,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3218428/ERR3218428.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3218428/ERR3218428.fastq.gz,2594b0dc350704edd79f6a66fe2f3baa,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_20C_rnaseq_S26_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_20C_rnaseq_S26,<NA>,E-MTAB-7763:new1_KO_20C_rnaseq_S26,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222611,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/008/ERR3218428,484632517,ftp.sra.ebi.ac.uk/vol1/err/ERR321/008/ERR3218428,ftp.sra.ebi.ac.uk/vol1/err/ERR321/008/ERR3218428,f2dab142579d0f9f79f34f8b73829b71,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218428/S26_KO_20C_rnaseq_rep1.fastq.gz,718841591,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218428/S26_KO_20C_rnaseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218428/S26_KO_20C_rnaseq_rep1.fastq.gz,<NA>,a4225054c195a33f691d89b913439bf1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245947,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417314,new1_KO_20C_rnaseq_S28,Illumina HiSeq 2500,ERR3218429,17912055,913514805,SAMEA5417314,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_20C_rnaseq_S28_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3218429/ERR3218429.fastq.gz,681146466,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3218429/ERR3218429.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3218429/ERR3218429.fastq.gz,95dd21b754f98ebfc2075cbf91989a4c,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_20C_rnaseq_S28_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_20C_rnaseq_S28,<NA>,E-MTAB-7763:new1_KO_20C_rnaseq_S28,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222612,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/009/ERR3218429,446688542,ftp.sra.ebi.ac.uk/vol1/err/ERR321/009/ERR3218429,ftp.sra.ebi.ac.uk/vol1/err/ERR321/009/ERR3218429,982985cbdcecbc684098b6fb7fd6f340,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218429/S28_KO_20C_rnaseq_rep2.fastq.gz,650976447,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218429/S28_KO_20C_rnaseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218429/S28_KO_20C_rnaseq_rep2.fastq.gz,<NA>,410c14e5dd19ef0384f249090ee81274,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245948,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417315,new1_KO_30C_riboseq_S2,Illumina HiSeq 2500,ERR3218430,41003606,2091183906,SAMEA5417315,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_30C_riboseq_S2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3218430/ERR3218430.fastq.gz,1523003576,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3218430/ERR3218430.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3218430/ERR3218430.fastq.gz,9d60bed088eff9ce8b94fa6def70a38b,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_30C_riboseq_S2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_30C_riboseq_S2,<NA>,E-MTAB-7763:new1_KO_30C_riboseq_S2,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222613,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/000/ERR3218430,1217943974,ftp.sra.ebi.ac.uk/vol1/err/ERR321/000/ERR3218430,ftp.sra.ebi.ac.uk/vol1/err/ERR321/000/ERR3218430,ef7142364164356d50deb816bde21513,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218430/S2_KO_30C_riboseq_rep1.fastq.gz,1458550491,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218430/S2_KO_30C_riboseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218430/S2_KO_30C_riboseq_rep1.fastq.gz,<NA>,5bd2c52a0060016e35f41b7fe617c518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245949,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417316,new1_KO_30C_riboseq_S4,Illumina HiSeq 2500,ERR3218431,46314080,2362018080,SAMEA5417316,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_30C_riboseq_S4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3218431/ERR3218431.fastq.gz,1728597049,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3218431/ERR3218431.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3218431/ERR3218431.fastq.gz,9162ca6c82f0af4e99e7082b2301e8c6,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_30C_riboseq_S4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_30C_riboseq_S4,<NA>,E-MTAB-7763:new1_KO_30C_riboseq_S4,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222614,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/001/ERR3218431,1379123840,ftp.sra.ebi.ac.uk/vol1/err/ERR321/001/ERR3218431,ftp.sra.ebi.ac.uk/vol1/err/ERR321/001/ERR3218431,dda20ec80b832b9b46acda67c3b26412,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218431/S4_KO_30C_riboseq_rep2.fastq.gz,1657045908,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218431/S4_KO_30C_riboseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218431/S4_KO_30C_riboseq_rep2.fastq.gz,<NA>,ac5e211164484987accd829010d793d6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245950,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417317,new1_KO_30C_rnaseq_S22,Illumina HiSeq 2500,ERR3218432,16606183,846915333,SAMEA5417317,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_30C_rnaseq_S22_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/002/ERR3218432/ERR3218432.fastq.gz,633778853,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3218432/ERR3218432.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/002/ERR3218432/ERR3218432.fastq.gz,af78cf6725801926426202cf562ff289,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_30C_rnaseq_S22_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_30C_rnaseq_S22,<NA>,E-MTAB-7763:new1_KO_30C_rnaseq_S22,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222615,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/002/ERR3218432,415302301,ftp.sra.ebi.ac.uk/vol1/err/ERR321/002/ERR3218432,ftp.sra.ebi.ac.uk/vol1/err/ERR321/002/ERR3218432,26f614671bd8cd8587572fa92587257d,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218432/S22_KO_30C_rnaseq_rep1.fastq.gz,606683390,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218432/S22_KO_30C_rnaseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218432/S22_KO_30C_rnaseq_rep1.fastq.gz,<NA>,bf6d25f3b4c584502c1447536b86f49c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245951,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417318,new1_KO_30C_rnaseq_S24,Illumina HiSeq 2500,ERR3218433,20180603,1029210753,SAMEA5417318,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:new1_KO_30C_rnaseq_S24_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/003/ERR3218433/ERR3218433.fastq.gz,776636341,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3218433/ERR3218433.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/003/ERR3218433/ERR3218433.fastq.gz,836a9bf3c4a0905bcd9b542b55481bba,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,new1_KO_30C_rnaseq_S24_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:new1_KO_30C_rnaseq_S24,<NA>,E-MTAB-7763:new1_KO_30C_rnaseq_S24,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222616,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/003/ERR3218433,505203328,ftp.sra.ebi.ac.uk/vol1/err/ERR321/003/ERR3218433,ftp.sra.ebi.ac.uk/vol1/err/ERR321/003/ERR3218433,b691825bedfb2d8b7cc5a81245157ad6,BY derivative  MJY1173,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218433/S24_KO_30C_rnaseq_rep2.fastq.gz,742669038,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218433/S24_KO_30C_rnaseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218433/S24_KO_30C_rnaseq_rep2.fastq.gz,<NA>,739de4ad0d1c0af778768003e8875966,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245952,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417319,WT_20C_riboseq_S5,Illumina HiSeq 2500,ERR3218434,36716398,1872536298,SAMEA5417319,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_20C_riboseq_S5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/004/ERR3218434/ERR3218434.fastq.gz,1440948536,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/004/ERR3218434/ERR3218434.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/004/ERR3218434/ERR3218434.fastq.gz,f9ae6eb79565f26ddae295cbcb29b6e4,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_20C_riboseq_S5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_20C_riboseq_S5,<NA>,E-MTAB-7763:WT_20C_riboseq_S5,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222617,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/004/ERR3218434,1097185293,ftp.sra.ebi.ac.uk/vol1/err/ERR321/004/ERR3218434,ftp.sra.ebi.ac.uk/vol1/err/ERR321/004/ERR3218434,a59eb16325ace33cad7164e433037587,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218434/S5_WT_20C_riboseq_rep1.fastq.gz,1383439382,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218434/S5_WT_20C_riboseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218434/S5_WT_20C_riboseq_rep1.fastq.gz,<NA>,c4cdab3122d9d9cff4b15acff8ce6aaa,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245953,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417320,WT_20C_riboseq_S7,Illumina HiSeq 2500,ERR3218435,39097639,1993979589,SAMEA5417320,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_20C_riboseq_S7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/005/ERR3218435/ERR3218435.fastq.gz,1470212104,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3218435/ERR3218435.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/005/ERR3218435/ERR3218435.fastq.gz,5f7ff9ace50cfef9493a24b0b4d2c222,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_20C_riboseq_S7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_20C_riboseq_S7,<NA>,E-MTAB-7763:WT_20C_riboseq_S7,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222618,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/005/ERR3218435,1168439094,ftp.sra.ebi.ac.uk/vol1/err/ERR321/005/ERR3218435,ftp.sra.ebi.ac.uk/vol1/err/ERR321/005/ERR3218435,48eba8d5b19464539ec961045502431a,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218435/S7_WT_20C_riboseq_rep2.fastq.gz,1410456848,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218435/S7_WT_20C_riboseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218435/S7_WT_20C_riboseq_rep2.fastq.gz,<NA>,6961c91c93baf092c18943d77e900ca3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245954,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417321,WT_20C_rnaseq_S25,Illumina HiSeq 2500,ERR3218436,20712520,1056338520,SAMEA5417321,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_20C_rnaseq_S25_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/006/ERR3218436/ERR3218436.fastq.gz,775942279,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3218436/ERR3218436.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/006/ERR3218436/ERR3218436.fastq.gz,5563dd7877a6300af95bbcb38844de9c,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_20C_rnaseq_S25_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_20C_rnaseq_S25,<NA>,E-MTAB-7763:WT_20C_rnaseq_S25,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222619,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/006/ERR3218436,518280156,ftp.sra.ebi.ac.uk/vol1/err/ERR321/006/ERR3218436,ftp.sra.ebi.ac.uk/vol1/err/ERR321/006/ERR3218436,f7d0a580294c08f7cb3689a92bc616e4,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218436/S25_WT_20C_rnaseq_rep1.fastq.gz,745066443,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218436/S25_WT_20C_rnaseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218436/S25_WT_20C_rnaseq_rep1.fastq.gz,<NA>,cfb0e429dcff286f2e34c3d5554210e7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245955,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417322,WT_20C_rnaseq_S27,Illumina HiSeq 2500,ERR3218437,17927270,914290770,SAMEA5417322,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_20C_rnaseq_S27_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/007/ERR3218437/ERR3218437.fastq.gz,697057326,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3218437/ERR3218437.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/007/ERR3218437/ERR3218437.fastq.gz,382296ba2635d086170fab7fca918478,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_20C_rnaseq_S27_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_20C_rnaseq_S27,<NA>,E-MTAB-7763:WT_20C_rnaseq_S27,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222620,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/007/ERR3218437,449330721,ftp.sra.ebi.ac.uk/vol1/err/ERR321/007/ERR3218437,ftp.sra.ebi.ac.uk/vol1/err/ERR321/007/ERR3218437,6c48b86cd6941012e850a872ede9cd88,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218437/S27_WT_20C_rnaseq_rep2.fastq.gz,666658472,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218437/S27_WT_20C_rnaseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218437/S27_WT_20C_rnaseq_rep2.fastq.gz,<NA>,74b28572c5b152f8c2aad25ddf2ed87a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245956,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417323,WT_30C_riboseq_S1,Illumina HiSeq 2500,ERR3218438,42073144,2145730344,SAMEA5417323,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_30C_riboseq_S1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/008/ERR3218438/ERR3218438.fastq.gz,1609885971,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3218438/ERR3218438.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/008/ERR3218438/ERR3218438.fastq.gz,4f55459d88e53d599f7abba01515e53a,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_30C_riboseq_S1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_30C_riboseq_S1,<NA>,E-MTAB-7763:WT_30C_riboseq_S1,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222621,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/008/ERR3218438,1259466886,ftp.sra.ebi.ac.uk/vol1/err/ERR321/008/ERR3218438,ftp.sra.ebi.ac.uk/vol1/err/ERR321/008/ERR3218438,046735390023f842328355f4a10633d6,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218438/S1_WT_30C_riboseq_rep1.fastq.gz,1543309286,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218438/S1_WT_30C_riboseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218438/S1_WT_30C_riboseq_rep1.fastq.gz,<NA>,cad4ce709667c88c8b8d4c72bbd1781d,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245957,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMEA5417324,WT_30C_riboseq_S3,Illumina HiSeq 2500,ERR3218439,44105472,2249379072,SAMEA5417324,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_30C_riboseq_S3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/009/ERR3218439/ERR3218439.fastq.gz,1707313854,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3218439/ERR3218439.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/009/ERR3218439/ERR3218439.fastq.gz,eab81e9b39ba6e9b1f8a6f4128d35ea6,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_30C_riboseq_S3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_30C_riboseq_S3,<NA>,E-MTAB-7763:WT_30C_riboseq_S3,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222622,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/009/ERR3218439,1324941976,ftp.sra.ebi.ac.uk/vol1/err/ERR321/009/ERR3218439,ftp.sra.ebi.ac.uk/vol1/err/ERR321/009/ERR3218439,cea01af5724a256e763e1520ebf6703d,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218439/S3_WT_30C_riboseq_rep2.fastq.gz,1637749527,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218439/S3_WT_30C_riboseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218439/S3_WT_30C_riboseq_rep2.fastq.gz,<NA>,bf1c5b40e0e2390f5226a7e919475d5c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245958,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417325,WT_30C_rnaseq_S21,Illumina HiSeq 2500,ERR3218440,32260678,1645294578,SAMEA5417325,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_30C_rnaseq_S21_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/000/ERR3218440/ERR3218440.fastq.gz,1264745818,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3218440/ERR3218440.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/000/ERR3218440/ERR3218440.fastq.gz,7e48a3ce5eca5b28e8db6ec786d94d22,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_30C_rnaseq_S21_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_30C_rnaseq_S21,<NA>,E-MTAB-7763:WT_30C_rnaseq_S21,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222623,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/000/ERR3218440,828471982,ftp.sra.ebi.ac.uk/vol1/err/ERR321/000/ERR3218440,ftp.sra.ebi.ac.uk/vol1/err/ERR321/000/ERR3218440,c4daa78f2e7c8d3598c5a12616c24d91,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218440/S21_WT_30C_rnaseq_rep1.fastq.gz,1212731339,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218440/S21_WT_30C_rnaseq_rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218440/S21_WT_30C_rnaseq_rep1.fastq.gz,<NA>,f98ec2a036dcdb34d5ade627706d94eb,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB31666,ERX3245959,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMEA5417326,WT_30C_rnaseq_S23,Illumina HiSeq 2500,ERR3218441,28075810,1431866310,SAMEA5417326,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,postdoc,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7763:WT_30C_rnaseq_S23_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR321/001/ERR3218441/ERR3218441.fastq.gz,1118309498,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3218441/ERR3218441.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR321/001/ERR3218441/ERR3218441.fastq.gz,0e30d37f871f2c9f5200a97b9ea435bf,2019-03-12,2019-05-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-13,<NA>,SINGLE,WT_30C_rnaseq_S23_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7763:WT_30C_rnaseq_S23,<NA>,E-MTAB-7763:WT_30C_rnaseq_S23,<NA>,\"Protocols: Cells were collected by rapid vacuum filtration, promptly flash-frozen in liquid nitrogen and lysed by cryogenic milling. Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\",<NA>,<NA>,<NA>,<NA>,ERS3222624,ERP114248,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR321/001/ERR3218441,733439365,ftp.sra.ebi.ac.uk/vol1/err/ERR321/001/ERR3218441,ftp.sra.ebi.ac.uk/vol1/err/ERR321/001/ERR3218441,9a500060e6d75544dc972e2cc0af3d49,BY derivative  MJY1171,E-MTAB-7763,Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. The cultures were grown either at 20°C or 30°C.,<NA>,<NA>,ERA1762847,fasp.sra.ebi.ac.uk:/vol1/run/ERR321/ERR3218441/S23_WT_30C_rnaseq_rep2.fastq.gz,1072783449,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218441/S23_WT_30C_rnaseq_rep2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR321/ERR3218441/S23_WT_30C_rnaseq_rep2.fastq.gz,<NA>,5515eaf2ae65d2ce31904b10e8961bed,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303389,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563290,Sample 10,NextSeq 500,ERR3276516,55053803,2331547026,SAMEA5563290,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 10_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/006/ERR3276516/ERR3276516.fastq.gz,1370728565,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/006/ERR3276516/ERR3276516.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/006/ERR3276516/ERR3276516.fastq.gz,609421a9c7d7dd110d3e07384807d1d8,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 10_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 10,<NA>,E-MTAB-7849:Sample 10,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365320,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/006/ERR3276516,1087976688,ftp.sra.ebi.ac.uk/vol1/err/ERR327/006/ERR3276516,ftp.sra.ebi.ac.uk/vol1/err/ERR327/006/ERR3276516,5f8ec9284c4077f7c5d216f5f259efce,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276516/Sample_10.fq.gz,1233610279,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276516/Sample_10.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276516/Sample_10.fq.gz,<NA>,0577cbd485851725fbd2f99805a1c2a3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303390,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563291,Sample 5,NextSeq 500,ERR3276517,26947157,1513258341,SAMEA5563291,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 5_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz,808555912,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz,d6131018834f4ac5f548c159d94d23d7,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 5_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 5,<NA>,E-MTAB-7849:Sample 5,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365321,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/007/ERR3276517,623582515,ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276517,ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276517,0bb0489cf8727178f0b2a0d84f304716,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz,737268093,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz,<NA>,bd38ca0a8836faa2624222ba3aa9d0f8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303391,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563292,Sample 6,NextSeq 500,ERR3276518,55020617,2287339126,SAMEA5563292,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 6_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz,1416002323,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz,a37ecf2108559e267641c01fa81ac887,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 6_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 6,<NA>,E-MTAB-7849:Sample 6,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365322,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/008/ERR3276518,1085008214,ftp.sra.ebi.ac.uk/vol1/err/ERR327/008/ERR3276518,ftp.sra.ebi.ac.uk/vol1/err/ERR327/008/ERR3276518,a446e97b4ffa603abf7dbb26a110fafe,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz,1277954673,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz,<NA>,2d5410adf3c918b15dfc031303f8c680,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303392,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563293,Sample 9,NextSeq 500,ERR3276519,26710399,1628290372,SAMEA5563293,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 9_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/009/ERR3276519/ERR3276519.fastq.gz,840731547,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/009/ERR3276519/ERR3276519.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/009/ERR3276519/ERR3276519.fastq.gz,59e286157d84f579de96a7d8051f975e,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 9_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 9,<NA>,E-MTAB-7849:Sample 9,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365323,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/009/ERR3276519,648351012,ftp.sra.ebi.ac.uk/vol1/err/ERR327/009/ERR3276519,ftp.sra.ebi.ac.uk/vol1/err/ERR327/009/ERR3276519,273dc73bb3b056a17868260de5686c17,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276519/Sample_9.fq.gz,770154822,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276519/Sample_9.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276519/Sample_9.fq.gz,<NA>,0ec767f6028b1cc70d9447b6e6c58ab6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303393,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563294,Sample 1,NextSeq 500,ERR3276520,24759896,1470848970,SAMEA5563294,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/000/ERR3276520/ERR3276520.fastq.gz,761301644,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/000/ERR3276520/ERR3276520.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/000/ERR3276520/ERR3276520.fastq.gz,fd67c3301225269201c9f2a06d12558c,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 1,<NA>,E-MTAB-7849:Sample 1,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365324,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/000/ERR3276520,597885656,ftp.sra.ebi.ac.uk/vol1/err/ERR327/000/ERR3276520,ftp.sra.ebi.ac.uk/vol1/err/ERR327/000/ERR3276520,ff3c7e3ef8ccd3c0aff0640e5f6a0954,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276520/Sample_1.fq.gz,696010833,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276520/Sample_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276520/Sample_1.fq.gz,<NA>,210affb6061c2db5f72d4e512f16ff90,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303394,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563295,Sample 11,NextSeq 500,ERR3276521,40743255,720199228,SAMEA5563295,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 11_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/001/ERR3276521/ERR3276521.fastq.gz,730604854,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/001/ERR3276521/ERR3276521.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/001/ERR3276521/ERR3276521.fastq.gz,97ba3d1a98586cf77668d0b060b5037d,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 11_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 11,<NA>,E-MTAB-7849:Sample 11,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365325,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/001/ERR3276521,442419877,ftp.sra.ebi.ac.uk/vol1/err/ERR327/001/ERR3276521,ftp.sra.ebi.ac.uk/vol1/err/ERR327/001/ERR3276521,ecee39e32b1b4b84674694c6c321ed88,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276521/Sample_11.fq.gz,629560992,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276521/Sample_11.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276521/Sample_11.fq.gz,<NA>,189feb1f8891c5c3f6040d4013418c66,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303395,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563296,Sample 12,NextSeq 500,ERR3276522,51225481,2179088593,SAMEA5563296,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 12_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/002/ERR3276522/ERR3276522.fastq.gz,1207820109,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/002/ERR3276522/ERR3276522.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/002/ERR3276522/ERR3276522.fastq.gz,b0b6da6673edc8178fe325001c994f3b,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 12_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 12,<NA>,E-MTAB-7849:Sample 12,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365326,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/002/ERR3276522,972750633,ftp.sra.ebi.ac.uk/vol1/err/ERR327/002/ERR3276522,ftp.sra.ebi.ac.uk/vol1/err/ERR327/002/ERR3276522,f803144f2645e6ba030a154269b1303b,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276522/Sample_12.fq.gz,1079418790,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276522/Sample_12.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276522/Sample_12.fq.gz,<NA>,d1b6235d06a9b08dd38ce16ca6335b5e,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303396,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563297,Sample 2,NextSeq 500,ERR3276523,46244710,1870162578,SAMEA5563297,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/003/ERR3276523/ERR3276523.fastq.gz,1214604899,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/003/ERR3276523/ERR3276523.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/003/ERR3276523/ERR3276523.fastq.gz,7abdee931c53375827da435dee23c032,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 2,<NA>,E-MTAB-7849:Sample 2,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365327,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/003/ERR3276523,906593680,ftp.sra.ebi.ac.uk/vol1/err/ERR327/003/ERR3276523,ftp.sra.ebi.ac.uk/vol1/err/ERR327/003/ERR3276523,e1b2a5fa6bfc25a049b6c62b176969d8,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276523/Sample_2.fq.gz,1099115386,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276523/Sample_2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276523/Sample_2.fq.gz,<NA>,706d72c1498e34a9ca6d57d039382a42,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303397,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563298,Sample 3,NextSeq 500,ERR3276524,24691642,1389875907,SAMEA5563298,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/004/ERR3276524/ERR3276524.fastq.gz,723840735,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/004/ERR3276524/ERR3276524.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/004/ERR3276524/ERR3276524.fastq.gz,bd92ff1043d39ae1918166e2735438d9,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 3,<NA>,E-MTAB-7849:Sample 3,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365328,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/004/ERR3276524,568050663,ftp.sra.ebi.ac.uk/vol1/err/ERR327/004/ERR3276524,ftp.sra.ebi.ac.uk/vol1/err/ERR327/004/ERR3276524,c052aa579c155b69873e598cce3bf15c,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276524/Sample_3.fq.gz,658372729,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276524/Sample_3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276524/Sample_3.fq.gz,<NA>,2739e488851d2e3958ddc62cb13b94c6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303398,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563299,Sample 4,NextSeq 500,ERR3276525,45214219,1852094222,SAMEA5563299,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/005/ERR3276525/ERR3276525.fastq.gz,1154308271,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/005/ERR3276525/ERR3276525.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/005/ERR3276525/ERR3276525.fastq.gz,bedff0fbeed2a7f313027b0b6ab2cde2,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 4,<NA>,E-MTAB-7849:Sample 4,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365329,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/005/ERR3276525,839550474,ftp.sra.ebi.ac.uk/vol1/err/ERR327/005/ERR3276525,ftp.sra.ebi.ac.uk/vol1/err/ERR327/005/ERR3276525,1eed7eaffd7991ac1bb01f9e052c128e,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276525/Sample_4.fq.gz,1039465078,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276525/Sample_4.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276525/Sample_4.fq.gz,<NA>,a7e45ba62f3f01dd8a3001f2de8d2bb1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303399,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563300,Sample 7,NextSeq 500,ERR3276526,25782829,1431543565,SAMEA5563300,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 7_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/006/ERR3276526/ERR3276526.fastq.gz,736777733,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/006/ERR3276526/ERR3276526.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/006/ERR3276526/ERR3276526.fastq.gz,658ef7431c85a7b98303fbf488063964,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 7_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 7,<NA>,E-MTAB-7849:Sample 7,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365330,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/006/ERR3276526,586508600,ftp.sra.ebi.ac.uk/vol1/err/ERR327/006/ERR3276526,ftp.sra.ebi.ac.uk/vol1/err/ERR327/006/ERR3276526,907f47b58c05d5b56140ec59a9ad4674,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276526/Sample_7.fq.gz,668526899,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276526/Sample_7.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276526/Sample_7.fq.gz,<NA>,248e79c78175b6fe9fa49ccf2fa869b4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32121,ERX3303400,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,9031,Gallus gallus,OTHER,TRANSCRIPTOMIC,other,SAMEA5563301,Sample 8,NextSeq 500,ERR3276527,56002673,2257682429,SAMEA5563301,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-7849:Sample 8_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/007/ERR3276527/ERR3276527.fastq.gz,1361256789,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276527/ERR3276527.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276527/ERR3276527.fastq.gz,89a120c34dc3749d834c72253f5b29a6,2019-04-11,2019-06-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-11,<NA>,SINGLE,Sample 8_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7849:Sample 8,<NA>,E-MTAB-7849:Sample 8,<NA>,\"Protocols: Primary chick kidney (CK) cells were produced from 2–3 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1 hour incubation at 37 °C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle’s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20 mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2 mM L-glutamine, 250 U/ml nystatin, 100 U/ml penicillin, and 100 U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 µg/ml) and the cells incubated for 2 min at 37 °C before rinsing with 5 ml of ice-cold PBS containing CHX (100 µg/ml). Subsequently, dishes were incubated on ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 °C, the supernatants recovered and stor...\",<NA>,<NA>,<NA>,<NA>,ERS3365331,ERP114760,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR327/007/ERR3276527,1074144272,ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276527,ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276527,765bac9a230b8e1df61bfdabf0c25d48,<NA>,E-MTAB-7849,Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus,<NA>,<NA>,ERA1826088,fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276527/Sample_8.fq.gz,1222193913,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276527/Sample_8.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276527/Sample_8.fq.gz,<NA>,0b43a80b630168b58fbe256e51200a80,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32969,ERX3390678,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703368,Sample 1,NextSeq 500,ERR3366404,33896631,1214976883,SAMEA5703368,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Caco-2,epithelial cell,UNIVERSITY OF CAMBRIDGE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-8045:Sample 1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz,753125273,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz,63eee81e155f510cc5209ec7a18ccf26,2019-06-10,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-06-10,<NA>,SINGLE,Sample 1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-8045:Sample 1,<NA>,E-MTAB-8045:Sample 1,<NA>,\"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 µM LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 µg/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenmüller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\",<NA>,<NA>,<NA>,<NA>,ERS3507025,ERP115717,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR336/004/ERR3366404,603971685,ftp.sra.ebi.ac.uk/vol1/err/ERR336/004/ERR3366404,ftp.sra.ebi.ac.uk/vol1/err/ERR336/004/ERR3366404,554a78de287cc897bffa44db782a913d,<NA>,E-MTAB-8045,Ribosome profiling of astrovirus-infected cells,<NA>,<NA>,ERA1994565,fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366404/sample_1.fq.gz,667207032,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366404/sample_1.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366404/sample_1.fq.gz,<NA>,039da8a5bbb99b3d33645375dfdfbc6c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32969,ERX3390679,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703369,Sample 2,NextSeq 500,ERR3366405,41162069,1528126888,SAMEA5703369,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Caco-2,epithelial cell,UNIVERSITY OF CAMBRIDGE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-8045:Sample 2_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz,925295454,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz,d8f50b06867b4d7dbbc7382657e9215e,2019-06-10,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-06-10,<NA>,SINGLE,Sample 2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-8045:Sample 2,<NA>,E-MTAB-8045:Sample 2,<NA>,\"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 µM LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 µg/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenmüller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\",<NA>,<NA>,<NA>,<NA>,ERS3507026,ERP115717,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR336/005/ERR3366405,751680236,ftp.sra.ebi.ac.uk/vol1/err/ERR336/005/ERR3366405,ftp.sra.ebi.ac.uk/vol1/err/ERR336/005/ERR3366405,5351b6afdbd5989b22c257d6d71cc6cc,<NA>,E-MTAB-8045,Ribosome profiling of astrovirus-infected cells,<NA>,<NA>,ERA1994565,fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366405/sample_2.fq.gz,820290777,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366405/sample_2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366405/sample_2.fq.gz,<NA>,97cdef85b2cf6e650b1d1cb55228a932,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32969,ERX3390680,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703370,Sample 3,NextSeq 500,ERR3366406,11238470,457167576,SAMEA5703370,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Caco-2,epithelial cell,UNIVERSITY OF CAMBRIDGE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-8045:Sample 3_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz,260893712,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz,7caba38a239b8a2214d09d8272fe0372,2019-06-10,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-06-12,<NA>,SINGLE,Sample 3_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-8045:Sample 3,<NA>,E-MTAB-8045:Sample 3,<NA>,\"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 µM LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 µg/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenmüller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\",<NA>,<NA>,<NA>,<NA>,ERS3507027,ERP115717,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR336/006/ERR3366406,228074816,ftp.sra.ebi.ac.uk/vol1/err/ERR336/006/ERR3366406,ftp.sra.ebi.ac.uk/vol1/err/ERR336/006/ERR3366406,27de7ad0109c5dfc0223e76335406b60,<NA>,E-MTAB-8045,Ribosome profiling of astrovirus-infected cells,<NA>,<NA>,ERA1994565,fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366406/sample_3.fq.gz,232939713,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366406/sample_3.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366406/sample_3.fq.gz,<NA>,b10a49d89dc7e70793e78a1745f98f71,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB32969,ERX3390681,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMEA5703371,Sample 4,NextSeq 500,ERR3366407,12881017,487714175,SAMEA5703371,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Caco-2,epithelial cell,UNIVERSITY OF CAMBRIDGE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-8045:Sample 4_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz,294147175,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz,6db8739aaa260a436f3206f289da20b9,2019-06-10,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-06-10,<NA>,SINGLE,Sample 4_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-8045:Sample 4,<NA>,E-MTAB-8045:Sample 4,<NA>,\"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 µM LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 µg/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenmüller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 µl of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 µg/ml cycloheximide and 25 U/ml TURBO™ DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 ºC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\",<NA>,<NA>,<NA>,<NA>,ERS3507028,ERP115717,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR336/007/ERR3366407,242657462,ftp.sra.ebi.ac.uk/vol1/err/ERR336/007/ERR3366407,ftp.sra.ebi.ac.uk/vol1/err/ERR336/007/ERR3366407,1330cb9e1e0cfe13d3ac037446121137,<NA>,E-MTAB-8045,Ribosome profiling of astrovirus-infected cells,<NA>,<NA>,ERA1994565,fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366407/sample_4.fq.gz,262163422,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366407/sample_4.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366407/sample_4.fq.gz,<NA>,8b5fb045e27e46ee56f4bf2d26c9ca15,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772928,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426174,mouse_elongatingSpermatids_ribo_1,Illumina HiSeq 2500,ERR3771179,<NA>,<NA>,SAMEA6426174,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_elongatingSpermatids_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192382,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz,4945079124,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz,<NA>,207370b81c3ec1afe25e53e6323da16e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772929,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426175,mouse_elongatingSpermatids_ribo_2,Illumina HiSeq 2500,ERR3771180,<NA>,<NA>,SAMEA6426175,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_elongatingSpermatids_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_2,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192383,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771180/mouse_elongatingSpermatids_ribo_2.fastq.gz,2460658420,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771180/mouse_elongatingSpermatids_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771180/mouse_elongatingSpermatids_ribo_2.fastq.gz,<NA>,c275c4a6ea46d75693d884f95c393083,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772930,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426176,mouse_elongatingSpermatids_rna_1,Illumina HiSeq 2500,ERR3771181,<NA>,<NA>,SAMEA6426176,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_elongatingSpermatids_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_1,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192384,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771181/mouse_elongatingSpermatids_rna_1.fastq.gz,1432001562,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771181/mouse_elongatingSpermatids_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771181/mouse_elongatingSpermatids_rna_1.fastq.gz,<NA>,bab4957319a4f6b60ac404553e1ea9f3,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772931,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426177,mouse_elongatingSpermatids_rna_2,Illumina HiSeq 2500,ERR3771182,<NA>,<NA>,SAMEA6426177,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_elongatingSpermatids_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_2,<NA>,E-MTAB-72471576596742:mouse_elongatingSpermatids_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192385,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771182/mouse_elongatingSpermatids_rna_2.fastq.gz,1946601860,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771182/mouse_elongatingSpermatids_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771182/mouse_elongatingSpermatids_rna_2.fastq.gz,<NA>,e17f1bd8da27e8f2a96b7e1a57b8f213,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772932,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426178,mouse_roundSpermatids_ribo_1,Illumina HiSeq 2500,ERR3771183,219656784,22185335184,SAMEA6426178,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/003/ERR3771183/ERR3771183.fastq.gz,7068142945,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3771183/ERR3771183.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3771183/ERR3771183.fastq.gz,d280265f162fb527fd019066d081b4a3,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_roundSpermatids_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_1,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192386,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/003/ERR3771183,7868488048,ftp.sra.ebi.ac.uk/vol1/err/ERR377/003/ERR3771183,ftp.sra.ebi.ac.uk/vol1/err/ERR377/003/ERR3771183,7ccadd4cf66df360d48bf0c2c063ccac,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771183/mouse_roundSpermatids_ribo_1.fastq.gz,6410856345,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771183/mouse_roundSpermatids_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771183/mouse_roundSpermatids_ribo_1.fastq.gz,<NA>,a4bf91610722d90655c26fc64d4032f4,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772933,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426179,mouse_roundSpermatids_ribo_2,Illumina HiSeq 2500,ERR3771184,<NA>,<NA>,SAMEA6426179,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_roundSpermatids_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_2,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192387,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771184/mouse_roundSpermatids_ribo_2.fastq.gz,2208923965,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771184/mouse_roundSpermatids_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771184/mouse_roundSpermatids_ribo_2.fastq.gz,<NA>,54bf64d1019e6fefece5bd496f0f7f3a,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772934,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426180,mouse_roundSpermatids_rna_1,Illumina HiSeq 2500,ERR3771185,97775962,9875372162,SAMEA6426180,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_roundSpermatids_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/005/ERR3771185/ERR3771185.fastq.gz,3605726386,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3771185/ERR3771185.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/005/ERR3771185/ERR3771185.fastq.gz,120e7912e68988f03ce6e21cf823db67,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_roundSpermatids_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_rna_1,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192388,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/005/ERR3771185,3388708459,ftp.sra.ebi.ac.uk/vol1/err/ERR377/005/ERR3771185,ftp.sra.ebi.ac.uk/vol1/err/ERR377/005/ERR3771185,6ed83c510ddc576907a2f457581d6370,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771185/mouse_roundSpermatids_rna_1.fastq.gz,3333755338,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771185/mouse_roundSpermatids_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771185/mouse_roundSpermatids_rna_1.fastq.gz,<NA>,f238dacb684d4ad5172ba5d07e92734e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772935,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426181,mouse_roundSpermatids_rna_2,Illumina HiSeq 2500,ERR3771186,<NA>,<NA>,SAMEA6426181,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_roundSpermatids_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_roundSpermatids_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_rna_2,<NA>,E-MTAB-72471576596742:mouse_roundSpermatids_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192389,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771186/mouse_roundSpermatids_rna_2.fastq.gz,2068022407,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771186/mouse_roundSpermatids_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771186/mouse_roundSpermatids_rna_2.fastq.gz,<NA>,4fded93029eb532c4a873be64650e132,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772936,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426182,mouse_spermatocytes_ribo_1,Illumina HiSeq 2500,ERR3771187,224389341,22663323441,SAMEA6426182,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatocytes_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/007/ERR3771187/ERR3771187.fastq.gz,7204780043,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3771187/ERR3771187.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/007/ERR3771187/ERR3771187.fastq.gz,e5ee03741c0a872b7bbe749c358e3491,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_spermatocytes_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_ribo_1,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192390,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/007/ERR3771187,8018612104,ftp.sra.ebi.ac.uk/vol1/err/ERR377/007/ERR3771187,ftp.sra.ebi.ac.uk/vol1/err/ERR377/007/ERR3771187,fe8c8197590f2864aa339c55cd4dbf40,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771187/mouse_spermatocytes_ribo_1.fastq.gz,6540180454,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771187/mouse_spermatocytes_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771187/mouse_spermatocytes_ribo_1.fastq.gz,<NA>,c4e42002840611adcacda320c3eb3158,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772937,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426183,mouse_spermatocytes_ribo_2,Illumina HiSeq 2500,ERR3771188,<NA>,<NA>,SAMEA6426183,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatocytes_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_spermatocytes_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_ribo_2,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192391,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771188/mouse_spermatocytes_ribo_2.fastq.gz,2521915470,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771188/mouse_spermatocytes_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771188/mouse_spermatocytes_ribo_2.fastq.gz,<NA>,001951bf30e1920c738019531e877b90,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772938,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426184,mouse_spermatocytes_rna_1,Illumina HiSeq 2500,ERR3771189,89103148,8999417948,SAMEA6426184,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatocytes_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/009/ERR3771189/ERR3771189.fastq.gz,3247380014,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3771189/ERR3771189.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/009/ERR3771189/ERR3771189.fastq.gz,2681e5fcb9e47d624c44ba99a2251a3f,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_spermatocytes_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_rna_1,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192392,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/009/ERR3771189,3107846817,ftp.sra.ebi.ac.uk/vol1/err/ERR377/009/ERR3771189,ftp.sra.ebi.ac.uk/vol1/err/ERR377/009/ERR3771189,6f8c5c750cb8f182a8cb40c54438844b,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771189/mouse_spermatocytes_rna_1.fastq.gz,2996860977,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771189/mouse_spermatocytes_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771189/mouse_spermatocytes_rna_1.fastq.gz,<NA>,49397cf545b63bf75cfdd7051fed315d,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772939,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426185,mouse_spermatocytes_rna_2,Illumina HiSeq 2500,ERR3771190,<NA>,<NA>,SAMEA6426185,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatocytes_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_spermatocytes_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_rna_2,<NA>,E-MTAB-72471576596742:mouse_spermatocytes_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192393,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771190/mouse_spermatocytes_rna_2.fastq.gz,2054935533,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771190/mouse_spermatocytes_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771190/mouse_spermatocytes_rna_2.fastq.gz,<NA>,f9734e7ae08b0714851dc4f0d9336af3,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772940,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426186,mouse_spermatozoa_ribo_1,Illumina HiSeq 2500,ERR3771191,294527983,15020927133,SAMEA6426186,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatozoa_ribo_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/001/ERR3771191/ERR3771191.fastq.gz,7434352070,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3771191/ERR3771191.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/001/ERR3771191/ERR3771191.fastq.gz,52905968bc59a16dcb92250188946124,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_spermatozoa_ribo_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_ribo_1,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_ribo_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192394,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/001/ERR3771191,6187674143,ftp.sra.ebi.ac.uk/vol1/err/ERR377/001/ERR3771191,ftp.sra.ebi.ac.uk/vol1/err/ERR377/001/ERR3771191,06727d2b7de9a7bbc470c46cf1218792,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771191/mouse_spermatozoa_ribo_1.fastq.gz,6697001707,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771191/mouse_spermatozoa_ribo_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771191/mouse_spermatozoa_ribo_1.fastq.gz,<NA>,98a3141b4cac886aa69e9e3cdf3f361f,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772941,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426187,mouse_spermatozoa_ribo_2,Illumina HiSeq 2500,ERR3771192,<NA>,<NA>,SAMEA6426187,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatozoa_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_spermatozoa_ribo_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_ribo_2,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_ribo_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192395,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771192/mouse_spermatozoa_ribo_2.fastq.gz,5151230879,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771192/mouse_spermatozoa_ribo_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771192/mouse_spermatozoa_ribo_2.fastq.gz,<NA>,c245750e15c9b4b974d7a4fa8ef5358e,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772942,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426188,mouse_spermatozoa_rna_1,Illumina HiSeq 2500,ERR3771193,70036428,3571857828,SAMEA6426188,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatozoa_rna_1_s,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR377/003/ERR3771193/ERR3771193.fastq.gz,2081118967,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3771193/ERR3771193.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR377/003/ERR3771193/ERR3771193.fastq.gz,bacac7fdefbd061a1f1e4803102e3ecd,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-18,<NA>,SINGLE,mouse_spermatozoa_rna_1_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_rna_1,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_rna_1,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192396,ERP111066,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR377/003/ERR3771193,1475915853,ftp.sra.ebi.ac.uk/vol1/err/ERR377/003/ERR3771193,ftp.sra.ebi.ac.uk/vol1/err/ERR377/003/ERR3771193,0990d2c124f470e889b47bb288b3217e,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771193/mouse_spermatozoa_rna_1.fastq.gz,1884521429,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771193/mouse_spermatozoa_rna_1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771193/mouse_spermatozoa_rna_1.fastq.gz,<NA>,13761b226c414c97b288609c8b711ebd,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB28810,ERX3772943,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs,10090,Mus musculus,ssRNA-seq,TRANSCRIPTOMIC,Inverse rRNA,SAMEA6426189,mouse_spermatozoa_rna_2,Illumina HiSeq 2500,ERR3771194,<NA>,<NA>,SAMEA6426189,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Center for Molecular Biology (ZMBH), Heidelberg University\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-72471576596742:mouse_spermatozoa_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-12-17,2019-12-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-17,<NA>,SINGLE,mouse_spermatozoa_rna_2_s,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_rna_2,<NA>,E-MTAB-72471576596742:mouse_spermatozoa_rna_2,<NA>,\"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile (Mammalian) Library Prep Kit (Illumina) (formerly ARTseq), which was used in our study\",<NA>,<NA>,<NA>,<NA>,ERS4192397,ERP111066,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-7247,Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers,<NA>,<NA>,ERA2322814,fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771194/mouse_spermatozoa_rna_2.fastq.gz,1765033139,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771194/mouse_spermatozoa_rna_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771194/mouse_spermatozoa_rna_2.fastq.gz,<NA>,efb5244fdcf1b79b7de88d49c319a226,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5285,ERX385549,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341082,HeLa_Unk+Gfp_overexpression_replicate_1,Illumina HiSeq 2000,ERR419248,21602660,1101735660,SAMEA2341082,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HeLa,<NA>,\"EBML EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2278:HeLa Unk + Gfp Expression Extract 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR419/ERR419248/ERR419248.fastq.gz,774149963,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419248/ERR419248.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419248/ERR419248.fastq.gz,109c08293332dfb48c04bc8824606551,2014-01-30,2015-03-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,HeLa Unk + Gfp Expression Extract 1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2278:Sample_Lane2_HeLa_4.R1.fastq.gz,<NA>,E-MTAB-2278:HeLa_Unk+Gfp_overexpression_replicate_1,<NA>,\"Protocols: HeLa cells were grown in Dulbecco&apos;s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 micro-g/mL streptomycin at 37  degrees C and 5% CO2. To create Dox-inducible cell lines, we first transduced HeLa cells with MSCV-rtTA3-IRES-EcoR-PGK-Neo (pRIEN), a retrovirus we constructed in the MSCV backbone (Clontech) to co-express an improved reverse transactivator (rtTA3), the ecotropic receptor, and a neomycin resistance marker. Following G418 selection, stably rtTA3-expressing cells were subsequently infected ecotropically with a second retrovirus expressing a puromycin resistance gene and a TREtight-driven transcript encoding GFP alone (pTt-IGPP) or GFP and either full-length mouse or zebrafish Unkempt protein, or any of the mouse Unkempt-deletion mutants (pTtight-X-IGPP, where X is an ortholog or mutant of Unkempt), which we constructed in a self-inactivating retroviral backbone (pQCXIX, Clontech). To induce transgene expression, double-selected cells were treated with doxycycline (Sigma-Aldrich) at 1 micro-g/ml. To determine the effect of Unkempt on the rate of protein synthesis, we performed ribosome profiling experiment on inducible HeLa cells essentially as described (Ingolia et al., Nature Protocols, 2012), but using the linker and the primers as for the iCLIP experiments (Konig et al., JoVE, 2011). GFP-only or GFP and Unkempt-inducible Hela cells were grown in 15 cm dishes and harvested at 70% confluency. Prio\",<NA>,<NA>,<NA>,<NA>,ERS398753,ERP004683,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR419/ERR419248,685512833,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419248,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419248,7bcf725d77c6447a8e5d436ab2191e1b,<NA>,E-MTAB-2278,Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,<NA>,<NA>,ERA282985,fasp.sra.ebi.ac.uk:/vol1/run/ERR419/ERR419248/Sample_Lane2_HeLa_4.R1.fastq.gz,707680324,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419248/Sample_Lane2_HeLa_4.R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419248/Sample_Lane2_HeLa_4.R1.fastq.gz,<NA>,f220ce0f98eb07eb87bb3a29410b1a23,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5285,ERX385547,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341080,HeLa_Gfp_expression_control_replicate_1,Illumina HiSeq 2000,ERR419249,26065903,1329361053,SAMEA2341080,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HeLa,<NA>,\"EBML EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2278:HeLa Gfp Expression Control Extract 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR419/ERR419249/ERR419249.fastq.gz,948466776,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419249/ERR419249.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419249/ERR419249.fastq.gz,ce9626a00d8007bcdcb063379a2a7f9f,2014-01-30,2015-03-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,HeLa Gfp Expression Control Extract 1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2278:Sample_Lane2_HeLa_1.R1.fastq.gz,<NA>,E-MTAB-2278:HeLa_Gfp_expression_control_replicate_1,<NA>,\"Protocols: HeLa cells were grown in Dulbecco&apos;s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 micro-g/mL streptomycin at 37  degrees C and 5% CO2. To create Dox-inducible cell lines, we first transduced HeLa cells with MSCV-rtTA3-IRES-EcoR-PGK-Neo (pRIEN), a retrovirus we constructed in the MSCV backbone (Clontech) to co-express an improved reverse transactivator (rtTA3), the ecotropic receptor, and a neomycin resistance marker. Following G418 selection, stably rtTA3-expressing cells were subsequently infected ecotropically with a second retrovirus expressing a puromycin resistance gene and a TREtight-driven transcript encoding GFP alone (pTt-IGPP) or GFP and either full-length mouse or zebrafish Unkempt protein, or any of the mouse Unkempt-deletion mutants (pTtight-X-IGPP, where X is an ortholog or mutant of Unkempt), which we constructed in a self-inactivating retroviral backbone (pQCXIX, Clontech). To induce transgene expression, double-selected cells were treated with doxycycline (Sigma-Aldrich) at 1 micro-g/ml. To determine the effect of Unkempt on the rate of protein synthesis, we performed ribosome profiling experiment on inducible HeLa cells essentially as described (Ingolia et al., Nature Protocols, 2012), but using the linker and the primers as for the iCLIP experiments (Konig et al., JoVE, 2011). GFP-only or GFP and Unkempt-inducible Hela cells were grown in 15 cm dishes and harvested at 70% confluency. Prio\",<NA>,<NA>,<NA>,<NA>,ERS398751,ERP004683,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR419/ERR419249,839982008,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419249,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419249,5705bbfe3ca2e50cb082a098779cc44b,<NA>,E-MTAB-2278,Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,<NA>,<NA>,ERA282985,fasp.sra.ebi.ac.uk:/vol1/run/ERR419/ERR419249/Sample_Lane2_HeLa_1.R1.fastq.gz,867824789,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419249/Sample_Lane2_HeLa_1.R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419249/Sample_Lane2_HeLa_1.R1.fastq.gz,<NA>,c8eb8ffd1dddf76c58754c7384aecf28,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5285,ERX385548,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341081,HeLa_Unk+Gfp_overexpression_replicate_3,Illumina HiSeq 2000,ERR419250,21264420,1084485420,SAMEA2341081,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HeLa,<NA>,\"EBML EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2278:HeLa Unk + Gfp Expression Extract 3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR419/ERR419250/ERR419250.fastq.gz,797138716,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419250/ERR419250.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419250/ERR419250.fastq.gz,701f3fc18e621555a522155289e7528d,2014-01-30,2015-03-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,HeLa Unk + Gfp Expression Extract 3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2278:Sample_Lane2_HeLa_6.R1.fastq.gz,<NA>,E-MTAB-2278:HeLa_Unk+Gfp_overexpression_replicate_3,<NA>,\"Protocols: HeLa cells were grown in Dulbecco&apos;s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 micro-g/mL streptomycin at 37  degrees C and 5% CO2. To create Dox-inducible cell lines, we first transduced HeLa cells with MSCV-rtTA3-IRES-EcoR-PGK-Neo (pRIEN), a retrovirus we constructed in the MSCV backbone (Clontech) to co-express an improved reverse transactivator (rtTA3), the ecotropic receptor, and a neomycin resistance marker. Following G418 selection, stably rtTA3-expressing cells were subsequently infected ecotropically with a second retrovirus expressing a puromycin resistance gene and a TREtight-driven transcript encoding GFP alone (pTt-IGPP) or GFP and either full-length mouse or zebrafish Unkempt protein, or any of the mouse Unkempt-deletion mutants (pTtight-X-IGPP, where X is an ortholog or mutant of Unkempt), which we constructed in a self-inactivating retroviral backbone (pQCXIX, Clontech). To induce transgene expression, double-selected cells were treated with doxycycline (Sigma-Aldrich) at 1 micro-g/ml. To determine the effect of Unkempt on the rate of protein synthesis, we performed ribosome profiling experiment on inducible HeLa cells essentially as described (Ingolia et al., Nature Protocols, 2012), but using the linker and the primers as for the iCLIP experiments (Konig et al., JoVE, 2011). GFP-only or GFP and Unkempt-inducible Hela cells were grown in 15 cm dishes and harvested at 70% confluency. Prio\",<NA>,<NA>,<NA>,<NA>,ERS398752,ERP004683,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR419/ERR419250,703520252,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419250,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419250,81ba2e27c8dacb66b76119b2c1a1cddb,<NA>,E-MTAB-2278,Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,<NA>,<NA>,ERA282985,fasp.sra.ebi.ac.uk:/vol1/run/ERR419/ERR419250/Sample_Lane2_HeLa_6.R1.fastq.gz,731576861,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419250/Sample_Lane2_HeLa_6.R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419250/Sample_Lane2_HeLa_6.R1.fastq.gz,<NA>,bfdcc0eb18c58efd5bd8806f63400f3f,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5285,ERX385545,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341078,HeLa_Unk+Gfp_overexpression_replicate_2,Illumina HiSeq 2000,ERR419251,21619019,1102569969,SAMEA2341078,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HeLa,<NA>,\"EBML EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2278:HeLa Unk + Gfp Expression Extract 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR419/ERR419251/ERR419251.fastq.gz,783598217,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419251/ERR419251.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419251/ERR419251.fastq.gz,cdf38be632b114b90442b6bd9de64bd8,2014-01-30,2015-03-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,HeLa Unk + Gfp Expression Extract 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2278:Sample_Lane2_HeLa_5.R1.fastq.gz,<NA>,E-MTAB-2278:HeLa_Unk+Gfp_overexpression_replicate_2,<NA>,\"Protocols: HeLa cells were grown in Dulbecco&apos;s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 micro-g/mL streptomycin at 37  degrees C and 5% CO2. To create Dox-inducible cell lines, we first transduced HeLa cells with MSCV-rtTA3-IRES-EcoR-PGK-Neo (pRIEN), a retrovirus we constructed in the MSCV backbone (Clontech) to co-express an improved reverse transactivator (rtTA3), the ecotropic receptor, and a neomycin resistance marker. Following G418 selection, stably rtTA3-expressing cells were subsequently infected ecotropically with a second retrovirus expressing a puromycin resistance gene and a TREtight-driven transcript encoding GFP alone (pTt-IGPP) or GFP and either full-length mouse or zebrafish Unkempt protein, or any of the mouse Unkempt-deletion mutants (pTtight-X-IGPP, where X is an ortholog or mutant of Unkempt), which we constructed in a self-inactivating retroviral backbone (pQCXIX, Clontech). To induce transgene expression, double-selected cells were treated with doxycycline (Sigma-Aldrich) at 1 micro-g/ml. To determine the effect of Unkempt on the rate of protein synthesis, we performed ribosome profiling experiment on inducible HeLa cells essentially as described (Ingolia et al., Nature Protocols, 2012), but using the linker and the primers as for the iCLIP experiments (Konig et al., JoVE, 2011). GFP-only or GFP and Unkempt-inducible Hela cells were grown in 15 cm dishes and harvested at 70% confluency. Prio\",<NA>,<NA>,<NA>,<NA>,ERS398749,ERP004683,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR419/ERR419251,693516137,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419251,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419251,027837c93d17055e13cf7a948b467fce,<NA>,E-MTAB-2278,Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,<NA>,<NA>,ERA282985,fasp.sra.ebi.ac.uk:/vol1/run/ERR419/ERR419251/Sample_Lane2_HeLa_5.R1.fastq.gz,717300581,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419251/Sample_Lane2_HeLa_5.R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419251/Sample_Lane2_HeLa_5.R1.fastq.gz,<NA>,1bf447ab0a24f762c8ed4a8d3348eb5a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5285,ERX385546,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,Illumina HiSeq 2000 sequencing; Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA2341079,HeLa_Gfp_expression_control_replicate_2,Illumina HiSeq 2000,ERR419252,21819011,1112769561,SAMEA2341079,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,HeLa,<NA>,\"EBML EBI, Wellcome Trust Genome Campus, Hinxton, CB10 1SD\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2278:HeLa Gfp Expression Control Extract 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR419/ERR419252/ERR419252.fastq.gz,782923170,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419252/ERR419252.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR419/ERR419252/ERR419252.fastq.gz,35022cf217e2de312b6c97437b70dde6,2014-01-30,2015-03-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,HeLa Gfp Expression Control Extract 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2278:Sample_Lane2_HeLa_2.R1.fastq.gz,<NA>,E-MTAB-2278:HeLa_Gfp_expression_control_replicate_2,<NA>,\"Protocols: HeLa cells were grown in Dulbecco&apos;s Modified Eagle Medium (DMEM) supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 micro-g/mL streptomycin at 37  degrees C and 5% CO2. To create Dox-inducible cell lines, we first transduced HeLa cells with MSCV-rtTA3-IRES-EcoR-PGK-Neo (pRIEN), a retrovirus we constructed in the MSCV backbone (Clontech) to co-express an improved reverse transactivator (rtTA3), the ecotropic receptor, and a neomycin resistance marker. Following G418 selection, stably rtTA3-expressing cells were subsequently infected ecotropically with a second retrovirus expressing a puromycin resistance gene and a TREtight-driven transcript encoding GFP alone (pTt-IGPP) or GFP and either full-length mouse or zebrafish Unkempt protein, or any of the mouse Unkempt-deletion mutants (pTtight-X-IGPP, where X is an ortholog or mutant of Unkempt), which we constructed in a self-inactivating retroviral backbone (pQCXIX, Clontech). To induce transgene expression, double-selected cells were treated with doxycycline (Sigma-Aldrich) at 1 micro-g/ml. To determine the effect of Unkempt on the rate of protein synthesis, we performed ribosome profiling experiment on inducible HeLa cells essentially as described (Ingolia et al., Nature Protocols, 2012), but using the linker and the primers as for the iCLIP experiments (Konig et al., JoVE, 2011). GFP-only or GFP and Unkempt-inducible Hela cells were grown in 15 cm dishes and harvested at 70% confluency. Prio\",<NA>,<NA>,<NA>,<NA>,ERS398750,ERP004683,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR419/ERR419252,709569620,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419252,ftp.sra.ebi.ac.uk/vol1/err/ERR419/ERR419252,b09bb96cd6ba5a83161199b39b6992f2,<NA>,E-MTAB-2278,Ribosome profiling upon overexpression of the RNA-binding protein Unkempt,<NA>,<NA>,ERA282985,fasp.sra.ebi.ac.uk:/vol1/run/ERR419/ERR419252/Sample_Lane2_HeLa_2.R1.fastq.gz,715340567,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419252/Sample_Lane2_HeLa_2.R1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR419/ERR419252/Sample_Lane2_HeLa_2.R1.fastq.gz,<NA>,85b0ece6dbd02547d9309479bce09814,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5938,ERX432361,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,7227,Drosophila melanogaster,OTHER,OTHER,other,SAMEA2421582,Kc167_RNaseI,Illumina Genome Analyzer IIx,ERR466122,54573979,2279364497,SAMEA2421582,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Kc167,<NA>,DUNDEE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2421:assay 3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR466/ERR466122/ERR466122.fastq.gz,1971631218,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466122/ERR466122.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466122/ERR466122.fastq.gz,1af2af1b063a303bf2ab7516489015e4,2014-03-20,2015-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Extract 3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2421:Kc167_RNaseI.fq.gz,<NA>,E-MTAB-2421:Kc167_RNaseI,<NA>,\"Protocols: Cells were  cultured in the presence of 10% FBS in DMEM (U2OS cells) or in Schneider&apos;s medium (Kc167 cells). Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). Samples were incubated for 15 mi\",<NA>,<NA>,<NA>,<NA>,ERS426770,ERP005378,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR466/ERR466122,1692684072,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466122,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466122,794e77079b295c2aa2e9f375e9276320,<NA>,E-MTAB-2421,Ribosome profiling with MN and RNaseI,<NA>,<NA>,ERA295459,fasp.sra.ebi.ac.uk:/vol1/run/ERR466/ERR466122/Kc167_RNaseI.fq.gz,1980417581,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466122/Kc167_RNaseI.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466122/Kc167_RNaseI.fq.gz,<NA>,3e5ba48357afc408b65c809789443c73,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5938,ERX432358,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,7227,Drosophila melanogaster,OTHER,OTHER,other,SAMEA2421579,Kc167_MN,Illumina Genome Analyzer IIx,ERR466123,45195752,1873531552,SAMEA2421579,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,Kc167,<NA>,DUNDEE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2421:assay 4,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR466/ERR466123/ERR466123.fastq.gz,1655958568,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466123/ERR466123.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466123/ERR466123.fastq.gz,1329ea0798d94e567a8ce54af451fc8f,2014-03-20,2015-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Extract 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2421:Kc167_MN.fq.gz,<NA>,E-MTAB-2421:Kc167_MN,<NA>,\"Protocols: Cells were  cultured in the presence of 10% FBS in DMEM (U2OS cells) or in Schneider&apos;s medium (Kc167 cells). Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). Samples were incubated for 15 mi\",<NA>,<NA>,<NA>,<NA>,ERS426767,ERP005378,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR466/ERR466123,1399623938,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466123,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466123,07e5725a7732177f96bfb220a640f452,<NA>,E-MTAB-2421,Ribosome profiling with MN and RNaseI,<NA>,<NA>,ERA295459,fasp.sra.ebi.ac.uk:/vol1/run/ERR466/ERR466123/Kc167_MN.fq.gz,1661615087,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466123/Kc167_MN.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466123/Kc167_MN.fq.gz,<NA>,273ae614b762cfde37fac5b9883b6320,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5938,ERX432359,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,9606,Homo sapiens,OTHER,OTHER,other,SAMEA2421580,U2OS_MN,Illumina Genome Analyzer IIx,ERR466124,44727293,1852579997,SAMEA2421580,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,U2OS,<NA>,DUNDEE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2421:assay 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR466/ERR466124/ERR466124.fastq.gz,1883825708,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466124/ERR466124.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466124/ERR466124.fastq.gz,df4cd7ce98098199559d31745da3182a,2014-03-20,2015-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Extract 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2421:U2OS_MN.fq.gz,<NA>,E-MTAB-2421:U2OS_MN,<NA>,\"Protocols: Cells were  cultured in the presence of 10% FBS in DMEM (U2OS cells) or in Schneider&apos;s medium (Kc167 cells). Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). Samples were incubated for 15 mi\",<NA>,<NA>,<NA>,<NA>,ERS426768,ERP005378,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR466/ERR466124,1426693539,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466124,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466124,b3254a63309f86ee507e84852961cba3,<NA>,E-MTAB-2421,Ribosome profiling with MN and RNaseI,<NA>,<NA>,ERA295459,fasp.sra.ebi.ac.uk:/vol1/run/ERR466/ERR466124/U2OS_MN.fq.gz,1892273229,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466124/U2OS_MN.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466124/U2OS_MN.fq.gz,<NA>,d36eb7b3e55a745b78ea03556aa1153d,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB5938,ERX432360,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI,9606,Homo sapiens,OTHER,OTHER,other,SAMEA2421581,U2OS_RNaseI,Illumina Genome Analyzer IIx,ERR466125,41623326,1799245747,SAMEA2421581,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,U2OS,<NA>,DUNDEE,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2421:assay 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR466/ERR466125/ERR466125.fastq.gz,1756121428,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466125/ERR466125.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR466/ERR466125/ERR466125.fastq.gz,6305d9d2ef7921db572d09f54e791dc0,2014-03-20,2015-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Extract 1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2421:U2OS_RNAseI.fq.gz,<NA>,E-MTAB-2421:U2OS_RNaseI,<NA>,\"Protocols: Cells were  cultured in the presence of 10% FBS in DMEM (U2OS cells) or in Schneider&apos;s medium (Kc167 cells). Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). Samples were incubated for 15 mi\",<NA>,<NA>,<NA>,<NA>,ERS426769,ERP005378,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR466/ERR466125,1388122026,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466125,ftp.sra.ebi.ac.uk/vol1/err/ERR466/ERR466125,d6017ed83b5e8191a33293868222c3f4,<NA>,E-MTAB-2421,Ribosome profiling with MN and RNaseI,<NA>,<NA>,ERA295459,fasp.sra.ebi.ac.uk:/vol1/run/ERR466/ERR466125/U2OS_RNAseI.fq.gz,1761193738,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466125/U2OS_RNAseI.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR466/ERR466125/U2OS_RNAseI.fq.gz,<NA>,7171a541a48f733eb5579f3cd89062e8,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7261,ERX556151,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2766082,smeg RNA-seq rep1,Illumina HiSeq 2500,ERR599189,89004821,4539245871,SAMEA2766082,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Wadsworth Center, New York State of Health\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2929:smeg RNA-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz,3141004216,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz,5938dce924809007a05335b77c9ffe29,2014-09-12,2014-12-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,smeg RNA-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2929:Myco-F_NoIndex_L002_R1_001.fastq.gz,<NA>,E-MTAB-2929:smeg RNA-seq rep1,<NA>,\"Protocols: 200 ml 7H9 medium was inoculated with 2.0 ml of overnight MC2 155 culture, and grew at 37 degrees C to an OD600 of ~1.0. The cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 ug/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.7 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation. 16S and 23S ribosomal RNAs were removed by subtractive hybridization using an Epicentre Ribo-Zero Magnetic kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size selection of ~28nt RNA fragments. Approximately 25-30 nt poly-A tails were added to recovered RNA fragments with an Ambion poly(A) tailing kit (Life Technologies)  following the manufacturer&apos;s guide. The polyadenylated RNA samples were reverse transcribed using\",<NA>,<NA>,<NA>,<NA>,ERS542795,ERP006965,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR599/ERR599189,2714543152,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599189,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599189,f4d43591631a189399986c274eb4b188,<NA>,E-MTAB-2929,Ribosome Profiling of Mycobacterium smegmatis,<NA>,<NA>,ERA357895,fasp.sra.ebi.ac.uk:/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz,3800125462,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz,<NA>,8617097d7ceb03a1b15ecd5b08ba075c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7261,ERX556152,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,OTHER,TRANSCRIPTOMIC,size fractionation,SAMEA2766083,smeg Ribo-seq rep1,Illumina HiSeq 2500,ERR599190,99829689,5091314139,SAMEA2766083,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Wadsworth Center, New York State of Health\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2929:smeg Ribo-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR599/ERR599190/ERR599190.fastq.gz,3413937166,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599190/ERR599190.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599190/ERR599190.fastq.gz,a49c463b2e6253812ce19a56e2fd1268,2014-09-12,2014-12-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,smeg Ribo-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2929:Myco-M_NoIndex_L001_R1_001.fastq.gz,<NA>,E-MTAB-2929:smeg Ribo-seq rep1,<NA>,\"Protocols: 200 ml 7H9 medium was inoculated with 2.0 ml of overnight MC2 155 culture, and grew at 37 degrees C to an OD600 of ~1.0. The cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 ug/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.7 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size selection of ~28nt RNA fragments. Approximately 25-30 nt poly-A tails were added to recovered RNA fragments with an Ambion poly(A) tailing kit (Life Technologies)  following the manufacturer&apos;s guide. The polyadenylated RNA samples were reverse transcribed using JW2364 and SuperScript III (Life Tec\",<NA>,<NA>,<NA>,<NA>,ERS542796,ERP006965,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR599/ERR599190,3048337426,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599190,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599190,807973c40111fc4dfdb3c95141cd33f1,<NA>,E-MTAB-2929,Ribosome Profiling of Mycobacterium smegmatis,<NA>,<NA>,ERA357895,fasp.sra.ebi.ac.uk:/vol1/run/ERR599/ERR599190/Myco-M_NoIndex_L001_R1_001.fastq.gz,4226202723,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599190/Myco-M_NoIndex_L001_R1_001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599190/Myco-M_NoIndex_L001_R1_001.fastq.gz,<NA>,59cdfd787247057f18da857ddd0aed71,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7261,ERX556153,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2766084,smeg RNA-seq rep2,Illumina HiSeq 2500,ERR599191,100542696,5127677496,SAMEA2766084,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Wadsworth Center, New York State of Health\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2929:smeg RNA-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR599/ERR599191/ERR599191.fastq.gz,3519192936,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599191/ERR599191.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599191/ERR599191.fastq.gz,7debc4b0235a3bb25bf223d3f276c0a6,2014-09-12,2014-12-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,smeg RNA-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2929:Myco-Total-mRNA_NoIndex_L006_R1_001.fastq.gz,<NA>,E-MTAB-2929:smeg RNA-seq rep2,<NA>,\"Protocols: 200 ml 7H9 medium was inoculated with 2.0 ml of overnight MC2 155 culture, and grew at 37 degrees C to an OD600 of ~1.0. The cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 ug/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.7 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation. 16S and 23S ribosomal RNAs were removed by subtractive hybridization using an Epicentre Ribo-Zero Magnetic kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size selection of ~28nt RNA fragments. Approximately 25-30 nt poly-A tails were added to recovered RNA fragments with an Ambion poly(A) tailing kit (Life Technologies)  following the manufacturer&apos;s guide. The polyadenylated RNA samples were reverse transcribed using\",<NA>,<NA>,<NA>,<NA>,ERS542797,ERP006965,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR599/ERR599191,3026722875,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599191,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599191,9c0188b0f155a27617ff551cc1d1d3f2,<NA>,E-MTAB-2929,Ribosome Profiling of Mycobacterium smegmatis,<NA>,<NA>,ERA357895,fasp.sra.ebi.ac.uk:/vol1/run/ERR599/ERR599191/Myco-Total-mRNA_NoIndex_L006_R1_001.fastq.gz,4300511337,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599191/Myco-Total-mRNA_NoIndex_L006_R1_001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599191/Myco-Total-mRNA_NoIndex_L006_R1_001.fastq.gz,<NA>,3e2298a8198d41b8c81801b07c72cfcd,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7261,ERX556154,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis,246196,Mycolicibacterium smegmatis MC2 155,OTHER,TRANSCRIPTOMIC,size fractionation,SAMEA2766085,smeg Ribo-seq rep2,Illumina HiSeq 2500,ERR599192,80612378,4111231278,SAMEA2766085,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,\"Wadsworth Center, New York State of Health\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2929:smeg Ribo-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR599/ERR599192/ERR599192.fastq.gz,2536834158,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599192/ERR599192.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599192/ERR599192.fastq.gz,c6f678af405dcf956fdfbfdc91fc548c,2014-09-12,2014-12-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,smeg Ribo-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2929:Myco-Footprints_NoIndex_L005_R1_001.fastq.gz,<NA>,E-MTAB-2929:smeg Ribo-seq rep2,<NA>,\"Protocols: 200 ml 7H9 medium was inoculated with 2.0 ml of overnight MC2 155 culture, and grew at 37 degrees C to an OD600 of ~1.0. The cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 ug/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.7 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size selection of ~28nt RNA fragments. Approximately 25-30 nt poly-A tails were added to recovered RNA fragments with an Ambion poly(A) tailing kit (Life Technologies)  following the manufacturer&apos;s guide. The polyadenylated RNA samples were reverse transcribed using JW2364 and SuperScript III (Life Tec\",<NA>,<NA>,<NA>,<NA>,ERS542798,ERP006965,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR599/ERR599192,2368647417,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599192,ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599192,87a55c6c5dbdfcbe650e50feccc339d6,<NA>,E-MTAB-2929,Ribosome Profiling of Mycobacterium smegmatis,<NA>,<NA>,ERA357895,fasp.sra.ebi.ac.uk:/vol1/run/ERR599/ERR599192/Myco-Footprints_NoIndex_L005_R1_001.fastq.gz,3127464295,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599192/Myco-Footprints_NoIndex_L005_R1_001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599192/Myco-Footprints_NoIndex_L005_R1_001.fastq.gz,<NA>,306733ec10ccf83a573d1696dc72a856,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7276,ERX558436,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,3055,Chlamydomonas reinhardtii,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769884,Chlamy-RNASeq-WT-2,Illumina HiSeq 2000,ERR601607,55247955,2707149795,SAMEA2769884,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Plant Sciences University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2934:Chlamy-RNASeq-WT-2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601607/ERR601607.fastq.gz,2089079995,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601607/ERR601607.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601607/ERR601607.fastq.gz,5842873abd70943c674a795aa69392ab,2014-09-16,2015-10-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Chlamy-RNASeq-WT-2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2934:Chlamy-RnaSeq-WT-2.fq.gz,<NA>,E-MTAB-2934:Chlamy-RNASeq-WT-2,<NA>,\"Protocols: Chlamydomonas reinhardtii cells (CC-4350 cw Arg 7-8 mt+) (Chlamydomonas Resource Center [http://chlamycollection.org/strains/]) were maintained in 750 ml Tris-acetate-phosphate medium (Harris, 1989) at 23 C on a rotatory shaker (140 rpm) under constant illumination with white light (70 uE.m2.sec-1) to mid-log phase (OD750 ~ 0.6). Chlamydomonas cultures were harvested by filtering off the media, the cell paste was flash frozen and pulverized in liquid nitrogen with 5 ml of pre-frozen lysis buffer (20 mM Tris-Cl pH7.5, 140 mM KCl, 5 mM MgCl2, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol, 0.05 mM DTT, 0.1% NP40 and 5% sucrose). The frozen powder was thawed on ice and clarified by centrifugation for 30 min at 4700 rpm at 4 C followed by adjustment of A254 to ~4 before snap-freezing in liquid nitrogen and storage at -80 C. For Chlamydomonas, lysates were slowly thawed on ice and a 200 ul aliquot (A254 = 4) treated with 300 U RNAse 1 (100 U/ul, Life Technologies cat. no. AM2294) in a thermo-mixer at 28 C, 400 rpm for 30 min. The tube was placed on ice, 2 ul of SUPERase-In RNase inhibitor (20 U/ml, Life Technologies) added and the reaction layered onto a 1 M sucrose cushion prepared in Chlamydomonas polysome buffer (20 mM Tris-HCl pH 7.5, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol and 0.5 ug/ml SUPERase-In.). The cushion was ultracentrifuged at 38,000 rpm (5 hr, 4C) in a Beckman Sw41Ti rotor. 150 ul of each cell lysate was\",<NA>,<NA>,<NA>,<NA>,ERS543670,ERP006983,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601607,2486464332,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601607,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601607,f4e240849792a22630801b989cd11406,<NA>,E-MTAB-2934,Examples of ribosome profiling in chlamydomonas and mouse,<NA>,<NA>,ERA358090,fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601607/Chlamy-RnaSeq-WT-2.fq.gz,1917388454,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601607/Chlamy-RnaSeq-WT-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601607/Chlamy-RnaSeq-WT-2.fq.gz,<NA>,826c928c63c6502a785b38712dc80821,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7276,ERX558438,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,3055,Chlamydomonas reinhardtii,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769886,Chlamy-RiboSeq-WT-2,Illumina HiSeq 2000,ERR601608,26028360,1275389640,SAMEA2769886,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Plant Sciences University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2934:Chlamy-RiboSeq-WT-2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz,980010863,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz,eb1f87cda1c1717a14f541332e6ce798,2014-09-16,2015-10-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Chlamy-RiboSeq-WT-2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2934:Chlamy-RiboSeq-WT-2.fq.gz,<NA>,E-MTAB-2934:Chlamy-RiboSeq-WT-2,<NA>,\"Protocols: Chlamydomonas reinhardtii cells (CC-4350 cw Arg 7-8 mt+) (Chlamydomonas Resource Center [http://chlamycollection.org/strains/]) were maintained in 750 ml Tris-acetate-phosphate medium (Harris, 1989) at 23 C on a rotatory shaker (140 rpm) under constant illumination with white light (70 uE.m2.sec-1) to mid-log phase (OD750 ~ 0.6). Chlamydomonas cultures were harvested by filtering off the media, the cell paste was flash frozen and pulverized in liquid nitrogen with 5 ml of pre-frozen lysis buffer (20 mM Tris-Cl pH7.5, 140 mM KCl, 5 mM MgCl2, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol, 0.05 mM DTT, 0.1% NP40 and 5% sucrose). The frozen powder was thawed on ice and clarified by centrifugation for 30 min at 4700 rpm at 4 C followed by adjustment of A254 to ~4 before snap-freezing in liquid nitrogen and storage at -80 C. For Chlamydomonas, lysates were slowly thawed on ice and a 200 ul aliquot (A254 = 4) treated with 300 U RNAse 1 (100 U/ul, Life Technologies cat. no. AM2294) in a thermo-mixer at 28 C, 400 rpm for 30 min. The tube was placed on ice, 2 ul of SUPERase-In RNase inhibitor (20 U/ml, Life Technologies) added and the reaction layered onto a 1 M sucrose cushion prepared in Chlamydomonas polysome buffer (20 mM Tris-HCl pH 7.5, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol and 0.5 ug/ml SUPERase-In.). The cushion was ultracentrifuged at 38,000 rpm (5 hr, 4C) in a Beckman Sw41Ti rotor. 150 ul of each cell lysate was\",<NA>,<NA>,<NA>,<NA>,ERS543672,ERP006983,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601608,1190803293,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601608,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601608,e24b4f4b4ef13794a590de493c9327c5,<NA>,E-MTAB-2934,Examples of ribosome profiling in chlamydomonas and mouse,<NA>,<NA>,ERA358090,fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz,899952284,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz,<NA>,24442a30a4ced443a5aab859a2b8a567,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7276,ERX558437,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769885,MusMus-RNASeq,Illumina HiSeq 2000,ERR601609,80602120,4110708120,SAMEA2769885,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Plant Sciences University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2934:MusMus-RNASeq,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz,3434877014,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz,f7937e4877c45b101be2307c8a77ffca,2014-09-16,2015-10-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,MusMus-RNASeq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2934:MusMus-RNASeq.fq.gz,<NA>,E-MTAB-2934:MusMus-RNASeq,<NA>,\"Protocols: Murine 17 clone 1 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum. Cells (107) were plated in a 10 cm dish and upon reaching 100% confluence, cycloheximide (Sigma-Aldrich) was added to 100 ug/ml. After 2 min, cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 sec, transferred to dry ice and 400 ul of lysis buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 ug/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies) dripped on. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 C, the supernatants recovered and stored in liquid nitrogen. For mouse samples, lysates were slowly thawed on ice and 250 ul treated with 7.5 ul RNase 1 followed by incubation for 45 min at room temperature on a rotating wheel. 10 ul of SUPERase-In RNase inhibitor was added, the sample layered onto a 1M sucrose cushion in mammalian polysome buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 100 ug/ml cycloheximide) and ultracentrifuged at 28,000 rpm (16 hr, 4 C) in a Beckman SW55Ti rotor. Subsequently, all ribosome pellets were resuspended in 200 ul of the corresponding polysome buffer and digested with proteinase K (10 mM Tris-HCl pH 7.5, 10% SDS, 200 ug/ml Proteinase K [New England Biolabs]) fo\",<NA>,<NA>,<NA>,<NA>,ERS543671,ERP006983,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601609,2910647392,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601609,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601609,cbf868c74f1d4a377db9bdcca2e90d54,<NA>,E-MTAB-2934,Examples of ribosome profiling in chlamydomonas and mouse,<NA>,<NA>,ERA358090,fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz,3180018428,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz,<NA>,f5b5a39ddcd28c1ad9cdc658d434b112,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7276,ERX558439,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMEA2769887,MusMus-RiboSeq,Illumina HiSeq 2000,ERR601610,38543800,1965733800,SAMEA2769887,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Department of Plant Sciences University of Cambridge,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2934:MusMus-RiboSeq,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz,1687874791,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz,52519842bad250f56c87b8940e27cda4,2014-09-16,2015-10-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,MusMus-RiboSeq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2934:MusMus-RiboSeq.fq.gz,<NA>,E-MTAB-2934:MusMus-RiboSeq,<NA>,\"Protocols: Murine 17 clone 1 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum. Cells (107) were plated in a 10 cm dish and upon reaching 100% confluence, cycloheximide (Sigma-Aldrich) was added to 100 ug/ml. After 2 min, cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 sec, transferred to dry ice and 400 ul of lysis buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 ug/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies) dripped on. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 C, the supernatants recovered and stored in liquid nitrogen. For mouse samples, lysates were slowly thawed on ice and 250 ul treated with 7.5 ul RNase 1 followed by incubation for 45 min at room temperature on a rotating wheel. 10 ul of SUPERase-In RNase inhibitor was added, the sample layered onto a 1M sucrose cushion in mammalian polysome buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 100 ug/ml cycloheximide) and ultracentrifuged at 28,000 rpm (16 hr, 4 C) in a Beckman SW55Ti rotor. Subsequently, all ribosome pellets were resuspended in 200 ul of the corresponding polysome buffer and digested with proteinase K (10 mM Tris-HCl pH 7.5, 10% SDS, 200 ug/ml Proteinase K [New England Biolabs]) fo\",<NA>,<NA>,<NA>,<NA>,ERS543673,ERP006983,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601610,1410552209,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601610,ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601610,f39d5a4ac05b89c54c0c5f6c4a8fdb2f,<NA>,E-MTAB-2934,Examples of ribosome profiling in chlamydomonas and mouse,<NA>,<NA>,ERA358090,fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz,1571241062,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz,<NA>,2cb95b43062f90b3f6a3d26b36ab884c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7282,ERX561998,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770197,Ribosome_profiling_LUs19,Illumina HiSeq 2500,ERR605044,187831868,9391593400,SAMEA2770197,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,HEK293,\"Department of Molecular Neuroscience, UCL Institute of Neurology\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2941:Ribosome_profiling_LUs19,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz,7876556889,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz,00702a68d0d8893c4708120792ca9023,2014-09-16,2015-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Ribosome_profiling_LUs19,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2941:LUs19.fq.gz,<NA>,E-MTAB-2941:Ribosome_profiling_LUs19,<NA>,\"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\",<NA>,<NA>,<NA>,<NA>,ERS543983,ERP006990,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605044,9408655122,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605044,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605044,9a61ebbe3b7826e292a1abd14d17d3ab,<NA>,E-MTAB-2941,Analysis of ribosomal occupancy with ribosome profiling.,<NA>,<NA>,ERA358123,fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605044/LUs19.fq.gz,7997001793,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605044/LUs19.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605044/LUs19.fq.gz,<NA>,8aacb7829a24ef2bfc65ef0ad9ac8270,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7282,ERX561999,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770198,Ribosome_profiling_LUs18,Illumina HiSeq 2500,ERR605045,125136641,6256832050,SAMEA2770198,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,HEK293,\"Department of Molecular Neuroscience, UCL Institute of Neurology\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2941:Ribosome_profiling_LUs18,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz,4854486029,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz,c0d00975ebe359cc9fd6cb93fd86e050,2014-09-16,2015-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Ribosome_profiling_LUs18,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2941:LUs18.fq.gz,<NA>,E-MTAB-2941:Ribosome_profiling_LUs18,<NA>,\"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\",<NA>,<NA>,<NA>,<NA>,ERS543984,ERP006990,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605045,5992215540,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605045,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605045,3f78911919cc8a67c97572ff455df401,<NA>,E-MTAB-2941,Analysis of ribosomal occupancy with ribosome profiling.,<NA>,<NA>,ERA358123,fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605045/LUs18.fq.gz,4919838306,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605045/LUs18.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605045/LUs18.fq.gz,<NA>,f10e35332d6ae363d7b80fe6f6495d1c,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7282,ERX562000,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,cDNA,SAMEA2770199,Ribosome_profiling_LUs20,Illumina HiSeq 2500,ERR605046,169888632,8494431600,SAMEA2770199,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,HEK293,\"Department of Molecular Neuroscience, UCL Institute of Neurology\",ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2941:Ribosome_profiling_LUs20,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz,6928377564,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz,a83d6990fbac5cba1ddfa7f2940251e7,2014-09-16,2015-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,Ribosome_profiling_LUs20,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2941:LUs20.fq.gz,<NA>,E-MTAB-2941:Ribosome_profiling_LUs20,<NA>,\"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\",<NA>,<NA>,<NA>,<NA>,ERS543985,ERP006990,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605046,8432389084,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605046,ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605046,ab52a5ebad2c57b3147f5197fd2ce317,<NA>,E-MTAB-2941,Analysis of ribosomal occupancy with ribosome profiling.,<NA>,<NA>,ERA358123,fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605046/LUs20.fq.gz,7026234110,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605046/LUs20.fq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605046/LUs20.fq.gz,<NA>,c1ed5c2ff1255fc9e8e902a2abfa41ac,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575541,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130362,RyhB RNA-seq rep2,Illumina HiSeq 2500,ERR618768,204609482,5115237050,SAMEA3130362,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:RyhB RNA-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz,5733524945,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz,514e46d210bd165d51c6028bd67da8fe,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RyhB RNA-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:RyhB-RNAseq-rep2-trimmed.fastq.gz,<NA>,E-MTAB-2903:RyhB RNA-seq rep2,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation as described (Oh et al. 2011). 16S and 23S ribosomal RNAs were removed by subtractive hybridization using Ambion MICROExpressTM kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size s...\",<NA>,<NA>,<NA>,<NA>,ERS544002,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618768,3762295101,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618768,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618768,20f3e37ab44bf6189fd8bae20adec543,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz,5091767307,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz,<NA>,5b03fa5a3df1ef1d9458a7bf93d69051,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575542,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130357,RyhB RNA-seq rep1,Illumina HiSeq 2500,ERR618769,66334068,3383037468,SAMEA3130357,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:RyhB RNA-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618769/ERR618769.fastq.gz,2407388202,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618769/ERR618769.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618769/ERR618769.fastq.gz,68a08a3128e41c559e00f33a580cdf20,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RyhB RNA-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:RyhB-RNAseq-rep1.fastq.gz,<NA>,E-MTAB-2903:RyhB RNA-seq rep1,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation as described (Oh et al. 2011). 16S and 23S ribosomal RNAs were removed by subtractive hybridization using Ambion MICROExpressTM kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size s...\",<NA>,<NA>,<NA>,<NA>,ERS544003,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618769,2062936581,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618769,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618769,08a4c6888d35f7555052d4215f64902c,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618769/RyhB-RNAseq-rep1.fastq.gz,2905411602,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618769/RyhB-RNAseq-rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618769/RyhB-RNAseq-rep1.fastq.gz,<NA>,944ce7636618aeff5365bc0c178eba04,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575546,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130355,RyhB Ribo-seq rep2,Illumina HiSeq 2500,ERR618770,194819312,4870482800,SAMEA3130355,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:RyhB Ribo-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618770/ERR618770.fastq.gz,5225005926,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618770/ERR618770.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618770/ERR618770.fastq.gz,838602d2d514cb82c119960d1ced0c43,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RyhB Ribo-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:RyhB-Riboseq-rep2-trimmed.fastq.gz,<NA>,E-MTAB-2903:RyhB Ribo-seq rep2,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. Footprinting and monosome isolation were performed as described (Oh et al. 2011). Briefly, the pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel pur...\",<NA>,<NA>,<NA>,<NA>,ERS544007,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618770,3521687322,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618770,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618770,27a05d62b13013e36a59cc3a7f909f99,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618770/RyhB-Riboseq-rep2-trimmed.fastq.gz,4625890627,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618770/RyhB-Riboseq-rep2-trimmed.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618770/RyhB-Riboseq-rep2-trimmed.fastq.gz,<NA>,80bd2b400cb6c136dbb4f0ec6e045649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575545,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130358,control Ribo-seq rep2,Illumina HiSeq 2500,ERR618771,161912593,4047814825,SAMEA3130358,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:control Ribo-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618771/ERR618771.fastq.gz,4090858273,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618771/ERR618771.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618771/ERR618771.fastq.gz,1d8b27c4f20205e595f22413fb57ad0b,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,control Ribo-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:NM12-Riboseq-rep2-trimmed.fastq.gz,<NA>,E-MTAB-2903:control Ribo-seq rep2,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. Footprinting and monosome isolation were performed as described (Oh et al. 2011). Briefly, the pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel pur...\",<NA>,<NA>,<NA>,<NA>,ERS544006,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618771,2809505488,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618771,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618771,489731726c04f5207a903665ab58d394,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618771/NM12-Riboseq-rep2-trimmed.fastq.gz,3593762830,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618771/NM12-Riboseq-rep2-trimmed.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618771/NM12-Riboseq-rep2-trimmed.fastq.gz,<NA>,58d88ab0648845d721c1e47f98f4492a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575543,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130361,RyhB Ribo-seq rep1,Illumina HiSeq 2500,ERR618772,69520696,3545555496,SAMEA3130361,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:RyhB Ribo-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618772/ERR618772.fastq.gz,2712643558,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618772/ERR618772.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618772/ERR618772.fastq.gz,43a5e86121beb631e6eb86cf75e927a4,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,RyhB Ribo-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:RyhB-Riboseq-rep1.fastq.gz,<NA>,E-MTAB-2903:RyhB Ribo-seq rep1,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. Footprinting and monosome isolation were performed as described (Oh et al. 2011). Briefly, the pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel pur...\",<NA>,<NA>,<NA>,<NA>,ERS544004,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618772,2419975338,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618772,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618772,bc1a85c03fdb40bb3c3de1e81f4f1846,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618772/RyhB-Riboseq-rep1.fastq.gz,3193126021,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618772/RyhB-Riboseq-rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618772/RyhB-Riboseq-rep1.fastq.gz,<NA>,d5e31c005cbdb13721c45d4213a8d6a8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575540,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130359,control RNA-seq rep1,Illumina HiSeq 2500,ERR618773,94444604,4816674804,SAMEA3130359,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:control RNA-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618773/ERR618773.fastq.gz,3585721225,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618773/ERR618773.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618773/ERR618773.fastq.gz,05d95a9c686fbcc4d4769e846fceaa39,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,control RNA-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:NM12-RNAseq-rep1.fastq.gz,<NA>,E-MTAB-2903:control RNA-seq rep1,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation as described (Oh et al. 2011). 16S and 23S ribosomal RNAs were removed by subtractive hybridization using Ambion MICROExpressTM kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size s...\",<NA>,<NA>,<NA>,<NA>,ERS544001,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618773,3077775289,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618773,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618773,cb1f4b124f4c90e87eb336b1055c9f79,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618773/NM12-RNAseq-rep1.fastq.gz,4306037972,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618773/NM12-RNAseq-rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618773/NM12-RNAseq-rep1.fastq.gz,<NA>,970987619194c2881c853f5575bc9b35,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575544,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130360,control RNA-seq rep2,Illumina HiSeq 2500,ERR618774,188584261,4714606525,SAMEA3130360,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:control RNA-seq rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618774/ERR618774.fastq.gz,5086362639,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618774/ERR618774.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618774/ERR618774.fastq.gz,74f3cbc121b974d6f40f3fe86b65683c,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,control RNA-seq rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:NM12-RNAseq-rep2-trimmed.fastq.gz,<NA>,E-MTAB-2903:control RNA-seq rep2,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation as described (Oh et al. 2011). 16S and 23S ribosomal RNAs were removed by subtractive hybridization using Ambion MICROExpressTM kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel purification was performed for size s...\",<NA>,<NA>,<NA>,<NA>,ERS544005,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618774,3359451702,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618774,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618774,ba67a9c2472196f69ecabcff8b73ece7,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618774/NM12-RNAseq-rep2-trimmed.fastq.gz,4495427548,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618774/NM12-RNAseq-rep2-trimmed.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618774/NM12-RNAseq-rep2-trimmed.fastq.gz,<NA>,1415982922ee982e41b48640fa44ad60,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJEB7301,ERX575539,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMEA3130356,control Ribo-seq rep1,Illumina HiSeq 2500,ERR618775,48903913,2494099563,SAMEA3130356,<NA>,<NA>,<NA>,<NA>,<NA>,ArrayExpress,<NA>,<NA>,Wadsworth Center New York State Department of Health,ERC000011,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,E-MTAB-2903:control Ribo-seq rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618775/ERR618775.fastq.gz,1884833166,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618775/ERR618775.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618775/ERR618775.fastq.gz,766870e193d03ace9338d38133bfacb0,2014-09-17,2014-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-16,<NA>,SINGLE,control Ribo-seq rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E-MTAB-2903:NM12-Riboseq-rep1.fastq.gz,<NA>,E-MTAB-2903:control Ribo-seq rep1,<NA>,\"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 μg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. Footprinting and monosome isolation were performed as described (Oh et al. 2011). Briefly, the pulverized cells were thawed. The clarified lysates were treated with micrococcal nuclease (MNase, Worthington Biochemical Corp). Monosomes were isolated by sucrose gradient fractionation. mRNA footprints were purified with acid phenol and chloroform extraction, and isopropanol precipitation. Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). Then polyacrylamide gel pur...\",<NA>,<NA>,<NA>,<NA>,ERS544000,ERP007009,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618775,1684887320,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618775,ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618775,2ef1140833d7919d9108ce2fa4597132,<NA>,E-MTAB-2903,Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli,<NA>,<NA>,ERA358164,fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618775/NM12-Riboseq-rep1.fastq.gz,2227585661,FASTQ,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618775/NM12-Riboseq-rep1.fastq.gz,ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618775/NM12-Riboseq-rep1.fastq.gz,<NA>,edda9c3fd7f0d920556106c152a88241,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA564991,SRX6832089,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 3,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 3,376686,Flavobacterium johnsoniae UW101,OTHER,TRANSCRIPTOMIC,other,SAMN12730772,F johnsoniae culture 2016 replicate 3,Illumina HiSeq 2500,SRR10100140,19043505,440593520,SAMN12730772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6289735,<NA>,<NA>,2016-01-01,<NA>,<NA>,\"USA: Columbus, OH\",<NA>,<NA>,<NA>,<NA>,ATCC:17061,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,FJ16rep3Ribo,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/040/SRR10100140/SRR10100140.fastq.gz,277747753,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/040/SRR10100140/SRR10100140.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/040/SRR10100140/SRR10100140.fastq.gz,b2421c94ddd99b4e4b915cfe2f669e89,2020-04-14,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,\"Soil, England\",2020-04-14,<NA>,SINGLE,FJ16rep3Ribo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,FJRIBO3.trimmed.bam,<NA>,FJ16REP3,<NA>,F johnsoniae culture 2016 replicate 3,<NA>,<NA>,<NA>,<NA>,SRS5373870,SRP221399,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/040/SRR10100140,196326181,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/040/SRR10100140,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/040/SRR10100140,c82f60d1d112a0e4a838248084aaca4a,UW101,PRJNA564991,Flavobacterium johnsoniae ribosome profiling,<NA>,<NA>,SRA960872,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA564991,SRX6832088,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 2,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 2,376686,Flavobacterium johnsoniae UW101,OTHER,TRANSCRIPTOMIC,other,SAMN12730771,F johnsoniae culture 2016 replicate 2,Illumina HiSeq 2500,SRR10100141,14410982,335664145,SAMN12730771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6289735,<NA>,<NA>,2016-01-01,<NA>,<NA>,\"USA: Columbus, OH\",<NA>,<NA>,<NA>,<NA>,ATCC:17061,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,FJ16rep2Ribo,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/041/SRR10100141/SRR10100141.fastq.gz,215292902,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/041/SRR10100141/SRR10100141.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/041/SRR10100141/SRR10100141.fastq.gz,732c82ac53ae4182d6a16f19c5a4f510,2020-04-14,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,\"Soil, England\",2020-04-14,<NA>,SINGLE,FJ16rep2Ribo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,FJRIBO2.trimmed.bam,<NA>,FJ16REP2,<NA>,F johnsoniae culture 2016 replicate 2,<NA>,<NA>,<NA>,<NA>,SRS5373869,SRP221399,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/041/SRR10100141,152664161,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/041/SRR10100141,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/041/SRR10100141,fe78dfc50c599ccdff17ecc7cf35a624,UW101,PRJNA564991,Flavobacterium johnsoniae ribosome profiling,<NA>,<NA>,SRA960872,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA564991,SRX6832087,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 1,Illumina HiSeq 2500 sequencing; Ribosome profiling library of FJ 2016 replicate 1,986,Flavobacterium johnsoniae,OTHER,TRANSCRIPTOMIC,other,SAMN12730770,F johnsoniae culture 2016 replicate 1,Illumina HiSeq 2500,SRR10100142,26216828,637267461,SAMN12730770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6289735,<NA>,<NA>,2016-01-01,<NA>,<NA>,\"USA: Columbus, OH\",<NA>,<NA>,<NA>,<NA>,ATCC:17061,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,FJ16rep1Ribo,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/042/SRR10100142/SRR10100142.fastq.gz,406457059,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/042/SRR10100142/SRR10100142.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/042/SRR10100142/SRR10100142.fastq.gz,9545ea7290fc24e9a3095ecf828152b0,2020-04-14,2020-04-14,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,\"Soil, England\",2020-04-14,<NA>,SINGLE,FJ16rep1Ribo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,FJRIBO1.trimmed.bam,<NA>,FJ16REP1,<NA>,F johnsoniae culture 2016 replicate 1,<NA>,<NA>,<NA>,<NA>,SRS5373868,SRP221399,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/042/SRR10100142,289827041,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/042/SRR10100142,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/042/SRR10100142,3f501199fbe8b6394e623d835e60695f,UW101,PRJNA564991,Flavobacterium johnsoniae ribosome profiling,<NA>,<NA>,SRA960872,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA573922,SRX6895802,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831194,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174361,43426278,3256970850,SAMN12831194,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,2dayRFPrep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/061/SRR10174361/SRR10174361.fastq.gz,1137243934,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/061/SRR10174361/SRR10174361.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/061/SRR10174361/SRR10174361.fastq.gz,0c04c788112dcf5ee99e805434ea8c96,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,2dayRFPrep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2A_RPF.fq.gz,<NA>,2dayRFP_A,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428379,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/061/SRR10174361,1301713554,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/061/SRR10174361,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/061/SRR10174361,78a3fd8f8ef12b558c63a3d20a7c15e2,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895795,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831208,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174368,26966897,2022517275,SAMN12831208,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0-2 hour embryo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,embRFPrep3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/068/SRR10174368/SRR10174368.fastq.gz,818279124,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/068/SRR10174368/SRR10174368.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/068/SRR10174368/SRR10174368.fastq.gz,6ebe7f0272d951bad443fb71a78eee45,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,embRFPrep3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embC_RPF.fq.gz,<NA>,embryoRFP_C,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428372,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/068/SRR10174368,825510235,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/068/SRR10174368,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/068/SRR10174368,299a6ace18ca2c908592b10eaa39a95b,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA573922,SRX6895794,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831207,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174369,39112396,2933429700,SAMN12831207,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0-2 hour embryo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,embRFPrep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/069/SRR10174369/SRR10174369.fastq.gz,1201812770,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/069/SRR10174369/SRR10174369.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/069/SRR10174369/SRR10174369.fastq.gz,fdd9eda9081075c38cf2e96d6ddde685,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,embRFPrep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embB_RPF.fq.gz,<NA>,embryoRFP_B,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428371,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/069/SRR10174369,1174574621,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/069/SRR10174369,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/069/SRR10174369,afade58d3f475bdaa9768da443752f26,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA573922,SRX6895793,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster 0-2 hour embryo,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831206,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174370,26837661,2012824575,SAMN12831206,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0-2 hour embryo,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,embRFPrep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/070/SRR10174370/SRR10174370.fastq.gz,845547451,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/070/SRR10174370/SRR10174370.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/070/SRR10174370/SRR10174370.fastq.gz,fe090c493b1df93df094c9160b37b779,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,embRFPrep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embA_RPF.fq.gz,<NA>,embryoRFP_A,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428370,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/070/SRR10174370,824411038,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/070/SRR10174370,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/070/SRR10174370,8cdf9d496d7f7a805728012bb48690cb,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA573922,SRX6895788,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831202,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174375,63692380,4776928500,SAMN12831202,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,12dayRFPrep3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/075/SRR10174375/SRR10174375.fastq.gz,1832604053,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/075/SRR10174375/SRR10174375.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/075/SRR10174375/SRR10174375.fastq.gz,26d527a287041d381289fee17dac1272,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,12dayRFPrep3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,12C_RPF.fq.gz,<NA>,12dayRFP_C,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428365,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/075/SRR10174375,1971903071,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/075/SRR10174375,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/075/SRR10174375,95c6b1da3165877a0e508e4224263f72,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895787,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831201,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174376,41691393,3126854475,SAMN12831201,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,12dayRFPrep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/076/SRR10174376/SRR10174376.fastq.gz,1068369380,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/076/SRR10174376/SRR10174376.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/076/SRR10174376/SRR10174376.fastq.gz,d065e74cf80a75522f9acdf68fbc4f4a,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,12dayRFPrep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,12B_RPF.fq.gz,<NA>,12dayRFP_B,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428364,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/076/SRR10174376,1241930685,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/076/SRR10174376,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/076/SRR10174376,cdb34a0fb22f8c66e6ef6773e921dab8,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895786,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831200,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174377,49155765,3686682375,SAMN12831200,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,12dayRFPrep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/077/SRR10174377/SRR10174377.fastq.gz,1376705514,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/077/SRR10174377/SRR10174377.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/077/SRR10174377/SRR10174377.fastq.gz,4530b889373c08a734a1c51d93126453,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,12dayRFPrep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,12A_RPF.fq.gz,<NA>,12dayRFP_A,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428363,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/077/SRR10174377,1501717316,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/077/SRR10174377,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/077/SRR10174377,3b1ec9bddfd973bd6bc51ec73e146ffa,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895785,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831199,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174378,83368394,6252629550,SAMN12831199,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,8dayRFPrep3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/078/SRR10174378/SRR10174378.fastq.gz,2208586144,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/078/SRR10174378/SRR10174378.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/078/SRR10174378/SRR10174378.fastq.gz,f6ec84365ea469fba7544ac446acd569,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,8dayRFPrep3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,8C_RPF.fq.gz,<NA>,8dayRFP_C,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428362,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/078/SRR10174378,2517120039,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/078/SRR10174378,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/078/SRR10174378,632b7de02a0e8e8caf39a26c36d55817,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895784,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831198,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174379,83683932,6276294900,SAMN12831198,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,8dayRFPrep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/079/SRR10174379/SRR10174379.fastq.gz,2185744827,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/079/SRR10174379/SRR10174379.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/079/SRR10174379/SRR10174379.fastq.gz,d09fa1f68958d53b4c7a476e3e308ced,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,8dayRFPrep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,8B_RPF.fq.gz,<NA>,8dayRFP_B,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428361,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/079/SRR10174379,2476644059,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/079/SRR10174379,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/079/SRR10174379,ade521ed7195851ed227a0c2878dc9d3,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895783,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831197,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174380,37912988,2843474100,SAMN12831197,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,8dayRFPrep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/080/SRR10174380/SRR10174380.fastq.gz,1047073037,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/080/SRR10174380/SRR10174380.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/080/SRR10174380/SRR10174380.fastq.gz,bcd3640b1d0a280bbef9823c44072178,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,8dayRFPrep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,8A_RPF.fq.gz,<NA>,8dayRFP_A,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428360,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/080/SRR10174380,1167178559,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/080/SRR10174380,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/080/SRR10174380,ad33965dd6559df174e6fd10c5bf1dc5,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895782,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831196,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174381,<NA>,<NA>,SAMN12831196,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,2dayRFPrep3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,2dayRFPrep3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2C_RPF.fq.gz,<NA>,2dayRFP_C,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428359,SRP223102,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA573922,SRX6895781,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,NextSeq 500 sequencing; Ribosome profiling of Drosophila melanogaster oocyte,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,PCR,SAMN12831195,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,NextSeq 500,SRR10174382,57951230,4346342250,SAMN12831195,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB6341507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,stage 14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,2dayRFPrep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR101/082/SRR10174382/SRR10174382.fastq.gz,1577676975,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/082/SRR10174382/SRR10174382.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR101/082/SRR10174382/SRR10174382.fastq.gz,19e3e58a5b1d8970fd2a31c8a04ed812,2019-11-18,2019-11-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,2dayRFPrep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2B_RPF.fq.gz,<NA>,2dayRFP_B,<NA>,This sample has been submitted by pda|ejgreenblatt on 2019-11-18; Drosophila melanogaster,<NA>,<NA>,<NA>,<NA>,SRS5428358,SRP223102,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR101/082/SRR10174382,1751419566,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/082/SRR10174382,ftp.sra.ebi.ac.uk/vol1/srr/SRR101/082/SRR10174382,2da97048af9e67ec58c7b0420b22c9ab,Oregon R,PRJNA573922,Ribosome profiling and mRNA sequencing of Drosophila oocytes during aging,<NA>,<NA>,SRA967518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,mature oocyte,<NA>\nPRJNA577942,SRX7007420,Illumina HiSeq 2500 sequencing; GSM4125802: Replicate 1 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125802: Replicate 1 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041939,Replicate 1 centrifugation harvesting ribosome profiling,Illumina HiSeq 2500,SRR10294592,24325319,1629796373,SAMN13041939,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125802,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/092/SRR10294592/SRR10294592.fastq.gz,837108859,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/092/SRR10294592/SRR10294592.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/092/SRR10294592/SRR10294592.fastq.gz,87c194114c7a88d3b246ca87027fb9b6,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125802_r1,<NA>,GSM4125802,<NA>,Replicate 1 centrifugation harvesting ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528590,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/092/SRR10294592,772511567,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/092/SRR10294592,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/092/SRR10294592,6597bc5588242a940f1705c1ba404590,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007421,Illumina HiSeq 2500 sequencing; GSM4125803: Replicate 2 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125803: Replicate 2 centrifugation harvesting ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041938,Replicate 2 centrifugation harvesting ribosome profiling,Illumina HiSeq 2500,SRR10294593,108269604,7037524260,SAMN13041938,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125803,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/093/SRR10294593/SRR10294593.fastq.gz,3329299794,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/093/SRR10294593/SRR10294593.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/093/SRR10294593/SRR10294593.fastq.gz,dc6c2962bc8f56cc09e919c85c3f265f,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125803_r1,<NA>,GSM4125803,<NA>,Replicate 2 centrifugation harvesting ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528591,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/093/SRR10294593,2891568352,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/093/SRR10294593,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/093/SRR10294593,27b92bd5b0b2f4d8209b20395914952d,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007422,Illumina HiSeq 2500 sequencing; GSM4125804: Replicate 1 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125804: Replicate 1 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041936,Replicate 1 flash freeze harvesting no drugs ribosome profiling,Illumina HiSeq 2500,SRR10294594,4480382,448038200,SAMN13041936,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125804,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/094/SRR10294594/SRR10294594.fastq.gz,218040014,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/094/SRR10294594/SRR10294594.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/094/SRR10294594/SRR10294594.fastq.gz,a2ca6eb8b55cfed4c372c4652c436a13,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125804_r1,<NA>,GSM4125804,<NA>,Replicate 1 flash freeze harvesting no drugs ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528592,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/094/SRR10294594,215669196,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/094/SRR10294594,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/094/SRR10294594,e9c66cf6ea39528fa2fa5865b3ce402a,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007423,Illumina HiSeq 2500 sequencing; GSM4125805: Replicate 2 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125805: Replicate 2 flash freeze harvesting no drugs ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041934,Replicate 2 flash freeze harvesting no drugs ribosome profiling,Illumina HiSeq 2500,SRR10294595,8990526,449526300,SAMN13041934,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125805,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/095/SRR10294595/SRR10294595.fastq.gz,378317488,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/095/SRR10294595/SRR10294595.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/095/SRR10294595/SRR10294595.fastq.gz,fee65426e83222b3ebf26b45fe0c0b3d,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125805_r1,<NA>,GSM4125805,<NA>,Replicate 2 flash freeze harvesting no drugs ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528593,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/095/SRR10294595,298116543,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/095/SRR10294595,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/095/SRR10294595,773ee5a6a8bf9d1f58c4b8f1f89f0e21,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007424,Illumina HiSeq 2500 sequencing; GSM4125806: Flash freeze harvesting with anisomycin ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125806: Flash freeze harvesting with anisomycin ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041933,Flash freeze harvesting with anisomycin ribosome profiling,Illumina HiSeq 2500,SRR10294596,9421109,471055450,SAMN13041933,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125806,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/096/SRR10294596/SRR10294596.fastq.gz,332152110,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/096/SRR10294596/SRR10294596.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/096/SRR10294596/SRR10294596.fastq.gz,1aaad1f95341ef4e2170cd4b91977791,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125806_r1,<NA>,GSM4125806,<NA>,Flash freeze harvesting with anisomycin ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528594,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/096/SRR10294596,275419563,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/096/SRR10294596,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/096/SRR10294596,f9b61ef9d5ecfdb0b5ac48a2b829a72b,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007425,Illumina HiSeq 2500 sequencing; GSM4125807: Flash freeze harvesting with harringtonine ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125807: Flash freeze harvesting with harringtonine ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041930,Flash freeze harvesting with harringtonine ribosome profiling,Illumina HiSeq 2500,SRR10294597,16070885,1607088500,SAMN13041930,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/097/SRR10294597/SRR10294597.fastq.gz,717049123,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/097/SRR10294597/SRR10294597.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/097/SRR10294597/SRR10294597.fastq.gz,9cedd150011cab195100f021f486511a,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125807_r1,<NA>,GSM4125807,<NA>,Flash freeze harvesting with harringtonine ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528595,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/097/SRR10294597,762841375,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/097/SRR10294597,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/097/SRR10294597,1fd17e947abb5b416622d14a30a7823f,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007426,Illumina HiSeq 2500 sequencing; GSM4125808: Flash freeze harvesting with serine hydroxamate ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125808: Flash freeze harvesting with serine hydroxamate ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041929,Flash freeze harvesting with serine hydroxamate ribosome profiling,Illumina HiSeq 2500,SRR10294598,15432004,1543200400,SAMN13041929,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/098/SRR10294598/SRR10294598.fastq.gz,714294675,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/098/SRR10294598/SRR10294598.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/098/SRR10294598/SRR10294598.fastq.gz,071b3efe861962285e40a2874ed762e3,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125808_r1,<NA>,GSM4125808,<NA>,Flash freeze harvesting with serine hydroxamate ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528596,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/098/SRR10294598,749452044,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/098/SRR10294598,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/098/SRR10294598,b35372c57a592d282e89e064e1df5728,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA577942,SRX7007428,Illumina HiSeq 2500 sequencing; GSM4125810: Total RNA treated with MNase ribosome profiling; Haloferax volcanii DS2; OTHER,Illumina HiSeq 2500 sequencing; GSM4125810: Total RNA treated with MNase ribosome profiling; Haloferax volcanii DS2; OTHER,309800,Haloferax volcanii DS2,OTHER,TRANSCRIPTOMIC,other,SAMN13041923,Total RNA treated with MNase ribosome profiling,Illumina HiSeq 2500,SRR10294600,8365069,418253450,SAMN13041923,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4125810,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR102/000/SRR10294600/SRR10294600.fastq.gz,312931794,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/000/SRR10294600/SRR10294600.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR102/000/SRR10294600/SRR10294600.fastq.gz,507480079fa189b9b64787eeefb46b55,2020-04-30,2020-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4125810_r1,<NA>,GSM4125810,<NA>,Total RNA treated with MNase ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS5528598,SRP225954,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR102/000/SRR10294600,274797029,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/000/SRR10294600,ftp.sra.ebi.ac.uk/vol1/srr/SRR102/000/SRR10294600,202b539feecbbcc49e8e23fab0179676,<NA>,GSE138990,\"Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution\",<NA>,<NA>,SRA980319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA214730,SRX384923,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401351,Mixed parental selected mRNA fragments,Illumina HiSeq 2000,SRR1040263,112580832,4052909952,SAMN02401351,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MIXED_PARENTAL_MRNA_REP1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/003/SRR1040263/SRR1040263.fastq.gz,3870534856,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/003/SRR1040263/SRR1040263.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/003/SRR1040263/SRR1040263.fastq.gz,8197214be236ca17fc4a40936cc85fed,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MIXED_PARENTAL_MRNA_REP1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MIXED_PARENTAL_MRNA_REP1,<NA>,MIXED_PARENTAL_MRNA_REP1,<NA>,Poly-A selected mRNA fragments isolated from haploid Saccharomyces cerevisiae and Saccharomyces paradoxus using the riboprofiling method,<NA>,<NA>,<NA>,<NA>,SRS509098,SRP028614,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/003/SRR1040263,2676137205,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/003/SRR1040263,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/003/SRR1040263,b56bd02f83515ab4551889fdce739cc8,Saccharomyces cerevisiae BY4176 &amp; Saccharomyces paradoxus CBS432,PRJNA214730,Ribosome profiling of interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus.,<NA>,<NA>,SRA097097,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA214730,SRX385099,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome footprint fraction replicate 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome footprint fraction replicate 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401352,Mixed parental ribosome protected fragments replicate 1,Illumina HiSeq 2000,SRR1040415,140321514,5051574504,SAMN02401352,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MIXED_PARENTAL_RIBOFOOTPRINT_REP1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/005/SRR1040415/SRR1040415.fastq.gz,3963213889,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/005/SRR1040415/SRR1040415.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/005/SRR1040415/SRR1040415.fastq.gz,06950c9aa848dedc427216fcc46cf0de,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MIXED_PARENTAL_RIBOFOOTPRINT_REP1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MIXED_PARENTAL_RIBOFOOTPRINT_REP1,<NA>,MIXED_PARENTAL_RIBOFOOTPRINT_REP1,<NA>,Ribosome protected RNA fragments isolated from Saccharomyces cerevisiae and Saccharomyces paradoxus using the riboprofiling method,<NA>,<NA>,<NA>,<NA>,SRS509272,SRP028614,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/005/SRR1040415,6078268348,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/005/SRR1040415,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/005/SRR1040415,a7a98e2ba7d05e26285e988b28a9d226,Saccharomyces cerevisiae BY4176 &amp; Saccharomyces paradoxus CBS432,PRJNA214730,Ribosome profiling of interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus.,<NA>,<NA>,SRA097097,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA214730,SRX385185,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 1,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 1,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401353,Mixed parental ribosome protected fragments replicate 2 lane 1,Illumina HiSeq 2000,SRR1040423,130172032,4686193152,SAMN02401353,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MIXED_PARENTAL_RIBOFOOTPRINT_REP2_1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/003/SRR1040423/SRR1040423.fastq.gz,3472375869,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/003/SRR1040423/SRR1040423.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/003/SRR1040423/SRR1040423.fastq.gz,6fe9f61f0afd13d418982f3c1832291c,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MIXED_PARENTAL_RIBOFOOTPRINT_REP2_1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MIXED_PARENTAL_MRNA_REP2_1,<NA>,MIXED_PARENTAL_RIBOFOOTPRINT_REP2_1,<NA>,Ribosome protected RNA fragments isolated from Saccharomyces cerevisiae and Saccharomyces paradoxus using the riboprofiling method,<NA>,<NA>,<NA>,<NA>,SRS509342,SRP028614,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/003/SRR1040423,2915072772,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/003/SRR1040423,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/003/SRR1040423,7ee5ed087602f266c4bfc10b112511c6,Saccharomyces cerevisiae BY4176 &amp; Saccharomyces paradoxus CBS432,PRJNA214730,Ribosome profiling of interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus.,<NA>,<NA>,SRA097097,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA214730,SRX385187,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 2,Illumina HiSeq 2000 sequencing; Saccharomyces cerevisiae and S. paradoxus parental Ribosome profiling ribosome mRNA fraction replicate 2 - 2,1306155,mixed culture,OTHER,TRANSCRIPTOMIC,unspecified,SAMN02401354,Mixed parental ribosome protected fragments replicate 2 lane 2,Illumina HiSeq 2000,SRR1040427,171400626,6170422536,SAMN02401354,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MIXED_PARENTAL_MRNA_REP2_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/007/SRR1040427/SRR1040427.fastq.gz,4905049969,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/007/SRR1040427/SRR1040427.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/007/SRR1040427/SRR1040427.fastq.gz,a30721ec56a96602c5cfd14565530e6b,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MIXED_PARENTAL_MRNA_REP2_2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MIXED_PARENTAL_MRNA_REP2_2,<NA>,MIXED_PARENTAL_RIBOFOOTPRINT_REP2_2,<NA>,Ribosome protected RNA fragments isolated from Saccharomyces cerevisiae and Saccharomyces paradoxus using the riboprofiling method,<NA>,<NA>,<NA>,<NA>,SRS509345,SRP028614,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/007/SRR1040427,4061319353,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/007/SRR1040427,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/007/SRR1040427,e9f9f7e8a3260c3b3675596fa63b2f88,Saccharomyces cerevisiae BY4176 &amp; Saccharomyces paradoxus CBS432,PRJNA214730,Ribosome profiling of interspecific hybrids of Saccharomyces cerevisiae and S. paradoxus.,<NA>,<NA>,SRA097097,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA230610,SRX387034,Illumina Genome Analyzer II sequencing; GSM1279707: Ribosome Profiling with Control siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279707: Ribosome Profiling with Control siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435722,Ribosome Profiling with Control siRNA,Illumina Genome Analyzer II,SRR1042900,21277427,893651934,SAMN02435722,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1279707,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/000/SRR1042900/SRR1042900.fastq.gz,592549800,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/000/SRR1042900/SRR1042900.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/000/SRR1042900/SRR1042900.fastq.gz,4c51f3881fd502a1093bb897ef18d829,2014-11-11,2014-11-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1279707_r1,<NA>,GSM1279707,<NA>,Ribosome Profiling with Control siRNA,<NA>,<NA>,<NA>,<NA>,SRS510970,SRP033503,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/000/SRR1042900,481755276,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/000/SRR1042900,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/000/SRR1042900,78f88fd41a33b2bb25cb9dca56b8ce69,<NA>,GSE52976,Integrative AUF1 PAR-CLIP analysis uncovers AUF1 roles in translation and genome integrity (Ribosome),<NA>,<NA>,SRA115272,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA230610,SRX387035,Illumina Genome Analyzer II sequencing; GSM1279708: Ribosome Profiling with AUF1 siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279708: Ribosome Profiling with AUF1 siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435724,Ribosome Profiling with AUF1 siRNA,Illumina Genome Analyzer II,SRR1042901,22678915,952514430,SAMN02435724,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1279708,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/001/SRR1042901/SRR1042901.fastq.gz,623476413,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/001/SRR1042901/SRR1042901.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/001/SRR1042901/SRR1042901.fastq.gz,28f26c19e41e0ab74ee06eaa4a32882a,2014-11-11,2014-11-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-02-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1279708_r1,<NA>,GSM1279708,<NA>,Ribosome Profiling with AUF1 siRNA,<NA>,<NA>,<NA>,<NA>,SRS510969,SRP033503,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/001/SRR1042901,506359232,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/001/SRR1042901,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/001/SRR1042901,7805b7b7680a7fe485fec77bc8806a8a,<NA>,GSE52976,Integrative AUF1 PAR-CLIP analysis uncovers AUF1 roles in translation and genome integrity (Ribosome),<NA>,<NA>,SRA115272,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA230610,SRX387036,Illumina Genome Analyzer II sequencing; GSM1279709: Ribosome Profiling with HuR siRNA; Homo sapiens; OTHER,Illumina Genome Analyzer II sequencing; GSM1279709: Ribosome Profiling with HuR siRNA; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02435723,Ribosome Profiling with HuR siRNA,Illumina Genome Analyzer II,SRR1042902,3818427,160373934,SAMN02435723,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1279709,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR104/002/SRR1042902/SRR1042902.fastq.gz,98293471,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/002/SRR1042902/SRR1042902.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR104/002/SRR1042902/SRR1042902.fastq.gz,a963d90d02aeb32f01f3e9385b5bf0c0,2014-11-11,2014-11-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-13,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1279709_r1,<NA>,GSM1279709,<NA>,Ribosome Profiling with HuR siRNA,<NA>,<NA>,<NA>,<NA>,SRS510971,SRP033503,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR104/002/SRR1042902,79459938,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/002/SRR1042902,ftp.sra.ebi.ac.uk/vol1/srr/SRR104/002/SRR1042902,1b5d68ba8963da6a6de0a09e0363401b,<NA>,GSE52976,Integrative AUF1 PAR-CLIP analysis uncovers AUF1 roles in translation and genome integrity (Ribosome),<NA>,<NA>,SRA115272,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067765,30562326,1528116300,SAMN02566834,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300279,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/005/SRR1067765/SRR1067765.fastq.gz,1058971446,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/005/SRR1067765/SRR1067765.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/005/SRR1067765/SRR1067765.fastq.gz,fba322840f6ceb7867e3a070e005317b,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300279_r1,<NA>,GSM1300279,<NA>,ribosome profiling in rich defined media,<NA>,<NA>,<NA>,<NA>,SRS523651,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/005/SRR1067765,1032820006,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/005/SRR1067765,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/005/SRR1067765,ca26d398a842d304d013e51d955cd6c0,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067766,163797786,8353687086,SAMN02566834,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300279,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/006/SRR1067766/SRR1067766.fastq.gz,6668841696,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/006/SRR1067766/SRR1067766.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/006/SRR1067766/SRR1067766.fastq.gz,c8fd7acc0e3177b06340ce3f4b08e671,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300279_r2,<NA>,GSM1300279,<NA>,ribosome profiling in rich defined media,<NA>,<NA>,<NA>,<NA>,SRS523651,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/006/SRR1067766,5748538931,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/006/SRR1067766,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/006/SRR1067766,6409deeec23a1d01fba0ae8ee4cf724d,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067767,60601845,3090694095,SAMN02566834,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300279,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/007/SRR1067767/SRR1067767.fastq.gz,2268673872,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/007/SRR1067767/SRR1067767.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/007/SRR1067767/SRR1067767.fastq.gz,f089f802b0897137e5acfee47c8256dc,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300279_r3,<NA>,GSM1300279,<NA>,ribosome profiling in rich defined media,<NA>,<NA>,<NA>,<NA>,SRS523651,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/007/SRR1067767,2017256040,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/007/SRR1067767,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/007/SRR1067767,a999ed6237277d05c0bb374624f26840,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403935,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM1300279: ribosome profiling in rich defined media; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566834,ribosome profiling in rich defined media,Illumina HiSeq 2000,SRR1067768,141202340,7201319340,SAMN02566834,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300279,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/008/SRR1067768/SRR1067768.fastq.gz,5579630200,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/008/SRR1067768/SRR1067768.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/008/SRR1067768/SRR1067768.fastq.gz,850b63898203cb1d40d87b360a6aa7fb,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300279_r4,<NA>,GSM1300279,<NA>,ribosome profiling in rich defined media,<NA>,<NA>,<NA>,<NA>,SRS523651,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/008/SRR1067768,4952004818,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/008/SRR1067768,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/008/SRR1067768,58e9f654d9a8e7964bfc588b1fdc6b28,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403936,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566832,ribosome profiling in minimal media 1,Illumina HiSeq 2500,SRR1067769,88792279,4528406229,SAMN02566832,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300280,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/009/SRR1067769/SRR1067769.fastq.gz,3434700136,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/009/SRR1067769/SRR1067769.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/009/SRR1067769/SRR1067769.fastq.gz,cdcc55a7f051e4b0e242ad0c30ff026f,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300280_r1,<NA>,GSM1300280,<NA>,ribosome profiling in minimal media 1,<NA>,<NA>,<NA>,<NA>,SRS523650,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/009/SRR1067769,2984076037,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/009/SRR1067769,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/009/SRR1067769,d812d0e152f898c0b4e2e72661e8cdc8,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403936,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300280: ribosome profiling in minimal media 1; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566832,ribosome profiling in minimal media 1,Illumina HiSeq 2500,SRR1067770,41605070,2121858570,SAMN02566832,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300280,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/000/SRR1067770/SRR1067770.fastq.gz,1659315602,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/000/SRR1067770/SRR1067770.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/000/SRR1067770/SRR1067770.fastq.gz,abd86791daf1c90f5febee137cf6534e,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-04,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300280_r2,<NA>,GSM1300280,<NA>,ribosome profiling in minimal media 1,<NA>,<NA>,<NA>,<NA>,SRS523650,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/000/SRR1067770,1425190871,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/000/SRR1067770,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/000/SRR1067770,ebd29759719b19583b861af731460a07,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403937,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566833,ribosome profiling in minimal media 2,Illumina HiSeq 2500,SRR1067771,65430349,3336947799,SAMN02566833,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300281,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/001/SRR1067771/SRR1067771.fastq.gz,2396666373,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/001/SRR1067771/SRR1067771.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/001/SRR1067771/SRR1067771.fastq.gz,90b63941a2fd28d359ca57fb2008c372,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300281_r1,<NA>,GSM1300281,<NA>,ribosome profiling in minimal media 2,<NA>,<NA>,<NA>,<NA>,SRS523652,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/001/SRR1067771,2103275630,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/001/SRR1067771,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/001/SRR1067771,fa26888b73ffce93d05a40449f14d261,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA232843,SRX403937,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,Illumina HiSeq 2500 sequencing; GSM1300281: ribosome profiling in minimal media 2; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN02566833,ribosome profiling in minimal media 2,Illumina HiSeq 2500,SRR1067772,70786149,3610093599,SAMN02566833,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1300281,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR106/002/SRR1067772/SRR1067772.fastq.gz,3049549873,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/002/SRR1067772/SRR1067772.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR106/002/SRR1067772/SRR1067772.fastq.gz,e1f4d52b542feb35b5ebe5cff22d8a8a,2014-04-30,2014-04-30,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1300281_r2,<NA>,GSM1300281,<NA>,ribosome profiling in minimal media 2,<NA>,<NA>,<NA>,<NA>,SRS523652,SRP034871,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR106/002/SRR1067772,2594360889,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/002/SRR1067772,ftp.sra.ebi.ac.uk/vol1/srr/SRR106/002/SRR1067772,4412797a9bdc60b5ee881de8dd2cce77,K-12,GSE53767,Absolute quantification of protein production reveals principles underlying protein synthesis rates,<NA>,MG1655,SRA122790,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA602917,SRX7625186,NextSeq 500 sequencing; GSM4282352: Ribosome profiling_sgABCE1-1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282352: Ribosome profiling_sgABCE1-1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910616,Ribosome profiling_sgABCE1-1,NextSeq 500,SRR10959087,63652500,4901242500,SAMN13910616,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,NMD reporter,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4282352,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR109/087/SRR10959087/SRR10959087.fastq.gz,1647586989,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/087/SRR10959087/SRR10959087.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/087/SRR10959087/SRR10959087.fastq.gz,a44812f3ca43c60ee47bba44d28fc63f,2020-07-15,2020-07-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4282352_r1,<NA>,GSM4282352,<NA>,Ribosome profiling_sgABCE1-1,<NA>,<NA>,<NA>,<NA>,SRS6057079,SRP244436,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR109/087/SRR10959087,1781541282,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/087/SRR10959087,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/087/SRR10959087,f4cde221ca8336c49ff2447c41dc8803,<NA>,GSE144163,Ribosome profiling of ABCE1-knockout cells,<NA>,<NA>,SRA1030824,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA602917,SRX7625187,NextSeq 500 sequencing; GSM4282353: Ribosome profiling_sgABCE1-2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282353: Ribosome profiling_sgABCE1-2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910615,Ribosome profiling_sgABCE1-2,NextSeq 500,SRR10959088,67271269,5179887713,SAMN13910615,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,NMD reporter,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4282353,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR109/088/SRR10959088/SRR10959088.fastq.gz,1722000071,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/088/SRR10959088/SRR10959088.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/088/SRR10959088/SRR10959088.fastq.gz,f635e76107060c0bc8a826d8baad8551,2020-07-15,2020-07-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4282353_r1,<NA>,GSM4282353,<NA>,Ribosome profiling_sgABCE1-2,<NA>,<NA>,<NA>,<NA>,SRS6057080,SRP244436,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR109/088/SRR10959088,1858667672,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/088/SRR10959088,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/088/SRR10959088,0a97d095d5fd482c749beb753253b286,<NA>,GSE144163,Ribosome profiling of ABCE1-knockout cells,<NA>,<NA>,SRA1030824,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA602917,SRX7625188,NextSeq 500 sequencing; GSM4282354: Ribosome profiling_sgNT1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282354: Ribosome profiling_sgNT1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910614,Ribosome profiling_sgNT1,NextSeq 500,SRR10959089,91168220,7019952940,SAMN13910614,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,NMD reporter,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4282354,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR109/089/SRR10959089/SRR10959089.fastq.gz,2307087059,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/089/SRR10959089/SRR10959089.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/089/SRR10959089/SRR10959089.fastq.gz,0cd80c29c21f724a095b2b32ce5a2371,2020-07-15,2020-07-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4282354_r1,<NA>,GSM4282354,<NA>,Ribosome profiling_sgNT1,<NA>,<NA>,<NA>,<NA>,SRS6057081,SRP244436,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR109/089/SRR10959089,2484501126,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/089/SRR10959089,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/089/SRR10959089,ea39d8f9116a752efca2f04202afda91,<NA>,GSE144163,Ribosome profiling of ABCE1-knockout cells,<NA>,<NA>,SRA1030824,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA602917,SRX7625189,NextSeq 500 sequencing; GSM4282355: Ribosome profiling_sgNT2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM4282355: Ribosome profiling_sgNT2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN13910613,Ribosome profiling_sgNT2,NextSeq 500,SRR10959090,104512107,8047432239,SAMN13910613,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,NMD reporter,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4282355,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR109/090/SRR10959090/SRR10959090.fastq.gz,2643374487,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/090/SRR10959090/SRR10959090.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR109/090/SRR10959090/SRR10959090.fastq.gz,36fd5371dee2742845b854afb2bc7e0f,2020-07-15,2020-07-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4282355_r1,<NA>,GSM4282355,<NA>,Ribosome profiling_sgNT2,<NA>,<NA>,<NA>,<NA>,SRS6057082,SRP244436,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR109/090/SRR10959090,2854913289,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/090/SRR10959090,ftp.sra.ebi.ac.uk/vol1/srr/SRR109/090/SRR10959090,389657990b60ba78f281e298d50e09cb,<NA>,GSE144163,Ribosome profiling of ABCE1-knockout cells,<NA>,<NA>,SRA1030824,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA609842,SRX7829328,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,591946,Escherichia coli LF82,RNA-Seq,OTHER,other,SAMN14260632,LF82-anaerobic,Illumina HiSeq 2500,SRR11217089,450754,10867843,SAMN14260632,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB7077949,<NA>,ARLETTE DARFEUILLE-MICHAUD,1998-01-01,<NA>,<NA>,France: Clermont-Ferrand,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RIBO-sample2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR112/089/SRR11217089/SRR11217089.fastq.gz,5440858,ftp.sra.ebi.ac.uk/vol1/fastq/SRR112/089/SRR11217089/SRR11217089.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR112/089/SRR11217089/SRR11217089.fastq.gz,43a18a69945bdd5c22c29b9d3f5d109c,2020-03-04,2020-03-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,Human colon,2020-03-04,45.770668,SINGLE,RIBO-sample2,45.770668 N 3.087886 E,3.087886,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RIBO-sample2.fastq,<NA>,Anaerobic-growth,<NA>,LF82-anaerobic,<NA>,<NA>,<NA>,<NA>,SRS6240068,SRP251336,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR112/089/SRR11217089,4867471,ftp.sra.ebi.ac.uk/vol1/srr/SRR112/089/SRR11217089,ftp.sra.ebi.ac.uk/vol1/srr/SRR112/089/SRR11217089,9c73c56d32f15f8322c5d8c9f83b2b58,LF82,PRJNA609842,Novel operlapping gene pop,<NA>,<NA>,SRA1050320,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA609842,SRX7829327,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,Illumina HiSeq 2500 sequencing; ribosome profiling of E. coli LF82,591946,Escherichia coli LF82,RNA-Seq,OTHER,other,SAMN14260632,LF82-anaerobic,Illumina HiSeq 2500,SRR11217090,89211,1982957,SAMN14260632,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB7077949,<NA>,ARLETTE DARFEUILLE-MICHAUD,1998-01-01,<NA>,<NA>,France: Clermont-Ferrand,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RIBO-sample1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR112/090/SRR11217090/SRR11217090.fastq.gz,1064502,ftp.sra.ebi.ac.uk/vol1/fastq/SRR112/090/SRR11217090/SRR11217090.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR112/090/SRR11217090/SRR11217090.fastq.gz,4c6ca7d2d4013dcacf7a7d2098e4e76f,2020-03-04,2020-03-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,Human colon,2020-03-04,45.770668,SINGLE,RIBO-sample1,45.770668 N 3.087886 E,3.087886,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RIBO-sample1.fastq,<NA>,Anaerobic-growth,<NA>,LF82-anaerobic,<NA>,<NA>,<NA>,<NA>,SRS6240068,SRP251336,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR112/090/SRR11217090,1032112,ftp.sra.ebi.ac.uk/vol1/srr/SRR112/090/SRR11217090,ftp.sra.ebi.ac.uk/vol1/srr/SRR112/090/SRR11217090,9bfef07836a2f9be2745b38baede5ecb,LF82,PRJNA609842,Novel operlapping gene pop,<NA>,<NA>,SRA1050320,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA237963,SRX469443,Illumina HiSeq 2000 sequencing; GSM1326110: M2G Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,Illumina HiSeq 2000 sequencing; GSM1326110: M2G Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,565050,Caulobacter vibrioides NA1000,OTHER,TRANSCRIPTOMIC,other,SAMN02640191,M2G Ribosome profiling,Illumina HiSeq 2000,SRR1167750,2656902,84987700,SAMN02640191,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1326110,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR116/000/SRR1167750/SRR1167750.fastq.gz,79514855,ftp.sra.ebi.ac.uk/vol1/fastq/SRR116/000/SRR1167750/SRR1167750.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR116/000/SRR1167750/SRR1167750.fastq.gz,67cb0b43bea2c32eaf77233b6bd51755,2014-06-16,2014-06-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1326110_r1,<NA>,GSM1326110,<NA>,M2G Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS556730,SRP037582,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR116/000/SRR1167750,65799692,ftp.sra.ebi.ac.uk/vol1/srr/SRR116/000/SRR1167750,ftp.sra.ebi.ac.uk/vol1/srr/SRR116/000/SRR1167750,c2a6ec98af292bab388d3908bd95a8d8,NA1000,GSE54883,The coding and noncoding architecture of the Caulobacter crescentus genome,<NA>,<NA>,SRA139242,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA237963,SRX469444,Illumina HiSeq 2000 sequencing; GSM1326111: PYE Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,Illumina HiSeq 2000 sequencing; GSM1326111: PYE Ribosome profiling; Caulobacter vibrioides NA1000; OTHER,565050,Caulobacter vibrioides NA1000,OTHER,TRANSCRIPTOMIC,other,SAMN02640188,PYE Ribosome profiling,Illumina HiSeq 2000,SRR1167751,4274091,130370413,SAMN02640188,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1326111,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR116/001/SRR1167751/SRR1167751.fastq.gz,136160262,ftp.sra.ebi.ac.uk/vol1/fastq/SRR116/001/SRR1167751/SRR1167751.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR116/001/SRR1167751/SRR1167751.fastq.gz,fce5a1e38ac07f7fa216119aa5354c37,2014-06-16,2014-06-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1326111_r1,<NA>,GSM1326111,<NA>,PYE Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS556731,SRP037582,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR116/001/SRR1167751,106133088,ftp.sra.ebi.ac.uk/vol1/srr/SRR116/001/SRR1167751,ftp.sra.ebi.ac.uk/vol1/srr/SRR116/001/SRR1167751,b7ce70dd06bc6eebaff8494d9d7ec9ac,NA1000,GSE54883,The coding and noncoding architecture of the Caulobacter crescentus genome,<NA>,<NA>,SRA139242,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA633047,SRX8346823,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931307,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794832,10913971,818547825,SAMN14931307,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep1 mock input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/032/SRR11794832/SRR11794832.fastq.gz,481780696,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/032/SRR11794832/SRR11794832.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/032/SRR11794832/SRR11794832.fastq.gz,3f476e859c079b0312b5a999301d776b,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep1 mock input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep1_mock_input.fastq,<NA>,WT_rep1_mock_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663548,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/032/SRR11794832,663515279,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/032/SRR11794832,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/032/SRR11794832,dd32b04539b1c10776fa6e87c65b0a8f,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346822,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931307,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794833,13852845,1038963375,SAMN14931307,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep1 mock RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/033/SRR11794833/SRR11794833.fastq.gz,554138808,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/033/SRR11794833/SRR11794833.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/033/SRR11794833/SRR11794833.fastq.gz,e4180bf66e2abbca67dc145d6ce4448a,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep1 mock RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep1_mock_RPF.fastq,<NA>,WT_rep1_mock_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663548,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/033/SRR11794833,840047808,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/033/SRR11794833,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/033/SRR11794833,654914c8b322e312881e8c005f3bccac,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346821,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931306,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794834,8940111,670508325,SAMN14931306,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep2 infection input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/034/SRR11794834/SRR11794834.fastq.gz,385796397,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/034/SRR11794834/SRR11794834.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/034/SRR11794834/SRR11794834.fastq.gz,121baeaa7c7eec9d304462469cbf3102,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep2 infection input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep2_infection_input.fastq,<NA>,WT_rep2_infection_ribpro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663547,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/034/SRR11794834,541170258,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/034/SRR11794834,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/034/SRR11794834,ba4e3732e51549fb11f2d97dc0c76d33,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346820,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931306,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794835,15366865,1152514875,SAMN14931306,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep2 infection RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/035/SRR11794835/SRR11794835.fastq.gz,546026869,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/035/SRR11794835/SRR11794835.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/035/SRR11794835/SRR11794835.fastq.gz,ff26fe972b50a4520568ce268c8ce02d,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep2 infection RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep2_infection_RPF.fastq,<NA>,WT_rep2_infection_ribpro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663547,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/035/SRR11794835,935483368,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/035/SRR11794835,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/035/SRR11794835,7b15e32615b08f2d58693af46f6e011a,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346819,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931305,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794836,11605004,870375300,SAMN14931305,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep1 infection input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/036/SRR11794836/SRR11794836.fastq.gz,500990935,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/036/SRR11794836/SRR11794836.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/036/SRR11794836/SRR11794836.fastq.gz,db1b207d45d7d55016f9561e0c932212,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep1 infection input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep1_infection_input.fastq,<NA>,WT_rep1_infection_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663546,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/036/SRR11794836,702441562,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/036/SRR11794836,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/036/SRR11794836,a61691157f03fd45e1d09f652179e049,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346818,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931305,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794837,23196621,1739746575,SAMN14931305,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep1 infection RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/037/SRR11794837/SRR11794837.fastq.gz,882120383,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/037/SRR11794837/SRR11794837.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/037/SRR11794837/SRR11794837.fastq.gz,623099b699a5d72e50fcb3bae80d40c3,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep1 infection RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep1_infection_RPF.fastq,<NA>,WT_rep1_infection_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663546,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/037/SRR11794837,1416899783,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/037/SRR11794837,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/037/SRR11794837,acd934b2977695310083b01123d93a99,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346815,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931312,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794840,9198727,689904525,SAMN14931312,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep2 mock input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/040/SRR11794840/SRR11794840.fastq.gz,377251410,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/040/SRR11794840/SRR11794840.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/040/SRR11794840/SRR11794840.fastq.gz,087ca9ac38d1bb64305f19275e58f5f1,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep2 mock input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep2_mock_input.fastq,<NA>,KO_rep2_mock_ribopro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663544,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/040/SRR11794840,559438166,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/040/SRR11794840,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/040/SRR11794840,feef0954f7a3e54c6779d1c1ed4dc086,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346814,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931312,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794841,17944493,1345836975,SAMN14931312,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep2 mock RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/041/SRR11794841/SRR11794841.fastq.gz,673468102,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/041/SRR11794841/SRR11794841.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/041/SRR11794841/SRR11794841.fastq.gz,f422219091e4d1efb47268ed56d47e25,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep2 mock RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep2_mock_RPF.fastq,<NA>,KO_rep2_mock_ribopro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663544,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/041/SRR11794841,1093140687,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/041/SRR11794841,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/041/SRR11794841,26ace3d92335d3a570afa595d43633c2,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346813,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931311,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794842,8435062,632629650,SAMN14931311,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep1 mock input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/042/SRR11794842/SRR11794842.fastq.gz,365270843,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/042/SRR11794842/SRR11794842.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/042/SRR11794842/SRR11794842.fastq.gz,c8eee467951a0c344f6497c5247203a0,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep1 mock input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep1_mock_input.fastq,<NA>,KO_rep1_mock_ribpro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663543,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/042/SRR11794842,513634969,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/042/SRR11794842,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/042/SRR11794842,b7fc2492be3be175b1eff530d0672b64,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346812,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of mock infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931311,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794843,21767715,1632578625,SAMN14931311,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep1 mock RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/043/SRR11794843/SRR11794843.fastq.gz,829527474,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/043/SRR11794843/SRR11794843.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/043/SRR11794843/SRR11794843.fastq.gz,0747d145d6c2e38ee915b8643031e905,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep1 mock RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep1_mock_RPF.fastq,<NA>,KO_rep1_mock_ribpro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663543,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/043/SRR11794843,1338111427,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/043/SRR11794843,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/043/SRR11794843,a6f957ab1c2b06abb764ac1df68d6acf,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346811,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KOWT cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KOWT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931310,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794844,11905053,892878975,SAMN14931310,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep2 infection input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/044/SRR11794844/SRR11794844.fastq.gz,506974295,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/044/SRR11794844/SRR11794844.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/044/SRR11794844/SRR11794844.fastq.gz,0f6972980fc96a7aca31f47e09f40d5d,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep2 infection input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep2_infection_input.fastq,<NA>,KO_rep2_infection_ribpro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663542,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/044/SRR11794844,728353320,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/044/SRR11794844,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/044/SRR11794844,91e82130b4ce308d33b73db8aac59968,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346810,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931310,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794845,20046166,1503462450,SAMN14931310,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep2 infection RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/045/SRR11794845/SRR11794845.fastq.gz,728074689,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/045/SRR11794845/SRR11794845.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/045/SRR11794845/SRR11794845.fastq.gz,b545a1157d3702a36747a17e00f8d322,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep2 infection RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep2_infection_RPF.fastq,<NA>,KO_rep2_infection_ribpro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663542,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/045/SRR11794845,1224656296,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/045/SRR11794845,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/045/SRR11794845,5dddcf201ecd3e7c2efd948c1c19496f,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346809,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling input of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931309,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794846,7457075,559280625,SAMN14931309,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep1 infection input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/046/SRR11794846/SRR11794846.fastq.gz,324326738,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/046/SRR11794846/SRR11794846.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/046/SRR11794846/SRR11794846.fastq.gz,b00ab18e05ec0beea75b51e36c87a8cf,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep1 infection input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep1_infection_input.fastq,<NA>,KO_rep1_infection_ribopro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663541,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/046/SRR11794846,451643779,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/046/SRR11794846,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/046/SRR11794846,607bdda336e5e838811d494497ff63e4,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346808,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,NextSeq 500 sequencing; ribosome profiling of influenza virus infected IFIT2 KO cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931309,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794847,17374979,1303123425,SAMN14931309,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,KO rep1 infection RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/047/SRR11794847/SRR11794847.fastq.gz,676603551,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/047/SRR11794847/SRR11794847.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/047/SRR11794847/SRR11794847.fastq.gz,88f056728a2931cd72fe351d06772bbb,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,KO rep1 infection RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KO_rep1_infection_RPF.fastq,<NA>,KO_rep1_infection_ribopro,<NA>,IFIT2 knockout cells,<NA>,<NA>,<NA>,<NA>,SRS6663541,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/047/SRR11794847,1065300530,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/047/SRR11794847,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/047/SRR11794847,17cfba8d0e51695d6d84c7bd504b6b5f,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346807,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling input of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931308,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794848,10427687,782076525,SAMN14931308,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep2 mock input,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/048/SRR11794848/SRR11794848.fastq.gz,454428397,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/048/SRR11794848/SRR11794848.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/048/SRR11794848/SRR11794848.fastq.gz,864fd233565f4c4b2224eaeb70af3f58,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep2 mock input,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep2_mock_input.fastq,<NA>,WT_rep2_mock_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663540,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/048/SRR11794848,631536648,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/048/SRR11794848,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/048/SRR11794848,58678943476904f6007d57299ea9aa89,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA633047,SRX8346806,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,NextSeq 500 sequencing; ribosome profiling of mock infected WT cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN14931308,This sample has been submitted by pda|mehle@berkeley.edu on 2020-07-04; Homo sapiens,NextSeq 500,SRR11794849,19019697,1426477275,SAMN14931308,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,SUB7149507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ATCC:CCL185,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT rep2 mock RPF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR117/049/SRR11794849/SRR11794849.fastq.gz,729310671,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/049/SRR11794849/SRR11794849.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR117/049/SRR11794849/SRR11794849.fastq.gz,a95d70ba0864bf27609650897b7b0aa3,2020-07-04,2020-07-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-07-04,<NA>,SINGLE,WT rep2 mock RPF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT_rep2_mock_RPF.fastq,<NA>,WT_rep2_mock_ribopro,<NA>,WT cells,<NA>,<NA>,<NA>,<NA>,SRS6663540,SRP261790,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR117/049/SRR11794849,1157063140,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/049/SRR11794849,ftp.sra.ebi.ac.uk/vol1/srr/SRR117/049/SRR11794849,e2c6d9c6affb01c41b968d28fb3b10a1,<NA>,PRJNA633047,IFIT2 CLIP-Seq to identifying RNAs bound during influenza virus infection and ribosome profiling,<NA>,<NA>,SRA1075839,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,lung,<NA>\nPRJNA634689,SRX8386869,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005046,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836448,145591529,7279576450,SAMN15005046,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,SUB7491406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E13.5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,rfp_KO_starve,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/048/SRR11836448/SRR11836448.fastq.gz,2321057385,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/048/SRR11836448/SRR11836448.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/048/SRR11836448/SRR11836448.fastq.gz,7af834a16d097fdb9974c7651fdd1369,2020-05-25,2020-05-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,rfp_KO_starve,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RPKK1RPF4_S42_L006_R1_001.fastq.gz,<NA>,Atg12KO;starve conditions,<NA>,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS6700666,SRP263114,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/048/SRR11836448,2458433358,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/048/SRR11836448,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/048/SRR11836448,d917c3e44ca245c334c33e376f6c1c60,C57BL/6,PRJNA634689,Ribosome profiling reveals a functional role for autophagy in protein translational control,<NA>,<NA>,SRA1079135,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA634689,SRX8386867,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 KO MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005045,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836450,140445387,7022269350,SAMN15005045,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,SUB7491406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E13.5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,rpf_KO_fed,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/050/SRR11836450/SRR11836450.fastq.gz,2345950523,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/050/SRR11836450/SRR11836450.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/050/SRR11836450/SRR11836450.fastq.gz,933df6310fe5c79e5442dda8efcab506,2020-05-25,2020-05-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,rpf_KO_fed,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RPKK1RPF3_S41_L006_R1_001.fastq.gz,<NA>,Atg12KO;fed conditions,<NA>,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS6700665,SRP263114,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/050/SRR11836450,2329686083,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/050/SRR11836450,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/050/SRR11836450,574b85936a9498a65be7838881e50693,C57BL/6,PRJNA634689,Ribosome profiling reveals a functional role for autophagy in protein translational control,<NA>,<NA>,SRA1079135,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA634689,SRX8386865,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005044,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836452,105289031,5264451550,SAMN15005044,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,SUB7491406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E13.5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,rpf_control_starve,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/052/SRR11836452/SRR11836452.fastq.gz,1668578813,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/052/SRR11836452/SRR11836452.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/052/SRR11836452/SRR11836452.fastq.gz,a05d853b3fd3625003940ecca3355af4,2020-05-25,2020-05-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,rpf_control_starve,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RPKK1RPF2_S40_L006_R1_001.fastq.gz,<NA>,Atg12f/f;starve conditions,<NA>,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS6700664,SRP263114,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/052/SRR11836452,1759979832,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/052/SRR11836452,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/052/SRR11836452,4d96bd0477342c5229bbff0af8d900c5,C57BL/6,PRJNA634689,Ribosome profiling reveals a functional role for autophagy in protein translational control,<NA>,<NA>,SRA1079135,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA634689,SRX8386863,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,Illumina HiSeq 2000 sequencing; Ribosome profiling of Atg12 WT MEFs,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15005043,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,Illumina HiSeq 2000,SRR11836454,220484500,11024225000,SAMN15005043,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,SUB7491406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,E13.5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,rpf_control_fed,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/054/SRR11836454/SRR11836454.fastq.gz,3429651921,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/054/SRR11836454/SRR11836454.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/054/SRR11836454/SRR11836454.fastq.gz,ef6060a01f82369ca57804229cca1466,2020-05-25,2020-05-25,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,rpf_control_fed,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RPKK1RPF1_S39_L006_R1_001.fastq.gz,<NA>,Atg12f/f;fed conditions,<NA>,This sample has been submitted by pda|juliet_goldsmith on 2020-05-25; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS6700663,SRP263114,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/054/SRR11836454,3385964138,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/054/SRR11836454,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/054/SRR11836454,17fa9932771ecc86d0cb71306e7c5f21,C57BL/6,PRJNA634689,Ribosome profiling reveals a functional role for autophagy in protein translational control,<NA>,<NA>,SRA1079135,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryo,<NA>\nPRJNA634769,SRX8388156,Illumina NovaSeq 6000 sequencing; GSM4567011: Gcn2 WT +AA - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567011: Gcn2 WT +AA - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006898,Gcn2 WT +AA - Ribosome profiling,Illumina NovaSeq 6000,SRR11837742,25517300,959270048,SAMN15006898,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KRPC-A cells (from gen. eng. murine tumors),PDAC-like pancreatic tumor cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4567011,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/042/SRR11837742/SRR11837742.fastq.gz,583357555,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/042/SRR11837742/SRR11837742.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/042/SRR11837742/SRR11837742.fastq.gz,2ce2cfcb20056baf032caa115017b434,2020-05-27,2020-05-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4567011_r1,<NA>,GSM4567011,<NA>,Gcn2 WT +AA - Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS6701689,SRP263196,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/042/SRR11837742,394431389,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/042/SRR11837742,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/042/SRR11837742,ba2ca9515daea62ad27039d1105cbc16,<NA>,GSE151118,GCN2 adapts the proteome to scavenging-dependent growth,<NA>,<NA>,SRA1079230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA634769,SRX8388157,Illumina NovaSeq 6000 sequencing; GSM4567012: Gcn2 WT -Leu - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567012: Gcn2 WT -Leu - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006897,Gcn2 WT -Leu - Ribosome profiling,Illumina NovaSeq 6000,SRR11837743,9333359,363034141,SAMN15006897,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KRPC-A cells (from gen. eng. murine tumors),PDAC-like pancreatic tumor cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4567012,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/043/SRR11837743/SRR11837743.fastq.gz,210551556,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/043/SRR11837743/SRR11837743.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/043/SRR11837743/SRR11837743.fastq.gz,8b5364cabb3176da58276d9e93e30b21,2020-05-27,2020-05-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4567012_r1,<NA>,GSM4567012,<NA>,Gcn2 WT -Leu - Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS6701690,SRP263196,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/043/SRR11837743,154615621,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/043/SRR11837743,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/043/SRR11837743,51b7a2fdf5a6ff9f274fb0f0c474e7d2,<NA>,GSE151118,GCN2 adapts the proteome to scavenging-dependent growth,<NA>,<NA>,SRA1079230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA634769,SRX8388158,Illumina NovaSeq 6000 sequencing; GSM4567013: Gcn2 KO +AA - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567013: Gcn2 KO +AA - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006896,Gcn2 KO +AA - Ribosome profiling,Illumina NovaSeq 6000,SRR11837744,19672326,749452566,SAMN15006896,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KRPC-A cells (from gen. eng. murine tumors),PDAC-like pancreatic tumor cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4567013,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/044/SRR11837744/SRR11837744.fastq.gz,449494224,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/044/SRR11837744/SRR11837744.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/044/SRR11837744/SRR11837744.fastq.gz,e8edf82574048ac39ca37acd03ea4581,2020-05-27,2020-05-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4567013_r1,<NA>,GSM4567013,<NA>,Gcn2 KO +AA - Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS6701691,SRP263196,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/044/SRR11837744,310037759,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/044/SRR11837744,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/044/SRR11837744,ac35df692cb1e11f0f2e265d8b5b17bb,<NA>,GSE151118,GCN2 adapts the proteome to scavenging-dependent growth,<NA>,<NA>,SRA1079230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA634769,SRX8388159,Illumina NovaSeq 6000 sequencing; GSM4567014: Gcn2 KO -Leu - Ribosome profiling; Mus musculus; OTHER,Illumina NovaSeq 6000 sequencing; GSM4567014: Gcn2 KO -Leu - Ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15006895,Gcn2 KO -Leu - Ribosome profiling,Illumina NovaSeq 6000,SRR11837745,15327574,596032744,SAMN15006895,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,KRPC-A cells (from gen. eng. murine tumors),PDAC-like pancreatic tumor cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4567014,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR118/045/SRR11837745/SRR11837745.fastq.gz,353069823,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/045/SRR11837745/SRR11837745.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR118/045/SRR11837745/SRR11837745.fastq.gz,cc19b90646e1b26bc1b491eb24a6327c,2020-05-27,2020-05-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4567014_r1,<NA>,GSM4567014,<NA>,Gcn2 KO -Leu - Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS6701692,SRP263196,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR118/045/SRR11837745,252798574,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/045/SRR11837745,ftp.sra.ebi.ac.uk/vol1/srr/SRR118/045/SRR11837745,9035bbe85077d34ac971d339ab0b3729,<NA>,GSE151118,GCN2 adapts the proteome to scavenging-dependent growth,<NA>,<NA>,SRA1079230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680381,\"Illumina HiSeq 2500 sequencing; GSM4658960: Ribosome profiling from untreated cells, rep 1; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658960: Ribosome profiling from untreated cells, rep 1; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464693,\"Ribosome profiling from untreated cells, rep 1\",Illumina HiSeq 2500,SRR12164922,12957040,647852000,SAMN15464693,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658960,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/022/SRR12164922/SRR12164922.fastq.gz,308610891,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/022/SRR12164922/SRR12164922.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/022/SRR12164922/SRR12164922.fastq.gz,9a9abbc84871d2a924766074fc4e7408,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658960_r1,<NA>,GSM4658960,<NA>,\"Ribosome profiling from untreated cells, rep 1\",<NA>,<NA>,<NA>,<NA>,SRS6959430,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/022/SRR12164922,256818914,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/022/SRR12164922,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/022/SRR12164922,639600c05625dfa2d6e2d3bac108ad02,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680383,\"Illumina HiSeq 2500 sequencing; GSM4658962: Ribosome profiling from untreated cells, rep 2; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658962: Ribosome profiling from untreated cells, rep 2; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464691,\"Ribosome profiling from untreated cells, rep 2\",Illumina HiSeq 2500,SRR12164924,13572040,678602000,SAMN15464691,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658962,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/024/SRR12164924/SRR12164924.fastq.gz,318167431,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/024/SRR12164924/SRR12164924.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/024/SRR12164924/SRR12164924.fastq.gz,e744946e4ae99ffa0a9ca25ae8858b75,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658962_r1,<NA>,GSM4658962,<NA>,\"Ribosome profiling from untreated cells, rep 2\",<NA>,<NA>,<NA>,<NA>,SRS6959432,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/024/SRR12164924,267553123,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/024/SRR12164924,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/024/SRR12164924,59e2051d9e9269f10f706cbdeec7f462,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680385,\"Illumina HiSeq 2500 sequencing; GSM4658964: Ribosome profiling from untreated cells, rep 3; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658964: Ribosome profiling from untreated cells, rep 3; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464689,\"Ribosome profiling from untreated cells, rep 3\",Illumina HiSeq 2500,SRR12164926,13747244,687362200,SAMN15464689,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658964,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/026/SRR12164926/SRR12164926.fastq.gz,321451259,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/026/SRR12164926/SRR12164926.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/026/SRR12164926/SRR12164926.fastq.gz,7763099923d5801484bcd02ab9410ca6,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658964_r1,<NA>,GSM4658964,<NA>,\"Ribosome profiling from untreated cells, rep 3\",<NA>,<NA>,<NA>,<NA>,SRS6959433,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/026/SRR12164926,271639409,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/026/SRR12164926,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/026/SRR12164926,dd773d5d622bbb34321b41e3a2c49fe4,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680387,\"Illumina HiSeq 2500 sequencing; GSM4658966: Ribosome profiling from radicicol cells, rep 1; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658966: Ribosome profiling from radicicol cells, rep 1; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464687,\"Ribosome profiling from radicicol cells, rep 1\",Illumina HiSeq 2500,SRR12164928,16942016,847100800,SAMN15464687,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658966,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/028/SRR12164928/SRR12164928.fastq.gz,396281505,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/028/SRR12164928/SRR12164928.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/028/SRR12164928/SRR12164928.fastq.gz,4658a7c791fd421856d848ab73a600b4,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658966_r1,<NA>,GSM4658966,<NA>,\"Ribosome profiling from radicicol cells, rep 1\",<NA>,<NA>,<NA>,<NA>,SRS6959435,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/028/SRR12164928,333428679,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/028/SRR12164928,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/028/SRR12164928,da564e3739c209eb422fcf56ce8d544a,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680389,\"Illumina HiSeq 2500 sequencing; GSM4658968: Ribosome profiling from radicicol cells, rep 2; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658968: Ribosome profiling from radicicol cells, rep 2; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464684,\"Ribosome profiling from radicicol cells, rep 2\",Illumina HiSeq 2500,SRR12164930,19204213,960210650,SAMN15464684,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658968,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/030/SRR12164930/SRR12164930.fastq.gz,451440840,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/030/SRR12164930/SRR12164930.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/030/SRR12164930/SRR12164930.fastq.gz,946b7f4b2d41e7d8a943e0732e8009a0,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658968_r1,<NA>,GSM4658968,<NA>,\"Ribosome profiling from radicicol cells, rep 2\",<NA>,<NA>,<NA>,<NA>,SRS6959437,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/030/SRR12164930,381803067,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/030/SRR12164930,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/030/SRR12164930,f43da80fe25b6e433b8882a762793964,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA644594,SRX8680391,\"Illumina HiSeq 2500 sequencing; GSM4658970: Ribosome profiling from radicicol cells, rep 3; Saccharomyces cerevisiae; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4658970: Ribosome profiling from radicicol cells, rep 3; Saccharomyces cerevisiae; OTHER\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN15464682,\"Ribosome profiling from radicicol cells, rep 3\",Illumina HiSeq 2500,SRR12164932,18470726,923536300,SAMN15464682,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4658970,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/032/SRR12164932/SRR12164932.fastq.gz,429882639,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/032/SRR12164932/SRR12164932.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/032/SRR12164932/SRR12164932.fastq.gz,df4ac77ef2eff9eb21ab73fd21a8de70,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4658970_r1,<NA>,GSM4658970,<NA>,\"Ribosome profiling from radicicol cells, rep 3\",<NA>,<NA>,<NA>,<NA>,SRS6959439,SRP270667,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/032/SRR12164932,363690682,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/032/SRR12164932,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/032/SRR12164932,83bad178b8520bf0fd33607a251fb223,<NA>,GSE153945,Persistent activation of mRNA translation by transient Hsp90 inhibition,<NA>,<NA>,SRA1095815,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA645135,SRX8699982,\"Illumina HiSeq 2500 sequencing; GSM4663991: control mouse brain, SMN-specific ribosome profiling, P5, rep 1; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663991: control mouse brain, SMN-specific ribosome profiling, P5, rep 1; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493455,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 1\",Illumina HiSeq 2500,SRR12185464,49288500,2464425000,SAMN15493455,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,P5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4663991,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/064/SRR12185464/SRR12185464.fastq.gz,1238540215,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/064/SRR12185464/SRR12185464.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/064/SRR12185464/SRR12185464.fastq.gz,edbe6befe615b26183f0d41c07c29bd0,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4663991_r1,<NA>,GSM4663991,<NA>,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 1\",<NA>,<NA>,<NA>,<NA>,SRS6977820,SRP271117,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/064/SRR12185464,1110181554,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/064/SRR12185464,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/064/SRR12185464,a2dd44e5f2995013463c697546d23999,<NA>,GSE154106,Ribosome profiling of SMN-primed ribosomes and active ribosome profiling from brains of a mouse model of severe SMA,<NA>,<NA>,SRA1096857,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA645135,SRX8699983,\"Illumina HiSeq 2500 sequencing; GSM4663992: control mouse brain, SMN-specific ribosome profiling, P5, rep 2; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663992: control mouse brain, SMN-specific ribosome profiling, P5, rep 2; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493454,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 2\",Illumina HiSeq 2500,SRR12185465,33474442,1673722100,SAMN15493454,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,P5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4663992,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/065/SRR12185465/SRR12185465.fastq.gz,862433834,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/065/SRR12185465/SRR12185465.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/065/SRR12185465/SRR12185465.fastq.gz,1784c235d74fb69c1ca54cf7cdd1d3a9,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4663992_r1,<NA>,GSM4663992,<NA>,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 2\",<NA>,<NA>,<NA>,<NA>,SRS6977821,SRP271117,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/065/SRR12185465,757217900,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/065/SRR12185465,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/065/SRR12185465,9fb3b6d6f1021baa1c1ccec1dd0bffc9,<NA>,GSE154106,Ribosome profiling of SMN-primed ribosomes and active ribosome profiling from brains of a mouse model of severe SMA,<NA>,<NA>,SRA1096857,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA645135,SRX8699984,\"Illumina HiSeq 2500 sequencing; GSM4663993: control mouse brain, SMN-specific ribosome profiling, P5, rep 3; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663993: control mouse brain, SMN-specific ribosome profiling, P5, rep 3; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493464,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 3\",Illumina HiSeq 2500,SRR12185466,85414030,4270701500,SAMN15493464,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,P5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4663993,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/066/SRR12185466/SRR12185466.fastq.gz,2088384206,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/066/SRR12185466/SRR12185466.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/066/SRR12185466/SRR12185466.fastq.gz,f7a822d4818668fbe9fb88c41759b941,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4663993_r1,<NA>,GSM4663993,<NA>,\"control mouse brain, SMN-specific ribosome profiling, P5, rep 3\",<NA>,<NA>,<NA>,<NA>,SRS6977822,SRP271117,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/066/SRR12185466,1896821649,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/066/SRR12185466,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/066/SRR12185466,86f6215db52cd2e256ed8ff2ce16f695,<NA>,GSE154106,Ribosome profiling of SMN-primed ribosomes and active ribosome profiling from brains of a mouse model of severe SMA,<NA>,<NA>,SRA1096857,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA645135,SRX8699985,\"Illumina HiSeq 2500 sequencing; GSM4663994: control mouse brain, IgG control ribosome profiling, P5, rep 1; Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM4663994: control mouse brain, IgG control ribosome profiling, P5, rep 1; Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN15493463,\"control mouse brain, IgG control ribosome profiling, P5, rep 1\",Illumina HiSeq 2500,SRR12185467,116656582,5832829100,SAMN15493463,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,P5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM4663994,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR121/067/SRR12185467/SRR12185467.fastq.gz,2851818901,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/067/SRR12185467/SRR12185467.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR121/067/SRR12185467/SRR12185467.fastq.gz,45d88b619f77e4779647fe7a5c67051c,2020-08-12,2020-08-12,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-08-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM4663994_r1,<NA>,GSM4663994,<NA>,\"control mouse brain, IgG control ribosome profiling, P5, rep 1\",<NA>,<NA>,<NA>,<NA>,SRS6977823,SRP271117,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR121/067/SRR12185467,2577891926,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/067/SRR12185467,ftp.sra.ebi.ac.uk/vol1/srr/SRR121/067/SRR12185467,5b8a90dc90e550fa2687362ab6d43cc3,<NA>,GSE154106,Ribosome profiling of SMN-primed ribosomes and active ribosome profiling from brains of a mouse model of severe SMA,<NA>,<NA>,SRA1096857,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA245106,SRX523430,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 1 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 1 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731565,Saccharomyces cerevisiae Ribosome profiling Wild-type,Illumina HiSeq 2500,SRR1258539,28404464,1448627664,SAMN02731565,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT Ribosome Profiling 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/009/SRR1258539/SRR1258539.fastq.gz,852212050,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/009/SRR1258539/SRR1258539.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/009/SRR1258539/SRR1258539.fastq.gz,a7a830bbfa9e5aa23ee9cfd516792efe,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,WT Ribosome Profiling 1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT Ribosome Profiling 1,<NA>,Ribosome profiling Wild-type,<NA>,Saccharomyces cerevisiae Ribosome profiling Wild-type,<NA>,<NA>,<NA>,<NA>,SRS595580,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/009/SRR1258539,836964356,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/009/SRR1258539,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/009/SRR1258539,f6db5d1a53e47f7e48fc6085639cdf85,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA245106,SRX523431,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 2 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, biological replicate 2 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731565,Saccharomyces cerevisiae Ribosome profiling Wild-type,Illumina HiSeq 2500,SRR1258540,22793695,1162478445,SAMN02731565,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT Ribosome Profiling 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/000/SRR1258540/SRR1258540.fastq.gz,670437340,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/000/SRR1258540/SRR1258540.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/000/SRR1258540/SRR1258540.fastq.gz,6472e2937d7e4aad5898ee162468b1e7,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,WT Ribosome Profiling 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT Ribosome Profiling 2,<NA>,Ribosome profiling Wild-type,<NA>,Saccharomyces cerevisiae Ribosome profiling Wild-type,<NA>,<NA>,<NA>,<NA>,SRS595580,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/000/SRR1258540,666263868,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/000/SRR1258540,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/000/SRR1258540,1188d4fa09cff7b2b10d8f14d8979114,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA245106,SRX523432,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 1 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 1 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731566,Saccharomyces cerevisiae Ribosome profiling upf1,Illumina HiSeq 2500,SRR1258541,21727393,1108097043,SAMN02731566,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,upf1 Ribosome Profiling 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/001/SRR1258541/SRR1258541.fastq.gz,645343789,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/001/SRR1258541/SRR1258541.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/001/SRR1258541/SRR1258541.fastq.gz,1b15e8104af13862d4a181123dc13444,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,upf1 Ribosome Profiling 1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,upf1 Ribosome Profiling 1,<NA>,Ribosome profiling upf1,<NA>,Saccharomyces cerevisiae Ribosome profiling upf1,<NA>,<NA>,<NA>,<NA>,SRS595581,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/001/SRR1258541,637021500,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/001/SRR1258541,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/001/SRR1258541,a4ef9fb19927eb1eab124b812114cbec,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA245106,SRX523433,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 2 of 2\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, biological replicate 2 of 2\",4932,Saccharomyces cerevisiae,OTHER,TRANSCRIPTOMIC,other,SAMN02731566,Saccharomyces cerevisiae Ribosome profiling upf1,Illumina HiSeq 2500,SRR1258542,23351093,1190905743,SAMN02731566,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,upf1 Ribosome Profiling 2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/002/SRR1258542/SRR1258542.fastq.gz,678634984,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/002/SRR1258542/SRR1258542.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/002/SRR1258542/SRR1258542.fastq.gz,8e0ac078a75ca2d1440a796e83ba0f20,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,upf1 Ribosome Profiling 2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,upf1 Ribosome Profiling 2,<NA>,Ribosome profiling upf1,<NA>,Saccharomyces cerevisiae Ribosome profiling upf1,<NA>,<NA>,<NA>,<NA>,SRS595581,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/002/SRR1258542,670651959,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/002/SRR1258542,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/002/SRR1258542,bcdbab10fcaa497539702c9fd036cf89,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA245106,SRX523434,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, fragmented control\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling Wild-type, fragmented control\",4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMN02731567,\"Saccharomyces cerevisiae Ribosome profiling Wild-type, fragmented control\",Illumina HiSeq 2500,SRR1258543,7341479,374415429,SAMN02731567,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,\"WT Ribosome Profiling, fragmented control\",<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/003/SRR1258543/SRR1258543.fastq.gz,284371985,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/003/SRR1258543/SRR1258543.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/003/SRR1258543/SRR1258543.fastq.gz,cd2c899f745c5b5ba8eff3207b24980b,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,\"WT Ribosome Profiling, fragmented control\",<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"WT Ribosome Profiling, fragmented control\",<NA>,\"Ribosome profiling WT, fragmented control\",<NA>,\"Saccharomyces cerevisiae Ribosome profiling Wild-type, fragmented control\",<NA>,<NA>,<NA>,<NA>,SRS595583,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/003/SRR1258543,225951263,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/003/SRR1258543,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/003/SRR1258543,4932b09ad6f5f7631e85ca00b228872a,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA245106,SRX523435,\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, fragmented control\",\"Illumina HiSeq 2500 sequencing; Saccharomyces cerevisiae Ribosome Profiling upf1, fragmented control\",4932,Saccharomyces cerevisiae,RNA-Seq,TRANSCRIPTOMIC,other,SAMN02731568,\"Saccharomyces cerevisiae Ribosome profiling upf1, fragmented control\",Illumina HiSeq 2500,SRR1258544,7912713,403548363,SAMN02731568,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Center for RNA Molecular Biology,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,\"upf1 Ribosome Profiling, fragmented control\",<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR125/004/SRR1258544/SRR1258544.fastq.gz,311541593,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/004/SRR1258544/SRR1258544.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR125/004/SRR1258544/SRR1258544.fastq.gz,f2f8d77fe3f1a91c244796640671f50b,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,\"upf1 Ribosome Profiling, fragmented control\",<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"upf1 Ribosome Profiling, fragmented control\",<NA>,\"Ribosome profiling upf1, fragmented control\",<NA>,\"Saccharomyces cerevisiae Ribosome profiling upf1, fragmented control\",<NA>,<NA>,<NA>,<NA>,SRS595584,SRP041349,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR125/004/SRR1258544,244756531,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/004/SRR1258544,ftp.sra.ebi.ac.uk/vol1/srr/SRR125/004/SRR1258544,710c98ae3dc9e4c758f30015a9c5e1e1,BY4741,PRJNA245106,RNA-Seq and Ribosome Profiling in Saccharomyces cerevisiae,<NA>,<NA>,SRA170837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Liquid culture,<NA>\nPRJNA253056,SRX610794,Illumina HiSeq 2000 sequencing; GSM1415871: ribosome profiling MicL t0; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1415871: ribosome profiling MicL t0; Escherichia coli; RNA-Seq,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02866373,ribosome profiling MicL t0,Illumina HiSeq 2000,SRR1425203,18782455,595176034,SAMN02866373,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1415871,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR142/003/SRR1425203/SRR1425203.fastq.gz,644862037,ftp.sra.ebi.ac.uk/vol1/fastq/SRR142/003/SRR1425203/SRR1425203.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR142/003/SRR1425203/SRR1425203.fastq.gz,6f157d5e1e5e9b958cd10164cbeb8200,2014-08-19,2014-08-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1415871_r1,<NA>,GSM1415871,<NA>,ribosome profiling MicL t0,<NA>,<NA>,<NA>,<NA>,SRS641794,SRP043387,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR142/003/SRR1425203,476246245,ftp.sra.ebi.ac.uk/vol1/srr/SRR142/003/SRR1425203,ftp.sra.ebi.ac.uk/vol1/srr/SRR142/003/SRR1425203,60f689477c7757136e4e0e6909cd7be3,K-12,GSE58637,\"MicL, a new sE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein\",<NA>,MG1655,SRA171605,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA253056,SRX610795,Illumina HiSeq 2000 sequencing; GSM1415872: ribosome profiling MicL t20; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1415872: ribosome profiling MicL t20; Escherichia coli; RNA-Seq,511145,Escherichia coli str. K-12 substr. MG1655,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02866371,ribosome profiling MicL t20,Illumina HiSeq 2000,SRR1425204,28587329,869137845,SAMN02866371,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1415872,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR142/004/SRR1425204/SRR1425204.fastq.gz,952614123,ftp.sra.ebi.ac.uk/vol1/fastq/SRR142/004/SRR1425204/SRR1425204.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR142/004/SRR1425204/SRR1425204.fastq.gz,206a96d6c129075049d2daf3d980a8a0,2014-08-19,2014-08-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1415872_r1,<NA>,GSM1415872,<NA>,ribosome profiling MicL t20,<NA>,<NA>,<NA>,<NA>,SRS641795,SRP043387,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR142/004/SRR1425204,696662876,ftp.sra.ebi.ac.uk/vol1/srr/SRR142/004/SRR1425204,ftp.sra.ebi.ac.uk/vol1/srr/SRR142/004/SRR1425204,534f4865952735b5be55b94a113eef4c,K-12,GSE58637,\"MicL, a new sE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein\",<NA>,MG1655,SRA171605,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA261698,SRX708004,Illumina HiSeq 2000 sequencing; GSM1509451: Ribosome profiling data of untreated E. coli cells; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509451: Ribosome profiling data of untreated E. coli cells; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075507,Ribosome profiling data of untreated E. coli cells,Illumina HiSeq 2000,SRR1583082,22259168,1135217568,SAMN03075507,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1509451,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR158/002/SRR1583082/SRR1583082.fastq.gz,1051244164,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/002/SRR1583082/SRR1583082.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/002/SRR1583082/SRR1583082.fastq.gz,9b9fc3d779031bc36e8b23176ac57eab,2015-03-21,2015-03-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1509451_r1,<NA>,GSM1509451,<NA>,Ribosome profiling data of untreated E. coli cells,<NA>,<NA>,<NA>,<NA>,SRS707090,SRP047380,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR158/002/SRR1583082,843023862,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/002/SRR1583082,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/002/SRR1583082,f2d463ca56d476a59e61706cec110c38,BW25113 ΔtolC,GSE61619,The general mode of translation inhibition by macrolide antibiotics,<NA>,<NA>,SRA185504,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA261698,SRX708005,Illumina HiSeq 2000 sequencing; GSM1509452: Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509452: Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075508,Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin,Illumina HiSeq 2000,SRR1583083,26096770,1330935270,SAMN03075508,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1509452,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR158/003/SRR1583083/SRR1583083.fastq.gz,1103142549,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/003/SRR1583083/SRR1583083.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/003/SRR1583083/SRR1583083.fastq.gz,3c7a12ac0f72e2d8d5fed286cb85eebb,2015-03-21,2015-03-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1509452_r1,<NA>,GSM1509452,<NA>,Ribosome profiling data of E. coli cells treated with the antibiotic erythromycin,<NA>,<NA>,<NA>,<NA>,SRS707091,SRP047380,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR158/003/SRR1583083,924600606,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/003/SRR1583083,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/003/SRR1583083,f38b25743e086c769969c1315bc9b806,BW25113 ΔtolC,GSE61619,The general mode of translation inhibition by macrolide antibiotics,<NA>,<NA>,SRA185504,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA261698,SRX708006,Illumina HiSeq 2000 sequencing; GSM1509453: Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin; Escherichia coli BW25113; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1509453: Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin; Escherichia coli BW25113; RNA-Seq,679895,Escherichia coli BW25113,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03075509,Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin,Illumina HiSeq 2000,SRR1583084,23465502,1196740602,SAMN03075509,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1509453,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR158/004/SRR1583084/SRR1583084.fastq.gz,999062626,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/004/SRR1583084/SRR1583084.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR158/004/SRR1583084/SRR1583084.fastq.gz,049a3cd96a0feace244661ec3476a954,2015-03-21,2015-03-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1509453_r1,<NA>,GSM1509453,<NA>,Ribosome profiling data of E. coli cells treated with the antibiotic telithromycin,<NA>,<NA>,<NA>,<NA>,SRS707092,SRP047380,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR158/004/SRR1583084,834691055,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/004/SRR1583084,ftp.sra.ebi.ac.uk/vol1/srr/SRR158/004/SRR1583084,4d8e14d53bda3e8a13034d072e659d0b,BW25113 ΔtolC,GSE61619,The general mode of translation inhibition by macrolide antibiotics,<NA>,<NA>,SRA185504,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA223608,SRX367006,Illumina Genome Analyzer II sequencing; GSM1248735: mock-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM1248735: mock-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380977,mock-transfected ribosome profiling,Illumina Genome Analyzer II,SRR1598971,28443731,1023974316,SAMN02380977,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1248735,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR159/001/SRR1598971/SRR1598971.fastq.gz,883411039,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/001/SRR1598971/SRR1598971.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/001/SRR1598971/SRR1598971.fastq.gz,7dcae2d70905e5e09e45c0e0270ea100,2014-10-20,2014-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1248735_r11,<NA>,GSM1248735,<NA>,mock-transfected ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS493132,SRP031849,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR159/001/SRR1598971,616766971,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/001/SRR1598971,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/001/SRR1598971,a4f681a6b67cf9b4f98b19c80e27ebec,<NA>,GSE51584,Expanded identification and characterization of mammalian circular RNAs,<NA>,<NA>,SRA107958,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA223608,SRX367000,Illumina HiSeq 2000 sequencing; GSM1248729: miR-1-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1248729: miR-1-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380975,miR-1-transfected ribosome profiling,Illumina HiSeq 2000,SRR1598975,92575736,4628786800,SAMN02380975,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1248729,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR159/005/SRR1598975/SRR1598975.fastq.gz,3748555454,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/005/SRR1598975/SRR1598975.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/005/SRR1598975/SRR1598975.fastq.gz,f8d3320920592c4b06e3c9821c05e364,2014-10-20,2014-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1248729_r11,<NA>,GSM1248729,<NA>,miR-1-transfected ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS493126,SRP031849,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR159/005/SRR1598975,2862357033,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/005/SRR1598975,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/005/SRR1598975,297195f02926057a1757e10b08b45975,<NA>,GSE51584,Expanded identification and characterization of mammalian circular RNAs,<NA>,<NA>,SRA107958,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA223608,SRX367003,Illumina Genome Analyzer II sequencing; GSM1248732: miR-155-transfected ribosome profiling; Homo sapiens; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM1248732: miR-155-transfected ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02380973,miR-155-transfected ribosome profiling,Illumina Genome Analyzer II,SRR1598981,29613617,1066090212,SAMN02380973,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1248732,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR159/001/SRR1598981/SRR1598981.fastq.gz,943724192,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/001/SRR1598981/SRR1598981.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR159/001/SRR1598981/SRR1598981.fastq.gz,161e53e9d5cecb254449132b229d979a,2014-10-20,2014-11-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1248732_r11,<NA>,GSM1248732,<NA>,miR-155-transfected ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS493129,SRP031849,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR159/001/SRR1598981,641332469,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/001/SRR1598981,ftp.sra.ebi.ac.uk/vol1/srr/SRR159/001/SRR1598981,b4a230bfe61ede35e6377f928678aafd,<NA>,GSE51584,Expanded identification and characterization of mammalian circular RNAs,<NA>,<NA>,SRA107958,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660328,30964025,2322301875,SAMN03216854,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/008/SRR1660328/SRR1660328.fastq.gz,1418181036,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/008/SRR1660328/SRR1660328.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/008/SRR1660328/SRR1660328.fastq.gz,ab9757fa78ede3c535c8402c84c37e39,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552807_r1,<NA>,GSM1552807,<NA>,Rec-OE NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750218,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/008/SRR1660328,1372460461,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/008/SRR1660328,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/008/SRR1660328,a32a4c7274ae431e36f989eb6d76bc39,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660329,39632893,2972466975,SAMN03216854,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/009/SRR1660329/SRR1660329.fastq.gz,1675838202,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/009/SRR1660329/SRR1660329.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/009/SRR1660329/SRR1660329.fastq.gz,3ec4ecd81d73ec4517dc762419e41a04,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552807_r2,<NA>,GSM1552807,<NA>,Rec-OE NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750218,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/009/SRR1660329,1679075334,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/009/SRR1660329,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/009/SRR1660329,63edf9c3dad24b176320417421ed15b5,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660330,43632403,3272430225,SAMN03216854,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/000/SRR1660330/SRR1660330.fastq.gz,1900543339,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/000/SRR1660330/SRR1660330.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/000/SRR1660330/SRR1660330.fastq.gz,9b6e3df4acc6db9bdadac3ba4532a206,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552807_r3,<NA>,GSM1552807,<NA>,Rec-OE NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750218,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/000/SRR1660330,1850902760,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/000/SRR1660330,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/000/SRR1660330,b0dca4237a15514e975e3af9b572926d,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765941,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552807: Rec-OE NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216854,Rec-OE NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660331,38175907,2863193025,SAMN03216854,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/001/SRR1660331/SRR1660331.fastq.gz,1645171509,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/001/SRR1660331/SRR1660331.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/001/SRR1660331/SRR1660331.fastq.gz,0f4373e7f62e15e3d8193f94b92bdd9e,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552807_r4,<NA>,GSM1552807,<NA>,Rec-OE NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750218,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/001/SRR1660331,1613718131,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/001/SRR1660331,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/001/SRR1660331,cb5c37c3517b30fc4b16b610c5fb5972,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660332,61772582,4632943650,SAMN03216852,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/002/SRR1660332/SRR1660332.fastq.gz,3032364952,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/002/SRR1660332/SRR1660332.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/002/SRR1660332/SRR1660332.fastq.gz,234d34e4746209729b6ab91a9ba47fb3,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552808_r1,<NA>,GSM1552808,<NA>,WT control NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750219,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/002/SRR1660332,3019837179,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/002/SRR1660332,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/002/SRR1660332,ebdc2aad55b69bf73ebe7b557fbc708b,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660333,21771791,661735742,SAMN03216852,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/003/SRR1660333/SRR1660333.fastq.gz,311739369,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/003/SRR1660333/SRR1660333.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/003/SRR1660333/SRR1660333.fastq.gz,f1434375073ee04cc473fd868df7abc2,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552808_r2,<NA>,GSM1552808,<NA>,WT control NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750219,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/003/SRR1660333,212786508,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/003/SRR1660333,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/003/SRR1660333,7062ab8fd88d818f2bd5186895611ddf,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660334,30106441,2257983075,SAMN03216852,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/004/SRR1660334/SRR1660334.fastq.gz,1358559506,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/004/SRR1660334/SRR1660334.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/004/SRR1660334/SRR1660334.fastq.gz,97062cc71493eaedaba037f799f8443f,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552808_r3,<NA>,GSM1552808,<NA>,WT control NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750219,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/004/SRR1660334,1324918631,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/004/SRR1660334,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/004/SRR1660334,65442d14b237b2a929ac7dff50f6caea,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268222,SRX765942,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1552808: WT control NCCIT Ribosome profiling (RPF); Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03216852,WT control NCCIT Ribosome profiling (RPF),Illumina HiSeq 2000,SRR1660335,44297155,3322286625,SAMN03216852,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"NCCIT cells, hECC\",GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1552808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/005/SRR1660335/SRR1660335.fastq.gz,1954826902,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/005/SRR1660335/SRR1660335.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/005/SRR1660335/SRR1660335.fastq.gz,ce6db46bff7f7501bb933b26993c4ed1,2015-04-22,2015-04-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1552808_r4,<NA>,GSM1552808,<NA>,WT control NCCIT Ribosome profiling (RPF),<NA>,<NA>,<NA>,<NA>,SRS750219,SRP050147,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/005/SRR1660335,1919792516,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/005/SRR1660335,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/005/SRR1660335,c0b9f49da11884743a399484ffd0b5e9,<NA>,GSE63570,High-throughput sequencing of pluripotent cells,<NA>,<NA>,SRA204209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767133,Illumina HiSeq 2000 sequencing; GSM1553248: Ribosome profiling rep1-SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553248: Ribosome profiling rep1-SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218424,Ribosome profiling rep1-SiControl-RPF,Illumina HiSeq 2000,SRR1661491,23525682,855434980,SAMN03218424,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553248,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/001/SRR1661491/SRR1661491.fastq.gz,500849011,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/001/SRR1661491/SRR1661491.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/001/SRR1661491/SRR1661491.fastq.gz,24be81fb3d6888693b2e5be6c6b591a0,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-02-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553248_r1,<NA>,GSM1553248,<NA>,Ribosome profiling rep1-SiControl-RPF,<NA>,<NA>,<NA>,<NA>,SRS751232,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/001/SRR1661491,542991633,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/001/SRR1661491,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/001/SRR1661491,00dfcc7a0776615bcf1ca777fcbe4ead,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767134,Illumina HiSeq 2000 sequencing; GSM1553249: Ribosome profiling rep1-SiControl-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553249: Ribosome profiling rep1-SiControl-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218421,Ribosome profiling rep1-SiControl-input-ribominus,Illumina HiSeq 2000,SRR1661492,21062618,958344392,SAMN03218421,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553249,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/002/SRR1661492/SRR1661492.fastq.gz,755508026,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/002/SRR1661492/SRR1661492.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/002/SRR1661492/SRR1661492.fastq.gz,0ef8eafed8eca015237dacf91a04ec1c,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553249_r1,<NA>,GSM1553249,<NA>,Ribosome profiling rep1-SiControl-input-ribominus,<NA>,<NA>,<NA>,<NA>,SRS751233,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/002/SRR1661492,638748380,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/002/SRR1661492,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/002/SRR1661492,c024fba9321ec4228074b57b45bd42a2,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767135,Illumina HiSeq 2000 sequencing; GSM1553250: Ribosome profiling rep1-SiYTHDF1_1-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553250: Ribosome profiling rep1-SiYTHDF1_1-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218422,Ribosome profiling rep1-SiYTHDF1_1-RPF,Illumina HiSeq 2000,SRR1661493,36490823,1257840702,SAMN03218422,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553250,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/003/SRR1661493/SRR1661493.fastq.gz,876854480,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/003/SRR1661493/SRR1661493.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/003/SRR1661493/SRR1661493.fastq.gz,b719f8f0a72bd8c6c5aad653fd1d0bfb,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553250_r1,<NA>,GSM1553250,<NA>,Ribosome profiling rep1-SiYTHDF1_1-RPF,<NA>,<NA>,<NA>,<NA>,SRS751234,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/003/SRR1661493,894582501,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/003/SRR1661493,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/003/SRR1661493,923b45b987323a0ab0d57f76b71f795a,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767136,Illumina HiSeq 2000 sequencing; GSM1553251: Ribosome profiling rep1-SiYTHDF1_1-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553251: Ribosome profiling rep1-SiYTHDF1_1-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218419,Ribosome profiling rep1-SiYTHDF1_1-input-ribominus,Illumina HiSeq 2000,SRR1661494,22039846,991227095,SAMN03218419,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553251,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/004/SRR1661494/SRR1661494.fastq.gz,782435768,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/004/SRR1661494/SRR1661494.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/004/SRR1661494/SRR1661494.fastq.gz,6872c8805f19560f61fce7661b651495,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-13,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553251_r1,<NA>,GSM1553251,<NA>,Ribosome profiling rep1-SiYTHDF1_1-input-ribominus,<NA>,<NA>,<NA>,<NA>,SRS751235,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/004/SRR1661494,662176951,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/004/SRR1661494,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/004/SRR1661494,11905521f406dbd40faca502dee2832e,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767137,Illumina HiSeq 2000 sequencing; GSM1553252: Ribosome profiling rep2-SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553252: Ribosome profiling rep2-SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218420,Ribosome profiling rep2-SiControl-RPF,Illumina HiSeq 2000,SRR1661495,26427579,966115970,SAMN03218420,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553252,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/005/SRR1661495/SRR1661495.fastq.gz,476710132,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/005/SRR1661495/SRR1661495.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/005/SRR1661495/SRR1661495.fastq.gz,792e0e3317de9e39074bf58656bc129b,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-02,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553252_r1,<NA>,GSM1553252,<NA>,Ribosome profiling rep2-SiControl-RPF,<NA>,<NA>,<NA>,<NA>,SRS751236,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/005/SRR1661495,495789625,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/005/SRR1661495,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/005/SRR1661495,aad7517a066542e6f16c1d354305be81,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767138,Illumina HiSeq 2000 sequencing; GSM1553253: Ribosome profiling rep2-SiControl-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553253: Ribosome profiling rep2-SiControl-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218426,Ribosome profiling rep2-SiControl-input-ribominus,Illumina HiSeq 2000,SRR1661496,26388944,1086043707,SAMN03218426,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553253,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/006/SRR1661496/SRR1661496.fastq.gz,720756513,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/006/SRR1661496/SRR1661496.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/006/SRR1661496/SRR1661496.fastq.gz,003dde71f28059b2beafdc7dcf639cc0,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-16,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553253_r1,<NA>,GSM1553253,<NA>,Ribosome profiling rep2-SiControl-input-ribominus,<NA>,<NA>,<NA>,<NA>,SRS751237,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/006/SRR1661496,515523617,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/006/SRR1661496,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/006/SRR1661496,de22f6afcd85ac59963dadaa3ff4f25e,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767139,Illumina HiSeq 2000 sequencing; GSM1553254: Ribosome profiling rep2-SiYTHDF1_8-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553254: Ribosome profiling rep2-SiYTHDF1_8-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218425,Ribosome profiling rep2-SiYTHDF1_8-RPF,Illumina HiSeq 2000,SRR1661497,26197590,927371837,SAMN03218425,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553254,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/007/SRR1661497/SRR1661497.fastq.gz,448115255,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/007/SRR1661497/SRR1661497.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/007/SRR1661497/SRR1661497.fastq.gz,0b9ca66942c10abc24b8b1f374b1e285,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553254_r1,<NA>,GSM1553254,<NA>,Ribosome profiling rep2-SiYTHDF1_8-RPF,<NA>,<NA>,<NA>,<NA>,SRS751238,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/007/SRR1661497,476408499,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/007/SRR1661497,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/007/SRR1661497,fe7f298294db09e09e29a1e0b649c4e7,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX767140,Illumina HiSeq 2000 sequencing; GSM1553255: Ribosome profiling rep2-SiYTHDF1_8-input-ribominus; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1553255: Ribosome profiling rep2-SiYTHDF1_8-input-ribominus; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03218427,Ribosome profiling rep2-SiYTHDF1_8-input-ribominus,Illumina HiSeq 2000,SRR1661498,29088381,1229624248,SAMN03218427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1553255,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR166/008/SRR1661498/SRR1661498.fastq.gz,805151513,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/008/SRR1661498/SRR1661498.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR166/008/SRR1661498/SRR1661498.fastq.gz,e946822fe97fea10e5fde9511274b050,2015-06-11,2015-06-11,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-13,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1553255_r1,<NA>,GSM1553255,<NA>,Ribosome profiling rep2-SiYTHDF1_8-input-ribominus,<NA>,<NA>,<NA>,<NA>,SRS751239,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR166/008/SRR1661498,578405185,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/008/SRR1661498,ftp.sra.ebi.ac.uk/vol1/srr/SRR166/008/SRR1661498,42422c8acf4e35c374c26ae777857b73,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA272662,SRX845439,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate1,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate1,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284755,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1763106,110961112,5548055600,SAMN03284755,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,China Agricultural University,<NA>,<NA>,<NA>,<NA>,<NA>,China:Beijing,<NA>,<NA>,<NA>,B73,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,ribosome profiling raw data for normal seedling replicate1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR176/006/SRR1763106/SRR1763106.fastq.gz,4233152139,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/006/SRR1763106/SRR1763106.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/006/SRR1763106/SRR1763106.fastq.gz,606e46af00c2aba69c56c25727aaecbb,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,ribosome profiling raw data for normal seedling replicate1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribosome profiling raw data for normal seedling replicate1,<NA>,14-day normal B73 seedling,<NA>,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,<NA>,<NA>,<NA>,<NA>,SRS821168,SRP052520,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR176/006/SRR1763106,3843944892,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/006/SRR1763106,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/006/SRR1763106,de5706b94ca065d7c906a950dbdcd27a,<NA>,PRJNA272662,Zea mays Transcriptome or Gene expression,<NA>,<NA>,SRA233319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seedling,<NA>\nPRJNA272662,SRX845455,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate2,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for normal seedling replicate2,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284755,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1763107,132900577,6645028850,SAMN03284755,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,China Agricultural University,<NA>,<NA>,<NA>,<NA>,<NA>,China:Beijing,<NA>,<NA>,<NA>,B73,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,ribosome profiling raw data for normal seedling replicate2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR176/007/SRR1763107/SRR1763107.fastq.gz,5006052390,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/007/SRR1763107/SRR1763107.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/007/SRR1763107/SRR1763107.fastq.gz,b9d25fcf25b922e66b473e5b4a017d23,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribosome profiling raw data for normal seedling replicate2,<NA>,14-day normal B73 seedling,<NA>,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,<NA>,<NA>,<NA>,<NA>,SRS821168,SRP052520,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR176/007/SRR1763107,4628531392,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/007/SRR1763107,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/007/SRR1763107,d3333afad4eaf7d48d9b0f6ff208029f,<NA>,PRJNA272662,Zea mays Transcriptome or Gene expression,<NA>,<NA>,SRA233319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seedling,<NA>\nPRJNA272662,SRX847139,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate1,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate1,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284757,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1765340,71262874,3563143700,SAMN03284757,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,China Agricultural University,<NA>,<NA>,<NA>,<NA>,<NA>,China:Beijing,<NA>,<NA>,<NA>,B73,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,ribosome profiling raw data for drought seedling replicate1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR176/000/SRR1765340/SRR1765340.fastq.gz,2631860729,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/000/SRR1765340/SRR1765340.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/000/SRR1765340/SRR1765340.fastq.gz,dd9519504f28ae38d5a26edebb568e59,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribosome profiling raw data for drought seedling replicate1,<NA>,14-day drought-treated B73 seedling,<NA>,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,<NA>,<NA>,<NA>,<NA>,SRS822648,SRP052520,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR176/000/SRR1765340,2435100892,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/000/SRR1765340,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/000/SRR1765340,825eb5acfa8b5c2fbf80bef85c2d7f58,<NA>,PRJNA272662,Zea mays Transcriptome or Gene expression,<NA>,<NA>,SRA233319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seedling,<NA>\nPRJNA272662,SRX847143,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate2,Illumina HiSeq 2500 sequencing; ribosome profiling raw data for drought seedling replicate2,4577,Zea mays,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03284757,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,Illumina HiSeq 2500,SRR1765360,78615417,3930770850,SAMN03284757,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,China Agricultural University,<NA>,<NA>,<NA>,<NA>,<NA>,China:Beijing,<NA>,<NA>,<NA>,B73,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,ribosome profiling raw data for drought seedling replicate2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR176/000/SRR1765360/SRR1765360.fastq.gz,2998600605,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/000/SRR1765360/SRR1765360.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR176/000/SRR1765360/SRR1765360.fastq.gz,2e8a51f8f897c7d91365cd5eefe9bc35,2015-06-05,2015-06-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribosome profiling raw data for drought seedling replicate2,<NA>,14-day drought-treated B73 seedling,<NA>,This sample has been submitted by China Agricultural University on 2015-06-02; Zea mays,<NA>,<NA>,<NA>,<NA>,SRS822648,SRP052520,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR176/000/SRR1765360,2735012288,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/000/SRR1765360,ftp.sra.ebi.ac.uk/vol1/srr/SRR176/000/SRR1765360,dcf4c35302f227757fff3f1ae2d595f4,<NA>,PRJNA272662,Zea mays Transcriptome or Gene expression,<NA>,<NA>,SRA233319,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seedling,<NA>\nPRJNA277363,SRX902511,Illumina HiSeq 2000 sequencing; GSM1625823: Cotyledon (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625823: Cotyledon (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389597,Cotyledon (25-50 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840399,51640489,2582024450,SAMN03389597,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625823,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/009/SRR1840399/SRR1840399.fastq.gz,1777679549,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/009/SRR1840399/SRR1840399.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/009/SRR1840399/SRR1840399.fastq.gz,2759d2156d9cd7a92c851e3280d74091,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625823_r1,<NA>,GSM1625823,<NA>,Cotyledon (25-50 mg) Ribosome Profiling biorep 1,<NA>,<NA>,<NA>,<NA>,SRS865195,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/009/SRR1840399,1690627898,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/009/SRR1840399,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/009/SRR1840399,6297f57ffd79e8e39c0a8126e8112d1c,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA277363,SRX902513,Illumina HiSeq 2000 sequencing; GSM1625825: Cotyledon (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625825: Cotyledon (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389589,Cotyledon (25-50 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840401,77525914,7752591400,SAMN03389589,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625825,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/001/SRR1840401/SRR1840401.fastq.gz,4456125845,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/001/SRR1840401/SRR1840401.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/001/SRR1840401/SRR1840401.fastq.gz,9e54ff3419d50d0b24ee56ca446130d7,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625825_r1,<NA>,GSM1625825,<NA>,Cotyledon (25-50 mg) Ribosome Profiling biorep 2,<NA>,<NA>,<NA>,<NA>,SRS865193,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/001/SRR1840401,5148704132,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/001/SRR1840401,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/001/SRR1840401,387ddc49465f47a196a6fae957c1d40b,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA277363,SRX902515,Illumina HiSeq 2000 sequencing; GSM1625827: Seed Coat (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625827: Seed Coat (25-50 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389599,Seed Coat (25-50 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840403,50150107,2507505350,SAMN03389599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625827,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/003/SRR1840403/SRR1840403.fastq.gz,1932175493,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/003/SRR1840403/SRR1840403.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/003/SRR1840403/SRR1840403.fastq.gz,d483f6d8bfd5d8f21fe9b9e213b9af4c,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625827_r1,<NA>,GSM1625827,<NA>,Seed Coat (25-50 mg) Ribosome Profiling biorep 1,<NA>,<NA>,<NA>,<NA>,SRS865191,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/003/SRR1840403,1755142448,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/003/SRR1840403,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/003/SRR1840403,64fefe086ed2829b51c890d4cc9475d9,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seed Coat,<NA>\nPRJNA277363,SRX902517,Illumina HiSeq 2000 sequencing; GSM1625829: Seed Coat (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625829: Seed Coat (25-50 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389600,Seed Coat (25-50 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840405,58241888,2912094400,SAMN03389600,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625829,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/005/SRR1840405/SRR1840405.fastq.gz,1789561394,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/005/SRR1840405/SRR1840405.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/005/SRR1840405/SRR1840405.fastq.gz,e445ba00525a4f391c0e4b76320658c7,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625829_r1,<NA>,GSM1625829,<NA>,Seed Coat (25-50 mg) Ribosome Profiling biorep 2,<NA>,<NA>,<NA>,<NA>,SRS865189,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/005/SRR1840405,1712244702,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/005/SRR1840405,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/005/SRR1840405,aa716963b1eba90ad89b2ee32bdad610,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seed Coat,<NA>\nPRJNA277363,SRX902519,Illumina HiSeq 2000 sequencing; GSM1625831: Cotyledon (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625831: Cotyledon (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389590,Cotyledon (100-200 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840407,86277212,4313860600,SAMN03389590,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625831,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/007/SRR1840407/SRR1840407.fastq.gz,3155463811,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/007/SRR1840407/SRR1840407.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/007/SRR1840407/SRR1840407.fastq.gz,c16535a2b43357b45599819ceb295ff6,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625831_r1,<NA>,GSM1625831,<NA>,Cotyledon (100-200 mg) Ribosome Profiling biorep 1,<NA>,<NA>,<NA>,<NA>,SRS865187,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/007/SRR1840407,2912100192,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/007/SRR1840407,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/007/SRR1840407,b66eaffe69c37ce1989a0918a9d6a6fe,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA277363,SRX902521,Illumina HiSeq 2000 sequencing; GSM1625833: Cotyledon (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625833: Cotyledon (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389603,Cotyledon (100-200 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840409,100907777,10090777700,SAMN03389603,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625833,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/009/SRR1840409/SRR1840409.fastq.gz,5391256489,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/009/SRR1840409/SRR1840409.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/009/SRR1840409/SRR1840409.fastq.gz,7c6d2a32899880204d763cd96af38774,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625833_r1,<NA>,GSM1625833,<NA>,Cotyledon (100-200 mg) Ribosome Profiling biorep 2,<NA>,<NA>,<NA>,<NA>,SRS865185,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/009/SRR1840409,6424956932,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/009/SRR1840409,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/009/SRR1840409,c34df873b31f83c040165925fe8f5283,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA277363,SRX902523,Illumina HiSeq 2000 sequencing; GSM1625835: Seed Coat (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625835: Seed Coat (100-200 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389594,Seed Coat (100-200 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840411,57960236,2898011800,SAMN03389594,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625835,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/001/SRR1840411/SRR1840411.fastq.gz,2056279848,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/001/SRR1840411/SRR1840411.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/001/SRR1840411/SRR1840411.fastq.gz,f44445629d95030b5bd30dcb03283319,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625835_r1,<NA>,GSM1625835,<NA>,Seed Coat (100-200 mg) Ribosome Profiling biorep 1,<NA>,<NA>,<NA>,<NA>,SRS865183,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/001/SRR1840411,1928241858,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/001/SRR1840411,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/001/SRR1840411,a69422668449a4ae450ae519c525a887,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seed Coat,<NA>\nPRJNA277363,SRX902525,Illumina HiSeq 2000 sequencing; GSM1625837: Seed Coat (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625837: Seed Coat (100-200 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389593,Seed Coat (100-200 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840413,72276634,3613831700,SAMN03389593,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625837,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/003/SRR1840413/SRR1840413.fastq.gz,2208925481,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/003/SRR1840413/SRR1840413.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/003/SRR1840413/SRR1840413.fastq.gz,a317efa0ef0c3873d9f1b16c87f8477e,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625837_r1,<NA>,GSM1625837,<NA>,Seed Coat (100-200 mg) Ribosome Profiling biorep 2,<NA>,<NA>,<NA>,<NA>,SRS865181,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/003/SRR1840413,2125775149,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/003/SRR1840413,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/003/SRR1840413,2ddeb4d70637288afc3b79ec0690600b,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Seed Coat,<NA>\nPRJNA277363,SRX902527,Illumina HiSeq 2000 sequencing; GSM1625839: Cotyledon (300-400 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625839: Cotyledon (300-400 mg) Ribosome Profiling biorep 1; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389601,Cotyledon (300-400 mg) Ribosome Profiling biorep 1,Illumina HiSeq 2000,SRR1840415,82331167,4116558350,SAMN03389601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625839,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/005/SRR1840415/SRR1840415.fastq.gz,3031100036,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/005/SRR1840415/SRR1840415.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/005/SRR1840415/SRR1840415.fastq.gz,b5aefa2867ee5ae6e7f2ca9afe60534b,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625839_r1,<NA>,GSM1625839,<NA>,Cotyledon (300-400 mg) Ribosome Profiling biorep 1,<NA>,<NA>,<NA>,<NA>,SRS865179,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/005/SRR1840415,2835373295,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/005/SRR1840415,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/005/SRR1840415,ffe74612fe14ab700dd24ecebc1d2b98,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA277363,SRX902529,Illumina HiSeq 2000 sequencing; GSM1625841: Cotyledon (300-400 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1625841: Cotyledon (300-400 mg) Ribosome Profiling biorep 2; Glycine max; RNA-Seq,3847,Glycine max,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03389595,Cotyledon (300-400 mg) Ribosome Profiling biorep 2,Illumina HiSeq 2000,SRR1840417,66026031,3301301550,SAMN03389595,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Williams,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1625841,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR184/007/SRR1840417/SRR1840417.fastq.gz,2420039376,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/007/SRR1840417/SRR1840417.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR184/007/SRR1840417/SRR1840417.fastq.gz,ee36c1dfe3c33d4a156d045a6ae14f95,2018-03-24,2018-03-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-03-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1625841_r1,<NA>,GSM1625841,<NA>,Cotyledon (300-400 mg) Ribosome Profiling biorep 2,<NA>,<NA>,<NA>,<NA>,SRS865177,SRP055880,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR184/007/SRR1840417,2257691340,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/007/SRR1840417,ftp.sra.ebi.ac.uk/vol1/srr/SRR184/007/SRR1840417,77f7fedea722f5b4864072edea0fa41f,<NA>,GSE66580,Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development,<NA>,<NA>,SRA245679,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cotyledon,<NA>\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964306,39082700,1954135000,SAMN03470223,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655059,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/006/SRR1964306/SRR1964306.fastq.gz,1875614835,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964306/SRR1964306.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964306/SRR1964306.fastq.gz,efdcfbe74017b090320292ba35aa8c9d,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655059_r1,<NA>,GSM1655059,<NA>,Ribosome Profiling control replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901275,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/006/SRR1964306,1350884104,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964306,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964306,c54d92c26f48208de4915cf6a19d9a70,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964307,52274080,2613704000,SAMN03470223,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655059,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/007/SRR1964307/SRR1964307.fastq.gz,2377870309,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964307/SRR1964307.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964307/SRR1964307.fastq.gz,2ef29c2988084a81e90b79edb03ada41,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-11-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655059_r2,<NA>,GSM1655059,<NA>,Ribosome Profiling control replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901275,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/007/SRR1964307,1730429301,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964307,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964307,61fa573875a5ba1fe3de425d56f77a51,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986365,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655059: Ribosome Profiling control replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470223,Ribosome Profiling control replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964308,29216820,1460841000,SAMN03470223,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655059,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/008/SRR1964308/SRR1964308.fastq.gz,1328948258,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964308/SRR1964308.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964308/SRR1964308.fastq.gz,dabc517a1b95d6fbae92bc1ee3b7b382,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-01-04,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655059_r3,<NA>,GSM1655059,<NA>,Ribosome Profiling control replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901275,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/008/SRR1964308,980651241,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964308,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964308,44c33e7c2653abd181315358b04391b1,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964309,46953344,2347667200,SAMN03470224,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655060,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/009/SRR1964309/SRR1964309.fastq.gz,2209188765,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964309/SRR1964309.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964309/SRR1964309.fastq.gz,ef577ed57c9bb9b900c32c05736a1aeb,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655060_r1,<NA>,GSM1655060,<NA>,Ribosome Profiling control replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901273,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/009/SRR1964309,1603536177,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964309,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964309,314512724f36609aa8be528577173483,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964310,67731496,3386574800,SAMN03470224,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655060,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/000/SRR1964310/SRR1964310.fastq.gz,3030150615,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/000/SRR1964310/SRR1964310.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/000/SRR1964310/SRR1964310.fastq.gz,2de6422eca974a630f9d28ee3f7e66eb,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655060_r2,<NA>,GSM1655060,<NA>,Ribosome Profiling control replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901273,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/000/SRR1964310,2212181977,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/000/SRR1964310,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/000/SRR1964310,e7e0bd1c4aaeb8ba9b05874638712b76,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986366,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655060: Ribosome Profiling control replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470224,Ribosome Profiling control replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964311,22651281,1132564050,SAMN03470224,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655060,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/001/SRR1964311/SRR1964311.fastq.gz,999465479,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/001/SRR1964311/SRR1964311.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/001/SRR1964311/SRR1964311.fastq.gz,744952d2c599e5962f0cb91b3ad630f9,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-12-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655060_r3,<NA>,GSM1655060,<NA>,Ribosome Profiling control replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901273,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/001/SRR1964311,745138625,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/001/SRR1964311,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/001/SRR1964311,59e13cad13610c2e1df63f6992319551,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964312,46189851,2309492550,SAMN03470225,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655061,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/002/SRR1964312/SRR1964312.fastq.gz,2070634915,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/002/SRR1964312/SRR1964312.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/002/SRR1964312/SRR1964312.fastq.gz,aaf6deb1a69d175b4e72fd8bbf246d05,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655061_r1,<NA>,GSM1655061,<NA>,Ribosome Profiling harringtonine replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901272,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/002/SRR1964312,1563715056,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/002/SRR1964312,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/002/SRR1964312,d780bbe72c45f919dbe664f42df0b3fc,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964313,65269559,3263477950,SAMN03470225,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655061,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/003/SRR1964313/SRR1964313.fastq.gz,2784384302,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/003/SRR1964313/SRR1964313.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/003/SRR1964313/SRR1964313.fastq.gz,3d4b3cb33d599bd5be0929f44271359d,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655061_r2,<NA>,GSM1655061,<NA>,Ribosome Profiling harringtonine replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901272,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/003/SRR1964313,2113084044,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/003/SRR1964313,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/003/SRR1964313,3dc8dbdfffb6ab8b728626b3e62a929e,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986367,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655061: Ribosome Profiling harringtonine replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470225,Ribosome Profiling harringtonine replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964314,21259213,1062960650,SAMN03470225,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655061,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/004/SRR1964314/SRR1964314.fastq.gz,904650360,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/004/SRR1964314/SRR1964314.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/004/SRR1964314/SRR1964314.fastq.gz,e734a706ac9d7233070bb0c27a4180c2,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-12-06,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655061_r3,<NA>,GSM1655061,<NA>,Ribosome Profiling harringtonine replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901272,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/004/SRR1964314,696055833,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/004/SRR1964314,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/004/SRR1964314,3e8a57a61e998fc406133256b54561e0,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964315,43321863,2166093150,SAMN03470226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655062,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/005/SRR1964315/SRR1964315.fastq.gz,2051847201,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/005/SRR1964315/SRR1964315.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/005/SRR1964315/SRR1964315.fastq.gz,f7ee929cdcac89e5de67937198140c8e,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655062_r1,<NA>,GSM1655062,<NA>,Ribosome Profiling harringtonine replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901274,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/005/SRR1964315,1517036652,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/005/SRR1964315,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/005/SRR1964315,d91abb69a0f30fffb598a79e26774057,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964316,56929421,2846471050,SAMN03470226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655062,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/006/SRR1964316/SRR1964316.fastq.gz,2624485924,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964316/SRR1964316.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964316/SRR1964316.fastq.gz,ebfa374da9020ab3f00b112e4aac888f,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-11-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655062_r2,<NA>,GSM1655062,<NA>,Ribosome Profiling harringtonine replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901274,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/006/SRR1964316,1943819848,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964316,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964316,023652109608106728065cd54cb1e3f1,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986368,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655062: Ribosome Profiling harringtonine replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470226,Ribosome Profiling harringtonine replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964317,22068321,1103416050,SAMN03470226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655062,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/007/SRR1964317/SRR1964317.fastq.gz,1003689974,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964317/SRR1964317.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964317/SRR1964317.fastq.gz,1e8b14652b99b79f8ec7a16c35fa98dd,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655062_r3,<NA>,GSM1655062,<NA>,Ribosome Profiling harringtonine replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901274,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/007/SRR1964317,759836553,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964317,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964317,c019f7c55914ca9db7bdd743688a9c8c,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964318,44125437,2206271850,SAMN03470227,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655063,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/008/SRR1964318/SRR1964318.fastq.gz,2083880017,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964318/SRR1964318.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964318/SRR1964318.fastq.gz,78857f2ca1e84ceeb6d4adaf1b8dd4cc,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-11-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655063_r1,<NA>,GSM1655063,<NA>,Ribosome Profiling pateamineA replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901271,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/008/SRR1964318,1526466597,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964318,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964318,4ec3c5c06d648cc1da8251b23b159c31,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964319,61197424,3059871200,SAMN03470227,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655063,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/009/SRR1964319/SRR1964319.fastq.gz,2797905688,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964319/SRR1964319.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964319/SRR1964319.fastq.gz,ba332fcadb1b3ad362e8e21d7af2f98b,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-01-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655063_r2,<NA>,GSM1655063,<NA>,Ribosome Profiling pateamineA replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901271,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/009/SRR1964319,2052322127,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964319,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964319,5c7fb746def1a14c93a7f732086f92f9,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986369,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655063: Ribosome Profiling pateamineA replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470227,Ribosome Profiling pateamineA replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964320,30423239,1521161950,SAMN03470227,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655063,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/000/SRR1964320/SRR1964320.fastq.gz,1359631816,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/000/SRR1964320/SRR1964320.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/000/SRR1964320/SRR1964320.fastq.gz,e33b14289f92a7257c3d912875729690,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655063_r3,<NA>,GSM1655063,<NA>,Ribosome Profiling pateamineA replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901271,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/000/SRR1964320,1018434377,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/000/SRR1964320,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/000/SRR1964320,746c9f6dcd474ac29bc7055f1fe19f71,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964321,50476436,2523821800,SAMN03470228,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655064,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/001/SRR1964321/SRR1964321.fastq.gz,2305599951,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/001/SRR1964321/SRR1964321.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/001/SRR1964321/SRR1964321.fastq.gz,5dc3a425d6d483d8e69eeebeffbe95c7,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655064_r1,<NA>,GSM1655064,<NA>,Ribosome Profiling pateamineA replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901270,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/001/SRR1964321,1724625780,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/001/SRR1964321,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/001/SRR1964321,7cda54410d0d916329ff3eaf68d1f643,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964322,72527646,3626382300,SAMN03470228,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655064,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/002/SRR1964322/SRR1964322.fastq.gz,3153269981,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/002/SRR1964322/SRR1964322.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/002/SRR1964322/SRR1964322.fastq.gz,efcc904337b54be9811655c11695a063,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655064_r2,<NA>,GSM1655064,<NA>,Ribosome Profiling pateamineA replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901270,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/002/SRR1964322,2371183323,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/002/SRR1964322,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/002/SRR1964322,9d6099e65546f67e1af066894b139f35,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986370,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655064: Ribosome Profiling pateamineA replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470228,Ribosome Profiling pateamineA replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964323,25168492,1258424600,SAMN03470228,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655064,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/003/SRR1964323/SRR1964323.fastq.gz,1089243612,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/003/SRR1964323/SRR1964323.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/003/SRR1964323/SRR1964323.fastq.gz,6aac12d3ac6e164fdaff94b426e09082,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655064_r3,<NA>,GSM1655064,<NA>,Ribosome Profiling pateamineA replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901270,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/003/SRR1964323,831171144,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/003/SRR1964323,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/003/SRR1964323,f84d0b926f27bc7330bbf5efb4c1ad9b,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964324,35262036,1763101800,SAMN03470229,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655065,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/004/SRR1964324/SRR1964324.fastq.gz,1620893720,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/004/SRR1964324/SRR1964324.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/004/SRR1964324/SRR1964324.fastq.gz,6a75b51aa2225837276cc0b08a596d83,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-10-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655065_r1,<NA>,GSM1655065,<NA>,Ribosome Profiling puromycin replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901269,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/004/SRR1964324,1203976464,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/004/SRR1964324,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/004/SRR1964324,736fd90453e74d515cf8de7d5c2a8333,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964325,24502833,1225141650,SAMN03470229,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655065,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/005/SRR1964325/SRR1964325.fastq.gz,1053581208,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/005/SRR1964325/SRR1964325.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/005/SRR1964325/SRR1964325.fastq.gz,a8e0049bab9c8fc323c210131bf716e3,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-11-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655065_r2,<NA>,GSM1655065,<NA>,Ribosome Profiling puromycin replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901269,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/005/SRR1964325,793801490,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/005/SRR1964325,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/005/SRR1964325,291f72a8a5a2db30f635f582b9f53703,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986371,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655065: Ribosome Profiling puromycin replicate 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470229,Ribosome Profiling puromycin replicate 1,AB 5500xl-W Genetic Analysis System,SRR1964326,27538483,1376924150,SAMN03470229,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655065,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/006/SRR1964326/SRR1964326.fastq.gz,1171968826,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964326/SRR1964326.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/006/SRR1964326/SRR1964326.fastq.gz,7c2c0204e6e7bdd06186bc5d56d7f3e7,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655065_r3,<NA>,GSM1655065,<NA>,Ribosome Profiling puromycin replicate 1,<NA>,<NA>,<NA>,<NA>,SRS901269,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/006/SRR1964326,897319195,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964326,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/006/SRR1964326,4c175b02473426776443b44c07e71238,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964327,34155138,1707756900,SAMN03470230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655066,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/007/SRR1964327/SRR1964327.fastq.gz,1696080308,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964327/SRR1964327.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/007/SRR1964327/SRR1964327.fastq.gz,3176b32bf1f8db16735f66d637f609c5,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-01-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655066_r1,<NA>,GSM1655066,<NA>,Ribosome Profiling puromycin replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901268,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/007/SRR1964327,1232973038,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964327,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/007/SRR1964327,46e76ec67c68b676966c308bc0fa3830,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964328,23825786,1191289300,SAMN03470230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655066,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/008/SRR1964328/SRR1964328.fastq.gz,1157209809,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964328/SRR1964328.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/008/SRR1964328/SRR1964328.fastq.gz,b02d87996f806e90f9e5909571b298d6,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655066_r2,<NA>,GSM1655066,<NA>,Ribosome Profiling puromycin replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901268,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/008/SRR1964328,842207306,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964328,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/008/SRR1964328,2fb6e153af0cf3ad8a7ce2a1d6a8e3b1,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA280809,SRX986372,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,AB 5500xl-W Genetic Analysis System sequencing; GSM1655066: Ribosome Profiling puromycin replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03470230,Ribosome Profiling puromycin replicate 2,AB 5500xl-W Genetic Analysis System,SRR1964329,23506757,1175337850,SAMN03470230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ESC line CGR8,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1655066,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR196/009/SRR1964329/SRR1964329.fastq.gz,1128152427,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964329/SRR1964329.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR196/009/SRR1964329/SRR1964329.fastq.gz,5ec22339a6d498e8bcce9cd174ab0514,2016-01-13,2016-01-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ABI_SOLID,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1655066_r3,<NA>,GSM1655066,<NA>,Ribosome Profiling puromycin replicate 2,<NA>,<NA>,<NA>,<NA>,SRS901268,SRP057051,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR196/009/SRR1964329,829470272,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964329,ftp.sra.ebi.ac.uk/vol1/srr/SRR196/009/SRR1964329,fc70c160a569668de488bdf966648399,129,GSE67741,Ribosome profiling with translation inhibitors reveals pervasive translation in murine ES cells,<NA>,<NA>,SRA252983,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006950,Illumina HiSeq 2000 sequencing; GSM1665594: swarmer M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665594: swarmer M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565828,swarmer M2G ribosome profiling,Illumina HiSeq 2000,SRR1991275,20703090,660389778,SAMN03565828,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,swarmer M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665594,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/005/SRR1991275/SRR1991275.fastq.gz,611054697,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/005/SRR1991275/SRR1991275.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/005/SRR1991275/SRR1991275.fastq.gz,e9389efec858c9d50d7c12b59370bd67,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665594_r1,<NA>,GSM1665594,<NA>,swarmer M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921523,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/005/SRR1991275,509299558,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/005/SRR1991275,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/005/SRR1991275,c251dd078007655b0b5d4ba162c6c97e,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006951,Illumina HiSeq 2000 sequencing; GSM1665595: early stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665595: early stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565829,early stalk M2G ribosome profiling,Illumina HiSeq 2000,SRR1991276,80717688,2400826270,SAMN03565829,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,early stalk M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665595,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/006/SRR1991276/SRR1991276.fastq.gz,1819745924,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/006/SRR1991276/SRR1991276.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/006/SRR1991276/SRR1991276.fastq.gz,2aeb235e40a6db5e8128566227422ce1,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665595_r1,<NA>,GSM1665595,<NA>,early stalk M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921522,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/006/SRR1991276,1685972921,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/006/SRR1991276,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/006/SRR1991276,9275ea9f98a24f9f3de752605a6c2f30,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006952,Illumina HiSeq 2000 sequencing; GSM1665596: late stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665596: late stalk M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565830,late stalk M2G ribosome profiling,Illumina HiSeq 2000,SRR1991277,22993484,674619628,SAMN03565830,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,late stalk M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665596,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/007/SRR1991277/SRR1991277.fastq.gz,608353925,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/007/SRR1991277/SRR1991277.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/007/SRR1991277/SRR1991277.fastq.gz,1cf5858184e14294c2a7bcca049a649c,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665596_r1,<NA>,GSM1665596,<NA>,late stalk M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921520,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/007/SRR1991277,522209187,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/007/SRR1991277,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/007/SRR1991277,e2479eed01df4baaadb7ac846ab71f4e,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006953,Illumina HiSeq 2000 sequencing; GSM1665597: early prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665597: early prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565832,early prediv M2G ribosome profiling,Illumina HiSeq 2000,SRR1991278,17278060,518095336,SAMN03565832,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,early prediv M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665597,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/008/SRR1991278/SRR1991278.fastq.gz,433044006,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/008/SRR1991278/SRR1991278.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/008/SRR1991278/SRR1991278.fastq.gz,cf87b740ff41a055efdf01147c448239,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665597_r1,<NA>,GSM1665597,<NA>,early prediv M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921521,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/008/SRR1991278,385194707,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/008/SRR1991278,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/008/SRR1991278,c7bddfe55fb7f5d36a8648da26ff0215,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006954,Illumina HiSeq 2000 sequencing; GSM1665598: late prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665598: late prediv M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565831,late prediv M2G ribosome profiling,Illumina HiSeq 2000,SRR1991279,20443469,604238206,SAMN03565831,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,late prediv M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665598,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/009/SRR1991279/SRR1991279.fastq.gz,539245341,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/009/SRR1991279/SRR1991279.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/009/SRR1991279/SRR1991279.fastq.gz,e03a098484017ec069bf186ddc841fc4,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665598_r1,<NA>,GSM1665598,<NA>,late prediv M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921519,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/009/SRR1991279,463508161,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/009/SRR1991279,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/009/SRR1991279,f11a957c0f90457020dff84829b5d5c6,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282016,SRX1006955,Illumina HiSeq 2000 sequencing; GSM1665599: post division M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1665599: post division M2G ribosome profiling; Caulobacter vibrioides NA1000; RNA-Seq,565050,Caulobacter vibrioides NA1000,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03565833,post division M2G ribosome profiling,Illumina HiSeq 2000,SRR1991280,13538820,382410272,SAMN03565833,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,post division M2G,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1665599,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR199/000/SRR1991280/SRR1991280.fastq.gz,337062384,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/000/SRR1991280/SRR1991280.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR199/000/SRR1991280/SRR1991280.fastq.gz,85fec4b19099e7c46854b4354d03610b,2016-04-21,2016-04-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1665599_r1,<NA>,GSM1665599,<NA>,post division M2G ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS921518,SRP057599,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR199/000/SRR1991280,293478397,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/000/SRR1991280,ftp.sra.ebi.ac.uk/vol1/srr/SRR199/000/SRR1991280,32ebf9d7f46f85c76cc3e959c21a7c8d,<NA>,GSE68200,Ribosome Profiling Reveals Translational Control During the Caulobacter crescentus cell cycle,<NA>,<NA>,SRA262024,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017035,\"Illumina HiSeq 2500 sequencing; GSM1666805: ATF4-/- ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666805: ATF4-/- ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581119,\"ATF4-/- ER ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007064,19223712,980409312,SAMN03581119,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666805,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007064/SRR2007064.fastq.gz,750389168,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007064/SRR2007064.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007064/SRR2007064.fastq.gz,8f6c670b3016d47afe04f64e588afc81,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666805_r1,<NA>,GSM1666805,<NA>,\"ATF4-/- ER ribosome profiling, untreated (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928315,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007064,640680508,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007064,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007064,fe2ffb90bb9594de33c54906bbb0d686,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017036,\"Illumina HiSeq 2500 sequencing; GSM1666806: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666806: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581120,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007065,20859677,1063843527,SAMN03581120,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666806,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007065/SRR2007065.fastq.gz,778562697,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007065/SRR2007065.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007065/SRR2007065.fastq.gz,6930d0a9c44fd363b9c8578677982594,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666806_r1,<NA>,GSM1666806,<NA>,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928313,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007065,692854781,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007065,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007065,e9746721199cfe4e5a970dd1553daf12,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017037,\"Illumina HiSeq 2500 sequencing; GSM1666807: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666807: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581117,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007066,22014222,1122725322,SAMN03581117,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666807,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007066/SRR2007066.fastq.gz,799111229,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007066/SRR2007066.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007066/SRR2007066.fastq.gz,e3425d411e49815f2c74c72fd74b298c,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666807_r1,<NA>,GSM1666807,<NA>,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928314,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007066,730236745,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007066,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007066,f47b21920913fb106e30344831724ec1,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017038,\"Illumina HiSeq 2500 sequencing; GSM1666808: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666808: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581118,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007067,21063979,1074262929,SAMN03581118,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666808,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007067/SRR2007067.fastq.gz,802860343,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007067/SRR2007067.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007067/SRR2007067.fastq.gz,45851d2b9ee46fa4d764df1f1daa95ea,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666808_r1,<NA>,GSM1666808,<NA>,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928311,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007067,703901779,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007067,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007067,e8af3f8d461113032924cb13ec286afb,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017039,\"Illumina HiSeq 2500 sequencing; GSM1666809: ATF4-/- ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666809: ATF4-/- ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581121,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007068,22870593,1166400243,SAMN03581121,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666809,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007068/SRR2007068.fastq.gz,827346931,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007068/SRR2007068.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007068/SRR2007068.fastq.gz,8f9caf91ee58024d7191b5d43e9b0d4a,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666809_r1,<NA>,GSM1666809,<NA>,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928309,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007068,761030598,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007068,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007068,733dd9b88b3b44315861af0544ca59f4,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017040,\"Illumina HiSeq 2500 sequencing; GSM1666810: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666810: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581122,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007069,21153634,1078835334,SAMN03581122,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666810,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007069/SRR2007069.fastq.gz,824188298,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007069/SRR2007069.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007069/SRR2007069.fastq.gz,8f8349b1cf42766998188e308c813b71,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666810_r1,<NA>,GSM1666810,<NA>,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928310,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007069,701200089,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007069,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007069,ac939927725d2288373a2a59dc75c201,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017041,\"Illumina HiSeq 2500 sequencing; GSM1666811: ATF4-/- ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666811: ATF4-/- ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581123,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007070,23215960,1184013960,SAMN03581123,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666811,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007070/SRR2007070.fastq.gz,862993372,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007070/SRR2007070.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007070/SRR2007070.fastq.gz,36d290b53dad39b809324e3b7db7d4d5,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666811_r1,<NA>,GSM1666811,<NA>,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928312,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007070,777004380,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007070,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007070,830897efa7e4c9c5697bce1b1f8e4320,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017042,\"Illumina HiSeq 2500 sequencing; GSM1666812: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666812: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581124,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007071,22260855,1135303605,SAMN03581124,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666812,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007071/SRR2007071.fastq.gz,853138975,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007071/SRR2007071.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007071/SRR2007071.fastq.gz,99d6270a066ef0813f02c5555ae37f96,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666812_r1,<NA>,GSM1666812,<NA>,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928308,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007071,736749251,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007071,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007071,2578219becc7b4a8d79d89162f9dc48f,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017043,\"Illumina HiSeq 2500 sequencing; GSM1666813: ATF4-/- ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666813: ATF4-/- ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581125,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007072,23138057,1180040907,SAMN03581125,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666813,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007072/SRR2007072.fastq.gz,872623863,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007072/SRR2007072.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007072/SRR2007072.fastq.gz,072706170139147e508769afaae9ded8,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666813_r1,<NA>,GSM1666813,<NA>,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928307,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007072,773009285,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007072,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007072,740b416d7328ccef0ef6bd4b279fbb79,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017044,\"Illumina HiSeq 2500 sequencing; GSM1666814: ATF4-/- cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666814: ATF4-/- cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581126,\"ATF4-/- cytosol ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007073,22787710,1162173210,SAMN03581126,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666814,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007073/SRR2007073.fastq.gz,903435711,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007073/SRR2007073.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007073/SRR2007073.fastq.gz,220de35a12d43b33259a9a6cf914716b,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-04,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666814_r1,<NA>,GSM1666814,<NA>,\"ATF4-/- cytosol ribosome profiling, untreated (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928304,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007073,753090059,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007073,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007073,563c1695ae6712da96be8e5b990f8582,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017045,\"Illumina HiSeq 2500 sequencing; GSM1666815: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666815: ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581127,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007074,20343583,1037522733,SAMN03581127,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666815,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007074/SRR2007074.fastq.gz,755132997,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007074/SRR2007074.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007074/SRR2007074.fastq.gz,a059069c41bca401ec1a2dd346ebd6ef,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666815_r1,<NA>,GSM1666815,<NA>,\"ATF4-/- cytosol ribosome profiling, 0.5 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928305,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007074,666766796,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007074,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007074,5c798521695ce5cdf0f00a7e8c72162a,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017046,\"Illumina HiSeq 2500 sequencing; GSM1666816: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666816: ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581128,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007075,20132638,1026764538,SAMN03581128,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666816,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007075/SRR2007075.fastq.gz,725181242,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007075/SRR2007075.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007075/SRR2007075.fastq.gz,8279b5928641465227fb29b23a458fca,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666816_r1,<NA>,GSM1666816,<NA>,\"ATF4-/- ER ribosome profiling, 0.5 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928303,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007075,660945360,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007075,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007075,fc9c6a0343b5532dc4447b48cfb20704,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017047,\"Illumina HiSeq 2500 sequencing; GSM1666817: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666817: ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581129,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007076,20134079,1026838029,SAMN03581129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666817,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007076/SRR2007076.fastq.gz,766825415,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007076/SRR2007076.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007076/SRR2007076.fastq.gz,045863919500c4cd473e23a38c1b40d4,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666817_r1,<NA>,GSM1666817,<NA>,\"ATF4-/- cytosol ribosome profiling, 1 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928300,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007076,664320760,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007076,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007076,f004f7eee9d2f1c77629d6a43f870bf0,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017048,\"Illumina HiSeq 2500 sequencing; GSM1666818: ATF4-/- ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666818: ATF4-/- ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581130,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007077,22615405,1153385655,SAMN03581130,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666818,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007077/SRR2007077.fastq.gz,838764230,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007077/SRR2007077.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007077/SRR2007077.fastq.gz,9a442e729bdb29ff74aa8c04894dd46b,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-06,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666818_r1,<NA>,GSM1666818,<NA>,\"ATF4-/- ER ribosome profiling, 1 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928301,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007077,746412179,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007077,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007077,3a210f5d4bbe30f1c2218a92eef132cc,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017049,\"Illumina HiSeq 2500 sequencing; GSM1666819: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666819: ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581131,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007078,20873353,1064541003,SAMN03581131,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666819,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007078/SRR2007078.fastq.gz,809451640,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007078/SRR2007078.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007078/SRR2007078.fastq.gz,20f959f50a2b52f192488d2ec1dd77ff,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666819_r1,<NA>,GSM1666819,<NA>,\"ATF4-/- cytosol ribosome profiling, 2 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928302,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007078,685185546,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007078,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007078,696a2e9bd788c0b5ed05b21b6e265f51,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017050,\"Illumina HiSeq 2500 sequencing; GSM1666820: ATF4-/- ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666820: ATF4-/- ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581132,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007079,21371573,1089950223,SAMN03581132,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666820,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007079/SRR2007079.fastq.gz,808345919,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007079/SRR2007079.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007079/SRR2007079.fastq.gz,8ba3bd7ce61b9176c3107262bc9279fd,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666820_r1,<NA>,GSM1666820,<NA>,\"ATF4-/- ER ribosome profiling, 2 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928306,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007079,705688510,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007079,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007079,1c5dccf8b60f15ad84c2be1ff6b108ad,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017051,\"Illumina HiSeq 2500 sequencing; GSM1666821: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666821: ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581133,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007080,21983441,1121155491,SAMN03581133,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666821,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007080/SRR2007080.fastq.gz,842821103,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007080/SRR2007080.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007080/SRR2007080.fastq.gz,4d183125376d25ee8255c700cef460a0,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666821_r1,<NA>,GSM1666821,<NA>,\"ATF4-/- cytosol ribosome profiling, 4 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928298,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007080,722145024,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007080,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007080,c0d3126f02f29da37f6136056bbb6ff6,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017052,\"Illumina HiSeq 2500 sequencing; GSM1666822: ATF4-/- ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666822: ATF4-/- ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581134,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007081,22835371,1164603921,SAMN03581134,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666822,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007081/SRR2007081.fastq.gz,877472441,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007081/SRR2007081.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007081/SRR2007081.fastq.gz,9f908d209df2a8ba13236616ba53ede8,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666822_r1,<NA>,GSM1666822,<NA>,\"ATF4-/- ER ribosome profiling, 4 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928297,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007081,761358628,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007081,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007081,11ee95e2a23a042efea879cf1dc6cc49,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017053,\"Illumina HiSeq 2500 sequencing; GSM1666823: ATF4-/- cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666823: ATF4-/- cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581135,\"ATF4-/- cytosol ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007082,20677901,1054572951,SAMN03581135,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666823,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007082/SRR2007082.fastq.gz,829528862,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007082/SRR2007082.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007082/SRR2007082.fastq.gz,f3ed3768e48b7fa81a672b1397b09067,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666823_r1,<NA>,GSM1666823,<NA>,\"ATF4-/- cytosol ribosome profiling, untreated (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928299,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007082,677564817,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007082,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007082,5670bc0a7195e55b9cead89d0ddd16d6,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017054,\"Illumina HiSeq 2500 sequencing; GSM1666824: ATF4-/- ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666824: ATF4-/- ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581057,\"ATF4-/- ER ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007083,21128656,1077561456,SAMN03581057,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666824,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007083/SRR2007083.fastq.gz,833596080,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007083/SRR2007083.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007083/SRR2007083.fastq.gz,ba7e4cb0045216c95ab062353b851680,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666824_r1,<NA>,GSM1666824,<NA>,\"ATF4-/- ER ribosome profiling, untreated (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928296,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007083,701005394,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007083,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007083,2ab38de9bd68ec8f09fbe1000d3e9702,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017055,\"Illumina HiSeq 2500 sequencing; GSM1666825: eIF2A S51A ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666825: eIF2A S51A ER ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581058,\"eIF2A S51A ER ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007084,16251551,828829101,SAMN03581058,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666825,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007084/SRR2007084.fastq.gz,631573548,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007084/SRR2007084.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007084/SRR2007084.fastq.gz,9e46d758ee60abf3bb75449a92edd41d,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666825_r1,<NA>,GSM1666825,<NA>,\"eIF2A S51A ER ribosome profiling, untreated (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928295,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007084,503324603,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007084,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007084,2499d81716223fc538c4fb699117f22e,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017056,\"Illumina HiSeq 2500 sequencing; GSM1666826: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666826: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581059,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007085,18983118,968139018,SAMN03581059,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666826,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007085/SRR2007085.fastq.gz,719760881,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007085/SRR2007085.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007085/SRR2007085.fastq.gz,a28f4f405041f9dad2781cfaeb7b85dd,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-31,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666826_r1,<NA>,GSM1666826,<NA>,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928294,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007085,598572410,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007085,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007085,c677325a813cbfcb1b67dda5ff08adde,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017057,\"Illumina HiSeq 2500 sequencing; GSM1666827: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666827: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581060,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007086,15833217,807494067,SAMN03581060,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666827,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007086/SRR2007086.fastq.gz,607783609,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007086/SRR2007086.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007086/SRR2007086.fastq.gz,1f635e71bfc5c27a8601a3954f70d1cc,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666827_r1,<NA>,GSM1666827,<NA>,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928293,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007086,483319951,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007086,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007086,e4987565002e7f043b94b79842e3b688,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017058,\"Illumina HiSeq 2500 sequencing; GSM1666828: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666828: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581061,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007087,17567181,895926231,SAMN03581061,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666828,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007087/SRR2007087.fastq.gz,688577887,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007087/SRR2007087.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007087/SRR2007087.fastq.gz,ce097ccdb78cfbf42188985e27f36bee,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666828_r1,<NA>,GSM1666828,<NA>,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928292,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007087,544449351,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007087,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007087,b4c12279fdb51258c2a77c45d7d14643,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017059,\"Illumina HiSeq 2500 sequencing; GSM1666829: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666829: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581062,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007088,19935281,1016699331,SAMN03581062,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666829,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007088/SRR2007088.fastq.gz,771486321,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007088/SRR2007088.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007088/SRR2007088.fastq.gz,c9d3023158af9918cbe16d211c09a0e3,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-02-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666829_r1,<NA>,GSM1666829,<NA>,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928291,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007088,610747127,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007088,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007088,f10e2d5997b389e787cd973d99fdd4e4,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017060,\"Illumina HiSeq 2500 sequencing; GSM1666830: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666830: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581063,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007089,15247010,777597510,SAMN03581063,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666830,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007089/SRR2007089.fastq.gz,596231635,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007089/SRR2007089.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007089/SRR2007089.fastq.gz,f2d01efbe514a7dcd7c1ab72a62a6a59,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666830_r1,<NA>,GSM1666830,<NA>,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928290,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007089,471164437,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007089,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007089,078c2cf9003d350b9b901a011daa541b,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017061,\"Illumina HiSeq 2500 sequencing; GSM1666831: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666831: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581064,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007090,13881251,707943801,SAMN03581064,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666831,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007090/SRR2007090.fastq.gz,542334611,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007090/SRR2007090.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007090/SRR2007090.fastq.gz,6bd40f6314815f60f55fbcb29bb33d52,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666831_r1,<NA>,GSM1666831,<NA>,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928289,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007090,427107957,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007090,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007090,dafa35349e8bbdd7c3714c98c3beadc2,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017062,\"Illumina HiSeq 2500 sequencing; GSM1666832: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666832: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581065,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007091,17489985,891989235,SAMN03581065,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666832,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007091/SRR2007091.fastq.gz,666878071,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007091/SRR2007091.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007091/SRR2007091.fastq.gz,bc93b30a034983489e4eef24171d274b,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666832_r1,<NA>,GSM1666832,<NA>,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928288,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007091,539051124,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007091,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007091,c5f574f09d61529bb7d2c49d33f59008,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017063,\"Illumina HiSeq 2500 sequencing; GSM1666833: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666833: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581066,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1)\",Illumina HiSeq 2500,SRR2007092,15210074,775713774,SAMN03581066,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666833,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007092/SRR2007092.fastq.gz,594365713,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007092/SRR2007092.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007092/SRR2007092.fastq.gz,f6f0969fc0a731b5c061f8bf453fb9bd,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666833_r1,<NA>,GSM1666833,<NA>,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928287,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007092,466368392,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007092,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007092,02759ee8ebe62f6fd6ff43b02e94818b,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017064,\"Illumina HiSeq 2500 sequencing; GSM1666834: eIF2A S51A cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666834: eIF2A S51A cytosol ribosome profiling, untreated (rep 1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581067,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 1)\",Illumina HiSeq 2500,SRR2007093,17142687,874277037,SAMN03581067,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666834,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007093/SRR2007093.fastq.gz,654634689,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007093/SRR2007093.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007093/SRR2007093.fastq.gz,ede29ff73b5cf8b716ce4d377028f9be,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666834_r1,<NA>,GSM1666834,<NA>,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 1)\",<NA>,<NA>,<NA>,<NA>,SRS928286,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007093,529567333,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007093,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007093,567d196bebf7032ba653399ce80de1a4,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017065,\"Illumina HiSeq 2500 sequencing; GSM1666835: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666835: eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581068,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007094,20026160,1021334160,SAMN03581068,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666835,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007094/SRR2007094.fastq.gz,800653365,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007094/SRR2007094.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007094/SRR2007094.fastq.gz,d346dabdbb6aeaa8404f5c6acc24e9b5,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666835_r1,<NA>,GSM1666835,<NA>,\"eIF2A S51A cytosol ribosome profiling, 0.5 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928285,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007094,663529820,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007094,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007094,52ef8d048f2e9e434edce361b0a77e11,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017066,\"Illumina HiSeq 2500 sequencing; GSM1666836: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666836: eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581069,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007095,18703857,953896707,SAMN03581069,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666836,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007095/SRR2007095.fastq.gz,739307211,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007095/SRR2007095.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007095/SRR2007095.fastq.gz,1caccf0c65034e178e24a43c6497c11d,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666836_r1,<NA>,GSM1666836,<NA>,\"eIF2A S51A ER ribosome profiling, 0.5 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928284,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007095,613441638,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007095,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007095,18d519120c5c358cf8fbcc851e62a66e,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017067,\"Illumina HiSeq 2500 sequencing; GSM1666837: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666837: eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581070,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007096,23577690,1202462190,SAMN03581070,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666837,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007096/SRR2007096.fastq.gz,995652091,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007096/SRR2007096.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007096/SRR2007096.fastq.gz,26722fdfae2a805f16fafd3aac0f0723,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666837_r1,<NA>,GSM1666837,<NA>,\"eIF2A S51A cytosol ribosome profiling, 1 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928283,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007096,787183102,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007096,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007096,fc0c1f194211e254aade8f6ddd722f2b,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017068,\"Illumina HiSeq 2500 sequencing; GSM1666838: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666838: eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581071,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007097,24731497,1261306347,SAMN03581071,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666838,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007097/SRR2007097.fastq.gz,1043805775,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007097/SRR2007097.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007097/SRR2007097.fastq.gz,9917bb3ddf2d76c54b654b2acc123df4,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666838_r1,<NA>,GSM1666838,<NA>,\"eIF2A S51A ER ribosome profiling, 1 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928282,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007097,813842844,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007097,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007097,f669ce09a7325e57272d472230e00ee3,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017069,\"Illumina HiSeq 2500 sequencing; GSM1666839: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666839: eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581072,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007098,21716584,1107545784,SAMN03581072,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666839,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007098/SRR2007098.fastq.gz,892319611,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007098/SRR2007098.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007098/SRR2007098.fastq.gz,a822873eac25a2486fda6f82446ec25e,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666839_r1,<NA>,GSM1666839,<NA>,\"eIF2A S51A cytosol ribosome profiling, 2 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928281,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007098,728405442,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007098,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007098,b84fa2650e4ada3d0b3f9e8c1abb3ab0,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017070,\"Illumina HiSeq 2500 sequencing; GSM1666840: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666840: eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581073,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007099,23696982,1208546082,SAMN03581073,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666840,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007099/SRR2007099.fastq.gz,985486968,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007099/SRR2007099.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007099/SRR2007099.fastq.gz,38c04cd34181d48441af95dc67376393,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666840_r1,<NA>,GSM1666840,<NA>,\"eIF2A S51A ER ribosome profiling, 2 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928280,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007099,780755906,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007099,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007099,b9df22558e3adfcbae1a0ed41b240c83,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017071,\"Illumina HiSeq 2500 sequencing; GSM1666841: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666841: eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581074,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007100,24517717,1250403567,SAMN03581074,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666841,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007100/SRR2007100.fastq.gz,1013914917,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007100/SRR2007100.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007100/SRR2007100.fastq.gz,5fb1bc9d649e72ca41145b8bdd6c16e6,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666841_r1,<NA>,GSM1666841,<NA>,\"eIF2A S51A cytosol ribosome profiling, 4 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928279,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007100,811186937,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007100,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007100,058d33c1c9a2e277d8f16469878c1ee5,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017072,\"Illumina HiSeq 2500 sequencing; GSM1666842: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666842: eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581075,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2)\",Illumina HiSeq 2500,SRR2007101,20573167,1049231517,SAMN03581075,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666842,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007101/SRR2007101.fastq.gz,848736857,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007101/SRR2007101.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007101/SRR2007101.fastq.gz,12186db364ee4edefb0dd813fd555ce5,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-08,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666842_r1,<NA>,GSM1666842,<NA>,\"eIF2A S51A ER ribosome profiling, 4 h Tg (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928278,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007101,675656795,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007101,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007101,892a566cebfbc5d67c94a7bf9cb055fd,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017073,\"Illumina HiSeq 2500 sequencing; GSM1666843: eIF2A S51A cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666843: eIF2A S51A cytosol ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581076,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007102,20689853,1055182503,SAMN03581076,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666843,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007102/SRR2007102.fastq.gz,838871113,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007102/SRR2007102.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007102/SRR2007102.fastq.gz,a558f0c856b65b624435ab67510f58ea,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666843_r1,<NA>,GSM1666843,<NA>,\"eIF2A S51A cytosol ribosome profiling, untreated (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928277,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007102,688023808,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007102,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007102,90f28a0826186fd862fa42facd5911cf,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017074,\"Illumina HiSeq 2500 sequencing; GSM1666844: eIF2A S51A ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1666844: eIF2A S51A ER ribosome profiling, untreated (rep 2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581077,\"eIF2A S51A ER ribosome profiling, untreated (rep 2)\",Illumina HiSeq 2500,SRR2007103,20314148,1036021548,SAMN03581077,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1666844,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007103/SRR2007103.fastq.gz,787731407,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007103/SRR2007103.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007103/SRR2007103.fastq.gz,d56bfc6e3a1bc24ee099795ee7ae4c25,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-18,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1666844_r1,<NA>,GSM1666844,<NA>,\"eIF2A S51A ER ribosome profiling, untreated (rep 2)\",<NA>,<NA>,<NA>,<NA>,SRS928276,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007103,668722650,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007103,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007103,d7207c80d8ad83cb2ba6d22ceba22514,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017479,\"Illumina HiSeq 2500 sequencing; GSM1674110: WT cytosol ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674110: WT cytosol ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581028,\"WT cytosol ribosome profiling, 0.5 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007769,17607850,898000350,SAMN03581028,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674110,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007769/SRR2007769.fastq.gz,678618229,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007769/SRR2007769.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007769/SRR2007769.fastq.gz,5b042efe45057cd33724c4189025d078,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674110_r1,<NA>,GSM1674110,<NA>,\"WT cytosol ribosome profiling, 0.5 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928707,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007769,618110962,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007769,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007769,13aae4ffe207fb06af5dc32027cd3cb3,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017480,\"Illumina HiSeq 2500 sequencing; GSM1674111: WT cytosol ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674111: WT cytosol ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581029,\"WT cytosol ribosome profiling, 0.5 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007770,8004515,408230265,SAMN03581029,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674111,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007770/SRR2007770.fastq.gz,289031287,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007770/SRR2007770.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007770/SRR2007770.fastq.gz,21370ff7d9703724b0841d230939aa71,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674111_r1,<NA>,GSM1674111,<NA>,\"WT cytosol ribosome profiling, 0.5 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928709,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007770,271531313,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007770,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007770,42319e0ede92f46cf59b703af21dd823,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017481,\"Illumina HiSeq 2500 sequencing; GSM1674112: WT ER ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674112: WT ER ribosome profiling, 0.5 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581030,\"WT ER ribosome profiling, 0.5 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007771,34274786,1748014086,SAMN03581030,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674112,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007771/SRR2007771.fastq.gz,1248442771,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007771/SRR2007771.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007771/SRR2007771.fastq.gz,a1e39652ed038f8355f959a2585894e4,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674112_r1,<NA>,GSM1674112,<NA>,\"WT ER ribosome profiling, 0.5 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928706,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007771,1413645600,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007771,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007771,c6628673792d2ae3a82cc877b3b1fdac,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017482,\"Illumina HiSeq 2500 sequencing; GSM1674113: WT ER ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674113: WT ER ribosome profiling, 0.5 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581031,\"WT ER ribosome profiling, 0.5 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007772,44962240,2293074240,SAMN03581031,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674113,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007772/SRR2007772.fastq.gz,1542229073,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007772/SRR2007772.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007772/SRR2007772.fastq.gz,4aa6a194f9b0b11f8469924916e3ed9d,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674113_r1,<NA>,GSM1674113,<NA>,\"WT ER ribosome profiling, 0.5 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928705,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007772,1762408762,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007772,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007772,66f8e81c0ef6563f90b4ecddb4511fbb,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017483,\"Illumina HiSeq 2500 sequencing; GSM1674114: WT cytosol ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674114: WT cytosol ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581032,\"WT cytosol ribosome profiling, 1 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007773,60458951,3083406501,SAMN03581032,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674114,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007773/SRR2007773.fastq.gz,2252585883,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007773/SRR2007773.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007773/SRR2007773.fastq.gz,369cd4fed69af2746f754c89b190efd3,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674114_r1,<NA>,GSM1674114,<NA>,\"WT cytosol ribosome profiling, 1 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928704,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007773,2078434804,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007773,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007773,0e33eebd1875ba90019f056762cdab19,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017484,\"Illumina HiSeq 2500 sequencing; GSM1674115: WT cytosol ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674115: WT cytosol ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581033,\"WT cytosol ribosome profiling, 1 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007774,5600537,285627387,SAMN03581033,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674115,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007774/SRR2007774.fastq.gz,199327725,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007774/SRR2007774.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007774/SRR2007774.fastq.gz,c5b27086f1ff363b608a7a409b45974f,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674115_r1,<NA>,GSM1674115,<NA>,\"WT cytosol ribosome profiling, 1 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928703,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007774,189381483,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007774,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007774,f306727af39dce92d82ec32a391ce21a,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017485,\"Illumina HiSeq 2500 sequencing; GSM1674116: WT ER ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674116: WT ER ribosome profiling, 1 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581034,\"WT ER ribosome profiling, 1 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007775,29433660,1501116660,SAMN03581034,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674116,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007775/SRR2007775.fastq.gz,1174166690,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007775/SRR2007775.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007775/SRR2007775.fastq.gz,4b30b50769ad021bf8be0e5aa89ae758,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674116_r1,<NA>,GSM1674116,<NA>,\"WT ER ribosome profiling, 1 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928702,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007775,1062390902,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007775,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007775,e9898a72baf9edb3f58d7a5d48a06d68,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017486,\"Illumina HiSeq 2500 sequencing; GSM1674117: WT ER ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674117: WT ER ribosome profiling, 1 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581035,\"WT ER ribosome profiling, 1 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007776,27741791,1414831341,SAMN03581035,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674117,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007776/SRR2007776.fastq.gz,1028169992,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007776/SRR2007776.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007776/SRR2007776.fastq.gz,55368e16f3f1f610be21b7f0c11d0dda,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-11,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674117_r1,<NA>,GSM1674117,<NA>,\"WT ER ribosome profiling, 1 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928701,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007776,949505496,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007776,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007776,8beb75a4e58358ce976c88fe5c943435,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017487,\"Illumina HiSeq 2500 sequencing; GSM1674118: WT cytosol ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674118: WT cytosol ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581036,\"WT cytosol ribosome profiling, 2 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007777,20792693,1060427343,SAMN03581036,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674118,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007777/SRR2007777.fastq.gz,844932634,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007777/SRR2007777.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007777/SRR2007777.fastq.gz,f20cfad7541ba74099e15c71f35bb004,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674118_r1,<NA>,GSM1674118,<NA>,\"WT cytosol ribosome profiling, 2 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928700,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007777,761164330,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007777,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007777,d27d50d3ed2bdf25352f21f47818c811,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017488,\"Illumina HiSeq 2500 sequencing; GSM1674119: WT cytosol ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674119: WT cytosol ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581037,\"WT cytosol ribosome profiling, 2 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007778,7300567,372328917,SAMN03581037,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674119,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007778/SRR2007778.fastq.gz,280763422,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007778/SRR2007778.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007778/SRR2007778.fastq.gz,9eca630d735350f44c89b2fe880054e0,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674119_r1,<NA>,GSM1674119,<NA>,\"WT cytosol ribosome profiling, 2 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928696,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007778,249002544,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007778,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007778,cf1204c127c95972ac87d891cda438be,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017489,\"Illumina HiSeq 2500 sequencing; GSM1674120: WT ER ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674120: WT ER ribosome profiling, 2 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581038,\"WT ER ribosome profiling, 2 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007779,17578993,896528643,SAMN03581038,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674120,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/009/SRR2007779/SRR2007779.fastq.gz,738198812,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007779/SRR2007779.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/009/SRR2007779/SRR2007779.fastq.gz,0eba54fca18198f18f489339c240f0b3,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674120_r1,<NA>,GSM1674120,<NA>,\"WT ER ribosome profiling, 2 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928698,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/009/SRR2007779,650941318,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007779,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/009/SRR2007779,7e3ae08070ee27f6a9f35209f0e43f8c,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017490,\"Illumina HiSeq 2500 sequencing; GSM1674121: WT ER ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674121: WT ER ribosome profiling, 2 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581039,\"WT ER ribosome profiling, 2 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007780,16585777,845874627,SAMN03581039,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674121,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/000/SRR2007780/SRR2007780.fastq.gz,641203534,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007780/SRR2007780.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/000/SRR2007780/SRR2007780.fastq.gz,20914adaedc08c44fbcc5285fd50eb32,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674121_r1,<NA>,GSM1674121,<NA>,\"WT ER ribosome profiling, 2 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928699,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/000/SRR2007780,568363497,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007780,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/000/SRR2007780,1572d0145ea739e02f6d26644953ddf4,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017491,\"Illumina HiSeq 2500 sequencing; GSM1674122: WT cytosol ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674122: WT cytosol ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581040,\"WT cytosol ribosome profiling, 4 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007781,20561299,1048626249,SAMN03581040,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674122,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/001/SRR2007781/SRR2007781.fastq.gz,836865783,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007781/SRR2007781.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/001/SRR2007781/SRR2007781.fastq.gz,11efc31cf5c6985ef9a7e739b931491a,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674122_r1,<NA>,GSM1674122,<NA>,\"WT cytosol ribosome profiling, 4 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928697,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/001/SRR2007781,734117684,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007781,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/001/SRR2007781,0b8c766c2c42cec67dfa484a5ec31f5c,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017492,\"Illumina HiSeq 2500 sequencing; GSM1674123: WT cytosol ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674123: WT cytosol ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581041,\"WT cytosol ribosome profiling, 4 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007782,15876938,809723838,SAMN03581041,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674123,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/002/SRR2007782/SRR2007782.fastq.gz,621956411,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007782/SRR2007782.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/002/SRR2007782/SRR2007782.fastq.gz,ab3c6bbadbc1477a67c28ca380ba5506,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674123_r1,<NA>,GSM1674123,<NA>,\"WT cytosol ribosome profiling, 4 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928740,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/002/SRR2007782,539161569,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007782,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/002/SRR2007782,2c1ddc50077c23c4ceda5edb0a8996de,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017493,\"Illumina HiSeq 2500 sequencing; GSM1674124: WT ER ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674124: WT ER ribosome profiling, 4 h Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581042,\"WT ER ribosome profiling, 4 h Tg (rep1)\",Illumina HiSeq 2500,SRR2007783,8558520,436484520,SAMN03581042,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674124,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/003/SRR2007783/SRR2007783.fastq.gz,337710153,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007783/SRR2007783.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/003/SRR2007783/SRR2007783.fastq.gz,ac789561869f94ad3785718d8051426d,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674124_r1,<NA>,GSM1674124,<NA>,\"WT ER ribosome profiling, 4 h Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928739,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/003/SRR2007783,294544497,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007783,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/003/SRR2007783,4e7bc1aa73ee762d99d2b98057bbaaf5,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017494,\"Illumina HiSeq 2500 sequencing; GSM1674125: WT ER ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674125: WT ER ribosome profiling, 4 h Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581043,\"WT ER ribosome profiling, 4 h Tg (rep2)\",Illumina HiSeq 2500,SRR2007784,35387962,1804786062,SAMN03581043,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674125,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/004/SRR2007784/SRR2007784.fastq.gz,1372703088,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007784/SRR2007784.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/004/SRR2007784/SRR2007784.fastq.gz,128a5a8b6e817d422a78d9f3f8a75873,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674125_r1,<NA>,GSM1674125,<NA>,\"WT ER ribosome profiling, 4 h Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928736,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/004/SRR2007784,1205300716,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007784,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/004/SRR2007784,79fd52e8941c3d15f77746c3951dec07,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017495,\"Illumina HiSeq 2500 sequencing; GSM1674126: WT cytosol ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674126: WT cytosol ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581044,\"WT cytosol ribosome profiling, no Tg (rep1)\",Illumina HiSeq 2500,SRR2007785,11957757,609845607,SAMN03581044,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674126,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/005/SRR2007785/SRR2007785.fastq.gz,524581280,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007785/SRR2007785.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/005/SRR2007785/SRR2007785.fastq.gz,db6c0f91f3125cf9945e1e132f04549d,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674126_r1,<NA>,GSM1674126,<NA>,\"WT cytosol ribosome profiling, no Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928738,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/005/SRR2007785,441188443,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007785,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/005/SRR2007785,520bc95d371e05bcf6a73c9394905aaa,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017496,\"Illumina HiSeq 2500 sequencing; GSM1674127: WT cytosol ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674127: WT cytosol ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581045,\"WT cytosol ribosome profiling, no Tg (rep2)\",Illumina HiSeq 2500,SRR2007786,14492687,739127037,SAMN03581045,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674127,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/006/SRR2007786/SRR2007786.fastq.gz,599553522,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007786/SRR2007786.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/006/SRR2007786/SRR2007786.fastq.gz,8abaec810ee85d3b4be7065f45cbdb0f,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674127_r1,<NA>,GSM1674127,<NA>,\"WT cytosol ribosome profiling, no Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928737,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/006/SRR2007786,529847650,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007786,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/006/SRR2007786,f36579f0af15be2f4e6cbe53f0e207a8,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017497,\"Illumina HiSeq 2500 sequencing; GSM1674128: WT ER ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674128: WT ER ribosome profiling, no Tg (rep1); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581046,\"WT ER ribosome profiling, no Tg (rep1)\",Illumina HiSeq 2500,SRR2007787,20017242,1020879342,SAMN03581046,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674128,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/007/SRR2007787/SRR2007787.fastq.gz,861705027,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007787/SRR2007787.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/007/SRR2007787/SRR2007787.fastq.gz,d3f5de1b1de549222503840b6cb859b7,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674128_r1,<NA>,GSM1674128,<NA>,\"WT ER ribosome profiling, no Tg (rep1)\",<NA>,<NA>,<NA>,<NA>,SRS928735,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/007/SRR2007787,733770809,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007787,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/007/SRR2007787,73183ad8c131ae49211600a29680aeba,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA282960,SRX1017498,\"Illumina HiSeq 2500 sequencing; GSM1674129: WT ER ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",\"Illumina HiSeq 2500 sequencing; GSM1674129: WT ER ribosome profiling, no Tg (rep2); Mus musculus; OTHER\",10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03581047,\"WT ER ribosome profiling, no Tg (rep2)\",Illumina HiSeq 2500,SRR2007788,14374170,733082670,SAMN03581047,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mouse embryonic fibroblasts,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1674129,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR200/008/SRR2007788/SRR2007788.fastq.gz,642271027,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007788/SRR2007788.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR200/008/SRR2007788/SRR2007788.fastq.gz,8ec48d2fb7b58bd28b2211ffb20d6386,2016-01-05,2016-01-05,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1674129_r1,<NA>,GSM1674129,<NA>,\"WT ER ribosome profiling, no Tg (rep2)\",<NA>,<NA>,<NA>,<NA>,SRS928733,SRP057991,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR200/008/SRR2007788,535239700,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007788,ftp.sra.ebi.ac.uk/vol1/srr/SRR200/008/SRR2007788,44faac9b0c2b3913b793a49a993ba160,<NA>,GSE68265,Dissection of the translational impacts of the PERK pathway,<NA>,<NA>,SRA266203,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285515,SRX1045363,Illumina HiSeq 2000 paired end sequencing; Shield Stage Embryos matched to Ribosome Profiling,Illumina HiSeq 2000 paired end sequencing; Shield Stage Embryos matched to Ribosome Profiling,7955,Danio rerio,RNA-Seq,TRANSCRIPTOMIC,PolyA,SAMN03754651,Danio rerio Shield Stage Embryos RNA-Seq,Illumina HiSeq 2000,SRR2047225,48328189,7345884728,SAMN03754651,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Shield,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Shield Stage Embryos,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_2.fastq.gz,2717968568;2752431632,ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR204/005/SRR2047225/SRR2047225_2.fastq.gz,d675a5ff56f35ae12c314d373fdb5e28;e299e5e14018e5dd9bfff177ff29b3c5,2016-06-02,2016-06-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,76,0,<NA>,<NA>,<NA>,Shield Stage Embryos,<NA>,Shield Stage Embryos,<NA>,Matched to ribosome profiling experiments in SAMN02087561,<NA>,<NA>,<NA>,<NA>,SRS950607,SRP058956,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR204/005/SRR2047225,5187457819,ftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2047225,ftp.sra.ebi.ac.uk/vol1/srr/SRR204/005/SRR2047225,c87460c1d55a7f5acb6c9c4450a824a5,TLAB,PRJNA285515,Danio rerio shield stage transcriptome,<NA>,<NA>,SRA270772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,whole embryos,<NA>\nPRJNA285961,SRX1050328,Illumina HiSeq 2500 sequencing; GSM1704503: 6 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704503: 6 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763400,6 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052911,16250647,828782997,SAMN03763400,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704503,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052911/SRR2052911.fastq.gz,660516715,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052911/SRR2052911.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052911/SRR2052911.fastq.gz,5d70a0d6946721198414107b2e82ffdd,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704503_r1,<NA>,GSM1704503,<NA>,6 h infection cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954647,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052911,548716171,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052911,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052911,054250aa15f193c2cb7d3fcfdd205d14,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050329,Illumina HiSeq 2500 sequencing; GSM1704504: 6 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704504: 6 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763401,6 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052912,18073831,921765381,SAMN03763401,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704504,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052912/SRR2052912.fastq.gz,731689055,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052912/SRR2052912.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052912/SRR2052912.fastq.gz,98c35f6cb0588ba129a39b199ed9570c,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704504_r1,<NA>,GSM1704504,<NA>,6 h infection ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954645,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052912,596472644,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052912,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052912,795aa089f7dd4a0413f8160109172dbb,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050330,Illumina HiSeq 2500 sequencing; GSM1704505: 12 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704505: 12 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763402,12 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052913,18948536,966375336,SAMN03763402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704505,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052913/SRR2052913.fastq.gz,742306819,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052913/SRR2052913.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052913/SRR2052913.fastq.gz,b5eb795fdc779b65d6bacbd2e7a97e5b,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704505_r1,<NA>,GSM1704505,<NA>,12 h infection cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954646,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052913,645140159,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052913,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052913,eafbe6073648fe4e96a8a0faa85af012,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050331,Illumina HiSeq 2500 sequencing; GSM1704506: 12 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704506: 12 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763403,12 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052914,26865068,1370118468,SAMN03763403,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704506,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052914/SRR2052914.fastq.gz,1068535906,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052914/SRR2052914.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052914/SRR2052914.fastq.gz,912072eadf4b0625398dd22b915c6ca9,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704506_r1,<NA>,GSM1704506,<NA>,12 h infection ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954643,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052914,883685185,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052914,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052914,4f0971439abc8c75183ce7891bfa3bcf,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050332,Illumina HiSeq 2500 sequencing; GSM1704507: 24 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704507: 24 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763404,24 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052915,26423896,1347618696,SAMN03763404,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704507,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052915/SRR2052915.fastq.gz,1047935210,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052915/SRR2052915.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052915/SRR2052915.fastq.gz,6fd8c2c8d36164c03a867f22d990434c,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-08,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704507_r1,<NA>,GSM1704507,<NA>,24 h infection cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954644,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052915,886364141,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052915,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052915,9231b6ab3c77f716f06627382ce48b92,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050333,Illumina HiSeq 2500 sequencing; GSM1704508: 24 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704508: 24 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763405,24 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052916,13129805,669620055,SAMN03763405,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704508,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052916/SRR2052916.fastq.gz,512304436,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052916/SRR2052916.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052916/SRR2052916.fastq.gz,5c19fb1e4091b38404cb096b71f9773e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704508_r1,<NA>,GSM1704508,<NA>,24 h infection ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954642,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052916,443224898,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052916,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052916,ba57a629cc3e816a3fb4cd1e17000c6a,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050334,Illumina HiSeq 2500 sequencing; GSM1704509: 40 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704509: 40 h infection cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763406,40 h infection cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052917,31892235,1626503985,SAMN03763406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704509,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052917/SRR2052917.fastq.gz,1255937425,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052917/SRR2052917.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052917/SRR2052917.fastq.gz,eeda9efb38983237abd85ef61eb7e4c1,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704509_r1,<NA>,GSM1704509,<NA>,40 h infection cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954641,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052917,1072954448,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052917,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052917,eedcbee517704fea4cca52a4472bc6a4,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050335,Illumina HiSeq 2500 sequencing; GSM1704510: 40 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704510: 40 h infection ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763407,40 h infection ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052918,34039497,1736014347,SAMN03763407,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704510,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052918/SRR2052918.fastq.gz,1319679438,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052918/SRR2052918.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052918/SRR2052918.fastq.gz,4d1fea49fbcbc8d91d96a6895fef323f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704510_r1,<NA>,GSM1704510,<NA>,40 h infection ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954640,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052918,1130654122,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052918,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052918,a6dcff859d27a167f7f850bb2c26d2e5,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050336,Illumina HiSeq 2500 sequencing; GSM1704511: Interferon treatment cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704511: Interferon treatment cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763408,Interferon treatment cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052919,11895393,606665043,SAMN03763408,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704511,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052919/SRR2052919.fastq.gz,404306606,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052919/SRR2052919.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052919/SRR2052919.fastq.gz,e5145f0d07814453aafea52de3e1918c,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704511_r1,<NA>,GSM1704511,<NA>,Interferon treatment cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954639,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052919,361800895,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052919,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052919,e67ce2dff074b744c26c4977f1ee957c,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050337,Illumina HiSeq 2500 sequencing; GSM1704512: Interferon treatment ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704512: Interferon treatment ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763409,Interferon treatment ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052920,7444252,379656852,SAMN03763409,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704512,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2052920/SRR2052920.fastq.gz,273469590,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052920/SRR2052920.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052920/SRR2052920.fastq.gz,27dd739e0ecad4d0c2ca2269bdd4daa1,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704512_r1,<NA>,GSM1704512,<NA>,Interferon treatment ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954638,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2052920,226413082,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052920,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052920,748cc456e4b4a15adb2f661677dc1021,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050338,Illumina HiSeq 2500 sequencing; GSM1704513: Uninfected cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704513: Uninfected cytosol ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763410,Uninfected cytosol ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052921,14469150,737926650,SAMN03763410,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704513,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052921/SRR2052921.fastq.gz,589836205,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052921/SRR2052921.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052921/SRR2052921.fastq.gz,92c0f81889a02b322794742d1bf92895,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704513_r1,<NA>,GSM1704513,<NA>,Uninfected cytosol ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954636,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052921,486631829,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052921,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052921,e975e06989670e68c011bd7c77db62c0,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050339,Illumina HiSeq 2500 sequencing; GSM1704514: Uninfected ER ribosome profiling (Rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704514: Uninfected ER ribosome profiling (Rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763411,Uninfected ER ribosome profiling (Rep 1),Illumina HiSeq 2500,SRR2052922,14972823,763613973,SAMN03763411,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704514,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052922/SRR2052922.fastq.gz,579242721,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052922/SRR2052922.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052922/SRR2052922.fastq.gz,4fbaa693cdc510204e45865f1622ec42,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704514_r1,<NA>,GSM1704514,<NA>,Uninfected ER ribosome profiling (Rep 1),<NA>,<NA>,<NA>,<NA>,SRS954637,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052922,502267205,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052922,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052922,d4b04d87ba961efdf24c38ab08dd7e6e,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050340,Illumina HiSeq 2500 sequencing; GSM1704515: 6 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704515: 6 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763412,6 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052923,3399547,173376897,SAMN03763412,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704515,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052923/SRR2052923.fastq.gz,121116335,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052923/SRR2052923.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052923/SRR2052923.fastq.gz,646769c128f9e61235155a2c21d9d294,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704515_r1,<NA>,GSM1704515,<NA>,6 h infection cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954635,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052923,106756366,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052923,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052923,c4db794c4c75effceb8cecaaf1bc9f6a,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050341,Illumina HiSeq 2500 sequencing; GSM1704516: 6 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704516: 6 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763413,6 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052924,6698199,341608149,SAMN03763413,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704516,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052924/SRR2052924.fastq.gz,226757806,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052924/SRR2052924.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052924/SRR2052924.fastq.gz,32f7bdb3a5526444b4e0462da74b5a6b,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704516_r1,<NA>,GSM1704516,<NA>,6 h infection ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954634,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052924,197281278,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052924,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052924,8cd8164d867c100bf19d15d55eac53e1,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050342,Illumina HiSeq 2500 sequencing; GSM1704517: 12 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704517: 12 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763414,12 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052925,751226,38312526,SAMN03763414,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704517,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052925/SRR2052925.fastq.gz,26660313,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052925/SRR2052925.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052925/SRR2052925.fastq.gz,ccb54b6794cd782829a7bd298f42154e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704517_r1,<NA>,GSM1704517,<NA>,12 h infection cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954633,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052925,23245437,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052925,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052925,8995f793e7c2527bab444e66ffc851d8,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050343,Illumina HiSeq 2500 sequencing; GSM1704518: 12 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704518: 12 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763415,12 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052926,6988731,356425281,SAMN03763415,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704518,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052926/SRR2052926.fastq.gz,242130604,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052926/SRR2052926.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052926/SRR2052926.fastq.gz,580d9ced8d9954485fc21af9c1e3a25b,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704518_r1,<NA>,GSM1704518,<NA>,12 h infection ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954631,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052926,206843801,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052926,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052926,7ee576d6070731130979cca18f45cdbd,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050344,Illumina HiSeq 2500 sequencing; GSM1704519: 24 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704519: 24 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763416,24 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052927,6813487,347487837,SAMN03763416,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704519,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052927/SRR2052927.fastq.gz,226582521,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052927/SRR2052927.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052927/SRR2052927.fastq.gz,7480cfcbe02b0ab06c4ff11c1a888e78,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704519_r1,<NA>,GSM1704519,<NA>,24 h infection cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954632,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052927,209158272,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052927,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052927,29492b9571b470a557d8846fc42c559e,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050345,Illumina HiSeq 2500 sequencing; GSM1704520: 24 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704520: 24 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763417,24 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052928,6242440,318364440,SAMN03763417,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704520,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052928/SRR2052928.fastq.gz,218169284,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052928/SRR2052928.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052928/SRR2052928.fastq.gz,efab6a701a95c07e65705995a0f2d0ec,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704520_r1,<NA>,GSM1704520,<NA>,24 h infection ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954630,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052928,187096541,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052928,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052928,10a22dfc84b8307d1c01e322340045a1,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050346,Illumina HiSeq 2500 sequencing; GSM1704521: 40 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704521: 40 h infection cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763418,40 h infection cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052929,3488237,177900087,SAMN03763418,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704521,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052929/SRR2052929.fastq.gz,116492876,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052929/SRR2052929.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052929/SRR2052929.fastq.gz,6457832844095f899f6ed5bee8f7667d,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704521_r1,<NA>,GSM1704521,<NA>,40 h infection cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954629,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052929,106983556,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052929,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052929,aa3595dbf04a20f4711e6ad6c6024c45,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050347,Illumina HiSeq 2500 sequencing; GSM1704522: 40 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704522: 40 h infection ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763419,40 h infection ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052930,5860692,298895292,SAMN03763419,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704522,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2052930/SRR2052930.fastq.gz,201307004,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052930/SRR2052930.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052930/SRR2052930.fastq.gz,2ea00875932d9f2fa0f3a3eac5c6522f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704522_r1,<NA>,GSM1704522,<NA>,40 h infection ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954628,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2052930,176388171,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052930,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052930,da137a7b8815991768cd3f341ebde78f,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050348,Illumina HiSeq 2500 sequencing; GSM1704523: Interferon treatment cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704523: Interferon treatment cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763420,Interferon treatment cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052931,4934701,251669751,SAMN03763420,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704523,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052931/SRR2052931.fastq.gz,179178895,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052931/SRR2052931.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052931/SRR2052931.fastq.gz,c40af08efadaad7990c0295eae516ca7,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704523_r1,<NA>,GSM1704523,<NA>,Interferon treatment cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954625,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052931,152110177,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052931,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052931,35899b7f50a3794989f9c485e6cfd76c,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050349,Illumina HiSeq 2500 sequencing; GSM1704524: Interferon treatment ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704524: Interferon treatment ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763423,Interferon treatment ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052932,2421308,123486708,SAMN03763423,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704524,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052932/SRR2052932.fastq.gz,87455545,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052932/SRR2052932.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052932/SRR2052932.fastq.gz,6318cb35db1f77beb3e46758560143ac,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704524_r1,<NA>,GSM1704524,<NA>,Interferon treatment ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954626,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052932,73136507,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052932,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052932,dba2117d8b91b4f4fbb838c6d782261a,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050350,Illumina HiSeq 2500 sequencing; GSM1704525: Uninfected cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704525: Uninfected cytosol ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763424,Uninfected cytosol ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052933,4141321,211207371,SAMN03763424,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704525,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052933/SRR2052933.fastq.gz,142070120,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052933/SRR2052933.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052933/SRR2052933.fastq.gz,bcaf24f5b8c7ae7b72269eadc362bb35,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-29,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704525_r1,<NA>,GSM1704525,<NA>,Uninfected cytosol ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954627,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052933,127438814,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052933,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052933,e6b52b3a5349673a4a7d17169e1a79c6,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050351,Illumina HiSeq 2500 sequencing; GSM1704526: Uninfected ER ribosome profiling (Rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704526: Uninfected ER ribosome profiling (Rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763425,Uninfected ER ribosome profiling (Rep 2),Illumina HiSeq 2500,SRR2052934,8749582,446228682,SAMN03763425,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704526,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052934/SRR2052934.fastq.gz,306689814,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052934/SRR2052934.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052934/SRR2052934.fastq.gz,95966f7a083da9eb025cc4a49c775f4f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704526_r1,<NA>,GSM1704526,<NA>,Uninfected ER ribosome profiling (Rep 2),<NA>,<NA>,<NA>,<NA>,SRS954624,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052934,258351715,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052934,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052934,895626747da74f4503e3e9daf4d148af,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050352,Illumina HiSeq 2500 sequencing; GSM1704527: 6 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704527: 6 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763426,6 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052935,17150043,874652193,SAMN03763426,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704527,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052935/SRR2052935.fastq.gz,546297673,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052935/SRR2052935.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052935/SRR2052935.fastq.gz,f06f10d3d61fc04c993b146858954a96,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704527_r1,<NA>,GSM1704527,<NA>,6 h infection cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954621,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052935,484722030,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052935,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052935,862d178db8a2b22efa57a47b9c6bfd41,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050353,Illumina HiSeq 2500 sequencing; GSM1704528: 6 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704528: 6 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763427,6 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052936,16165711,824451261,SAMN03763427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704528,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052936/SRR2052936.fastq.gz,537860120,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052936/SRR2052936.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052936/SRR2052936.fastq.gz,5274961985ef62d18c8c496cac18afc4,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704528_r1,<NA>,GSM1704528,<NA>,6 h infection ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954622,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052936,467461207,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052936,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052936,6d7dc959a06fbea39c47b8ba52dfeb55,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050354,Illumina HiSeq 2500 sequencing; GSM1704529: 12 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704529: 12 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763428,12 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052937,17650994,900200694,SAMN03763428,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704529,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052937/SRR2052937.fastq.gz,544995368,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052937/SRR2052937.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052937/SRR2052937.fastq.gz,ae412d8e90c3b0df2be5a2e44f7dd45f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704529_r1,<NA>,GSM1704529,<NA>,12 h infection cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954623,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052937,495291193,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052937,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052937,3a2b5a5a82b96a639021d66022080c64,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050355,Illumina HiSeq 2500 sequencing; GSM1704530: 12 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704530: 12 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763421,12 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052938,18658813,951599463,SAMN03763421,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704530,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052938/SRR2052938.fastq.gz,597145789,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052938/SRR2052938.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052938/SRR2052938.fastq.gz,648f171e38eb1bebdd88f720936c155c,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704530_r1,<NA>,GSM1704530,<NA>,12 h infection ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954619,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052938,522733187,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052938,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052938,5ae8a1d224c67a93eac273eea9417d0d,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050356,Illumina HiSeq 2500 sequencing; GSM1704531: 24 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704531: 24 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763422,24 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052939,16313320,831979320,SAMN03763422,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704531,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052939/SRR2052939.fastq.gz,471416473,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052939/SRR2052939.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052939/SRR2052939.fastq.gz,4e8e52ed64f5b75803483badcfa89719,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704531_r1,<NA>,GSM1704531,<NA>,24 h infection cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954620,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052939,454224925,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052939,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052939,a489b132e27d970278a3b1f02bfb1b8d,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050357,Illumina HiSeq 2500 sequencing; GSM1704532: 24 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704532: 24 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763429,24 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052940,15616355,796434105,SAMN03763429,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704532,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2052940/SRR2052940.fastq.gz,462037785,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052940/SRR2052940.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052940/SRR2052940.fastq.gz,3f3cae82cc4728c9ce178ebde3dc7cb5,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704532_r1,<NA>,GSM1704532,<NA>,24 h infection ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954618,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2052940,433201315,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052940,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052940,efb8d0e05118e00e300ba65b994988b1,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050358,Illumina HiSeq 2500 sequencing; GSM1704533: 40 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704533: 40 h infection cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763370,40 h infection cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052941,12189412,621660012,SAMN03763370,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704533,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052941/SRR2052941.fastq.gz,364657903,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052941/SRR2052941.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052941/SRR2052941.fastq.gz,f3b103a0d435860ba008d0e523f500ce,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704533_r1,<NA>,GSM1704533,<NA>,40 h infection cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954617,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052941,340106040,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052941,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052941,4f7aef201bed5cbf3e5c2777bd29e3b1,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050359,Illumina HiSeq 2500 sequencing; GSM1704534: 40 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704534: 40 h infection ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763371,40 h infection ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052942,15349821,782840871,SAMN03763371,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704534,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052942/SRR2052942.fastq.gz,459684690,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052942/SRR2052942.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052942/SRR2052942.fastq.gz,b424e852349a6d0dd4c44b6cffe71163,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704534_r1,<NA>,GSM1704534,<NA>,40 h infection ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954616,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052942,434480433,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052942,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052942,a70f49d9accbe151be6c273b01c3739a,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050360,Illumina HiSeq 2500 sequencing; GSM1704535: Interferon treatment cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704535: Interferon treatment cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763372,Interferon treatment cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052943,12076928,615923328,SAMN03763372,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704535,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052943/SRR2052943.fastq.gz,381088482,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052943/SRR2052943.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052943/SRR2052943.fastq.gz,1ce52c5c3da4209a1a3b0f9f2685dc06,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704535_r1,<NA>,GSM1704535,<NA>,Interferon treatment cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954613,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052943,341742064,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052943,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052943,7349a77d37a806da8c8951d7294148d8,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050361,Illumina HiSeq 2500 sequencing; GSM1704536: Interferon treatment ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704536: Interferon treatment ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763373,Interferon treatment ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052944,12808901,653253951,SAMN03763373,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704536,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052944/SRR2052944.fastq.gz,400780431,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052944/SRR2052944.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052944/SRR2052944.fastq.gz,0e5106f482ef3a5947046b4da3e374a5,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704536_r1,<NA>,GSM1704536,<NA>,Interferon treatment ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954615,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052944,371527031,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052944,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052944,4da9ec8a3d86f57739ef0bc57074d86f,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050362,Illumina HiSeq 2500 sequencing; GSM1704537: Uninfected cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704537: Uninfected cytosol ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763374,Uninfected cytosol ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052945,19895121,1014651171,SAMN03763374,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704537,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052945/SRR2052945.fastq.gz,585529078,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052945/SRR2052945.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052945/SRR2052945.fastq.gz,e5ca182db70a80f4e3b88a98fbe4fbf0,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704537_r1,<NA>,GSM1704537,<NA>,Uninfected cytosol ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954614,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052945,553461880,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052945,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052945,846174ad5effaeea2f3c1d4b247e7de3,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050363,Illumina HiSeq 2500 sequencing; GSM1704538: Uninfected ER ribosome profiling (Rep 3); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704538: Uninfected ER ribosome profiling (Rep 3); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763375,Uninfected ER ribosome profiling (Rep 3),Illumina HiSeq 2500,SRR2052946,22208615,1132639365,SAMN03763375,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704538,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052946/SRR2052946.fastq.gz,684587453,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052946/SRR2052946.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052946/SRR2052946.fastq.gz,a1de690dbf0578f5ef610d1c95f46f1e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704538_r1,<NA>,GSM1704538,<NA>,Uninfected ER ribosome profiling (Rep 3),<NA>,<NA>,<NA>,<NA>,SRS954610,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052946,630856037,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052946,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052946,b1ea52206c49ba68a7656a90ee7744a6,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050364,Illumina HiSeq 2500 sequencing; GSM1704539: 6 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704539: 6 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763376,6 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052947,2910736,148447536,SAMN03763376,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704539,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052947/SRR2052947.fastq.gz,80945511,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052947/SRR2052947.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052947/SRR2052947.fastq.gz,102e3a95bab449d2cd91f5518ddbf23f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704539_r1,<NA>,GSM1704539,<NA>,6 h infection cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954612,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052947,72828681,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052947,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052947,eeb94422d16faa4e4a361dff65f55803,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050365,Illumina HiSeq 2500 sequencing; GSM1704540: 6 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704540: 6 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763377,6 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052948,2339594,119319294,SAMN03763377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704540,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052948/SRR2052948.fastq.gz,66234780,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052948/SRR2052948.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052948/SRR2052948.fastq.gz,c9aa9f6e35e4593b03eb4fb98b989b9e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704540_r1,<NA>,GSM1704540,<NA>,6 h infection ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954611,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052948,59416966,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052948,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052948,71b23173144556b2251af189f7bcd9bc,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050366,Illumina HiSeq 2500 sequencing; GSM1704541: 12 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704541: 12 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763378,12 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052949,3846689,196181139,SAMN03763378,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704541,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052949/SRR2052949.fastq.gz,109248578,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052949/SRR2052949.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052949/SRR2052949.fastq.gz,cfb057c75595fd053a0c4c0bb95d85c1,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704541_r1,<NA>,GSM1704541,<NA>,12 h infection cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954608,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052949,96365344,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052949,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052949,271b25f419d1119c7b342f1c03f615b8,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050367,Illumina HiSeq 2500 sequencing; GSM1704542: 12 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704542: 12 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763379,12 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052950,2870385,146389635,SAMN03763379,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704542,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2052950/SRR2052950.fastq.gz,83590069,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052950/SRR2052950.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052950/SRR2052950.fastq.gz,f671cf51c1ccd524ad77704f0d7ae2aa,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704542_r1,<NA>,GSM1704542,<NA>,12 h infection ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954609,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2052950,71939694,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052950,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052950,3e8c4d9377c169fa682d5d668717e3e3,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050368,Illumina HiSeq 2500 sequencing; GSM1704543: 24 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704543: 24 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763380,24 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052951,2087976,106486776,SAMN03763380,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704543,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052951/SRR2052951.fastq.gz,57128017,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052951/SRR2052951.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052951/SRR2052951.fastq.gz,664e32d68d1762f1df92be6e0bb37f1e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704543_r1,<NA>,GSM1704543,<NA>,24 h infection cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954607,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052951,52339634,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052951,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052951,e0ca7aa42aff0eeb2d6276f0b8ac6ddb,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050369,Illumina HiSeq 2500 sequencing; GSM1704544: 24 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704544: 24 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763381,24 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052952,2291662,116874762,SAMN03763381,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704544,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052952/SRR2052952.fastq.gz,59811304,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052952/SRR2052952.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052952/SRR2052952.fastq.gz,696d11833810f7e6f3863119018154d4,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704544_r1,<NA>,GSM1704544,<NA>,24 h infection ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954606,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052952,56898602,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052952,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052952,616d1a4328db4ff19a1d39b8b749f7f0,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050370,Illumina HiSeq 2500 sequencing; GSM1704545: 40 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704545: 40 h infection cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763382,40 h infection cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052953,8358678,426292578,SAMN03763382,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704545,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052953/SRR2052953.fastq.gz,214298449,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052953/SRR2052953.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052953/SRR2052953.fastq.gz,6edeb41753aa79c05bea502124d0004e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704545_r1,<NA>,GSM1704545,<NA>,40 h infection cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954605,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052953,209465513,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052953,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052953,9fd02ed08f52017929b846e265a40e85,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050371,Illumina HiSeq 2500 sequencing; GSM1704546: 40 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704546: 40 h infection ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763383,40 h infection ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052954,2257987,115157337,SAMN03763383,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704546,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052954/SRR2052954.fastq.gz,62509061,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052954/SRR2052954.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052954/SRR2052954.fastq.gz,0813b71fdb6dadba8b0af2b2a03b3ae6,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-04,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704546_r1,<NA>,GSM1704546,<NA>,40 h infection ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954604,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052954,57259128,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052954,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052954,d9fd03821715a3d7c32153bba8d473f5,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050372,Illumina HiSeq 2500 sequencing; GSM1704547: Interferon treatment cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704547: Interferon treatment cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763384,Interferon treatment cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052955,15968518,814394418,SAMN03763384,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704547,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052955/SRR2052955.fastq.gz,425226696,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052955/SRR2052955.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052955/SRR2052955.fastq.gz,9487b7de6f5ef23becd7a3b14ba712b1,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704547_r1,<NA>,GSM1704547,<NA>,Interferon treatment cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954603,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052955,398249496,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052955,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052955,e6708c7f9a8d254f16d3aff2ecbbb6a3,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050373,Illumina HiSeq 2500 sequencing; GSM1704548: Interferon treatment ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704548: Interferon treatment ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763385,Interferon treatment ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052956,3080222,157091322,SAMN03763385,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704548,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052956/SRR2052956.fastq.gz,92001602,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052956/SRR2052956.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052956/SRR2052956.fastq.gz,17fe4a68f5627e08dca270d36ab23d3e,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704548_r1,<NA>,GSM1704548,<NA>,Interferon treatment ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954602,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052956,78510298,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052956,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052956,c9df730efa67da1bec6e2868e84b24f5,DENV2 (M29095.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050374,Illumina HiSeq 2500 sequencing; GSM1704549: Uninfected cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704549: Uninfected cytosol ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763386,Uninfected cytosol ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052957,2543624,129724824,SAMN03763386,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704549,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052957/SRR2052957.fastq.gz,72037605,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052957/SRR2052957.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052957/SRR2052957.fastq.gz,4fa4637fce37fcac37bcbc0601648402,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704549_r1,<NA>,GSM1704549,<NA>,Uninfected cytosol ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954601,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052957,63615071,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052957,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052957,a23518a9b34a9e23a854823976a25408,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050375,Illumina HiSeq 2500 sequencing; GSM1704550: Uninfected ER ribosome profiling (Rep 4); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704550: Uninfected ER ribosome profiling (Rep 4); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763387,Uninfected ER ribosome profiling (Rep 4),Illumina HiSeq 2500,SRR2052958,2587866,131981166,SAMN03763387,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704550,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052958/SRR2052958.fastq.gz,73062293,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052958/SRR2052958.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052958/SRR2052958.fastq.gz,e0a13f713f45b4d96f3dcffeb440dd96,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704550_r1,<NA>,GSM1704550,<NA>,Uninfected ER ribosome profiling (Rep 4),<NA>,<NA>,<NA>,<NA>,SRS954600,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052958,65445883,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052958,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052958,3594af9d416e2f3edb2141e40f959122,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050400,Illumina HiSeq 2500 sequencing; GSM1704575: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704575: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763467,12 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052983,50720722,2586756822,SAMN03763467,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704575,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052983/SRR2052983.fastq.gz,2021729694,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052983/SRR2052983.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052983/SRR2052983.fastq.gz,3ea27357a0844cbf0e566ec6843dfcb0,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704575_r1,<NA>,GSM1704575,<NA>,12 h DENV1 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954581,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052983,1804546927,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052983,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052983,2e297118221f8497bbac5cbc1de570c7,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050401,Illumina HiSeq 2500 sequencing; GSM1704576: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704576: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763468,24 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052984,32000428,1632021828,SAMN03763468,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704576,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052984/SRR2052984.fastq.gz,1262935221,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052984/SRR2052984.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052984/SRR2052984.fastq.gz,c2ad6b78d64e4efd3f3c0f7d3ac155b0,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704576_r1,<NA>,GSM1704576,<NA>,24 h DENV1 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954580,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052984,1145457633,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052984,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052984,61e1f5585e379bfc9feb4d22c7aa2a74,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050402,Illumina HiSeq 2500 sequencing; GSM1704577: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704577: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763469,48 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052985,29304738,1494541638,SAMN03763469,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704577,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052985/SRR2052985.fastq.gz,1087150031,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052985/SRR2052985.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052985/SRR2052985.fastq.gz,d481bebe36bbe7b936d8f04645e5eacd,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704577_r1,<NA>,GSM1704577,<NA>,48 h DENV1 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954579,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052985,1021555158,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052985,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052985,573608d207bdebb33bf137a98aa5324a,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050403,Illumina HiSeq 2500 sequencing; GSM1704578: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704578: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763470,6 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052986,31483076,1605636876,SAMN03763470,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704578,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052986/SRR2052986.fastq.gz,1253647099,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052986/SRR2052986.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052986/SRR2052986.fastq.gz,3b025d8dcc9b8e54107c3e998983ee56,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704578_r1,<NA>,GSM1704578,<NA>,6 h DENV1 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954578,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052986,1133062126,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052986,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052986,e31ac56726ca2b4307c7b040919fc7a6,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050404,Illumina HiSeq 2500 sequencing; GSM1704579: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704579: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763471,72 h DENV1 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052987,31451899,1604046849,SAMN03763471,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704579,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052987/SRR2052987.fastq.gz,1192592253,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052987/SRR2052987.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052987/SRR2052987.fastq.gz,b0582d0d02be1d4903630efddeee61e5,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704579_r1,<NA>,GSM1704579,<NA>,72 h DENV1 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954577,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052987,1113521701,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052987,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052987,bb79c6832239de0b30098b141598d086,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050405,Illumina HiSeq 2500 sequencing; GSM1704580: Uninfected Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704580: Uninfected Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763472,Uninfected Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052988,30257426,1543128726,SAMN03763472,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704580,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052988/SRR2052988.fastq.gz,1171989944,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052988/SRR2052988.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052988/SRR2052988.fastq.gz,93f931d3237ca1e0fdbcba952dac3c39,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704580_r1,<NA>,GSM1704580,<NA>,Uninfected Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954576,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052988,1074160300,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052988,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052988,cb2c64a21ed3252cfa104ead0339f9d1,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050406,Illumina HiSeq 2500 sequencing; GSM1704581: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704581: 12 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763473,12 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052989,50837419,2592708369,SAMN03763473,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704581,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052989/SRR2052989.fastq.gz,1954892005,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052989/SRR2052989.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052989/SRR2052989.fastq.gz,e016a4eb56de1b6dac506a9a738d9f08,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704581_r1,<NA>,GSM1704581,<NA>,12 h DENV1 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954575,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052989,1830725706,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052989,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052989,06a5e725d3ade7210ac687bbf4ccadc8,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050407,Illumina HiSeq 2500 sequencing; GSM1704582: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704582: 24 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763474,24 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052990,35106005,1790406255,SAMN03763474,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704582,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2052990/SRR2052990.fastq.gz,1382035387,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052990/SRR2052990.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2052990/SRR2052990.fastq.gz,c54dc003679f854a0504c7767ce97eba,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704582_r1,<NA>,GSM1704582,<NA>,24 h DENV1 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954574,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2052990,1259768686,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052990,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2052990,57b7e04af3b9a50621a52340caa27ed5,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050408,Illumina HiSeq 2500 sequencing; GSM1704583: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704583: 48 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763475,48 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052991,35561514,1813637214,SAMN03763475,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704583,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2052991/SRR2052991.fastq.gz,1413729482,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052991/SRR2052991.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2052991/SRR2052991.fastq.gz,cd9bf7720cd0614fe7f9e0b0e07aa346,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-18,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704583_r1,<NA>,GSM1704583,<NA>,48 h DENV1 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954573,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2052991,1271103515,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052991,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2052991,5d04cab8f8f5edd3ad8b2483bae56969,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050409,Illumina HiSeq 2500 sequencing; GSM1704584: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704584: 6 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763476,6 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052992,34060969,1737109419,SAMN03763476,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704584,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2052992/SRR2052992.fastq.gz,1369373978,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052992/SRR2052992.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2052992/SRR2052992.fastq.gz,c15ea19950d3f14e601c416917c2ed60,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704584_r1,<NA>,GSM1704584,<NA>,6 h DENV1 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954572,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2052992,1223851629,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052992,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2052992,3540dc2a7c60687a850a387e064ce761,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050410,Illumina HiSeq 2500 sequencing; GSM1704585: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704585: 72 h DENV1 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763477,72 h DENV1 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052993,35772157,1824380007,SAMN03763477,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704585,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2052993/SRR2052993.fastq.gz,1391576800,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052993/SRR2052993.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2052993/SRR2052993.fastq.gz,a3b78b76954f24ab3362870415665505,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704585_r1,<NA>,GSM1704585,<NA>,72 h DENV1 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954571,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2052993,1282621342,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052993,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2052993,2fa92d15955ebdf410371c3f70ddc780,DENV1 (EU081230.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050411,Illumina HiSeq 2500 sequencing; GSM1704586: Uninfected Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704586: Uninfected Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763478,Uninfected Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2052994,32219386,1643188686,SAMN03763478,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704586,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2052994/SRR2052994.fastq.gz,1296108512,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052994/SRR2052994.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2052994/SRR2052994.fastq.gz,a52a93bb7388439e77560ce0e93d0d9f,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704586_r1,<NA>,GSM1704586,<NA>,Uninfected Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954570,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2052994,1159853535,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052994,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2052994,7f4b4a06acbec662f76035dfe1679cd9,<NA>,GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050412,Illumina HiSeq 2500 sequencing; GSM1704587: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704587: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763479,12 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052995,29483113,1503638763,SAMN03763479,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704587,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/005/SRR2052995/SRR2052995.fastq.gz,1103907991,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052995/SRR2052995.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/005/SRR2052995/SRR2052995.fastq.gz,0e9636dea85b6d0749b5f2898bfec925,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704587_r1,<NA>,GSM1704587,<NA>,12 h DENV2 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954569,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/005/SRR2052995,1034923225,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052995,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/005/SRR2052995,d4be7f57337e16fc1b8802428df237b7,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050413,Illumina HiSeq 2500 sequencing; GSM1704588: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704588: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763480,24 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052996,27309344,1392776544,SAMN03763480,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704588,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2052996/SRR2052996.fastq.gz,1057183041,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052996/SRR2052996.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2052996/SRR2052996.fastq.gz,c3d955899ebf0b485e8928a2b90ebeab,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704588_r1,<NA>,GSM1704588,<NA>,24 h DENV2 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954568,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2052996,973842827,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052996,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2052996,0c7c6416d6425c00a557614856b8d4d4,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050414,Illumina HiSeq 2500 sequencing; GSM1704589: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704589: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763481,48 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052997,36128791,1842568341,SAMN03763481,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704589,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2052997/SRR2052997.fastq.gz,1372852474,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052997/SRR2052997.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2052997/SRR2052997.fastq.gz,93570cb66d873816b987773cd894e353,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704589_r1,<NA>,GSM1704589,<NA>,48 h DENV2 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954567,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2052997,1274482823,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052997,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2052997,c9e2f03070caf466b460ceb5087da9b9,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050415,Illumina HiSeq 2500 sequencing; GSM1704590: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704590: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763482,6 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052998,29795235,1519556985,SAMN03763482,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704590,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2052998/SRR2052998.fastq.gz,1138511215,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052998/SRR2052998.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2052998/SRR2052998.fastq.gz,0c115d2504c6e95c01f0998ecb999add,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704590_r1,<NA>,GSM1704590,<NA>,6 h DENV2 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954566,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2052998,1046303554,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052998,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2052998,845d25c57da032aa775a76c1e9d53791,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050416,Illumina HiSeq 2500 sequencing; GSM1704591: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704591: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 1); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763483,72 h DENV2 infection Total cell lysate ribosome profiling (rep 1),Illumina HiSeq 2500,SRR2052999,46793485,2386467735,SAMN03763483,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704591,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2052999/SRR2052999.fastq.gz,1798060076,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052999/SRR2052999.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2052999/SRR2052999.fastq.gz,0e17df7761aaaf35e1b2a2fdaeeaa938,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704591_r1,<NA>,GSM1704591,<NA>,72 h DENV2 infection Total cell lysate ribosome profiling (rep 1),<NA>,<NA>,<NA>,<NA>,SRS954565,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2052999,1662684855,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052999,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2052999,074a664df058c704188f7f9094491178,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050417,Illumina HiSeq 2500 sequencing; GSM1704592: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704592: 12 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763484,12 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053000,33921101,1729976151,SAMN03763484,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704592,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/000/SRR2053000/SRR2053000.fastq.gz,1277655203,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2053000/SRR2053000.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/000/SRR2053000/SRR2053000.fastq.gz,5c43dca17f1f3688f7fdaf9e8d0151c9,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704592_r1,<NA>,GSM1704592,<NA>,12 h DENV2 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954564,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/000/SRR2053000,1198545857,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2053000,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/000/SRR2053000,eecd9fb3ce129128a07614b9dbae998f,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050418,Illumina HiSeq 2500 sequencing; GSM1704593: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704593: 24 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763485,24 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053001,35278187,1799187537,SAMN03763485,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704593,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/001/SRR2053001/SRR2053001.fastq.gz,1377795975,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2053001/SRR2053001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/001/SRR2053001/SRR2053001.fastq.gz,444386a8733206f94a9e940c6ddcc542,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704593_r1,<NA>,GSM1704593,<NA>,24 h DENV2 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954563,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/001/SRR2053001,1265305434,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2053001,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/001/SRR2053001,ad200c980b71826b212bef1ac1336f84,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050419,Illumina HiSeq 2500 sequencing; GSM1704594: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704594: 48 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763430,48 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053002,32317528,1648193928,SAMN03763430,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704594,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/002/SRR2053002/SRR2053002.fastq.gz,1280636512,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2053002/SRR2053002.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/002/SRR2053002/SRR2053002.fastq.gz,3343f495e79ed277bb5f3f0c1a6b9522,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704594_r1,<NA>,GSM1704594,<NA>,48 h DENV2 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954562,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/002/SRR2053002,1147270312,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2053002,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/002/SRR2053002,4420b7c812d5c3de1587e2277982daf7,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050420,Illumina HiSeq 2500 sequencing; GSM1704595: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704595: 6 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763431,6 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053003,34457090,1757311590,SAMN03763431,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704595,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/003/SRR2053003/SRR2053003.fastq.gz,1426919840,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2053003/SRR2053003.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/003/SRR2053003/SRR2053003.fastq.gz,8aa15eea9f663d5877e567a7a13fb111,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704595_r1,<NA>,GSM1704595,<NA>,6 h DENV2 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954561,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/003/SRR2053003,1240991660,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2053003,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/003/SRR2053003,0b05d0d449c73c8cf5688afdd9951499,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA285961,SRX1050421,Illumina HiSeq 2500 sequencing; GSM1704596: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1704596: 72 h DENV2 infection Total cell lysate ribosome profiling (rep 2); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03763432,72 h DENV2 infection Total cell lysate ribosome profiling (rep 2),Illumina HiSeq 2500,SRR2053004,40495001,2065245051,SAMN03763432,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1704596,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/004/SRR2053004/SRR2053004.fastq.gz,1580667884,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2053004/SRR2053004.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/004/SRR2053004/SRR2053004.fastq.gz,199104c9f41429342369350ac7db31c6,2016-09-02,2016-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1704596_r1,<NA>,GSM1704596,<NA>,72 h DENV2 infection Total cell lysate ribosome profiling (rep 2),<NA>,<NA>,<NA>,<NA>,SRS954560,SRP059187,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/004/SRR2053004,1460095020,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2053004,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/004/SRR2053004,fc3a226c3384d3952e789153424e9f78,DENV2 (EU081177.1),GSE69602,Ribosome profiling analysis of Dengue Virus,<NA>,<NA>,SRA271639,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286218,SRX1054425,Ion Torrent PGM sequencing; GSM1707652: Ribosome profiling no exercise rep1; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707652: Ribosome profiling no exercise rep1; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766237,Ribosome profiling no exercise rep1,Ion Torrent PGM,SRR2057646,2743301,82639361,SAMN03766237,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1707652,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/006/SRR2057646/SRR2057646.fastq.gz,76246296,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2057646/SRR2057646.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/006/SRR2057646/SRR2057646.fastq.gz,2c5a0f658903631c0fd8fa0e8b3d74fa,2016-02-17,2016-02-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ION_TORRENT,<NA>,<NA>,<NA>,2019-10-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1707652_r1,<NA>,GSM1707652,<NA>,Ribosome profiling no exercise rep1,<NA>,<NA>,<NA>,<NA>,SRS957264,SRP059282,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/006/SRR2057646,68248028,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2057646,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/006/SRR2057646,e819081dfed7030cf1a8cd28399a34d6,C57BL/6,GSE69699,Genome-wide translational analysis of the effect of acute endurance exercise on mouse gastrocnemius,<NA>,<NA>,SRA272226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,gastrocnemius,<NA>\nPRJNA286218,SRX1054426,Ion Torrent PGM sequencing; GSM1707653: Ribosome profiling no exercise rep2; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707653: Ribosome profiling no exercise rep2; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766238,Ribosome profiling no exercise rep2,Ion Torrent PGM,SRR2057647,3049697,92492307,SAMN03766238,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1707653,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/007/SRR2057647/SRR2057647.fastq.gz,84893965,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2057647/SRR2057647.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/007/SRR2057647/SRR2057647.fastq.gz,0003ec611b70c5c4224dd35fcdd0e120,2016-02-17,2016-02-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ION_TORRENT,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1707653_r1,<NA>,GSM1707653,<NA>,Ribosome profiling no exercise rep2,<NA>,<NA>,<NA>,<NA>,SRS957263,SRP059282,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/007/SRR2057647,76498431,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2057647,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/007/SRR2057647,92aa7bd4838dc5ab7db7e034d6ebfd0a,C57BL/6,GSE69699,Genome-wide translational analysis of the effect of acute endurance exercise on mouse gastrocnemius,<NA>,<NA>,SRA272226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,gastrocnemius,<NA>\nPRJNA286218,SRX1054427,Ion Torrent PGM sequencing; GSM1707654: Ribosome profiling exercise rep1; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707654: Ribosome profiling exercise rep1; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766239,Ribosome profiling exercise rep1,Ion Torrent PGM,SRR2057648,3565792,104708331,SAMN03766239,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1707654,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/008/SRR2057648/SRR2057648.fastq.gz,97161153,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2057648/SRR2057648.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/008/SRR2057648/SRR2057648.fastq.gz,81d3a410aa2b3713572800277976050d,2016-02-17,2016-02-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ION_TORRENT,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1707654_r1,<NA>,GSM1707654,<NA>,Ribosome profiling exercise rep1,<NA>,<NA>,<NA>,<NA>,SRS957262,SRP059282,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/008/SRR2057648,85691310,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2057648,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/008/SRR2057648,ce6d1aca2d1989089d1afe2536b54385,C57BL/6,GSE69699,Genome-wide translational analysis of the effect of acute endurance exercise on mouse gastrocnemius,<NA>,<NA>,SRA272226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,gastrocnemius,<NA>\nPRJNA286218,SRX1054428,Ion Torrent PGM sequencing; GSM1707655: Ribosome profiling exercise rep2; Mus musculus; RNA-Seq,Ion Torrent PGM sequencing; GSM1707655: Ribosome profiling exercise rep2; Mus musculus; RNA-Seq,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN03766240,Ribosome profiling exercise rep2,Ion Torrent PGM,SRR2057649,2673445,83153884,SAMN03766240,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1707655,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR205/009/SRR2057649/SRR2057649.fastq.gz,76770185,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2057649/SRR2057649.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR205/009/SRR2057649/SRR2057649.fastq.gz,b49b6e7719e0ef171f236e6151aad53f,2016-02-17,2016-02-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ION_TORRENT,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1707655_r1,<NA>,GSM1707655,<NA>,Ribosome profiling exercise rep2,<NA>,<NA>,<NA>,<NA>,SRS957261,SRP059282,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR205/009/SRR2057649,69124758,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2057649,ftp.sra.ebi.ac.uk/vol1/srr/SRR205/009/SRR2057649,d6513dd69bb0892e42f86dc30c1593e8,C57BL/6,GSE69699,Genome-wide translational analysis of the effect of acute endurance exercise on mouse gastrocnemius,<NA>,<NA>,SRA272226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,gastrocnemius,<NA>\nPRJNA286792,SRX1056749,Illumina HiSeq 2500 sequencing; GSM1709012: ER Ribosome profiling Untreated 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709012: ER Ribosome profiling Untreated 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770657,ER Ribosome profiling Untreated 1,Illumina HiSeq 2500,SRR2060674,78647403,4011017553,SAMN03770657,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709012,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/004/SRR2060674/SRR2060674.fastq.gz,3186239183,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/004/SRR2060674/SRR2060674.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/004/SRR2060674/SRR2060674.fastq.gz,9dfc27f0b9e30946f060a851600265dc,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709012_r1,<NA>,GSM1709012,<NA>,ER Ribosome profiling Untreated 1,<NA>,<NA>,<NA>,<NA>,SRS959376,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/004/SRR2060674,2747753959,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/004/SRR2060674,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/004/SRR2060674,bb359cff62feb49d05ae0a008558694f,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056750,Illumina HiSeq 2500 sequencing; GSM1709013: ER Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709013: ER Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770658,ER Ribosome profiling 0.5 h Tg 1,Illumina HiSeq 2500,SRR2060675,10680002,544680102,SAMN03770658,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709013,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/005/SRR2060675/SRR2060675.fastq.gz,399744438,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/005/SRR2060675/SRR2060675.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/005/SRR2060675/SRR2060675.fastq.gz,2d6cf95bb45a1debc08b23148ba6dea7,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709013_r1,<NA>,GSM1709013,<NA>,ER Ribosome profiling 0.5 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959345,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/005/SRR2060675,375456599,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/005/SRR2060675,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/005/SRR2060675,8aa2920e86e0ba3ae3744256971117dc,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056751,Illumina HiSeq 2500 sequencing; GSM1709014: ER Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709014: ER Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770659,ER Ribosome profiling 1 h Tg 1,Illumina HiSeq 2500,SRR2060676,10272599,523902549,SAMN03770659,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709014,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/006/SRR2060676/SRR2060676.fastq.gz,383102414,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/006/SRR2060676/SRR2060676.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/006/SRR2060676/SRR2060676.fastq.gz,27feca83bc11eed516f435289586c093,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709014_r1,<NA>,GSM1709014,<NA>,ER Ribosome profiling 1 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959375,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/006/SRR2060676,358125714,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/006/SRR2060676,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/006/SRR2060676,30aef09b3d0dc6e575bc3fc4d6b850ac,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056752,Illumina HiSeq 2500 sequencing; GSM1709015: ER Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709015: ER Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770660,ER Ribosome profiling 2 h Tg 1,Illumina HiSeq 2500,SRR2060677,9291951,473889501,SAMN03770660,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709015,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/007/SRR2060677/SRR2060677.fastq.gz,342126226,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/007/SRR2060677/SRR2060677.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/007/SRR2060677/SRR2060677.fastq.gz,98e5f63d88327f2777b0d94ed2524670,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-10,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709015_r1,<NA>,GSM1709015,<NA>,ER Ribosome profiling 2 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959374,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/007/SRR2060677,325710047,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/007/SRR2060677,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/007/SRR2060677,126d6d154d0483a13100cf7d47c9b382,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056753,Illumina HiSeq 2500 sequencing; GSM1709016: ER Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709016: ER Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770661,ER Ribosome profiling 4 h Tg 1,Illumina HiSeq 2500,SRR2060678,7836885,399681135,SAMN03770661,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709016,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/008/SRR2060678/SRR2060678.fastq.gz,286859721,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/008/SRR2060678/SRR2060678.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/008/SRR2060678/SRR2060678.fastq.gz,89becc8c01d9b90a0cc2c0c90b973a7e,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709016_r1,<NA>,GSM1709016,<NA>,ER Ribosome profiling 4 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959373,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/008/SRR2060678,272613076,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/008/SRR2060678,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/008/SRR2060678,83d122425e8efb56ea39fc3763de50ed,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056754,Illumina HiSeq 2500 sequencing; GSM1709017: ER Ribosome profiling Untreated 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709017: ER Ribosome profiling Untreated 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770662,ER Ribosome profiling Untreated 2,Illumina HiSeq 2500,SRR2060679,12238357,624156207,SAMN03770662,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709017,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/009/SRR2060679/SRR2060679.fastq.gz,499715493,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/009/SRR2060679/SRR2060679.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/009/SRR2060679/SRR2060679.fastq.gz,10c1c15d85ad9e2cca9712acc5e6d096,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709017_r1,<NA>,GSM1709017,<NA>,ER Ribosome profiling Untreated 2,<NA>,<NA>,<NA>,<NA>,SRS959372,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/009/SRR2060679,448972010,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/009/SRR2060679,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/009/SRR2060679,7e01f945c8adfe9e31b266de9b8e8fd5,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056755,Illumina HiSeq 2500 sequencing; GSM1709018: ER Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709018: ER Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770663,ER Ribosome profiling 0.5 h Tg 2,Illumina HiSeq 2500,SRR2060680,27383252,1396545852,SAMN03770663,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709018,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/000/SRR2060680/SRR2060680.fastq.gz,1075486363,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/000/SRR2060680/SRR2060680.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/000/SRR2060680/SRR2060680.fastq.gz,23aea4429f451ca23a17de86b27a0ffb,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709018_r1,<NA>,GSM1709018,<NA>,ER Ribosome profiling 0.5 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959371,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/000/SRR2060680,990037662,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/000/SRR2060680,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/000/SRR2060680,1d4bfa6325dd72c87992906936c5443a,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056756,Illumina HiSeq 2500 sequencing; GSM1709019: ER Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709019: ER Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770664,ER Ribosome profiling 1 h Tg 2,Illumina HiSeq 2500,SRR2060681,8062047,411164397,SAMN03770664,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709019,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/001/SRR2060681/SRR2060681.fastq.gz,327766947,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/001/SRR2060681/SRR2060681.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/001/SRR2060681/SRR2060681.fastq.gz,89003a7d706105ed05d9a4ff572ee5af,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709019_r1,<NA>,GSM1709019,<NA>,ER Ribosome profiling 1 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959370,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/001/SRR2060681,298774926,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/001/SRR2060681,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/001/SRR2060681,0939cb33f573701563ad116f9f043eb6,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056757,Illumina HiSeq 2500 sequencing; GSM1709020: ER Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709020: ER Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770665,ER Ribosome profiling 2 h Tg 2,Illumina HiSeq 2500,SRR2060682,18856341,961673391,SAMN03770665,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709020,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/002/SRR2060682/SRR2060682.fastq.gz,759206739,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/002/SRR2060682/SRR2060682.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/002/SRR2060682/SRR2060682.fastq.gz,c050d543d3aae747406ad7102cdf161b,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709020_r1,<NA>,GSM1709020,<NA>,ER Ribosome profiling 2 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959369,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/002/SRR2060682,693705987,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/002/SRR2060682,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/002/SRR2060682,c254bae6de7355ba5c2f1a62fa2e9690,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056758,Illumina HiSeq 2500 sequencing; GSM1709021: ER Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709021: ER Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770666,ER Ribosome profiling 4 h Tg 2,Illumina HiSeq 2500,SRR2060683,8565355,436833105,SAMN03770666,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709021,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/003/SRR2060683/SRR2060683.fastq.gz,349629339,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/003/SRR2060683/SRR2060683.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/003/SRR2060683/SRR2060683.fastq.gz,d34010a308c59a4c026273cb1fa9f7f8,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709021_r1,<NA>,GSM1709021,<NA>,ER Ribosome profiling 4 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959368,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/003/SRR2060683,316015841,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/003/SRR2060683,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/003/SRR2060683,2aae523bd2dddc80a78812276ce008e2,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056759,Illumina HiSeq 2500 sequencing; GSM1709022: Cytosol Ribosome profiling Untreated 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709022: Cytosol Ribosome profiling Untreated 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770667,Cytosol Ribosome profiling Untreated 1,Illumina HiSeq 2500,SRR2060684,4063729,207250179,SAMN03770667,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709022,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/004/SRR2060684/SRR2060684.fastq.gz,170941447,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/004/SRR2060684/SRR2060684.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/004/SRR2060684/SRR2060684.fastq.gz,3ec5670579c6ed3cd4c4ecfb09266765,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709022_r1,<NA>,GSM1709022,<NA>,Cytosol Ribosome profiling Untreated 1,<NA>,<NA>,<NA>,<NA>,SRS959367,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/004/SRR2060684,147926777,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/004/SRR2060684,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/004/SRR2060684,6567a85de03e8d6419e8aff9aaf68b9d,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056760,Illumina HiSeq 2500 sequencing; GSM1709023: Cytosol Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709023: Cytosol Ribosome profiling 0.5 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770668,Cytosol Ribosome profiling 0.5 h Tg 1,Illumina HiSeq 2500,SRR2060685,29053643,1481735793,SAMN03770668,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709023,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/005/SRR2060685/SRR2060685.fastq.gz,1071623202,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/005/SRR2060685/SRR2060685.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/005/SRR2060685/SRR2060685.fastq.gz,0137a4cc90285dc10d092a7bb0b17969,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709023_r1,<NA>,GSM1709023,<NA>,Cytosol Ribosome profiling 0.5 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959366,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/005/SRR2060685,1006914412,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/005/SRR2060685,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/005/SRR2060685,1e8ab24cb3f903a8ec243f3cea15eb40,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056761,Illumina HiSeq 2500 sequencing; GSM1709024: Cytosol Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709024: Cytosol Ribosome profiling 1 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770669,Cytosol Ribosome profiling 1 h Tg 1,Illumina HiSeq 2500,SRR2060686,64964205,3313174455,SAMN03770669,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709024,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/006/SRR2060686/SRR2060686.fastq.gz,2409671047,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/006/SRR2060686/SRR2060686.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/006/SRR2060686/SRR2060686.fastq.gz,2be8bdf7f97cccb731a9362303312f14,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709024_r1,<NA>,GSM1709024,<NA>,Cytosol Ribosome profiling 1 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959365,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/006/SRR2060686,2261355846,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/006/SRR2060686,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/006/SRR2060686,aaf1ecb5153178e7703c120025472c65,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056762,Illumina HiSeq 2500 sequencing; GSM1709025: Cytosol Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709025: Cytosol Ribosome profiling 2 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770670,Cytosol Ribosome profiling 2 h Tg 1,Illumina HiSeq 2500,SRR2060687,21767084,1110121284,SAMN03770670,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709025,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/007/SRR2060687/SRR2060687.fastq.gz,770252947,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/007/SRR2060687/SRR2060687.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/007/SRR2060687/SRR2060687.fastq.gz,bd6400838e8e30f14c9858672e45ea5d,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709025_r1,<NA>,GSM1709025,<NA>,Cytosol Ribosome profiling 2 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959364,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/007/SRR2060687,742538885,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/007/SRR2060687,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/007/SRR2060687,83227ebfd7aa19b7d328b43f67e307b4,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056763,Illumina HiSeq 2500 sequencing; GSM1709026: Cytosol Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709026: Cytosol Ribosome profiling 4 h Tg 1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770671,Cytosol Ribosome profiling 4 h Tg 1,Illumina HiSeq 2500,SRR2060688,24180440,1233202440,SAMN03770671,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709026,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/008/SRR2060688/SRR2060688.fastq.gz,872718407,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/008/SRR2060688/SRR2060688.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/008/SRR2060688/SRR2060688.fastq.gz,187cce4a0eb0488085afe5d5e4457452,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709026_r1,<NA>,GSM1709026,<NA>,Cytosol Ribosome profiling 4 h Tg 1,<NA>,<NA>,<NA>,<NA>,SRS959363,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/008/SRR2060688,841135310,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/008/SRR2060688,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/008/SRR2060688,6851fa6874f19ce36f3befd3e2fa37ef,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056764,Illumina HiSeq 2500 sequencing; GSM1709027: Cytosol Ribosome profiling Untreated 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709027: Cytosol Ribosome profiling Untreated 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770672,Cytosol Ribosome profiling Untreated 2,Illumina HiSeq 2500,SRR2060689,10236103,522041253,SAMN03770672,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709027,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/009/SRR2060689/SRR2060689.fastq.gz,456513537,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/009/SRR2060689/SRR2060689.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/009/SRR2060689/SRR2060689.fastq.gz,03be5e8f9c0e746582d2ebc4ef08e6b4,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709027_r1,<NA>,GSM1709027,<NA>,Cytosol Ribosome profiling Untreated 2,<NA>,<NA>,<NA>,<NA>,SRS959362,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/009/SRR2060689,377646052,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/009/SRR2060689,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/009/SRR2060689,610597709237ff0b31ad9903a2b530aa,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056765,Illumina HiSeq 2500 sequencing; GSM1709028: Cytosol Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709028: Cytosol Ribosome profiling 0.5 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770673,Cytosol Ribosome profiling 0.5 h Tg 2,Illumina HiSeq 2500,SRR2060690,16977612,865858212,SAMN03770673,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709028,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/000/SRR2060690/SRR2060690.fastq.gz,728793630,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/000/SRR2060690/SRR2060690.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/000/SRR2060690/SRR2060690.fastq.gz,9a6f60b9ebe28f3f179e417045d03f2b,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709028_r1,<NA>,GSM1709028,<NA>,Cytosol Ribosome profiling 0.5 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959361,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/000/SRR2060690,627877644,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/000/SRR2060690,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/000/SRR2060690,b627f0bcb8e3b3ace4e7d07a6af57aa1,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056766,Illumina HiSeq 2500 sequencing; GSM1709029: Cytosol Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709029: Cytosol Ribosome profiling 1 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770674,Cytosol Ribosome profiling 1 h Tg 2,Illumina HiSeq 2500,SRR2060691,19996790,1019836290,SAMN03770674,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709029,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/001/SRR2060691/SRR2060691.fastq.gz,795062206,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/001/SRR2060691/SRR2060691.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/001/SRR2060691/SRR2060691.fastq.gz,96a59f3222a1054379241a8c144aaef2,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709029_r1,<NA>,GSM1709029,<NA>,Cytosol Ribosome profiling 1 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959360,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/001/SRR2060691,726259419,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/001/SRR2060691,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/001/SRR2060691,3815078acc84fd3a62f777f461903c07,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056767,Illumina HiSeq 2500 sequencing; GSM1709030: Cytosol Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709030: Cytosol Ribosome profiling 2 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770675,Cytosol Ribosome profiling 2 h Tg 2,Illumina HiSeq 2500,SRR2060692,10192777,519831627,SAMN03770675,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709030,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/002/SRR2060692/SRR2060692.fastq.gz,411329443,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/002/SRR2060692/SRR2060692.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/002/SRR2060692/SRR2060692.fastq.gz,6d70850d9364a0338e2ae37bfff2b0ad,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-31,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709030_r1,<NA>,GSM1709030,<NA>,Cytosol Ribosome profiling 2 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959359,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/002/SRR2060692,373319371,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/002/SRR2060692,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/002/SRR2060692,2f2a34e2d47a1651b6898aa6aa53ed6d,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA286792,SRX1056768,Illumina HiSeq 2500 sequencing; GSM1709031: Cytosol Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM1709031: Cytosol Ribosome profiling 4 h Tg 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN03770676,Cytosol Ribosome profiling 4 h Tg 2,Illumina HiSeq 2500,SRR2060693,24131402,1230701502,SAMN03770676,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryonic fibroblast,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1709031,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR206/003/SRR2060693/SRR2060693.fastq.gz,948180191,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/003/SRR2060693/SRR2060693.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/003/SRR2060693/SRR2060693.fastq.gz,b9682eb8d88f2ab8a246d4fb62390be5,2015-10-02,2015-10-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1709031_r1,<NA>,GSM1709031,<NA>,Cytosol Ribosome profiling 4 h Tg 2,<NA>,<NA>,<NA>,<NA>,SRS959358,SRP059390,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR206/003/SRR2060693,873899622,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/003/SRR2060693,ftp.sra.ebi.ac.uk/vol1/srr/SRR206/003/SRR2060693,e64d07ec8163e2b9bbb7988146b6fd6e,<NA>,GSE69800,Ribosome profiling analysis of GADD34 null cells,<NA>,<NA>,SRA272681,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX1070446,Illumina HiSeq 2000 sequencing; GSM1717890: Ribosome profiling SiControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717890: Ribosome profiling SiControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787322,Ribosome profiling SiControl-RPF,Illumina HiSeq 2000,SRR2075417,29365657,996912114,SAMN03787322,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1717890,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR207/007/SRR2075417/SRR2075417.fastq.gz,892429572,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/007/SRR2075417/SRR2075417.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/007/SRR2075417/SRR2075417.fastq.gz,7cb6b6433e2dfd82704608ca1d03eea2,2015-10-03,2015-10-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1717890_r1,<NA>,GSM1717890,<NA>,Ribosome profiling SiControl-RPF,<NA>,<NA>,<NA>,<NA>,SRS969577,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR207/007/SRR2075417,779922168,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/007/SRR2075417,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/007/SRR2075417,f43459557b6906a1182640ecb44fa9ef,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX1070447,Illumina HiSeq 2000 sequencing; GSM1717891: Ribosome profiling SiControl-input-poly(A); Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717891: Ribosome profiling SiControl-input-poly(A); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787323,Ribosome profiling SiControl-input-poly(A),Illumina HiSeq 2000,SRR2075418,62485200,2952569004,SAMN03787323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1717891,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR207/008/SRR2075418/SRR2075418.fastq.gz,2740197190,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/008/SRR2075418/SRR2075418.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/008/SRR2075418/SRR2075418.fastq.gz,a7d1a70dafb9797053e7882d709b91fe,2015-10-03,2015-10-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1717891_r1,<NA>,GSM1717891,<NA>,Ribosome profiling SiControl-input-poly(A),<NA>,<NA>,<NA>,<NA>,SRS969576,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR207/008/SRR2075418,2232839017,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/008/SRR2075418,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/008/SRR2075418,0c6619f9da923cd218013680987062d0,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX1070448,Illumina HiSeq 2000 sequencing; GSM1717892: Ribosome profiling SiMETTL3-RPF; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717892: Ribosome profiling SiMETTL3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787324,Ribosome profiling SiMETTL3-RPF,Illumina HiSeq 2000,SRR2075419,25609568,1012594286,SAMN03787324,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1717892,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR207/009/SRR2075419/SRR2075419.fastq.gz,888198510,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/009/SRR2075419/SRR2075419.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/009/SRR2075419/SRR2075419.fastq.gz,983b351efca20a22f9e5d3740ce76964,2015-09-22,2015-09-22,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1717892_r1,<NA>,GSM1717892,<NA>,Ribosome profiling SiMETTL3-RPF,<NA>,<NA>,<NA>,<NA>,SRS969575,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR207/009/SRR2075419,776527631,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/009/SRR2075419,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/009/SRR2075419,58554e1bb7111ac36e7bccdfdb0f1b52,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA268354,SRX1070449,Illumina HiSeq 2000 sequencing; GSM1717893: Ribosome profiling SiMETTL3-input-poly(A); Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1717893: Ribosome profiling SiMETTL3-input-poly(A); Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03787325,Ribosome profiling SiMETTL3-input-poly(A),Illumina HiSeq 2000,SRR2075420,44646468,4412410928,SAMN03787325,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1717893,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR207/000/SRR2075420/SRR2075420.fastq.gz,3833767567,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/000/SRR2075420/SRR2075420.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR207/000/SRR2075420/SRR2075420.fastq.gz,86eabf1a40fcc35cbefac512c120abc1,2015-09-26,2015-09-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1717893_r1,<NA>,GSM1717893,<NA>,Ribosome profiling SiMETTL3-input-poly(A),<NA>,<NA>,<NA>,<NA>,SRS969574,SRP050213,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR207/000/SRR2075420,3045648806,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/000/SRR2075420,ftp.sra.ebi.ac.uk/vol1/srr/SRR207/000/SRR2075420,5d89513cc44fa316df0dcabd70863005,<NA>,GSE63591,N6-methyladenosine Modulates Messenger RNA Translation Efficiency,<NA>,<NA>,SRA204377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092012,Illumina HiSeq 2500 sequencing; GSM1819217: Rluc control ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819217: Rluc control ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855826,Rluc control ribosome profiling rep1,Illumina HiSeq 2500,SRR2096964,40053175,2002658750,SAMN03855826,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819217,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/004/SRR2096964/SRR2096964.fastq.gz,1465741921,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/004/SRR2096964/SRR2096964.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/004/SRR2096964/SRR2096964.fastq.gz,b0848c680e80bd92a3b73f7388b48926,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819217_r1,<NA>,GSM1819217,<NA>,Rluc control ribosome profiling rep1,<NA>,<NA>,<NA>,<NA>,SRS987649,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/004/SRR2096964,1310323170,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/004/SRR2096964,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/004/SRR2096964,678d9ba32a45430a160a70b50c4648f3,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092013,Illumina HiSeq 2500 sequencing; GSM1819218: DDX3 WT ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819218: DDX3 WT ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855827,DDX3 WT ribosome profiling rep1,Illumina HiSeq 2500,SRR2096965,27500547,1375027350,SAMN03855827,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819218,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/005/SRR2096965/SRR2096965.fastq.gz,976847066,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/005/SRR2096965/SRR2096965.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/005/SRR2096965/SRR2096965.fastq.gz,51b507b9828ac799d450c43a7d559f1b,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819218_r1,<NA>,GSM1819218,<NA>,DDX3 WT ribosome profiling rep1,<NA>,<NA>,<NA>,<NA>,SRS987648,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/005/SRR2096965,893771023,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/005/SRR2096965,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/005/SRR2096965,d688e32e3ef8b9ae2800a77166ed7746,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092014,Illumina HiSeq 2500 sequencing; GSM1819219: DDX3 R534H ribosome profiling rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819219: DDX3 R534H ribosome profiling rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855828,DDX3 R534H ribosome profiling rep1,Illumina HiSeq 2500,SRR2096966,25807053,1290352650,SAMN03855828,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819219,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/006/SRR2096966/SRR2096966.fastq.gz,912572329,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/006/SRR2096966/SRR2096966.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/006/SRR2096966/SRR2096966.fastq.gz,755c4432d0f43cd35e7c506841432c40,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819219_r1,<NA>,GSM1819219,<NA>,DDX3 R534H ribosome profiling rep1,<NA>,<NA>,<NA>,<NA>,SRS987647,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/006/SRR2096966,839174211,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/006/SRR2096966,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/006/SRR2096966,7dd1d48550ab04b24822bf7b11290618,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092015,Illumina HiSeq 2500 sequencing; GSM1819220: Rluc control ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819220: Rluc control ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855829,Rluc control ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096967,27874521,1393726050,SAMN03855829,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819220,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/007/SRR2096967/SRR2096967.fastq.gz,935532995,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/007/SRR2096967/SRR2096967.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/007/SRR2096967/SRR2096967.fastq.gz,e39e5736394edfe0b11fd6de7483eecf,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819220_r1,<NA>,GSM1819220,<NA>,Rluc control ribosome profiling with sodium arsenite rep1,<NA>,<NA>,<NA>,<NA>,SRS987646,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/007/SRR2096967,892771073,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/007/SRR2096967,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/007/SRR2096967,626b9f1cc1bd5d8f8c36bcfe412e7ab6,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092016,Illumina HiSeq 2500 sequencing; GSM1819221: DDX3 WT ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819221: DDX3 WT ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855830,DDX3 WT ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096968,19408923,970446150,SAMN03855830,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819221,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/008/SRR2096968/SRR2096968.fastq.gz,625973666,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/008/SRR2096968/SRR2096968.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/008/SRR2096968/SRR2096968.fastq.gz,63a1d87bbfcbbfd526da64da93637e66,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819221_r1,<NA>,GSM1819221,<NA>,DDX3 WT ribosome profiling with sodium arsenite rep1,<NA>,<NA>,<NA>,<NA>,SRS987645,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/008/SRR2096968,609362499,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/008/SRR2096968,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/008/SRR2096968,c5ffaf51ad819403a2d59f180aa710c3,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092017,Illumina HiSeq 2500 sequencing; GSM1819222: DDX3 R534H ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819222: DDX3 R534H ribosome profiling with sodium arsenite rep1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855831,DDX3 R534H ribosome profiling with sodium arsenite rep1,Illumina HiSeq 2500,SRR2096969,26932125,1346606250,SAMN03855831,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819222,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/009/SRR2096969/SRR2096969.fastq.gz,900156989,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/009/SRR2096969/SRR2096969.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/009/SRR2096969/SRR2096969.fastq.gz,7276f34712a737e8290867775f20e9d7,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819222_r1,<NA>,GSM1819222,<NA>,DDX3 R534H ribosome profiling with sodium arsenite rep1,<NA>,<NA>,<NA>,<NA>,SRS987644,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/009/SRR2096969,863146548,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/009/SRR2096969,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/009/SRR2096969,ffc4ac7724110618444175e10519e32a,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092018,Illumina HiSeq 2500 sequencing; GSM1819223: Rluc control ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819223: Rluc control ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855832,Rluc control ribosome profiling rep2,Illumina HiSeq 2500,SRR2096970,32077723,1603886150,SAMN03855832,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819223,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/000/SRR2096970/SRR2096970.fastq.gz,1125039207,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/000/SRR2096970/SRR2096970.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/000/SRR2096970/SRR2096970.fastq.gz,d6ac02ab3edc2dfcad7ab54469745a3a,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819223_r1,<NA>,GSM1819223,<NA>,Rluc control ribosome profiling rep2,<NA>,<NA>,<NA>,<NA>,SRS987643,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/000/SRR2096970,1021073127,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/000/SRR2096970,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/000/SRR2096970,0e3ffe5e7e0d6dfa316d1d2587768337,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092019,Illumina HiSeq 2500 sequencing; GSM1819224: DDX3 WT ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819224: DDX3 WT ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855833,DDX3 WT ribosome profiling rep2,Illumina HiSeq 2500,SRR2096971,26066702,1303335100,SAMN03855833,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819224,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/001/SRR2096971/SRR2096971.fastq.gz,884558660,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/001/SRR2096971/SRR2096971.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/001/SRR2096971/SRR2096971.fastq.gz,8e983e20e4dc826f642991f997fba914,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819224_r1,<NA>,GSM1819224,<NA>,DDX3 WT ribosome profiling rep2,<NA>,<NA>,<NA>,<NA>,SRS987642,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/001/SRR2096971,820982476,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/001/SRR2096971,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/001/SRR2096971,2273b59c1ead508b66a4371d0f534997,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092020,Illumina HiSeq 2500 sequencing; GSM1819225: DDX3 R534H ribosome profiling rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819225: DDX3 R534H ribosome profiling rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855834,DDX3 R534H ribosome profiling rep2,Illumina HiSeq 2500,SRR2096972,20450140,1022507000,SAMN03855834,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819225,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/002/SRR2096972/SRR2096972.fastq.gz,688028929,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/002/SRR2096972/SRR2096972.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/002/SRR2096972/SRR2096972.fastq.gz,12088b8558119373d40041848ab151f1,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819225_r1,<NA>,GSM1819225,<NA>,DDX3 R534H ribosome profiling rep2,<NA>,<NA>,<NA>,<NA>,SRS987641,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/002/SRR2096972,638845550,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/002/SRR2096972,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/002/SRR2096972,a3043aa98cbdd34fef1dc6325993ed54,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092021,Illumina HiSeq 2500 sequencing; GSM1819226: Rluc control ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819226: Rluc control ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855835,Rluc control ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096973,20927350,1046367500,SAMN03855835,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819226,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/003/SRR2096973/SRR2096973.fastq.gz,680725526,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/003/SRR2096973/SRR2096973.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/003/SRR2096973/SRR2096973.fastq.gz,61c3c6a4c3e2b581ed6f466f2ca7c6c4,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819226_r1,<NA>,GSM1819226,<NA>,Rluc control ribosome profiling with sodium arsenite rep2,<NA>,<NA>,<NA>,<NA>,SRS987640,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/003/SRR2096973,654813051,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/003/SRR2096973,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/003/SRR2096973,7295886b9add90320ee4b8c6e1bf106f,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092022,Illumina HiSeq 2500 sequencing; GSM1819227: DDX3 WT ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819227: DDX3 WT ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855836,DDX3 WT ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096974,27176847,1358842350,SAMN03855836,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819227,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/004/SRR2096974/SRR2096974.fastq.gz,825361688,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/004/SRR2096974/SRR2096974.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/004/SRR2096974/SRR2096974.fastq.gz,97f77df38e53f54b6e338eb49aebf0dd,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-13,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819227_r1,<NA>,GSM1819227,<NA>,DDX3 WT ribosome profiling with sodium arsenite rep2,<NA>,<NA>,<NA>,<NA>,SRS987639,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/004/SRR2096974,814612332,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/004/SRR2096974,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/004/SRR2096974,27dbc2dfbff2251754f0e1cd28209d55,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA289569,SRX1092023,Illumina HiSeq 2500 sequencing; GSM1819228: DDX3 R534H ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,Illumina HiSeq 2500 sequencing; GSM1819228: DDX3 R534H ribosome profiling with sodium arsenite rep2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN03855837,DDX3 R534H ribosome profiling with sodium arsenite rep2,Illumina HiSeq 2500,SRR2096975,28797113,1439855650,SAMN03855837,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293-Flp-In-T-Rex,Embryonic kidney,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1819228,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR209/005/SRR2096975/SRR2096975.fastq.gz,893771333,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/005/SRR2096975/SRR2096975.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR209/005/SRR2096975/SRR2096975.fastq.gz,31b2814b599e2bf021d2b9b76eb38a3d,2016-04-24,2016-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1819228_r1,<NA>,GSM1819228,<NA>,DDX3 R534H ribosome profiling with sodium arsenite rep2,<NA>,<NA>,<NA>,<NA>,SRS987638,SRP060676,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR209/005/SRR2096975,872550236,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/005/SRR2096975,ftp.sra.ebi.ac.uk/vol1/srr/SRR209/005/SRR2096975,2f8fff225db70727ab7083639ef8d4e7,<NA>,GSE70802,Profiles of ribosome-associated mRNAs regulated by expression of wild-type (WT) or R534H variant of DDX3 with or without Sodium Arsenite treatment [Ribo-Seq],<NA>,<NA>,SRA276791,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA296059,SRX1254413,Illumina HiSeq 2000 sequencing; GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq,Illumina HiSeq 2000 sequencing; GSM1887643: ribosome profiling; Homo sapiens; miRNA-Seq,9606,Homo sapiens,miRNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN04093818,ribosome profiling,Illumina HiSeq 2000,SRR2433794,31967082,916773615,SAMN04093818,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1887643,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR243/004/SRR2433794/SRR2433794.fastq.gz,869325804,ftp.sra.ebi.ac.uk/vol1/fastq/SRR243/004/SRR2433794/SRR2433794.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR243/004/SRR2433794/SRR2433794.fastq.gz,4f5e99acef8fcd524dad62fcd8c57730,2015-11-13,2015-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-13,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1887643_r1,<NA>,GSM1887643,<NA>,ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS1072728,SRP063852,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR243/004/SRR2433794,626383378,ftp.sra.ebi.ac.uk/vol1/srr/SRR243/004/SRR2433794,ftp.sra.ebi.ac.uk/vol1/srr/SRR243/004/SRR2433794,bb204551ed638628626fcc3dac3b53af,<NA>,GSE73136,A spectral analysis approach to detects actively translated open reading frames in high resolution ribosome profiling data,<NA>,<NA>,SRA299240,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA299254,SRX1356474,NextSeq 500 sequencing; Ribosome profiling of lactimidomycin treated Jurkat cells,NextSeq 500 sequencing; Ribosome profiling of lactimidomycin treated Jurkat cells,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMN04195657,Lactimidomycin treated Jurkat cells,NextSeq 500,SRR2732970,378053973,28732101948,SAMN04195657,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Jurkat T-lymphocytes,T Cell/ T Lymphocyte,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribosome profiling in Jurkat cells,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR273/000/SRR2732970/SRR2732970.fastq.gz,10959838091,ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR2732970/SRR2732970.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR2732970/SRR2732970.fastq.gz,66c56b00eacdb1ad1b994679b65a686c,2015-12-10,2015-12-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,cell line,<NA>,2016-06-28,<NA>,SINGLE,ribosome profiling custom library,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,LTM Jurkat NextSeq500,<NA>,Lactimidomycin treated Jurkat cells,<NA>,Lactimidomycin treated Jurkat cells,<NA>,<NA>,<NA>,<NA>,SRS1122385,SRP065022,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR273/000/SRR2732970,10965987834,ftp.sra.ebi.ac.uk/vol1/srr/SRR273/000/SRR2732970,ftp.sra.ebi.ac.uk/vol1/srr/SRR273/000/SRR2732970,d30259c0b3d5f6bb409c6b628183bf25,<NA>,PRJNA299254,Positional proteomics reveals differences in N-terminal proteoform stability,<NA>,<NA>,SRA306243,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,peripheral blood,<NA>\nPRJNA299254,SRX1356478,NextSeq 500 sequencing; Ribosome profiling of cycloheximide treated Jurkat cells,NextSeq 500 sequencing; Ribosome profiling of cycloheximide treated Jurkat cells,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,other,SAMN04195655,Cycloheximide treated Jurkat cells,NextSeq 500,SRR2733100,388812515,29549751140,SAMN04195655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Jurkat T-lymphocytes,T Cell/ T Lymphocyte,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,CHX Jurkat,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR273/000/SRR2733100/SRR2733100.fastq.gz,11787812562,ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR2733100/SRR2733100.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR273/000/SRR2733100/SRR2733100.fastq.gz,7649e572e48a692dea76b650763844dc,2015-10-23,2015-10-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,cell line,<NA>,2016-06-28,<NA>,SINGLE,ribosome profiling custom library,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CHX Jurkat NextSeq500,<NA>,Cycloheximide treated Jurkat cells,<NA>,Cycloheximide treated Jurkat cells,<NA>,<NA>,<NA>,<NA>,SRS1122388,SRP065022,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR273/000/SRR2733100,11507004422,ftp.sra.ebi.ac.uk/vol1/srr/SRR273/000/SRR2733100,ftp.sra.ebi.ac.uk/vol1/srr/SRR273/000/SRR2733100,8625f9f61508504df8a5d5137f7c81c5,<NA>,PRJNA299254,Positional proteomics reveals differences in N-terminal proteoform stability,<NA>,<NA>,SRA306243,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,peripheral blood,<NA>\nPRJNA311041,SRX1562724,Illumina HiSeq 2000 sequencing; GSM2055244: ribosome profiling 37°C in WT; Escherichia coli; OTHER,Illumina HiSeq 2000 sequencing; GSM2055244: ribosome profiling 37°C in WT; Escherichia coli; OTHER,511145,Escherichia coli str. K-12 substr. MG1655,OTHER,TRANSCRIPTOMIC,other,SAMN04457972,ribosome profiling 37°C in WT,Illumina HiSeq 2000,SRR3147100,61258516,3124184316,SAMN04457972,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2055244,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR314/000/SRR3147100/SRR3147100.fastq.gz,2470648117,ftp.sra.ebi.ac.uk/vol1/fastq/SRR314/000/SRR3147100/SRR3147100.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR314/000/SRR3147100/SRR3147100.fastq.gz,90ebaa8793caecec466d7122d3582948,2017-02-01,2017-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-03-02,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2055244_r1,<NA>,GSM2055244,<NA>,ribosome profiling 37°C in WT,<NA>,<NA>,<NA>,<NA>,SRS1277332,SRP069339,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR314/000/SRR3147100,2064958495,ftp.sra.ebi.ac.uk/vol1/srr/SRR314/000/SRR3147100,ftp.sra.ebi.ac.uk/vol1/srr/SRR314/000/SRR3147100,a07c1aca417686b224c1932d84849843,K-12,GSE77617,Operon mRNAs are organized into ORF-centric structures that predict translation efficiency,<NA>,MG1655,SRA348058,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA314248,SRX1616307,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04531072,Ribosome profiling of HEK293 cells,Illumina HiSeq 2000,SRR3208296,44716778,1265915396,SAMN04531072,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo-Seq HEK293,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR320/006/SRR3208296/SRR3208296.fastq.gz,1107096184,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/006/SRR3208296/SRR3208296.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/006/SRR3208296/SRR3208296.fastq.gz,ca5e7e2b8f9e1220e97dd7885275d362,2016-03-10,2016-03-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribo-seq hek293,<NA>,Ribosome profiling of HEK293 cells,<NA>,Ribosome profiling of HEK293 cells,<NA>,<NA>,<NA>,<NA>,SRS1325807,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR320/006/SRR3208296,954068723,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/006/SRR3208296,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/006/SRR3208296,e9f39be720c5a0284c36f705f3686bbb,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic Kidney,<NA>\nPRJNA314248,SRX1616308,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531073,Ribosome profiling of MEF cells,Illumina HiSeq 2000,SRR3208406,23534216,729844417,SAMN04531073,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo-Seq MEF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR320/006/SRR3208406/SRR3208406.fastq.gz,635923964,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/006/SRR3208406/SRR3208406.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/006/SRR3208406/SRR3208406.fastq.gz,7bebc141ab2e02d5645a522f3ca0b4a8,2016-03-10,2016-03-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-06-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribo-seq mef,<NA>,Ribosome profiling of MEF cells,<NA>,Ribosome profiling of MEF cells,<NA>,<NA>,<NA>,<NA>,SRS1325808,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR320/006/SRR3208406,523896624,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/006/SRR3208406,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/006/SRR3208406,31da60f1c9cdeafe354e0fa8e470f287,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic fibroblast,<NA>\nPRJNA314248,SRX1616309,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with WT 18S rRNA,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with WT 18S rRNA,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531074,Ribosome profiling of MEF cells transfected with WT 18S rRNA,Illumina HiSeq 2000,SRR3208450,27696228,850735689,SAMN04531074,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo-Seq MEF ( WT 18S rRNA),<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR320/000/SRR3208450/SRR3208450.fastq.gz,566853147,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/000/SRR3208450/SRR3208450.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/000/SRR3208450/SRR3208450.fastq.gz,6e855fd0a895ae5665d36fd15dca4975,2016-03-10,2016-03-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribo-seq mef (WT 18S rRNA),<NA>,Ribosome profiling of MEF cells transfected with WT 18S rRNA,<NA>,Ribosome profiling of MEF cells transfected with WT 18S rRNA,<NA>,<NA>,<NA>,<NA>,SRS1325809,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR320/000/SRR3208450,414954531,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/000/SRR3208450,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/000/SRR3208450,c43eb5fa7da31463a783f39295ab6130,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic fibroblast,<NA>\nPRJNA314248,SRX1616310,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with mutant 18S rRNA,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells transfected with mutant 18S rRNA,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531075,Ribosome profiling of MEF cells transfected with mutant 18S rRNA,Illumina HiSeq 2000,SRR3208452,59116544,1698553234,SAMN04531075,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo-Seq MEF (mutant 18S rRNA),<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR320/002/SRR3208452/SRR3208452.fastq.gz,1167128565,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/002/SRR3208452/SRR3208452.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR320/002/SRR3208452/SRR3208452.fastq.gz,37e816b114ab8f51492d5fb0b89ba869,2016-03-10,2016-03-10,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ribo-seq mef (mutant 18S rRNA),<NA>,Ribosome profiling of MEF cells transfected with mutant 18S rRNA,<NA>,Ribosome profiling of MEF cells transfected with mutant 18S rRNA,<NA>,<NA>,<NA>,<NA>,SRS1325810,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR320/002/SRR3208452,857487790,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/002/SRR3208452,ftp.sra.ebi.ac.uk/vol1/srr/SRR320/002/SRR3208452,e310d83fd6625e3518580a907b4b8eb1,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic fibroblast,<NA>\nPRJNA316125,SRX1657158,Illumina HiSeq 2500 sequencing; GSM2097522: HBE cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097522: HBE cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576208,HBE cells ribosome profiling,Illumina HiSeq 2500,SRR3286543,110777954,5538897700,SAMN04576208,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HBE,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2097522,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR328/003/SRR3286543/SRR3286543.fastq.gz,3613125374,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/003/SRR3286543/SRR3286543.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/003/SRR3286543/SRR3286543.fastq.gz,df75c4410d3c6474aac1c9c498d39330,2019-07-23,2019-07-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-07-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2097522_r1,<NA>,GSM2097522,<NA>,HBE cells ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS1357385,SRP072231,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR328/003/SRR3286543,3346406392,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/003/SRR3286543,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/003/SRR3286543,8bec45b6c695b0d03830529cb16cb9b6,<NA>,GSE79539,Finding new proteins encoded by long non-coding RNAs in human cells,<NA>,<NA>,SRA393427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316125,SRX1657159,Illumina HiSeq 2500 sequencing; GSM2097523: A549 cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097523: A549 cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576209,A549 cells ribosome profiling,Illumina HiSeq 2500,SRR3286544,95891656,4794582800,SAMN04576209,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A549,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2097523,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR328/004/SRR3286544/SRR3286544.fastq.gz,3280435402,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/004/SRR3286544/SRR3286544.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/004/SRR3286544/SRR3286544.fastq.gz,8b31ac7f567b2cedb14508bc4006dff8,2019-07-23,2019-07-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-07-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2097523_r1,<NA>,GSM2097523,<NA>,A549 cells ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS1357383,SRP072231,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR328/004/SRR3286544,2987916667,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/004/SRR3286544,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/004/SRR3286544,bd450dd485282cb1c356ae5de7060589,<NA>,GSE79539,Finding new proteins encoded by long non-coding RNAs in human cells,<NA>,<NA>,SRA393427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316125,SRX1657160,Illumina HiSeq 2500 sequencing; GSM2097524: H1299 cells ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM2097524: H1299 cells ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN04576210,H1299 cells ribosome profiling,Illumina HiSeq 2500,SRR3286545,111526324,5576316200,SAMN04576210,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,H1299,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2097524,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR328/005/SRR3286545/SRR3286545.fastq.gz,3267830318,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/005/SRR3286545/SRR3286545.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR328/005/SRR3286545/SRR3286545.fastq.gz,398fd183eba7a9b039d564c9930b95a1,2019-07-23,2019-07-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-07-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2097524_r1,<NA>,GSM2097524,<NA>,H1299 cells ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS1357379,SRP072231,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR328/005/SRR3286545,3099215119,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/005/SRR3286545,ftp.sra.ebi.ac.uk/vol1/srr/SRR328/005/SRR3286545,71b1b8409c9b9dadde22aa4d45baf284,<NA>,GSE79539,Finding new proteins encoded by long non-coding RNAs in human cells,<NA>,<NA>,SRA393427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667364,Illumina HiSeq 2000 sequencing; GSM2100596: S phase ribosome profiling replicate 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100596: S phase ribosome profiling replicate 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588783,S phase ribosome profiling replicate 1,Illumina HiSeq 2000,SRR3306583,178511892,9104106492,SAMN04588783,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100596,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/003/SRR3306583/SRR3306583.fastq.gz,6658423020,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/003/SRR3306583/SRR3306583.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/003/SRR3306583/SRR3306583.fastq.gz,43d465538cd854ff4be408711ccb39bf,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100596_r1,<NA>,GSM2100596,<NA>,S phase ribosome profiling replicate 1,<NA>,<NA>,<NA>,<NA>,SRS1365643,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/003/SRR3306583,6091018616,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/003/SRR3306583,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/003/SRR3306583,657c6cfd0e55d70e3089983d04dc8978,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667365,Illumina HiSeq 2000 sequencing; GSM2100597: S phase ribosome profiling replicate 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100597: S phase ribosome profiling replicate 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588784,S phase ribosome profiling replicate 2,Illumina HiSeq 2000,SRR3306584,242256008,12355056408,SAMN04588784,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100597,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/004/SRR3306584/SRR3306584.fastq.gz,9245105463,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/004/SRR3306584/SRR3306584.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/004/SRR3306584/SRR3306584.fastq.gz,5ae3f27c02817ade66eb283522903795,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100597_r1,<NA>,GSM2100597,<NA>,S phase ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS1365641,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/004/SRR3306584,8454696428,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/004/SRR3306584,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/004/SRR3306584,13d5d1976ef4e36dac8b04bb8f28114a,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667366,Illumina HiSeq 2000 sequencing; GSM2100598: M phase ribosome profiling replicate 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100598: M phase ribosome profiling replicate 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588785,M phase ribosome profiling replicate 1,Illumina HiSeq 2000,SRR3306585,116546351,5943863901,SAMN04588785,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100598,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/005/SRR3306585/SRR3306585.fastq.gz,4490528777,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/005/SRR3306585/SRR3306585.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/005/SRR3306585/SRR3306585.fastq.gz,aee9c8da46007b5f54af7879f6205531,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100598_r1,<NA>,GSM2100598,<NA>,M phase ribosome profiling replicate 1,<NA>,<NA>,<NA>,<NA>,SRS1365640,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/005/SRR3306585,4197488811,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/005/SRR3306585,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/005/SRR3306585,0fb11ec98633a66e5aa02ee16d1226c3,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667367,Illumina HiSeq 2000 sequencing; GSM2100599: M phase ribosome profiling replicate 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100599: M phase ribosome profiling replicate 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588786,M phase ribosome profiling replicate 2,Illumina HiSeq 2000,SRR3306586,239897608,12234778008,SAMN04588786,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100599,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/006/SRR3306586/SRR3306586.fastq.gz,9075045155,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/006/SRR3306586/SRR3306586.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/006/SRR3306586/SRR3306586.fastq.gz,a17e719e2aa0e16071b70c9429927d55,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100599_r1,<NA>,GSM2100599,<NA>,M phase ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS1365639,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/006/SRR3306586,8313680808,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/006/SRR3306586,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/006/SRR3306586,277e9191d3b7f82ec5a5cf519a42fc85,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667368,Illumina HiSeq 2000 sequencing; GSM2100600: M phase ribosome profiling synchronized by shake off; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100600: M phase ribosome profiling synchronized by shake off; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588787,M phase ribosome profiling synchronized by shake off,Illumina HiSeq 2000,SRR3306587,242516177,12368325027,SAMN04588787,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100600,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/007/SRR3306587/SRR3306587.fastq.gz,9192269363,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/007/SRR3306587/SRR3306587.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/007/SRR3306587/SRR3306587.fastq.gz,49b6555b188093d6982291b8aed5ee62,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100600_r1,<NA>,GSM2100600,<NA>,M phase ribosome profiling synchronized by shake off,<NA>,<NA>,<NA>,<NA>,SRS1365638,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/007/SRR3306587,8357930174,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/007/SRR3306587,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/007/SRR3306587,80aa0b5208899b479cd7e5ce9b3f94f5,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667369,Illumina HiSeq 2000 sequencing; GSM2100601: Asynchronous cell ribosome profiling 1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100601: Asynchronous cell ribosome profiling 1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588788,Asynchronous cell ribosome profiling 1,Illumina HiSeq 2000,SRR3306588,173946221,8871257271,SAMN04588788,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100601,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/008/SRR3306588/SRR3306588.fastq.gz,6546434160,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/008/SRR3306588/SRR3306588.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/008/SRR3306588/SRR3306588.fastq.gz,611b7080ea0d460c7001490bf5039b63,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-02-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100601_r1,<NA>,GSM2100601,<NA>,Asynchronous cell ribosome profiling 1,<NA>,<NA>,<NA>,<NA>,SRS1365637,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/008/SRR3306588,6006895001,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/008/SRR3306588,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/008/SRR3306588,3302436a491729429a2213bad89d3ef9,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA316618,SRX1667370,Illumina HiSeq 2000 sequencing; GSM2100602: Asynchronous cell ribosome profiling 2; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM2100602: Asynchronous cell ribosome profiling 2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04588789,Asynchronous cell ribosome profiling 2,Illumina HiSeq 2000,SRR3306589,242417925,12363314175,SAMN04588789,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human cervical cancer cell line,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2100602,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR330/009/SRR3306589/SRR3306589.fastq.gz,9071737902,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/009/SRR3306589/SRR3306589.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR330/009/SRR3306589/SRR3306589.fastq.gz,247363b0d5e1d60dc494293216f71339,2016-04-09,2016-04-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2100602_r1,<NA>,GSM2100602,<NA>,Asynchronous cell ribosome profiling 2,<NA>,<NA>,<NA>,<NA>,SRS1365642,SRP072459,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR330/009/SRR3306589,8267908947,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/009/SRR3306589,ftp.sra.ebi.ac.uk/vol1/srr/SRR330/009/SRR3306589,f5596b1ca9949370f077b3c4e6e67ab6,<NA>,GSE79664,Regulation of poly(A) tail and translation during the somatic cell cycle,<NA>,<NA>,SRA399402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA314248,SRX1616308,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN04531073,Ribosome profiling of MEF cells,Illumina HiSeq 2000,SRR3392126,60694250,1876859442,SAMN04531073,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo-Seq MEF,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR339/006/SRR3392126/SRR3392126.fastq.gz,1664936467,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/006/SRR3392126/SRR3392126.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/006/SRR3392126/SRR3392126.fastq.gz,fcbec27defb2cc983e5ec858b8ddfa87,2016-04-16,2016-04-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo-Seq MEF,<NA>,Ribosome profiling of MEF cells,<NA>,Ribosome profiling of MEF cells,<NA>,<NA>,<NA>,<NA>,SRS1325808,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR339/006/SRR3392126,1370845324,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/006/SRR3392126,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/006/SRR3392126,c92b058a98a42bb3b951a41d533a464c,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic fibroblast,<NA>\nPRJNA314248,SRX1704872,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Control for Methionine Starvation),Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Control for Methionine Starvation),9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN04625643,HEK293T cells for Ribosome profiling (Control for Methionine Starvation),Illumina HiSeq 2000,SRR3392899,38333571,1136913910,SAMN04625643,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293T,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293T cells for Ribosome profiling (Control for Methionine Starvation),<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR339/009/SRR3392899/SRR3392899.fastq.gz,594743345,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/009/SRR3392899/SRR3392899.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/009/SRR3392899/SRR3392899.fastq.gz,7d31445d0fcf27b1ca68a79bd9b9880d,2016-04-16,2016-04-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"Ribo-Seq (HEK293T, Control for Methionine Starvation)\",<NA>,\"Ribosome Profiling (HEK293T, Control for Methionine Starvation)\",<NA>,HEK293T cells for Ribosome profiling (Control for Methionine Starvation),<NA>,<NA>,<NA>,<NA>,SRS1396984,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR339/009/SRR3392899,528552270,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/009/SRR3392899,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/009/SRR3392899,b65da232a42d7f0ba86419c2ae8d1d14,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic Kidney,<NA>\nPRJNA314248,SRX1704873,Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Methionine Starvation),Illumina HiSeq 2000 sequencing; HEK293T cells for Ribosome profiling (Methionine Starvation),9606,Homo sapiens,OTHER,OTHER,other,SAMN04625644,HEK293T cells for Ribosome profiling (Methionine Starvation),Illumina HiSeq 2000,SRR3398188,38629161,1141710659,SAMN04625644,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293T,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293T cells for Ribosome profiling (Methionine Starvation),<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR339/008/SRR3398188/SRR3398188.fastq.gz,556154974,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/008/SRR3398188/SRR3398188.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR339/008/SRR3398188/SRR3398188.fastq.gz,d2430de241318c1dfc4eac0cee05d026,2016-04-18,2016-04-18,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-27,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,\"Ribo-Seq (HEK293T, Methionine Starvation)\",<NA>,\"Ribosome Profiling (HEK293T, Methionine Starvation)\",<NA>,HEK293T cells for Ribosome profiling (Methionine Starvation),<NA>,<NA>,<NA>,<NA>,SRS1396985,SRP071216,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR339/008/SRR3398188,539380134,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/008/SRR3398188,ftp.sra.ebi.ac.uk/vol1/srr/SRR339/008/SRR3398188,d85b200bc37a72b87d9d949abcefdc8e,<NA>,PRJNA314248,Mammalian cell lines Raw sequence reads,<NA>,<NA>,SRA378655,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Embryonic Kidney,<NA>\nPRJNA344393,SRX2189156,NextSeq 500 sequencing; GSM2327825: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327825: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821926,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin,NextSeq 500,SRR4293693,178964457,13601298732,SAMN05821926,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HCT116,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2327825,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR429/003/SRR4293693/SRR4293693.fastq.gz,6689403557,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/003/SRR4293693/SRR4293693.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/003/SRR4293693/SRR4293693.fastq.gz,e04772698c040c4dfc8eafa607586f24,2017-01-27,2017-01-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-22,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2327825_r1,<NA>,GSM2327825,<NA>,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with lactimidomycin,<NA>,<NA>,<NA>,<NA>,SRS1711882,SRP090415,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR429/003/SRR4293693,6347200895,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/003/SRR4293693,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/003/SRR4293693,747df8503266807120955c979ba72bf8,<NA>,GSE87328,eIF1 modulates the recognition of sub-optimal translation start sites and steers gene expression control mediated by uORFs,<NA>,<NA>,SRA478929,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,colon,<NA>\nPRJNA344393,SRX2189157,NextSeq 500 sequencing; GSM2327826: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327826: Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821925,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide,NextSeq 500,SRR4293694,184823119,14046557044,SAMN05821925,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HCT116,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2327826,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR429/004/SRR4293694/SRR4293694.fastq.gz,6921131978,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/004/SRR4293694/SRR4293694.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/004/SRR4293694/SRR4293694.fastq.gz,40ebfee5952bd663ef4860875528807c,2017-01-27,2017-01-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2327826_r1,<NA>,GSM2327826,<NA>,Ribosome profiling of HCT116 cells upon eIF1 knockdown treated with cycloheximide,<NA>,<NA>,<NA>,<NA>,SRS1711878,SRP090415,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR429/004/SRR4293694,6518206349,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/004/SRR4293694,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/004/SRR4293694,b65731f8b6fdde506e88e01d55bc4598,<NA>,GSE87328,eIF1 modulates the recognition of sub-optimal translation start sites and steers gene expression control mediated by uORFs,<NA>,<NA>,SRA478929,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,colon,<NA>\nPRJNA344393,SRX2189158,NextSeq 500 sequencing; GSM2327827: Ribosome profiling of control HCT116 cells treated with lactimidomycin; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327827: Ribosome profiling of control HCT116 cells treated with lactimidomycin; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821924,Ribosome profiling of control HCT116 cells treated with lactimidomycin,NextSeq 500,SRR4293695,199563521,15166827596,SAMN05821924,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HCT116,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2327827,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR429/005/SRR4293695/SRR4293695.fastq.gz,6987463188,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/005/SRR4293695/SRR4293695.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/005/SRR4293695/SRR4293695.fastq.gz,9dc9174cada7d29d157de7454adf4c23,2017-01-27,2017-01-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-12,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2327827_r1,<NA>,GSM2327827,<NA>,Ribosome profiling of control HCT116 cells treated with lactimidomycin,<NA>,<NA>,<NA>,<NA>,SRS1711879,SRP090415,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR429/005/SRR4293695,6683372895,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/005/SRR4293695,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/005/SRR4293695,c1ab4ee26e2589bcb490ecf6ab761ecd,<NA>,GSE87328,eIF1 modulates the recognition of sub-optimal translation start sites and steers gene expression control mediated by uORFs,<NA>,<NA>,SRA478929,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,colon,<NA>\nPRJNA344393,SRX2189159,NextSeq 500 sequencing; GSM2327828: Ribosome profiling of control HCT116 cells treated with cycloheximide; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2327828: Ribosome profiling of control HCT116 cells treated with cycloheximide; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN05821923,Ribosome profiling of control HCT116 cells treated with cycloheximide,NextSeq 500,SRR4293696,225042166,17103204616,SAMN05821923,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HCT116,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2327828,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR429/006/SRR4293696/SRR4293696.fastq.gz,7888401921,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/006/SRR4293696/SRR4293696.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR429/006/SRR4293696/SRR4293696.fastq.gz,3d6257698d4b2894f32fb21f3accc22a,2017-01-27,2017-01-27,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-31,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2327828_r1,<NA>,GSM2327828,<NA>,Ribosome profiling of control HCT116 cells treated with cycloheximide,<NA>,<NA>,<NA>,<NA>,SRS1711881,SRP090415,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR429/006/SRR4293696,7529247487,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/006/SRR4293696,ftp.sra.ebi.ac.uk/vol1/srr/SRR429/006/SRR4293696,88e2b31eec881c7a888cf1696675a436,<NA>,GSE87328,eIF1 modulates the recognition of sub-optimal translation start sites and steers gene expression control mediated by uORFs,<NA>,<NA>,SRA478929,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,colon,<NA>\nPRJNA348553,SRX2246398,Illumina HiSeq 2000 sequencing; GSM2346474: Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin; Arabidopsis thaliana; OTHER,Illumina HiSeq 2000 sequencing; GSM2346474: Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin; Arabidopsis thaliana; OTHER,3702,Arabidopsis thaliana,OTHER,TRANSCRIPTOMIC,other,SAMN05912771,Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin,Illumina HiSeq 2000,SRR4424237,104721382,5340790482,SAMN05912771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Landsberg erecta,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2346474,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR442/007/SRR4424237/SRR4424237.fastq.gz,4044721427,ftp.sra.ebi.ac.uk/vol1/fastq/SRR442/007/SRR4424237/SRR4424237.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR442/007/SRR4424237/SRR4424237.fastq.gz,95953bffa1bc4c0df6c0a39b46510b7b,2016-11-26,2016-11-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-31,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2346474_r1,<NA>,GSM2346474,<NA>,Ribosome profiling of wild-type ecotype Landsberg erecta treated with lactimidomycin,<NA>,<NA>,<NA>,<NA>,SRS1746799,SRP091588,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR442/007/SRR4424237,3784179123,ftp.sra.ebi.ac.uk/vol1/srr/SRR442/007/SRR4424237,ftp.sra.ebi.ac.uk/vol1/srr/SRR442/007/SRR4424237,8f56afce8dcb961c2aaa2c353488e047,<NA>,GSE88790,N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana.,<NA>,<NA>,SRA485223,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stem explants,<NA>\nPRJNA348553,SRX2246399,Illumina HiSeq 2000 sequencing; GSM2346475: Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide; Arabidopsis thaliana; OTHER,Illumina HiSeq 2000 sequencing; GSM2346475: Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide; Arabidopsis thaliana; OTHER,3702,Arabidopsis thaliana,OTHER,TRANSCRIPTOMIC,other,SAMN05912770,Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide,Illumina HiSeq 2000,SRR4424238,99524632,5075756232,SAMN05912770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Landsberg erecta,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2346475,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR442/008/SRR4424238/SRR4424238.fastq.gz,3950948586,ftp.sra.ebi.ac.uk/vol1/fastq/SRR442/008/SRR4424238/SRR4424238.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR442/008/SRR4424238/SRR4424238.fastq.gz,5cf244b320b222133132bdf4273182f4,2016-11-26,2016-11-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2346475_r1,<NA>,GSM2346475,<NA>,Ribosome profiling of wild-type ecotype Landsberg erecta treated with cycloheximide,<NA>,<NA>,<NA>,<NA>,SRS1746800,SRP091588,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR442/008/SRR4424238,3635925450,ftp.sra.ebi.ac.uk/vol1/srr/SRR442/008/SRR4424238,ftp.sra.ebi.ac.uk/vol1/srr/SRR442/008/SRR4424238,db66ba3703781e06006d291f657805c2,<NA>,GSE88790,N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana.,<NA>,<NA>,SRA485223,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stem explants,<NA>\nPRJNA158351,SRX137370,Illumina Genome Analyzer II sequencing; GSM910953: A3-1 Ribosome profiling - siLuc; Mus musculus; OTHER,Illumina Genome Analyzer II sequencing; GSM910953: A3-1 Ribosome profiling - siLuc; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN00854339,A3-1 Ribosome profiling - siLuc,Illumina Genome Analyzer II,SRR458756,21824511,785682396,SAMN00854339,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A3-1,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM910953_1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR458/SRR458756/SRR458756.fastq.gz,657936010,ftp.sra.ebi.ac.uk/vol1/fastq/SRR458/SRR458756/SRR458756.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR458/SRR458756/SRR458756.fastq.gz,5ae1a8d53f71dc05665133da74e789c5,2013-11-11,2012-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-01,<NA>,SINGLE,GSM910953: A3-1 Ribosome profiling - siLuc,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM910953_r1,<NA>,GSM910953,<NA>,A3-1 Ribosome profiling - siLuc,<NA>,<NA>,<NA>,<NA>,SRS308446,SRP012118,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR458/SRR458756,433748001,ftp.sra.ebi.ac.uk/vol1/srr/SRR458/SRR458756,ftp.sra.ebi.ac.uk/vol1/srr/SRR458/SRR458756,404aa091d81c8241b1f9e6deb0648c11,<NA>,GSE37111,Transcriptome-wide identification of LIN28A targets in mouse embryonic stem cell (A3-1) [Illumina Seq],<NA>,<NA>,SRA051495,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA158351,SRX137371,Illumina Genome Analyzer II sequencing; GSM910954: A3-1 Ribosome profiling - siLin28a; Mus musculus; OTHER,Illumina Genome Analyzer II sequencing; GSM910954: A3-1 Ribosome profiling - siLin28a; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN00854340,A3-1 Ribosome profiling - siLin28a,Illumina Genome Analyzer II,SRR458757,18520372,666733392,SAMN00854340,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,A3-1,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM910954_1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR458/SRR458757/SRR458757.fastq.gz,532055772,ftp.sra.ebi.ac.uk/vol1/fastq/SRR458/SRR458757/SRR458757.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR458/SRR458757/SRR458757.fastq.gz,091513fb6818c6d4a47dab3d5aabf016,2013-11-11,2012-11-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-12,<NA>,SINGLE,GSM910954: A3-1 Ribosome profiling - siLin28a,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM910954_r1,<NA>,GSM910954,<NA>,A3-1 Ribosome profiling - siLin28a,<NA>,<NA>,<NA>,<NA>,SRS308447,SRP012118,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR458/SRR458757,353889077,ftp.sra.ebi.ac.uk/vol1/srr/SRR458/SRR458757,ftp.sra.ebi.ac.uk/vol1/srr/SRR458/SRR458757,63cf1f3f6e99170381aeafcb1dcda553,<NA>,GSE37111,Transcriptome-wide identification of LIN28A targets in mouse embryonic stem cell (A3-1) [Illumina Seq],<NA>,<NA>,SRA051495,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA353604,SRX2349147,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026356,335001052,16750052600,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_0h_post_dauer,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/006/SRR5026356/SRR5026356.fastq.gz,9282241962,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/006/SRR5026356/SRR5026356.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/006/SRR5026356/SRR5026356.fastq.gz,cef05f8f03cb3b6abed99fa8b8004702,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Dauer_0h,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,RiboSeq_0h_post_dauer,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/006/SRR5026356,8622021565,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/006/SRR5026356,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/006/SRR5026356,9631a8d7680378af7ccf7ca30085cca5,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA353604,SRX2352572,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026359,66094062,3304703100,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_0.5h_post_dauer,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/009/SRR5026359/SRR5026359.fastq.gz,1719469242,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/009/SRR5026359/SRR5026359.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/009/SRR5026359/SRR5026359.fastq.gz,ea565483ddd3b660c0ef457b3bc23d02,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Celegans_0.5h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0-5h.riboseq,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/009/SRR5026359,1613140446,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/009/SRR5026359,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/009/SRR5026359,4df663100fb2692b249c24411e845cd4,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA353604,SRX2352779,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026589,125934593,6296729650,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_1h_post_dauer,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/009/SRR5026589/SRR5026589.fastq.gz,3216191792,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/009/SRR5026589/SRR5026589.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/009/SRR5026589/SRR5026589.fastq.gz,024d1e8846923386c42eca9be065a5c7,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Celegans_1h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1h.riboseq,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/009/SRR5026589,3035331963,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/009/SRR5026589,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/009/SRR5026589,cf21be976e011645edc8e654328e6564,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA353604,SRX2352796,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026592,109643569,5482178450,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_2h_post_dauer,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/002/SRR5026592/SRR5026592.fastq.gz,2713159008,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/002/SRR5026592/SRR5026592.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/002/SRR5026592/SRR5026592.fastq.gz,ceda4f1cf69af9851ee5723960644748,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Celegans_2h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2h.riboseq,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/002/SRR5026592,2602263079,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/002/SRR5026592,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/002/SRR5026592,896bcf9a683156dd100a6fc513cef181,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA353604,SRX2352801,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026603,139378431,6968921550,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_3h_post_dauer,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/003/SRR5026603/SRR5026603.fastq.gz,3775584183,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/003/SRR5026603/SRR5026603.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/003/SRR5026603/SRR5026603.fastq.gz,917ef0c556bbed6eef1b296dadbe8aca,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Celegans_3h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,3h.riboseq,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/003/SRR5026603,3450861748,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/003/SRR5026603,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/003/SRR5026603,c0f444f972b31d7c457490fbc5de6408,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA353604,SRX2352818,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,Illumina HiSeq 2000 sequencing; Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SAMN06017629,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,Illumina HiSeq 2000,SRR5026637,138903638,6945181900,SAMN06017629,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,University Heidelberg,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Celegans_post_dauer_4h,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR502/007/SRR5026637/SRR5026637.fastq.gz,3633816582,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/007/SRR5026637/SRR5026637.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR502/007/SRR5026637/SRR5026637.fastq.gz,ed5524a653213b8567026431f8e39698,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,Celegans_post_dauer_4h,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,4h.riboseq,<NA>,DAUER_0h,<NA>,This sample has been submitted by pda|christoph.dieterich@med.uni-heidelberg.de on 2016-11-17; Caenorhabditis elegans,<NA>,<NA>,<NA>,<NA>,SRS1799345,SRP093364,<NA>,<NA>,<NA>,hermaphrodite,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR502/007/SRR5026637,3355136924,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/007/SRR5026637,ftp.sra.ebi.ac.uk/vol1/srr/SRR502/007/SRR5026637,d4602ae0b49b56af106297de299b24aa,N2,PRJNA353604,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,<NA>,<NA>,SRA494245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,hermaphrodite,<NA>,<NA>,<NA>,<NA>,<NA>,whole body,<NA>\nPRJNA356772,SRX2407647,NextSeq 500 sequencing; GSM2420418: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,NextSeq 500 sequencing; GSM2420418: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,216597,Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN06127036,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes,NextSeq 500,SRR5090708,191796596,14576541296,SAMN06127036,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2420418,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/008/SRR5090708/SRR5090708.fastq.gz,4373797310,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/008/SRR5090708/SRR5090708.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/008/SRR5090708/SRR5090708.fastq.gz,6439372c02c1c94fb47700b0b183e404,2017-01-31,2017-01-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2420418_r1,<NA>,GSM2420418,<NA>,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 monosomes,<NA>,<NA>,<NA>,<NA>,SRS1846090,SRP094797,<NA>,Typhimurium,Typhimurium,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/008/SRR5090708,4862549256,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/008/SRR5090708,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/008/SRR5090708,ebdb1842b38c73e6abeef9c5b476d59b,SL1344,GSE91066,REPARATION:  Ribosome Profiling Assisted (Re-) Annotation of Bacterial genomes,enterica,<NA>,SRA501710,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA356772,SRX2407648,NextSeq 500 sequencing; GSM2420419: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,NextSeq 500 sequencing; GSM2420419: Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; RNA-Seq,216597,Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN06127035,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes,NextSeq 500,SRR5090709,174834326,13287408776,SAMN06127035,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2420419,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/009/SRR5090709/SRR5090709.fastq.gz,4072225917,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/009/SRR5090709/SRR5090709.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/009/SRR5090709/SRR5090709.fastq.gz,40d8ff85d85403c64c1a047876f06075,2017-01-31,2017-01-31,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2420419_r1,<NA>,GSM2420419,<NA>,Ribosome profiling of wild type Salmonella enterica serovar Thyphimurium - strain SL1344 polysomes,<NA>,<NA>,<NA>,<NA>,SRS1846091,SRP094797,<NA>,Typhimurium,Typhimurium,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/009/SRR5090709,4476989901,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/009/SRR5090709,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/009/SRR5090709,13d3e9cd6842875ee86fa03f886f286a,SL1344,GSE91066,REPARATION:  Ribosome Profiling Assisted (Re-) Annotation of Bacterial genomes,enterica,<NA>,SRA501710,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416031,Illumina HiSeq 4000 sequencing; GSM2424851: Ribosome profiling-siControl-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424851: Ribosome profiling-siControl-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131999,Ribosome profiling-siControl-RPF,Illumina HiSeq 4000,SRR5099275,48648149,2432407450,SAMN06131999,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424851,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/005/SRR5099275/SRR5099275.fastq.gz,691016810,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/005/SRR5099275/SRR5099275.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/005/SRR5099275/SRR5099275.fastq.gz,cef449e7d84bfe0245354b1c73165f3e,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424851_r1,<NA>,GSM2424851,<NA>,Ribosome profiling-siControl-RPF,<NA>,<NA>,<NA>,<NA>,SRS1853614,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/005/SRR5099275,726298711,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/005/SRR5099275,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/005/SRR5099275,ee7d02ba82b19fff3276c028bc86b37d,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416032,Illumina HiSeq 4000 sequencing; GSM2424852: Ribosome profiling-siControl-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424852: Ribosome profiling-siControl-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131998,Ribosome profiling-siControl-input,Illumina HiSeq 4000,SRR5099276,46915311,2345765550,SAMN06131998,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424852,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/006/SRR5099276/SRR5099276.fastq.gz,1076970537,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/006/SRR5099276/SRR5099276.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/006/SRR5099276/SRR5099276.fastq.gz,0e7e9c7e14f80522aa2b88eea5a53094,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424852_r1,<NA>,GSM2424852,<NA>,Ribosome profiling-siControl-input,<NA>,<NA>,<NA>,<NA>,SRS1853615,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/006/SRR5099276,737085748,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/006/SRR5099276,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/006/SRR5099276,f4e58cddafd86c434a7d35d434dd5159,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416033,Illumina HiSeq 4000 sequencing; GSM2424853: Ribosome profiling-rep1-siYTHDF3-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424853: Ribosome profiling-rep1-siYTHDF3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131997,Ribosome profiling-rep1-siYTHDF3-RPF,Illumina HiSeq 4000,SRR5099277,41072030,2053601500,SAMN06131997,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424853,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/007/SRR5099277/SRR5099277.fastq.gz,578297143,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/007/SRR5099277/SRR5099277.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/007/SRR5099277/SRR5099277.fastq.gz,f257a3036528e6d879b78d8ed0cab9e9,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424853_r1,<NA>,GSM2424853,<NA>,Ribosome profiling-rep1-siYTHDF3-RPF,<NA>,<NA>,<NA>,<NA>,SRS1853616,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/007/SRR5099277,602738082,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/007/SRR5099277,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/007/SRR5099277,9a58bc1d58f3e400a45c597db08d1461,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416034,Illumina HiSeq 4000 sequencing; GSM2424854: Ribosome profiling-rep1-siYTHDF3-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424854: Ribosome profiling-rep1-siYTHDF3-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131996,Ribosome profiling-rep1-siYTHDF3-input,Illumina HiSeq 4000,SRR5099278,39819574,1990978700,SAMN06131996,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424854,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/008/SRR5099278/SRR5099278.fastq.gz,920484861,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/008/SRR5099278/SRR5099278.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/008/SRR5099278/SRR5099278.fastq.gz,32537202e57a3723fdbb6dc3c8b30d36,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-02,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424854_r1,<NA>,GSM2424854,<NA>,Ribosome profiling-rep1-siYTHDF3-input,<NA>,<NA>,<NA>,<NA>,SRS1853617,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/008/SRR5099278,625331414,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/008/SRR5099278,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/008/SRR5099278,574ab53ebfdbbe80af9f7b088aad3ec2,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416035,Illumina HiSeq 4000 sequencing; GSM2424855: Ribosome profiling-rep2-siYTHDF3-RPF; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424855: Ribosome profiling-rep2-siYTHDF3-RPF; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131995,Ribosome profiling-rep2-siYTHDF3-RPF,Illumina HiSeq 4000,SRR5099279,48158932,2407946600,SAMN06131995,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424855,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/009/SRR5099279/SRR5099279.fastq.gz,641494527,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/009/SRR5099279/SRR5099279.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/009/SRR5099279/SRR5099279.fastq.gz,1b20f2dc3308e8ed937caf1b3694c8bb,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-05,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424855_r1,<NA>,GSM2424855,<NA>,Ribosome profiling-rep2-siYTHDF3-RPF,<NA>,<NA>,<NA>,<NA>,SRS1853618,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/009/SRR5099279,669739668,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/009/SRR5099279,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/009/SRR5099279,2391be08d631d2dbd2e15fe7ee205a9c,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA340948,SRX2416036,Illumina HiSeq 4000 sequencing; GSM2424856: Ribosome profiling-rep2-siYTHDF3-input; Homo sapiens; OTHER,Illumina HiSeq 4000 sequencing; GSM2424856: Ribosome profiling-rep2-siYTHDF3-input; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06131994,Ribosome profiling-rep2-siYTHDF3-input,Illumina HiSeq 4000,SRR5099280,54048791,2702439550,SAMN06131994,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa cells,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2424856,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR509/000/SRR5099280/SRR5099280.fastq.gz,1266072525,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/000/SRR5099280/SRR5099280.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR509/000/SRR5099280/SRR5099280.fastq.gz,8a4233858bf0e092aa2e67f91ea0fd5c,2016-12-20,2016-12-20,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-04-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2424856_r1,<NA>,GSM2424856,<NA>,Ribosome profiling-rep2-siYTHDF3-input,<NA>,<NA>,<NA>,<NA>,SRS1853619,SRP083699,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR509/000/SRR5099280,852603598,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/000/SRR5099280,ftp.sra.ebi.ac.uk/vol1/srr/SRR509/000/SRR5099280,3efce33b26a5a62a909aefeed631c4ba,<NA>,GSE86214,YTHDF3 facilitates translation and decay of the N6-methyladenosine-modified RNA,<NA>,<NA>,SRA458091,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA311041,SRX2502104,Illumina HiSeq 4000 sequencing; GSM2462933: ribosome profiling 37°C in WT with control plasmid; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462933: ribosome profiling 37°C in WT with control plasmid; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240270,ribosome profiling 37°C in WT with control plasmid,Illumina HiSeq 4000,SRR5186136,61670104,3145175304,SAMN06240270,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2462933,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR518/006/SRR5186136/SRR5186136.fastq.gz,1264913782,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/006/SRR5186136/SRR5186136.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/006/SRR5186136/SRR5186136.fastq.gz,86ebd1a7010e4acaf27b561468420367,2017-02-01,2017-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2462933_r1,<NA>,GSM2462933,<NA>,ribosome profiling 37°C in WT with control plasmid,<NA>,<NA>,<NA>,<NA>,SRS1928104,SRP069339,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR518/006/SRR5186136,1117966721,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/006/SRR5186136,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/006/SRR5186136,5a3f75644b1b289d432db7ee721e9373,MG1655 [p-CTRL],GSE77617,Operon mRNAs are organized into ORF-centric structures that predict translation efficiency,<NA>,<NA>,SRA348058,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA311041,SRX2502105,Illumina HiSeq 4000 sequencing; GSM2462934: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462934: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240269,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA,Illumina HiSeq 4000,SRR5186137,68702208,3503812608,SAMN06240269,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2462934,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR518/007/SRR5186137/SRR5186137.fastq.gz,1395250463,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/007/SRR5186137/SRR5186137.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/007/SRR5186137/SRR5186137.fastq.gz,99f0c35cfb9d6c43c45240427755c65c,2017-02-01,2017-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2462934_r1,<NA>,GSM2462934,<NA>,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUA,<NA>,<NA>,<NA>,<NA>,SRS1928105,SRP069339,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR518/007/SRR5186137,1238165622,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/007/SRR5186137,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/007/SRR5186137,1aa337ff6fd05756222efc2086ed239f,MG1655 [p-CUA],GSE77617,Operon mRNAs are organized into ORF-centric structures that predict translation efficiency,<NA>,<NA>,SRA348058,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA311041,SRX2502106,Illumina HiSeq 4000 sequencing; GSM2462935: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG; Escherichia coli; OTHER,Illumina HiSeq 4000 sequencing; GSM2462935: ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG; Escherichia coli; OTHER,562,Escherichia coli,OTHER,TRANSCRIPTOMIC,other,SAMN06240268,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG,Illumina HiSeq 4000,SRR5186138,43070262,2196583362,SAMN06240268,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2462935,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR518/008/SRR5186138/SRR5186138.fastq.gz,869679697,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/008/SRR5186138/SRR5186138.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR518/008/SRR5186138/SRR5186138.fastq.gz,9f87d0512db331f3ccfaf9f0283f18a9,2017-02-01,2017-02-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2462935_r1,<NA>,GSM2462935,<NA>,ribosome profiling 37°C in WT with plasmid expressing mini-ORF CUG,<NA>,<NA>,<NA>,<NA>,SRS1928106,SRP069339,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR518/008/SRR5186138,776004220,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/008/SRR5186138,ftp.sra.ebi.ac.uk/vol1/srr/SRR518/008/SRR5186138,269cc5e1aa7cd3bb4898afbcc8e4f009,MG1655 [p-CUG],GSE77617,Operon mRNAs are organized into ORF-centric structures that predict translation efficiency,<NA>,<NA>,SRA348058,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA369552,SRX2532339,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with harringtonine,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with harringtonine,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06289120,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,Illumina HiSeq 2500,SRR5223162,31545576,1608824376,SAMN06289120,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293,<NA>,SUB2365925,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293 Harr,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR522/002/SRR5223162/SRR5223162.fastq.gz,866304613,ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002/SRR5223162/SRR5223162.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/002/SRR5223162/SRR5223162.fastq.gz,aad54a5d92c8bf29206575d263ec1300,2018-09-02,2018-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-09-02,<NA>,SINGLE,HEK293 Harr,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,3_S3_L001_R1_001.fastq.gz,<NA>,HEK293,<NA>,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,<NA>,<NA>,<NA>,<NA>,SRS1953099,SRP098707,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR522/002/SRR5223162,736462742,ftp.sra.ebi.ac.uk/vol1/srr/SRR522/002/SRR5223162,ftp.sra.ebi.ac.uk/vol1/srr/SRR522/002/SRR5223162,df474810fc5d9e9c87850fa9cc043530,<NA>,PRJNA369552,HEK293 riboseq,<NA>,<NA>,SRA535048,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,kidney,<NA>\nPRJNA369552,SRX2532340,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with cycloheximide,Illumina HiSeq 2500 sequencing; Ribosome profiling of HEK293 cells with cycloheximide,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06289120,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,Illumina HiSeq 2500,SRR5223163,28042962,1430191062,SAMN06289120,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293,<NA>,SUB2365925,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293 CHX,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR522/003/SRR5223163/SRR5223163.fastq.gz,821546687,ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003/SRR5223163/SRR5223163.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR522/003/SRR5223163/SRR5223163.fastq.gz,0d434ef2b7b42d6eb15cb7f9e7cf6ae6,2018-09-02,2018-09-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-09-02,<NA>,SINGLE,HEK293 CHX,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2_S2_L001_R1_001.fastq.gz,<NA>,HEK293,<NA>,This sample has been submitted by pda|zhpn1024 on 2018-03-02; Homo sapiens,<NA>,<NA>,<NA>,<NA>,SRS1953099,SRP098707,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR522/003/SRR5223163,655407031,ftp.sra.ebi.ac.uk/vol1/srr/SRR522/003/SRR5223163,ftp.sra.ebi.ac.uk/vol1/srr/SRR522/003/SRR5223163,99a04f47a89ebc44b58451de6c9b3ba0,<NA>,PRJNA369552,HEK293 riboseq,<NA>,<NA>,SRA535048,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,kidney,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239050,8854232,451565832,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/000/SRR5239050/SRR5239050.fastq.gz,210050153,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239050/SRR5239050.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239050/SRR5239050.fastq.gz,903beb2df1cc5c9175b4651c51524e61,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r1,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/000/SRR5239050,176359186,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239050,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239050,a488e7047c96077e0e3a944e2086650b,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239051,8867186,452226486,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/001/SRR5239051/SRR5239051.fastq.gz,210840279,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239051/SRR5239051.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239051/SRR5239051.fastq.gz,48953fb497348295eb33e84851cbfb99,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r2,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/001/SRR5239051,176719914,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239051,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239051,87b47f939d10424bd58524e3d6cc4e6e,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239052,7927705,404312955,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/002/SRR5239052/SRR5239052.fastq.gz,181088459,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239052/SRR5239052.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239052/SRR5239052.fastq.gz,8f15dcab434fa31fc755999f4344ae90,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r3,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/002/SRR5239052,153591387,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239052,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239052,508dc29561f6625616e78e9e4fe6a001,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239053,7894562,402622662,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/003/SRR5239053/SRR5239053.fastq.gz,180720571,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239053/SRR5239053.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239053/SRR5239053.fastq.gz,92c27c9ddee6cc38504dbe52098ba7f4,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r4,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/003/SRR5239053,153046996,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239053,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239053,585e437148c468f779ee93ad9a5da1a6,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239054,9216208,470026608,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/004/SRR5239054/SRR5239054.fastq.gz,220860046,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239054/SRR5239054.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239054/SRR5239054.fastq.gz,31df8798898d9bc7bb5b371edc8b00f8,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r5,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/004/SRR5239054,185537590,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239054,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239054,295937d822c66ad34c10fe25820ae55d,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545979,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481052: Ribosome Profiling Ctrl Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312775,Ribosome Profiling Ctrl Day 5,Illumina HiSeq 1500,SRR5239055,9218352,470135952,SAMN06312775,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/005/SRR5239055/SRR5239055.fastq.gz,222019171,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239055/SRR5239055.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239055/SRR5239055.fastq.gz,9f46ebf1980a108a25fcb7790809a290,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481052_r6,<NA>,GSM2481052,<NA>,Ribosome Profiling Ctrl Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964858,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/005/SRR5239055,186227720,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239055,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239055,d9d1776df92ebd10a47f2d546f2592e3,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239056,15501047,790553397,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/006/SRR5239056/SRR5239056.fastq.gz,367834304,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239056/SRR5239056.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239056/SRR5239056.fastq.gz,02f8fbd0628179b12181fdbecb331c7f,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r1,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/006/SRR5239056,310567111,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239056,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239056,7d8591380666a37abede27e2b28105f5,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239057,15538226,792449526,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/007/SRR5239057/SRR5239057.fastq.gz,369348085,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239057/SRR5239057.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239057/SRR5239057.fastq.gz,99212c254edbf69093dc02e68959ddb6,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r2,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/007/SRR5239057,311394753,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239057,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239057,303ecf32bfff3b580c09596add05a424,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239058,12487833,636879483,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/008/SRR5239058/SRR5239058.fastq.gz,285206416,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239058/SRR5239058.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239058/SRR5239058.fastq.gz,e8c106d8a8e9b40d20e51925750f19ea,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r3,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/008/SRR5239058,243285220,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239058,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239058,c80f2929eb1edaee49358b07b41b4ffe,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239059,12480350,636497850,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/009/SRR5239059/SRR5239059.fastq.gz,285537387,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239059/SRR5239059.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239059/SRR5239059.fastq.gz,67f89e8e402c4df455be4d9d2c317d32,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r4,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/009/SRR5239059,243202388,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239059,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239059,6d05a998c13ca1767ecf2488d71a98f8,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239060,13840587,705869937,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/000/SRR5239060/SRR5239060.fastq.gz,331227497,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239060/SRR5239060.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239060/SRR5239060.fastq.gz,7f2d62e673e904b021c5fbdf71d38aef,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r5,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/000/SRR5239060,279770312,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239060,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239060,7b8d3e1ff2122027f8324566f02a7f52,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545980,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481053: Ribosome Profiling Ctrl Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312774,Ribosome Profiling Ctrl Day 8,Illumina HiSeq 1500,SRR5239061,13903399,709073349,SAMN06312774,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/001/SRR5239061/SRR5239061.fastq.gz,334196800,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239061/SRR5239061.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239061/SRR5239061.fastq.gz,d76be32f50e7185fcbeff5e132307bcb,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481053_r6,<NA>,GSM2481053,<NA>,Ribosome Profiling Ctrl Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964862,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/001/SRR5239061,281925921,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239061,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239061,1e0a158fe0c1f897bcec1c71b1005f80,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239062,10734719,547470669,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/002/SRR5239062/SRR5239062.fastq.gz,256396003,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239062/SRR5239062.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239062/SRR5239062.fastq.gz,ba58e1c5725805a633cca81711b8cd33,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r1,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/002/SRR5239062,214718394,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239062,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239062,817ebc6fdb2facad01e6d04204015689,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239063,10757923,548654073,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/003/SRR5239063/SRR5239063.fastq.gz,257530525,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239063/SRR5239063.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239063/SRR5239063.fastq.gz,7fe1580447b08a88af1bda9157ef6544,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r2,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/003/SRR5239063,215339279,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239063,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239063,58222b12e98623b4e328c76a23ec3b6e,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239064,9189103,468644253,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/004/SRR5239064/SRR5239064.fastq.gz,211216505,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239064/SRR5239064.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239064/SRR5239064.fastq.gz,3bc2b04c113a26c92d0b4e571bc909ad,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r3,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/004/SRR5239064,178707394,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239064,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239064,3a21434e3f701ad08676418a59e345d0,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239065,9168761,467606811,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/005/SRR5239065/SRR5239065.fastq.gz,211175079,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239065/SRR5239065.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239065/SRR5239065.fastq.gz,5864153032a3a20b08bbfb06c4fe814c,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r4,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/005/SRR5239065,178407650,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239065,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239065,a65261186aa73d7ad8766bdc597d1d9d,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239066,10490820,535031820,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/006/SRR5239066/SRR5239066.fastq.gz,252820899,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239066/SRR5239066.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239066/SRR5239066.fastq.gz,3465871ef24390ae940ab988fe2db07f,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r5,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/006/SRR5239066,211861534,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239066,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239066,115f61c673a83fab94bbd68a822d1c0e,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545981,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481054: Ribosome Profiling METTL3 KD1 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312773,Ribosome Profiling METTL3 KD1 Day 5,Illumina HiSeq 1500,SRR5239067,10510772,536049372,SAMN06312773,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/007/SRR5239067/SRR5239067.fastq.gz,254496510,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239067/SRR5239067.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239067/SRR5239067.fastq.gz,c4cc9b7df2e5f7b38eb52e975ce1655d,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481054_r6,<NA>,GSM2481054,<NA>,Ribosome Profiling METTL3 KD1 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964860,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/007/SRR5239067,212982597,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239067,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239067,8dce45a9c54e85209af76572a1708f10,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239068,15528375,791947125,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/008/SRR5239068/SRR5239068.fastq.gz,371459008,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239068/SRR5239068.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239068/SRR5239068.fastq.gz,26fefc4ed834bc799a1572d6052792cc,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r1,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/008/SRR5239068,311105996,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239068,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239068,7c3367394786207217c898e87c8a0188,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239069,15552791,793192341,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/009/SRR5239069/SRR5239069.fastq.gz,372780708,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239069/SRR5239069.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239069/SRR5239069.fastq.gz,2597206f145cd999786b1cdcd8892d7d,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r2,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/009/SRR5239069,311709716,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239069,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239069,fc369a2be53d52b3d75bd6ad104df891,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239070,12819970,653818470,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/000/SRR5239070/SRR5239070.fastq.gz,295430416,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239070/SRR5239070.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239070/SRR5239070.fastq.gz,48a9fcdc280f2b176a39606a1af016cd,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r3,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/000/SRR5239070,249810462,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239070,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239070,d80e711b86c220ea2a6b461252a26d47,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239071,12805289,653069739,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/001/SRR5239071/SRR5239071.fastq.gz,295611063,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239071/SRR5239071.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239071/SRR5239071.fastq.gz,1b5578ef1227a97901aabbf2989d828f,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r4,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/001/SRR5239071,249600008,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239071,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239071,d56d894753fd060f29ef408eabcee285,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239072,14501119,739557069,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/002/SRR5239072/SRR5239072.fastq.gz,350257595,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239072/SRR5239072.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239072/SRR5239072.fastq.gz,2b97a31e96f8d91e0e1253c26fd1728f,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r5,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/002/SRR5239072,293285842,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239072,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239072,eec7d0915f42eb4abdccd95fea6c59c9,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545982,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481055: Ribosome Profiling METTL3 KD1 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312772,Ribosome Profiling METTL3 KD1 Day 8,Illumina HiSeq 1500,SRR5239073,14557524,742433724,SAMN06312772,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/003/SRR5239073/SRR5239073.fastq.gz,353122550,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239073/SRR5239073.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239073/SRR5239073.fastq.gz,2b38337b7f9bf0bd8e3565417d8306f3,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481055_r6,<NA>,GSM2481055,<NA>,Ribosome Profiling METTL3 KD1 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964861,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/003/SRR5239073,295320805,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239073,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239073,c09b9dd4d5220316fe3b8662688ec38d,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239074,10128748,516566148,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/004/SRR5239074/SRR5239074.fastq.gz,244919753,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239074/SRR5239074.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239074/SRR5239074.fastq.gz,db3e7e3b0eee0eb1e42ed975da192658,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r1,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/004/SRR5239074,204054388,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239074,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239074,95538bdb87940868da1dad4c0486c758,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239075,10149979,517648929,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/005/SRR5239075/SRR5239075.fastq.gz,245554818,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239075/SRR5239075.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239075/SRR5239075.fastq.gz,a0f91a9e0bdeefe76d0d5be6a2c19416,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r2,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/005/SRR5239075,204337323,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239075,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239075,8ee609d9aa5ea7f13fda8bcd1d0c382e,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239076,8844053,451046703,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/006/SRR5239076/SRR5239076.fastq.gz,206662863,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239076/SRR5239076.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/006/SRR5239076/SRR5239076.fastq.gz,301143a811737ee4cb19afdb1f6e01ee,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r3,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/006/SRR5239076,173606799,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239076,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/006/SRR5239076,94c19f62373ca7288e1d75a20e799e8b,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239077,8826385,450145635,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/007/SRR5239077/SRR5239077.fastq.gz,206222976,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239077/SRR5239077.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/007/SRR5239077/SRR5239077.fastq.gz,31c37d29f73172e9e7b4a199d52074cc,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r4,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/007/SRR5239077,173083117,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239077,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/007/SRR5239077,6cc7a1e7866e5e7b37cde697e9ae57eb,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239078,10169123,518625273,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/008/SRR5239078/SRR5239078.fastq.gz,248769366,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239078/SRR5239078.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/008/SRR5239078/SRR5239078.fastq.gz,776a1af3d6badf336c46b4b1c03d1d73,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r5,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/008/SRR5239078,207087087,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239078,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/008/SRR5239078,e33123a680e8c1299ad7d55c59e0df5f,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545983,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481056: Ribosome Profiling METTL3 KD2 Day 5; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312771,Ribosome Profiling METTL3 KD2 Day 5,Illumina HiSeq 1500,SRR5239079,10199333,520165983,SAMN06312771,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/009/SRR5239079/SRR5239079.fastq.gz,250235732,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239079/SRR5239079.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/009/SRR5239079/SRR5239079.fastq.gz,702fcfeb08656b806a3191756258d888,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481056_r6,<NA>,GSM2481056,<NA>,Ribosome Profiling METTL3 KD2 Day 5,<NA>,<NA>,<NA>,<NA>,SRS1964863,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/009/SRR5239079,208129233,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239079,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/009/SRR5239079,4a3597c266cfec8ac8747f7138523bc2,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239080,13771867,702365217,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/000/SRR5239080/SRR5239080.fastq.gz,333394651,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239080/SRR5239080.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/000/SRR5239080/SRR5239080.fastq.gz,f56242e19ed2ad07a9e0ab6af6d8ebae,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r1,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/000/SRR5239080,275836837,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239080,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/000/SRR5239080,a02a2a5b86e45ad77d59efbc4936e312,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239081,13769712,702255312,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/001/SRR5239081/SRR5239081.fastq.gz,334095813,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239081/SRR5239081.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/001/SRR5239081/SRR5239081.fastq.gz,0644bfe0898131b4f470c6899986a468,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r2,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/001/SRR5239081,275957437,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239081,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/001/SRR5239081,be44da39d63606e13cbeb4386478d140,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239082,12473768,636162168,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/002/SRR5239082/SRR5239082.fastq.gz,291671193,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239082/SRR5239082.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/002/SRR5239082/SRR5239082.fastq.gz,a779da775c66a4653b2d83bdf742cb5b,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r3,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/002/SRR5239082,243373854,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239082,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/002/SRR5239082,23926067e3cd0dcd412156b5ac91059e,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239083,12393265,632056515,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/003/SRR5239083/SRR5239083.fastq.gz,290444070,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239083/SRR5239083.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/003/SRR5239083/SRR5239083.fastq.gz,d59025f509d2e2e09cb58f18221e9caa,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r4,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/003/SRR5239083,241948398,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239083,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/003/SRR5239083,27e6068e0db767505651d0c6187fbbd2,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239084,14602972,744751572,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/004/SRR5239084/SRR5239084.fastq.gz,357691368,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239084/SRR5239084.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/004/SRR5239084/SRR5239084.fastq.gz,af0d9ed32879bdd1f2de72dae568cf40,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r5,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/004/SRR5239084,295663803,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239084,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/004/SRR5239084,d5f8262dc95d131f316d417a7d9011a2,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA371833,SRX2545984,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,Illumina HiSeq 1500 sequencing; GSM2481057: Ribosome Profiling METTL3 KD2 Day 8; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN06312770,Ribosome Profiling METTL3 KD2 Day 8,Illumina HiSeq 1500,SRR5239085,14574634,743306334,SAMN06312770,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,leukemia cell line MOLM13,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2481057,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR523/005/SRR5239085/SRR5239085.fastq.gz,358588060,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239085/SRR5239085.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR523/005/SRR5239085/SRR5239085.fastq.gz,49a9b70b16854a0e70bfa075bf321f05,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2481057_r6,<NA>,GSM2481057,<NA>,Ribosome Profiling METTL3 KD2 Day 8,<NA>,<NA>,<NA>,<NA>,SRS1964864,SRP099081,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR523/005/SRR5239085,296041275,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239085,ftp.sra.ebi.ac.uk/vol1/srr/SRR523/005/SRR5239085,7e7804cbbe9153ef5c9ffd046bbc88a5,<NA>,GSE94613,Promoter-bound METTL3 maintains myeloid leukemia by m6A-dependent regulation of protein translation,<NA>,<NA>,SRA536650,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652914,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617379,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,Illumina HiSeq 2500,SRR5356885,92012581,4600629050,SAMN06617379,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X24,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/005/SRR5356885/SRR5356885.fastq.gz,2759280290,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356885/SRR5356885.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356885/SRR5356885.fastq.gz,c4e6eed35adeb5ae68d2886a56cebf53,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X24,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X24_151104_D00294_0206_BC81GJANXX_3.fastq.gz,<NA>,33988_alk_3,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058105,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/005/SRR5356885,2344373906,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356885,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356885,2c8d864eedd316a16b91f8cc595fab6a,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652916,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617378,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,Illumina HiSeq 2500,SRR5356887,62093655,3104682750,SAMN06617378,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X22,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/007/SRR5356887/SRR5356887.fastq.gz,2190231072,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356887/SRR5356887.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356887/SRR5356887.fastq.gz,52e40e67fcd7de2470cff4db841f37c6,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X22,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X22_151028_D00294_0205_BC81P5ANXX_8.fastq.gz,<NA>,33988_alk_2,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058106,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/007/SRR5356887,1785409975,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356887,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356887,1e3ebf153c868babec9fe5ec7886b517,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652918,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617377,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,Illumina HiSeq 2500,SRR5356889,100563944,5028197200,SAMN06617377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X20,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/009/SRR5356889/SRR5356889.fastq.gz,2708633003,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/009/SRR5356889/SRR5356889.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/009/SRR5356889/SRR5356889.fastq.gz,508896a6adf14d2c6fe7290a858f6a00,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X20,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X20_151028_D00294_0205_BC81P5ANXX_7.fastq.gz,<NA>,33988_alk_1,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058107,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/009/SRR5356889,2274030170,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/009/SRR5356889,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/009/SRR5356889,12b5ec258727444c2e109adf9aeaa219,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652920,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617376,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,Illumina HiSeq 2500,SRR5356891,83809807,4190490350,SAMN06617376,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X18,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/001/SRR5356891/SRR5356891.fastq.gz,2584599662,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/001/SRR5356891/SRR5356891.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/001/SRR5356891/SRR5356891.fastq.gz,0d1cab86feb6be43bdf79a422a61d2d4,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X18,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X18_151028_D00294_0205_BC81P5ANXX_6.fastq.gz,<NA>,33988_gly_3,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 3 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058108,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/001/SRR5356891,2144235114,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/001/SRR5356891,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/001/SRR5356891,2c31c0b34d6024da75d3cfc437016735,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652922,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617375,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,Illumina HiSeq 2500,SRR5356893,90928652,4546432600,SAMN06617375,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X16,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/003/SRR5356893/SRR5356893.fastq.gz,2494036133,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/003/SRR5356893/SRR5356893.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/003/SRR5356893/SRR5356893.fastq.gz,fe8dae2fc7e9361e7d16186163b17227,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X16,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X16_151028_D00294_0205_BC81P5ANXX_5.fastq.gz,<NA>,33988_gly_2,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 2 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058109,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/003/SRR5356893,2184499170,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/003/SRR5356893,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/003/SRR5356893,2bc439bce46bf3357319448e9475d6e5,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652924,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,287,Pseudomonas aeruginosa,OTHER,TRANSCRIPTOMIC,other,SAMN06617374,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,Illumina HiSeq 2500,SRR5356895,106331232,5316561600,SAMN06617374,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1984-01-04,<NA>,<NA>,\"USA: Ponca City, OK\",<NA>,<NA>,<NA>,<NA>,ATCC:33988,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X14,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/005/SRR5356895/SRR5356895.fastq.gz,3378368702,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356895/SRR5356895.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356895/SRR5356895.fastq.gz,ad65e4a699d3a21e143d3b8c42721dd7,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,fuel storage tank,2017-03-19,<NA>,SINGLE,11836X14,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X14_151028_D00294_0205_BC81P5ANXX_4.fastq.gz,<NA>,33988_gly_1,<NA>,Pseudomonas aeruginosa ATCC 33988 replicate 1 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058110,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/005/SRR5356895,2727936094,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356895,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356895,2420fcd3f6402196f0956c1f13829b24,ATCC 33988,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652926,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617373,Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,Illumina HiSeq 2500,SRR5356897,101520011,5076000550,SAMN06617373,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X12,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/007/SRR5356897/SRR5356897.fastq.gz,2556946495,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356897/SRR5356897.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356897/SRR5356897.fastq.gz,ebb6984c003a30959a3136040097c6a9,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X12,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X12_151028_D00294_0205_BC81P5ANXX_3.fastq.gz,<NA>,PAO1_alk_3,<NA>,Pseudomonas aeruginosa PAO1 replicate 3 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058111,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/007/SRR5356897,2238350203,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356897,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356897,7bbd0c332d66670a639c73f48c97a00c,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652928,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617372,Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,Illumina HiSeq 2500,SRR5356899,83560401,4178020050,SAMN06617372,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X10,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/009/SRR5356899/SRR5356899.fastq.gz,2617919791,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/009/SRR5356899/SRR5356899.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/009/SRR5356899/SRR5356899.fastq.gz,ef3c80b5c26b7e6b4cb7c92fd05fae91,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X10,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X10_151028_D00294_0205_BC81P5ANXX_2.fastq.gz,<NA>,PAO1_alk_2,<NA>,Pseudomonas aeruginosa PAO1 replicate 2 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058112,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/009/SRR5356899,2187391254,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/009/SRR5356899,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/009/SRR5356899,69cd207151da56882cad123809770cfc,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652930,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617371,Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,Illumina HiSeq 2500,SRR5356901,94948217,4747410850,SAMN06617371,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X8,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/001/SRR5356901/SRR5356901.fastq.gz,2511425092,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/001/SRR5356901/SRR5356901.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/001/SRR5356901/SRR5356901.fastq.gz,923a4bfef7b5279a2ff3e8e36b59a8da,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X8,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X8_151022_D00294_0204_AC81FHANXX_8.fastq.gz,<NA>,PAO1_alk_1,<NA>,Pseudomonas aeruginosa PAO1 replicate 1 grown in n-alkanes,<NA>,<NA>,<NA>,<NA>,SRS2058113,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/001/SRR5356901,2151698241,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/001/SRR5356901,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/001/SRR5356901,7028a5502274c53b026d89374878dc9a,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652932,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617370,Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,Illumina HiSeq 2500,SRR5356903,71767127,3588356350,SAMN06617370,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X6,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/003/SRR5356903/SRR5356903.fastq.gz,2147268106,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/003/SRR5356903/SRR5356903.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/003/SRR5356903/SRR5356903.fastq.gz,236b2f134272bbeb1bb0f1c88bd3ab88,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X6_151022_D00294_0204_AC81FHANXX_7.fastq.gz,<NA>,PAO1_gly_3,<NA>,Pseudomonas aeruginosa PAO1 replicate 3 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058114,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/003/SRR5356903,1812653965,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/003/SRR5356903,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/003/SRR5356903,d9d71f853d1f8cb3a3759dfaed6d8cd4,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652934,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617369,Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,Illumina HiSeq 2500,SRR5356905,90030430,4501521500,SAMN06617369,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X4,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/005/SRR5356905/SRR5356905.fastq.gz,2441472616,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356905/SRR5356905.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/005/SRR5356905/SRR5356905.fastq.gz,805911a03f1e9a2b9e215d3380d4134a,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X4_151022_D00294_0204_AC81FHANXX_6.fastq.gz,<NA>,PAO1_gly_2,<NA>,Pseudomonas aeruginosa PAO1 replicate 2 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058115,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/005/SRR5356905,2065038893,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356905,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/005/SRR5356905,d78026bd5bffe8ea16bd3efaa4e6e23d,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA379630,SRX2652936,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,Illumina HiSeq 2500 sequencing; Ribosome profiling of monosomes from Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,208964,Pseudomonas aeruginosa PAO1,OTHER,TRANSCRIPTOMIC,other,SAMN06617368,Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,Illumina HiSeq 2500,SRR5356907,73952429,3697621450,SAMN06617368,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1955-01-01,<NA>,<NA>,Australia: Melbourne,<NA>,<NA>,<NA>,<NA>,ATCC: 15692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,11836X2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR535/007/SRR5356907/SRR5356907.fastq.gz,2068004986,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356907/SRR5356907.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR535/007/SRR5356907/SRR5356907.fastq.gz,31fe83c39b3ce219b937e56bbb177eed,2017-03-19,2017-03-19,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,infected wound,2017-03-19,<NA>,SINGLE,11836X2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,11836X2_151022_D00294_0204_AC81FHANXX_5.fastq.gz,<NA>,PAO1_gly_1,<NA>,Pseudomonas aeruginosa PAO1 replicate 1 grown in Glycerol,<NA>,<NA>,<NA>,<NA>,SRS2058116,SRP102099,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR535/007/SRR5356907,1778133075,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356907,ftp.sra.ebi.ac.uk/vol1/srr/SRR535/007/SRR5356907,be0794b7ff327439e9ae21192e07f40d,PAO1,PRJNA379630,Expression Profiling Uncovers Adaptations for Growth and Survival of Pseudomonas aeruginosa Strains,<NA>,<NA>,SRA547049,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA384569,SRX2766861,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841405,RFP for puf3 ko mutant replicate 1,Illumina HiSeq 2000,SRR5483532,31667620,1583381000,SAMN06841405,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,PUF3 RFP 1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR548/002/SRR5483532/SRR5483532.fastq.gz,1205978204,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/002/SRR5483532/SRR5483532.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/002/SRR5483532/SRR5483532.fastq.gz,eae8597f0d5f77abc1496a9970bf8639,2017-05-21,2017-05-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-05-21,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,PUF3 RFP 1,<NA>,S1,<NA>,RFP for puf3 ko mutant replicate 1,<NA>,<NA>,<NA>,<NA>,SRS2150983,SRP105337,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR548/002/SRR5483532,1042705258,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/002/SRR5483532,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/002/SRR5483532,d3e839709242e8f0797542360b3ef778,puf3 mutant,PRJNA384569,Transcriptional and translational regulation of PUF3p in yeast,<NA>,<NA>,SRA557275,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA384569,SRX2766864,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant rep2,Illumina HiSeq 2000 sequencing; Ribosome profiling for puf3 mutant rep2,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841406,RFP for puf3 ko mutant replicate 2,Illumina HiSeq 2000,SRR5483533,33068533,1653426650,SAMN06841406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,PUF3 RFP2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR548/003/SRR5483533/SRR5483533.fastq.gz,1209049278,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/003/SRR5483533/SRR5483533.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/003/SRR5483533/SRR5483533.fastq.gz,f7ddf37c110f95e4f68ceaa88fc5bf54,2017-05-21,2017-05-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-05-21,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,PUF3 RFP2,<NA>,S2,<NA>,RFP for puf3 ko mutant replicate 2,<NA>,<NA>,<NA>,<NA>,SRS2150984,SRP105337,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR548/003/SRR5483533,1060329444,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/003/SRR5483533,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/003/SRR5483533,67de5a656e88173409935d5a3e0c0105,puf3 mutant,PRJNA384569,Transcriptional and translational regulation of PUF3p in yeast,<NA>,<NA>,SRA557275,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA384569,SRX2766865,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep1,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep1,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841407,RFP for WT replicate 1,Illumina HiSeq 2000,SRR5483534,24523690,1226184500,SAMN06841407,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT RFP1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR548/004/SRR5483534/SRR5483534.fastq.gz,870221154,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/004/SRR5483534/SRR5483534.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/004/SRR5483534/SRR5483534.fastq.gz,5a75d065b6fc64bd4ad21e72dadff804,2017-05-21,2017-05-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-05-21,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT RFP1,<NA>,S3,<NA>,RFP for WT replicate 1,<NA>,<NA>,<NA>,<NA>,SRS2150985,SRP105337,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR548/004/SRR5483534,785704225,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/004/SRR5483534,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/004/SRR5483534,4d72479f6924c57d98be40923ce7a897,BY4742,PRJNA384569,Transcriptional and translational regulation of PUF3p in yeast,<NA>,<NA>,SRA557275,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA384569,SRX2766866,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep2,Illumina HiSeq 2000 sequencing; Ribosome profiling WT rep2,4932,Saccharomyces cerevisiae,miRNA-Seq,TRANSCRIPTOMIC,PCR,SAMN06841408,RFP for WT replicate 2,Illumina HiSeq 2000,SRR5483539,16691481,834574050,SAMN06841408,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,WT RFP2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR548/009/SRR5483539/SRR5483539.fastq.gz,552515094,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/009/SRR5483539/SRR5483539.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR548/009/SRR5483539/SRR5483539.fastq.gz,bf57a06852a1dceef616022181c29d20,2017-05-21,2017-05-21,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-05-21,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WT RFP2,<NA>,S4,<NA>,RFP for WT replicate 2,<NA>,<NA>,<NA>,<NA>,SRS2150986,SRP105337,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR548/009/SRR5483539,526809878,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/009/SRR5483539,ftp.sra.ebi.ac.uk/vol1/srr/SRR548/009/SRR5483539,013ad6424fa3cbf357672588c4446e6c,BY4742,PRJNA384569,Transcriptional and translational regulation of PUF3p in yeast,<NA>,<NA>,SRA557275,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA390134,SRX2902855,NextSeq 500 sequencing; GSM2664256: wild type ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664256: wild type ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220960,wild type ribosome profiling replicate 1,NextSeq 500,SRR5667267,46651854,1621851282,SAMN07220960,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664256,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/007/SRR5667267/SRR5667267.fastq.gz,845620694,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/007/SRR5667267/SRR5667267.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/007/SRR5667267/SRR5667267.fastq.gz,203d05399f16e9d59a374fd4176b0ee7,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664256_r1,<NA>,GSM2664256,<NA>,wild type ribosome profiling replicate 1,<NA>,<NA>,<NA>,<NA>,SRS2269413,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/007/SRR5667267,790656128,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/007/SRR5667267,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/007/SRR5667267,8482003b4f0fe18902c1145245181d84,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902856,NextSeq 500 sequencing; GSM2664257: wild type ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664257: wild type ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220959,wild type ribosome profiling replicate 2,NextSeq 500,SRR5667268,122734505,4216803822,SAMN07220959,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664257,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/008/SRR5667268/SRR5667268.fastq.gz,2148789443,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/008/SRR5667268/SRR5667268.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/008/SRR5667268/SRR5667268.fastq.gz,87128e073bb14f21d82ea77a09a9eea5,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664257_r1,<NA>,GSM2664257,<NA>,wild type ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS2269414,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/008/SRR5667268,2046001247,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/008/SRR5667268,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/008/SRR5667268,3b927e4957ea6477fe747e29814599d1,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902857,NextSeq 500 sequencing; GSM2664258: wild type ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664258: wild type ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220958,wild type ribosome profiling replicate 3,NextSeq 500,SRR5667269,45156367,1539402070,SAMN07220958,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664258,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/009/SRR5667269/SRR5667269.fastq.gz,747955309,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/009/SRR5667269/SRR5667269.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/009/SRR5667269/SRR5667269.fastq.gz,fa93b94510636a6fa61b2c4537dba30a,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664258_r1,<NA>,GSM2664258,<NA>,wild type ribosome profiling replicate 3,<NA>,<NA>,<NA>,<NA>,SRS2269415,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/009/SRR5667269,724210768,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/009/SRR5667269,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/009/SRR5667269,b5ba1af123e378386e2abfe4a075e4e4,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902864,NextSeq 500 sequencing; GSM2664265: GluRIIA ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664265: GluRIIA ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220951,GluRIIA ribosome profiling replicate 1,NextSeq 500,SRR5667276,35199688,1194135764,SAMN07220951,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664265,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/006/SRR5667276/SRR5667276.fastq.gz,585167551,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/006/SRR5667276/SRR5667276.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/006/SRR5667276/SRR5667276.fastq.gz,e63f63cd939914cdba5d58b0a9163bb8,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664265_r1,<NA>,GSM2664265,<NA>,GluRIIA ribosome profiling replicate 1,<NA>,<NA>,<NA>,<NA>,SRS2269422,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/006/SRR5667276,563789445,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/006/SRR5667276,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/006/SRR5667276,7cb43a932b68388836cbad9db0b54740,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902865,NextSeq 500 sequencing; GSM2664266: GluRIIA ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664266: GluRIIA ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220950,GluRIIA ribosome profiling replicate 2,NextSeq 500,SRR5667277,78959629,2610438767,SAMN07220950,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664266,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/007/SRR5667277/SRR5667277.fastq.gz,1299719825,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/007/SRR5667277/SRR5667277.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/007/SRR5667277/SRR5667277.fastq.gz,5702346baecffd8b254eb9bcfc027c49,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664266_r1,<NA>,GSM2664266,<NA>,GluRIIA ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS2269423,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/007/SRR5667277,1237800996,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/007/SRR5667277,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/007/SRR5667277,67007cd9ba20024ab550adc91d8aa33e,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902866,NextSeq 500 sequencing; GSM2664267: GluRIIA ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664267: GluRIIA ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220949,GluRIIA ribosome profiling replicate 3,NextSeq 500,SRR5667278,20752434,676573468,SAMN07220949,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664267,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/008/SRR5667278/SRR5667278.fastq.gz,298031311,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/008/SRR5667278/SRR5667278.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/008/SRR5667278/SRR5667278.fastq.gz,913dd763e510dcaaab4bdb546f5ccd46,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664267_r1,<NA>,GSM2664267,<NA>,GluRIIA ribosome profiling replicate 3,<NA>,<NA>,<NA>,<NA>,SRS2269424,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/008/SRR5667278,300705871,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/008/SRR5667278,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/008/SRR5667278,93246517d1fd360f7ccf437f28b7d30d,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902870,NextSeq 500 sequencing; GSM2664271: Tor-OE ribosome profiling replicate 1; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664271: Tor-OE ribosome profiling replicate 1; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220945,Tor-OE ribosome profiling replicate 1,NextSeq 500,SRR5667282,56343352,1940386794,SAMN07220945,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664271,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/002/SRR5667282/SRR5667282.fastq.gz,1039067482,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/002/SRR5667282/SRR5667282.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/002/SRR5667282/SRR5667282.fastq.gz,89920c5a5a28d3682d9270a97e2a0d86,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664271_r1,<NA>,GSM2664271,<NA>,Tor-OE ribosome profiling replicate 1,<NA>,<NA>,<NA>,<NA>,SRS2269428,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/002/SRR5667282,948500321,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/002/SRR5667282,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/002/SRR5667282,148ab23ca2783ca7acb2cac26b0be304,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902871,NextSeq 500 sequencing; GSM2664272: Tor-OE ribosome profiling replicate 2; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664272: Tor-OE ribosome profiling replicate 2; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220944,Tor-OE ribosome profiling replicate 2,NextSeq 500,SRR5667283,32872272,1104998701,SAMN07220944,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664272,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/003/SRR5667283/SRR5667283.fastq.gz,560825724,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/003/SRR5667283/SRR5667283.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/003/SRR5667283/SRR5667283.fastq.gz,3c3dadb82875b803f2ceee2df47debf9,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664272_r1,<NA>,GSM2664272,<NA>,Tor-OE ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS2269429,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/003/SRR5667283,536285119,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/003/SRR5667283,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/003/SRR5667283,9e32a4efdd3d94394e05101a81fab443,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA390134,SRX2902872,NextSeq 500 sequencing; GSM2664273: Tor-OE ribosome profiling replicate 3; Drosophila melanogaster; OTHER,NextSeq 500 sequencing; GSM2664273: Tor-OE ribosome profiling replicate 3; Drosophila melanogaster; OTHER,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,other,SAMN07220943,Tor-OE ribosome profiling replicate 3,NextSeq 500,SRR5667284,69053087,2392506309,SAMN07220943,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2664273,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR566/004/SRR5667284/SRR5667284.fastq.gz,1184225838,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/004/SRR5667284/SRR5667284.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR566/004/SRR5667284/SRR5667284.fastq.gz,6502e27a509e302f192dcd164092943b,2017-12-01,2017-12-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2664273_r1,<NA>,GSM2664273,<NA>,Tor-OE ribosome profiling replicate 3,<NA>,<NA>,<NA>,<NA>,SRS2269430,SRP108999,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR566/004/SRR5667284,1139635695,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/004/SRR5667284,ftp.sra.ebi.ac.uk/vol1/srr/SRR566/004/SRR5667284,ebd73c99c7eba82859d3b1f4c68e5239,<NA>,GSE99920,Transcriptional and ribosome profiling of Drosophila 3rd instar larvae muscle,<NA>,<NA>,SRA573547,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,body wall muscle,<NA>\nPRJNA391352,SRX2943745,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266693,\"Ribosome Profiling Input for WT, rep1\",Illumina HiSeq 2000,SRR5735992,16800285,2553643320,SAMN07266693,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678049,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_2.fastq.gz,804802402;828198168,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5735992/SRR5735992_2.fastq.gz,ebc3f5ad830f5183c99d3070401486cb;83a503b49f2045fdbd1e02f8fad3e8b6,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678049_r1,<NA>,GSM2678049,<NA>,\"Ribosome Profiling Input for WT, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303471,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/002/SRR5735992,1405154213,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/002/SRR5735992,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/002/SRR5735992,479d236a58ae07628cc84a5f5a02b23f,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943745,\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678049: Ribosome Profiling Input for WT, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266693,\"Ribosome Profiling Input for WT, rep1\",Illumina HiSeq 2000,SRR5735993,8361509,1270949368,SAMN07266693,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678049,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_2.fastq.gz,407874131;415209435,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5735993/SRR5735993_2.fastq.gz,d8aa96d52fda1d99d2b71918fc7b4223;b3660a62af134c805a4ee4f4a74e292e,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678049_r2,<NA>,GSM2678049,<NA>,\"Ribosome Profiling Input for WT, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303471,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/003/SRR5735993,704034539,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/003/SRR5735993,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/003/SRR5735993,c158e5f104d2b91d628e95acbb31176d,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943746,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266700,\"Ribosome Profiling Input for WT, rep2\",Illumina HiSeq 2000,SRR5735994,15807404,2402725408,SAMN07266700,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678050,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_2.fastq.gz,801234949;819218542,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/004/SRR5735994/SRR5735994_2.fastq.gz,37aaab510e25c2639d8c4307d42bfb82;e5d1cf0a8366ecfdf64b6123332d13c7,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678050_r1,<NA>,GSM2678050,<NA>,\"Ribosome Profiling Input for WT, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303472,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/004/SRR5735994,1345811197,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/004/SRR5735994,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/004/SRR5735994,119011a0cbbebdc85fae7b2f836c196e,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943746,\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678050: Ribosome Profiling Input for WT, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266700,\"Ribosome Profiling Input for WT, rep2\",Illumina HiSeq 2000,SRR5735995,7892805,1199706360,SAMN07266700,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678050,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_2.fastq.gz,407866159;413021316,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/005/SRR5735995/SRR5735995_2.fastq.gz,bceb22e0da4c99e078f8e96b085c469b;687afc05ad13f854f36d4dc0f89d6856,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678050_r2,<NA>,GSM2678050,<NA>,\"Ribosome Profiling Input for WT, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303472,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/005/SRR5735995,678949413,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/005/SRR5735995,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/005/SRR5735995,ea56f284842195a7150f06d9a174c18b,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943747,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266699,\"Ribosome Profiling Input for KO, rep1\",Illumina HiSeq 2000,SRR5735996,17287993,2627774936,SAMN07266699,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678051,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_2.fastq.gz,891067824;899971260,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/006/SRR5735996/SRR5735996_2.fastq.gz,4cd32c9930963e22ef607f6aae16b47f;c738ec2e04b942511c2d59bef20be7bc,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678051_r1,<NA>,GSM2678051,<NA>,\"Ribosome Profiling Input for KO, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303473,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/006/SRR5735996,1498742247,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/006/SRR5735996,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/006/SRR5735996,c91d70b890fb41981bad92e105c66ce6,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943747,\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678051: Ribosome Profiling Input for KO, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266699,\"Ribosome Profiling Input for KO, rep1\",Illumina HiSeq 2000,SRR5735997,8808526,1338895952,SAMN07266699,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678051,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_2.fastq.gz,462613505;463762946,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/007/SRR5735997/SRR5735997_2.fastq.gz,d3125aae7e01c8eaafa691729b4f1fb1;5f1626943ea9a844e0bffc88388b6e37,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678051_r2,<NA>,GSM2678051,<NA>,\"Ribosome Profiling Input for KO, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303473,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/007/SRR5735997,772648245,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/007/SRR5735997,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/007/SRR5735997,17bc9fe5a2f598aaad1b75d5e1fbb2cf,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943748,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266698,\"Ribosome Profiling Input for KO, rep2\",Illumina HiSeq 2000,SRR5735998,16011015,2433674280,SAMN07266698,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_2.fastq.gz,790579007;816417040,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/008/SRR5735998/SRR5735998_2.fastq.gz,de99b58cbeb172fe569a4c6c5e0d9671;94aeabba5d29a6b0e595284a2e5ebc45,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678052_r1,<NA>,GSM2678052,<NA>,\"Ribosome Profiling Input for KO, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303474,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/008/SRR5735998,1386290747,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/008/SRR5735998,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/008/SRR5735998,48c747f87034555415d2c10d0dcb171d,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943748,\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678052: Ribosome Profiling Input for KO, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266698,\"Ribosome Profiling Input for KO, rep2\",Illumina HiSeq 2000,SRR5735999,8221919,1249731688,SAMN07266698,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678052,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_2.fastq.gz,414064302;423285504,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/009/SRR5735999/SRR5735999_2.fastq.gz,7444dfa892a9094a8091bb647ec9f497;af05df09f4f73074ba26141189fa971a,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678052_r2,<NA>,GSM2678052,<NA>,\"Ribosome Profiling Input for KO, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303474,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/009/SRR5735999,719400857,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/009/SRR5735999,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/009/SRR5735999,39b179e52d5dae3a6665f9ff009591a7,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943749,\"Illumina HiSeq 2000 sequencing; GSM2678053: WT Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678053: WT Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266697,\"WT Ribosome Profiling, rep1\",Illumina HiSeq 2000,SRR5736000,49930735,3794735860,SAMN07266697,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678053,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/000/SRR5736000/SRR5736000.fastq.gz,1571641698,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/000/SRR5736000/SRR5736000.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/000/SRR5736000/SRR5736000.fastq.gz,9c67853e0233bd4179850ee02de8fad0,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678053_r1,<NA>,GSM2678053,<NA>,\"WT Ribosome Profiling, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303475,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/000/SRR5736000,1667435954,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/000/SRR5736000,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/000/SRR5736000,7c7369996a5f43724b34bd3027e76af4,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943750,\"Illumina HiSeq 2000 sequencing; GSM2678054: WT Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678054: WT Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266696,\"WT Ribosome Profiling, rep2\",Illumina HiSeq 2000,SRR5736001,72687482,5524248632,SAMN07266696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678054,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/001/SRR5736001/SRR5736001.fastq.gz,2260813739,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/001/SRR5736001/SRR5736001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/001/SRR5736001/SRR5736001.fastq.gz,091d0b6b5b7841b7e7e877f1b85a8d46,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678054_r1,<NA>,GSM2678054,<NA>,\"WT Ribosome Profiling, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303476,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/001/SRR5736001,2409348721,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/001/SRR5736001,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/001/SRR5736001,4823b21fd874b9157c074c89e4e1f374,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943751,\"Illumina HiSeq 2000 sequencing; GSM2678055: KO Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678055: KO Ribosome Profiling, rep1; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266695,\"KO Ribosome Profiling, rep1\",Illumina HiSeq 2000,SRR5736002,64000307,4864023332,SAMN07266695,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678055,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/002/SRR5736002/SRR5736002.fastq.gz,2097265673,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5736002/SRR5736002.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/002/SRR5736002/SRR5736002.fastq.gz,cebfeab3adb62d610f29af12bb593ac3,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678055_r1,<NA>,GSM2678055,<NA>,\"KO Ribosome Profiling, rep1\",<NA>,<NA>,<NA>,<NA>,SRS2303477,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/002/SRR5736002,2156346787,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/002/SRR5736002,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/002/SRR5736002,b582a2fabfee345e8b50b256c6fdad67,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA391352,SRX2943752,\"Illumina HiSeq 2000 sequencing; GSM2678056: KO Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",\"Illumina HiSeq 2000 sequencing; GSM2678056: KO Ribosome Profiling, rep2; Mus musculus; RNA-Seq\",10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07266694,\"KO Ribosome Profiling, rep2\",Illumina HiSeq 2000,SRR5736003,64705916,4917649616,SAMN07266694,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,CD4+ T cells,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2678056,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR573/003/SRR5736003/SRR5736003.fastq.gz,1964225704,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5736003/SRR5736003.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR573/003/SRR5736003/SRR5736003.fastq.gz,9629a2d184f298c8189c69e9f0c0d166,2017-10-17,2017-10-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-10-17,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2678056_r1,<NA>,GSM2678056,<NA>,\"KO Ribosome Profiling, rep2\",<NA>,<NA>,<NA>,<NA>,SRS2303478,SRP110047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR573/003/SRR5736003,2145811383,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/003/SRR5736003,ftp.sra.ebi.ac.uk/vol1/srr/SRR573/003/SRR5736003,1c7c9ab122fa6740e6f4ccc1003c91ed,<NA>,GSE100332,Next-generation sequencing measuring ribosome mRNA occupancy and translation efficiency in CD4+ T cells isolated from Mettl3 KO and WT mice,<NA>,<NA>,SRA578725,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA392904,SRX2979029,Illumina HiSeq 4000 sequencing; GSM2692350: ribosome profiling 0h; Mus musculus; OTHER,Illumina HiSeq 4000 sequencing; GSM2692350: ribosome profiling 0h; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07312004,ribosome profiling 0h,Illumina HiSeq 4000,SRR5799562,64408917,1800217292,SAMN07312004,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,macrophage,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2692350,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR579/002/SRR5799562/SRR5799562.fastq.gz,1543605863,ftp.sra.ebi.ac.uk/vol1/fastq/SRR579/002/SRR5799562/SRR5799562.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR579/002/SRR5799562/SRR5799562.fastq.gz,e3937fa08159b23847c7f7ba1e00e8dc,2017-12-16,2017-12-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-16,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2692350_r1,<NA>,GSM2692350,<NA>,ribosome profiling 0h,<NA>,<NA>,<NA>,<NA>,SRS2332923,SRP110982,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR579/002/SRR5799562,1250157142,ftp.sra.ebi.ac.uk/vol1/srr/SRR579/002/SRR5799562,ftp.sra.ebi.ac.uk/vol1/srr/SRR579/002/SRR5799562,70efec1f9badfeb3f75fd9badad4ebdc,C57BL/6,GSE100739,Ribosome binding RNA from mouse macrophage cells,<NA>,<NA>,SRA583356,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,peritoneum,<NA>\nPRJNA392904,SRX2979030,Illumina HiSeq 4000 sequencing; GSM2692351: ribosome profiling 12h; Mus musculus; OTHER,Illumina HiSeq 4000 sequencing; GSM2692351: ribosome profiling 12h; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07312003,ribosome profiling 12h,Illumina HiSeq 4000,SRR5799563,142369751,4133742550,SAMN07312003,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,macrophage,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2692351,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR579/003/SRR5799563/SRR5799563.fastq.gz,3463650493,ftp.sra.ebi.ac.uk/vol1/fastq/SRR579/003/SRR5799563/SRR5799563.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR579/003/SRR5799563/SRR5799563.fastq.gz,184c39afad204aaf8615a8a1ff1aa9e2,2017-12-16,2017-12-16,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-12-16,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2692351_r1,<NA>,GSM2692351,<NA>,ribosome profiling 12h,<NA>,<NA>,<NA>,<NA>,SRS2332924,SRP110982,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR579/003/SRR5799563,2835170622,ftp.sra.ebi.ac.uk/vol1/srr/SRR579/003/SRR5799563,ftp.sra.ebi.ac.uk/vol1/srr/SRR579/003/SRR5799563,1e4599269478425a5934132b9a8a4be3,C57BL/6,GSE100739,Ribosome binding RNA from mouse macrophage cells,<NA>,<NA>,SRA583356,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,peritoneum,<NA>\nPRJNA399166,SRX3110787,Illumina HiSeq 2000 sequencing; GSM2747838: Ribosome Profiling H19:H391; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747838: Ribosome Profiling H19:H391; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525042,Ribosome Profiling H19:H391,Illumina HiSeq 2000,SRR5952328,202796598,10139829900,SAMN07525042,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747838,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/008/SRR5952328/SRR5952328.fastq.gz,7283170564,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/008/SRR5952328/SRR5952328.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/008/SRR5952328/SRR5952328.fastq.gz,cefde3da6da098bf1d70bf12fd318ba1,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747838_r1,<NA>,GSM2747838,<NA>,Ribosome Profiling H19:H391,<NA>,<NA>,<NA>,<NA>,SRS2445869,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/008/SRR5952328,6636238527,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/008/SRR5952328,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/008/SRR5952328,0834b1b9f2a767e821ac0099bdf3a214,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110788,Illumina HiSeq 2000 sequencing; GSM2747839: Ribosome Profiling SECIS1 deletion2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747839: Ribosome Profiling SECIS1 deletion2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525041,Ribosome Profiling SECIS1 deletion2,Illumina HiSeq 2000,SRR5952329,202925674,10146283700,SAMN07525041,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747839,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/009/SRR5952329/SRR5952329.fastq.gz,7084633046,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/009/SRR5952329/SRR5952329.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/009/SRR5952329/SRR5952329.fastq.gz,a6164754871efd114b64c972f508f623,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747839_r1,<NA>,GSM2747839,<NA>,Ribosome Profiling SECIS1 deletion2,<NA>,<NA>,<NA>,<NA>,SRS2445870,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/009/SRR5952329,6592084765,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/009/SRR5952329,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/009/SRR5952329,27ec78ddcb2a286d5ad7fe14c0981fc8,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110789,Illumina HiSeq 2000 sequencing; GSM2747840: Ribosome Profiling SECIS1 deletion3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747840: Ribosome Profiling SECIS1 deletion3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525040,Ribosome Profiling SECIS1 deletion3,Illumina HiSeq 2000,SRR5952330,196597095,9829854750,SAMN07525040,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747840,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/000/SRR5952330/SRR5952330.fastq.gz,6867172355,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/000/SRR5952330/SRR5952330.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/000/SRR5952330/SRR5952330.fastq.gz,37a557a63fd958b60dbf6f66ec4dd815,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747840_r1,<NA>,GSM2747840,<NA>,Ribosome Profiling SECIS1 deletion3,<NA>,<NA>,<NA>,<NA>,SRS2445872,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/000/SRR5952330,6379408570,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/000/SRR5952330,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/000/SRR5952330,a30c35339f16fdc65088ca3b109a1579,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110790,Illumina HiSeq 2000 sequencing; GSM2747841: Ribosome Profiling SECIS1 WT1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747841: Ribosome Profiling SECIS1 WT1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525039,Ribosome Profiling SECIS1 WT1,Illumina HiSeq 2000,SRR5952331,202636712,10131835600,SAMN07525039,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747841,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/001/SRR5952331/SRR5952331.fastq.gz,7368280040,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/001/SRR5952331/SRR5952331.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/001/SRR5952331/SRR5952331.fastq.gz,10958c7f794fdd343cc984c9df97bff8,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747841_r1,<NA>,GSM2747841,<NA>,Ribosome Profiling SECIS1 WT1,<NA>,<NA>,<NA>,<NA>,SRS2445871,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/001/SRR5952331,6666238713,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/001/SRR5952331,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/001/SRR5952331,a17c3d9b6b03f9131f8967801796512f,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110791,Illumina HiSeq 2000 sequencing; GSM2747842: Ribosome Profiling SECIS1 WT2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747842: Ribosome Profiling SECIS1 WT2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525038,Ribosome Profiling SECIS1 WT2,Illumina HiSeq 2000,SRR5952332,189180961,9459048050,SAMN07525038,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747842,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/002/SRR5952332/SRR5952332.fastq.gz,6521547385,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/002/SRR5952332/SRR5952332.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/002/SRR5952332/SRR5952332.fastq.gz,6fe24d5c873ff2c9c8bdfa957486c0ae,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747842_r1,<NA>,GSM2747842,<NA>,Ribosome Profiling SECIS1 WT2,<NA>,<NA>,<NA>,<NA>,SRS2445873,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/002/SRR5952332,6031582349,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/002/SRR5952332,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/002/SRR5952332,af7a7ee34a7daf1390e1272f2616feea,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110792,Illumina HiSeq 2000 sequencing; GSM2747843: Ribosome Profiling SECIS1 WT3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747843: Ribosome Profiling SECIS1 WT3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525037,Ribosome Profiling SECIS1 WT3,Illumina HiSeq 2000,SRR5952333,175785634,8789281700,SAMN07525037,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747843,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/003/SRR5952333/SRR5952333.fastq.gz,5777507290,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/003/SRR5952333/SRR5952333.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/003/SRR5952333/SRR5952333.fastq.gz,30f768c9f6fdd8fff6e2b8253ce790d5,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747843_r1,<NA>,GSM2747843,<NA>,Ribosome Profiling SECIS1 WT3,<NA>,<NA>,<NA>,<NA>,SRS2445874,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/003/SRR5952333,5569694828,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/003/SRR5952333,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/003/SRR5952333,012fcf9a09fd28132f825fd816ed5876,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110799,Illumina HiSeq 2000 sequencing; GSM2747850: Ribosome Profiling SECIS2 WT1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747850: Ribosome Profiling SECIS2 WT1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525028,Ribosome Profiling SECIS2 WT1,Illumina HiSeq 2000,SRR5952340,228456278,11422813900,SAMN07525028,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747850,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/000/SRR5952340/SRR5952340.fastq.gz,6271896637,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/000/SRR5952340/SRR5952340.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/000/SRR5952340/SRR5952340.fastq.gz,272550e6f369b08be28ccf497d4e556d,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747850_r1,<NA>,GSM2747850,<NA>,Ribosome Profiling SECIS2 WT1,<NA>,<NA>,<NA>,<NA>,SRS2445882,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/000/SRR5952340,5487171218,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/000/SRR5952340,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/000/SRR5952340,f42502a689ddad6342ea68cbd177b4f0,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110800,Illumina HiSeq 2000 sequencing; GSM2747851: Ribosome Profiling SECIS2 WT2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747851: Ribosome Profiling SECIS2 WT2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525032,Ribosome Profiling SECIS2 WT2,Illumina HiSeq 2000,SRR5952341,188204162,9410208100,SAMN07525032,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747851,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/001/SRR5952341/SRR5952341.fastq.gz,4749049771,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/001/SRR5952341/SRR5952341.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/001/SRR5952341/SRR5952341.fastq.gz,4f1d45b869e51f35255c1ce94771fedc,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747851_r1,<NA>,GSM2747851,<NA>,Ribosome Profiling SECIS2 WT2,<NA>,<NA>,<NA>,<NA>,SRS2445881,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/001/SRR5952341,4353390107,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/001/SRR5952341,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/001/SRR5952341,2309c417022fec31dfe6dda7d3db7bcc,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110801,Illumina HiSeq 2000 sequencing; GSM2747852: Ribosome Profiling SECIS2 WT3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747852: Ribosome Profiling SECIS2 WT3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525031,Ribosome Profiling SECIS2 WT3,Illumina HiSeq 2000,SRR5952342,203369022,10168451100,SAMN07525031,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747852,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/002/SRR5952342/SRR5952342.fastq.gz,5397566773,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/002/SRR5952342/SRR5952342.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/002/SRR5952342/SRR5952342.fastq.gz,b93d4e440a23b3bf23b7e082ff163d4d,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747852_r1,<NA>,GSM2747852,<NA>,Ribosome Profiling SECIS2 WT3,<NA>,<NA>,<NA>,<NA>,SRS2445883,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/002/SRR5952342,4650016651,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/002/SRR5952342,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/002/SRR5952342,3ada49d7577d3039fe3179c5e26fcc33,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110802,Illumina HiSeq 2000 sequencing; GSM2747853: Ribosome Profiling SECIS2 deletion1; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747853: Ribosome Profiling SECIS2 deletion1; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525030,Ribosome Profiling SECIS2 deletion1,Illumina HiSeq 2000,SRR5952343,202822349,10141117450,SAMN07525030,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747853,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/003/SRR5952343/SRR5952343.fastq.gz,5447569814,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/003/SRR5952343/SRR5952343.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/003/SRR5952343/SRR5952343.fastq.gz,e1eb0e4b1e237a66311d03a6331f1447,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747853_r1,<NA>,GSM2747853,<NA>,Ribosome Profiling SECIS2 deletion1,<NA>,<NA>,<NA>,<NA>,SRS2445884,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/003/SRR5952343,4579502517,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/003/SRR5952343,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/003/SRR5952343,5a81adf84ff9b9c63d1d8e3ef674b503,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110803,Illumina HiSeq 2000 sequencing; GSM2747854: Ribosome Profiling SECIS2 deletion2; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747854: Ribosome Profiling SECIS2 deletion2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525019,Ribosome Profiling SECIS2 deletion2,Illumina HiSeq 2000,SRR5952344,226331185,11316559250,SAMN07525019,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747854,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/004/SRR5952344/SRR5952344.fastq.gz,6297077994,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/004/SRR5952344/SRR5952344.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/004/SRR5952344/SRR5952344.fastq.gz,3a52c05b266c0186a2ebdc9a850df5ba,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747854_r1,<NA>,GSM2747854,<NA>,Ribosome Profiling SECIS2 deletion2,<NA>,<NA>,<NA>,<NA>,SRS2445885,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/004/SRR5952344,5310019014,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/004/SRR5952344,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/004/SRR5952344,30462afbebfa32e872d9d6b8205a48b0,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA399166,SRX3110804,Illumina HiSeq 2000 sequencing; GSM2747855: Ribosome Profiling SECIS2 deletion3; Mus musculus; OTHER,Illumina HiSeq 2000 sequencing; GSM2747855: Ribosome Profiling SECIS2 deletion3; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN07525027,Ribosome Profiling SECIS2 deletion3,Illumina HiSeq 2000,SRR5952345,197895247,9894762350,SAMN07525027,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2747855,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR595/005/SRR5952345/SRR5952345.fastq.gz,5230819396,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/005/SRR5952345/SRR5952345.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR595/005/SRR5952345/SRR5952345.fastq.gz,44e0cc4b0fd4928fa94d730373ab4d83,2017-11-09,2017-11-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2017-11-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2747855_r1,<NA>,GSM2747855,<NA>,Ribosome Profiling SECIS2 deletion3,<NA>,<NA>,<NA>,<NA>,SRS2445886,SRP115915,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR595/005/SRR5952345,4518127888,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/005/SRR5952345,ftp.sra.ebi.ac.uk/vol1/srr/SRR595/005/SRR5952345,3c8ec00209bc94098a5be34d80e4c56f,C57BL6,GSE102890,Multiple RNA structures affect translation initiation and UGA redefinition efficiency during synthesis of selenoprotein p,<NA>,<NA>,SRA601692,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,liver,<NA>\nPRJNA401857,SRX3157107,Illumina Genome Analyzer II sequencing; GSM2770989: Ribosome profiling at 37°C in WT cells_1; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770989: Ribosome profiling at 37°C in WT cells_1; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602624,Ribosome profiling at 37°C in WT cells_1,Illumina Genome Analyzer II,SRR6001737,20671753,614302032,SAMN07602624,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770989,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/007/SRR6001737/SRR6001737.fastq.gz,600683832,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/007/SRR6001737/SRR6001737.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/007/SRR6001737/SRR6001737.fastq.gz,621b0af316bce0524af9ac02a770649b,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770989_r1,<NA>,GSM2770989,<NA>,Ribosome profiling at 37°C in WT cells_1,<NA>,<NA>,<NA>,<NA>,SRS2488598,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/007/SRR6001737,478304404,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/007/SRR6001737,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/007/SRR6001737,20e0e25f567b158cbe316071787c8f2e,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,37.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157108,Illumina Genome Analyzer II sequencing; GSM2770990: Ribosome profiling 10 min after shift to 10°C in WT cells_1; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770990: Ribosome profiling 10 min after shift to 10°C in WT cells_1; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602623,Ribosome profiling 10 min after shift to 10°C in WT cells_1,Illumina Genome Analyzer II,SRR6001738,16625543,487122180,SAMN07602623,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770990,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/008/SRR6001738/SRR6001738.fastq.gz,462043643,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/008/SRR6001738/SRR6001738.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/008/SRR6001738/SRR6001738.fastq.gz,335d1d42ff113348d8f496fab96aeb46,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770990_r1,<NA>,GSM2770990,<NA>,Ribosome profiling 10 min after shift to 10°C in WT cells_1,<NA>,<NA>,<NA>,<NA>,SRS2488599,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/008/SRR6001738,379862210,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/008/SRR6001738,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/008/SRR6001738,e0bc787fa6fde9575e48b2d69a892a07,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157109,Illumina Genome Analyzer II sequencing; GSM2770991: Ribosome profiling 30 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770991: Ribosome profiling 30 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602622,Ribosome profiling 30 min after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001739,8816443,253931666,SAMN07602622,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770991,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/009/SRR6001739/SRR6001739.fastq.gz,244823047,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/009/SRR6001739/SRR6001739.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/009/SRR6001739/SRR6001739.fastq.gz,f5c11c9da360d792836b04e6c67ee2e8,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770991_r1,<NA>,GSM2770991,<NA>,Ribosome profiling 30 min after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488600,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/009/SRR6001739,205088398,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/009/SRR6001739,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/009/SRR6001739,a313f3c6577701036d46f35f2222ec43,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157110,Illumina Genome Analyzer II sequencing; GSM2770992: Ribosome profiling 2 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770992: Ribosome profiling 2 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602621,Ribosome profiling 2 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001740,7472980,210323047,SAMN07602621,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770992,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/000/SRR6001740/SRR6001740.fastq.gz,204580637,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/000/SRR6001740/SRR6001740.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/000/SRR6001740/SRR6001740.fastq.gz,c881f8703a8b51adc0a59828f99ff04e,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770992_r1,<NA>,GSM2770992,<NA>,Ribosome profiling 2 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488601,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/000/SRR6001740,169304021,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/000/SRR6001740,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/000/SRR6001740,f409a6c2b5b2c31455cb04396e242da3,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157111,Illumina Genome Analyzer II sequencing; GSM2770993: Ribosome profiling 3 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770993: Ribosome profiling 3 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602620,Ribosome profiling 3 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001741,16047781,463280196,SAMN07602620,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770993,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/001/SRR6001741/SRR6001741.fastq.gz,428739939,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/001/SRR6001741/SRR6001741.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/001/SRR6001741/SRR6001741.fastq.gz,d8e2eb73a632b8bc700550e89fdca92e,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770993_r1,<NA>,GSM2770993,<NA>,Ribosome profiling 3 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488602,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/001/SRR6001741,362094881,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/001/SRR6001741,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/001/SRR6001741,4a0a8f863b14338581c18576542af939,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157112,Illumina Genome Analyzer II sequencing; GSM2770994: Ribosome profiling 4 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770994: Ribosome profiling 4 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602619,Ribosome profiling 4 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001742,5968378,168325033,SAMN07602619,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770994,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/002/SRR6001742/SRR6001742.fastq.gz,164379066,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/002/SRR6001742/SRR6001742.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/002/SRR6001742/SRR6001742.fastq.gz,885835e47e87df242a95e4691690097f,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770994_r1,<NA>,GSM2770994,<NA>,Ribosome profiling 4 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488603,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/002/SRR6001742,135443979,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/002/SRR6001742,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/002/SRR6001742,00ba9b017476b6bae009c9f96ef19cd3,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157113,Illumina Genome Analyzer II sequencing; GSM2770995: Ribosome profiling 6 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina Genome Analyzer II sequencing; GSM2770995: Ribosome profiling 6 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602618,Ribosome profiling 6 hr after shift to 10°C in WT cells,Illumina Genome Analyzer II,SRR6001743,6838687,194508545,SAMN07602618,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770995,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/003/SRR6001743/SRR6001743.fastq.gz,196367701,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/003/SRR6001743/SRR6001743.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/003/SRR6001743/SRR6001743.fastq.gz,47435f8cd5273a93ea6d0eb905c05ccc,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770995_r1,<NA>,GSM2770995,<NA>,Ribosome profiling 6 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488604,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/003/SRR6001743,156971696,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/003/SRR6001743,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/003/SRR6001743,257929c040e546b5d0c06520ec41d697,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157114,Illumina HiSeq 2000 sequencing; GSM2770996: Ribosome profiling 5 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770996: Ribosome profiling 5 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602617,Ribosome profiling 5 min after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001744,38289935,1914496750,SAMN07602617,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770996,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/004/SRR6001744/SRR6001744.fastq.gz,1546928388,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/004/SRR6001744/SRR6001744.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/004/SRR6001744/SRR6001744.fastq.gz,1ca876ff26ffb3a1a8b5499093487c4b,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770996_r1,<NA>,GSM2770996,<NA>,Ribosome profiling 5 min after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488605,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/004/SRR6001744,1313696264,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/004/SRR6001744,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/004/SRR6001744,8ec602ab51d3112ecb92b7b161876f1d,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157115,Illumina HiSeq 2000 sequencing; GSM2770997: Ribosome profiling 10 min after shift to 10°C in WT cells_2; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770997: Ribosome profiling 10 min after shift to 10°C in WT cells_2; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602616,Ribosome profiling 10 min after shift to 10°C in WT cells_2,Illumina HiSeq 2000,SRR6001745,11745422,587271100,SAMN07602616,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770997,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/005/SRR6001745/SRR6001745.fastq.gz,507051861,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/005/SRR6001745/SRR6001745.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/005/SRR6001745/SRR6001745.fastq.gz,3c878e39cc2acdb46b10be29d290d824,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770997_r1,<NA>,GSM2770997,<NA>,Ribosome profiling 10 min after shift to 10°C in WT cells_2,<NA>,<NA>,<NA>,<NA>,SRS2488606,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/005/SRR6001745,417505001,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/005/SRR6001745,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/005/SRR6001745,e745ed23ca89dc62ec6498a45a68e75d,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157116,Illumina HiSeq 2000 sequencing; GSM2770998: Ribosome profiling 15 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770998: Ribosome profiling 15 min after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602615,Ribosome profiling 15 min after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001746,16428973,821448650,SAMN07602615,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770998,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/006/SRR6001746/SRR6001746.fastq.gz,687861621,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/006/SRR6001746/SRR6001746.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/006/SRR6001746/SRR6001746.fastq.gz,f70ec6de9199830e65cb88bb8642b151,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770998_r1,<NA>,GSM2770998,<NA>,Ribosome profiling 15 min after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488607,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/006/SRR6001746,583807662,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/006/SRR6001746,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/006/SRR6001746,f03a59dcb162ad1f23d30e282a413137,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157117,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602614,Ribosome profiling 8 hr after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001747,11769741,600256791,SAMN07602614,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770999,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/007/SRR6001747/SRR6001747.fastq.gz,480622909,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/007/SRR6001747/SRR6001747.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/007/SRR6001747/SRR6001747.fastq.gz,d7d96165d29b83bb6133e0436fcb31c3,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770999_r1,<NA>,GSM2770999,<NA>,Ribosome profiling 8 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488608,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/007/SRR6001747,428628504,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/007/SRR6001747,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/007/SRR6001747,eff13a3a4e1e2676da8a97f7f8dc9e8e,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157117,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2770999: Ribosome profiling 8 hr after shift to 10°C in WT cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602614,Ribosome profiling 8 hr after shift to 10°C in WT cells,Illumina HiSeq 2000,SRR6001748,11622124,592728324,SAMN07602614,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2770999,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/008/SRR6001748/SRR6001748.fastq.gz,440343038,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/008/SRR6001748/SRR6001748.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/008/SRR6001748/SRR6001748.fastq.gz,fc64cf1719c2c83407d93560a40957b1,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2770999_r2,<NA>,GSM2770999,<NA>,Ribosome profiling 8 hr after shift to 10°C in WT cells,<NA>,<NA>,<NA>,<NA>,SRS2488608,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/008/SRR6001748,396662824,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/008/SRR6001748,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/008/SRR6001748,15a40408b47b5da11b831cb2cbfffbb7,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157118,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602613,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,Illumina HiSeq 2000,SRR6001749,12537556,639415356,SAMN07602613,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2771000,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/009/SRR6001749/SRR6001749.fastq.gz,516251150,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/009/SRR6001749/SRR6001749.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/009/SRR6001749/SRR6001749.fastq.gz,b603d8edea58568b26ca39aa77a06fe3,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2771000_r1,<NA>,GSM2771000,<NA>,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,<NA>,<NA>,<NA>,<NA>,SRS2488610,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/009/SRR6001749,457233107,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/009/SRR6001749,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/009/SRR6001749,85e72e0c1659ec74aa12bab12e3933b7,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157118,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771000: Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602613,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,Illumina HiSeq 2000,SRR6001750,12383731,631570281,SAMN07602613,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2771000,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/000/SRR6001750/SRR6001750.fastq.gz,467363752,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/000/SRR6001750/SRR6001750.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/000/SRR6001750/SRR6001750.fastq.gz,241779465d9a5a993dfc22428c9ee1df,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2771000_r2,<NA>,GSM2771000,<NA>,Ribosome profiling 8 hr after shift to 10°C in ∆cspABEG cells,<NA>,<NA>,<NA>,<NA>,SRS2488610,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/000/SRR6001750,418521537,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/000/SRR6001750,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/000/SRR6001750,8b0dfa96116e8e6bca6699e28dc2541d,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,10.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157119,Illumina HiSeq 2000 sequencing; GSM2771001: Ribosome profiling at 37°C in WT cells_2; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771001: Ribosome profiling at 37°C in WT cells_2; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602612,Ribosome profiling at 37°C in WT cells_2,Illumina HiSeq 2000,SRR6001751,61258516,3124184316,SAMN07602612,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2771001,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/001/SRR6001751/SRR6001751.fastq.gz,2470633554,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/001/SRR6001751/SRR6001751.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/001/SRR6001751/SRR6001751.fastq.gz,a60b30605af964d564609716b0a9c895,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2771001_r1,<NA>,GSM2771001,<NA>,Ribosome profiling at 37°C in WT cells_2,<NA>,<NA>,<NA>,<NA>,SRS2488609,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/001/SRR6001751,2064958495,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/001/SRR6001751,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/001/SRR6001751,a739266108e6bbc7b428eb1dba79fefd,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,37.0,<NA>,<NA>,<NA>\nPRJNA401857,SRX3157120,Illumina HiSeq 2000 sequencing; GSM2771002: Ribosome profiling at 37°C in ∆cspABCEG cells; Escherichia coli; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM2771002: Ribosome profiling at 37°C in ∆cspABCEG cells; Escherichia coli; RNA-Seq,562,Escherichia coli,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN07602611,Ribosome profiling at 37°C in ∆cspABCEG cells,Illumina HiSeq 2000,SRR6001752,59003587,3009182937,SAMN07602611,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2771002,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR600/002/SRR6001752/SRR6001752.fastq.gz,2352736870,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/002/SRR6001752/SRR6001752.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR600/002/SRR6001752/SRR6001752.fastq.gz,46aa4b37edcd91dc6d043834b16b55a6,2018-04-24,2018-04-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-04-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2771002_r1,<NA>,GSM2771002,<NA>,Ribosome profiling at 37°C in ∆cspABCEG cells,<NA>,<NA>,<NA>,<NA>,SRS2488611,SRP117035,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR600/002/SRR6001752,1991075823,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/002/SRR6001752,ftp.sra.ebi.ac.uk/vol1/srr/SRR600/002/SRR6001752,627132fd58f09c78291bf8da29901072,<NA>,GSE103421,A stress response that monitors and regulates mRNA structure is central to cold-shock adaptation,<NA>,<NA>,SRA605192,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,37.0,<NA>,<NA>,<NA>\nPRJNA171327,SRX172315,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093931,\"Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #1\",Illumina HiSeq 2000,SRR618770,9742062,467618976,SAMN01093931,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_CHX_Rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618770/SRR618770.fastq.gz,391236032,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618770/SRR618770.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618770/SRR618770.fastq.gz,cf8dea7953b14511e7cc47776fb6c55d,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,HEK293_CHX_Rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_CHX_Rep1,<NA>,HEK293_CHX_Rep1,<NA>,\"Ribosome profiling reads from HEK293 cells treated with 100 μM cycloheximide for 30 min, technical replicate #1.\",<NA>,<NA>,<NA>,<NA>,SRS351805,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618770,334062448,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618770,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618770,6484a83bd165c2ee75332e942c4017e9,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA171327,SRX172361,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093932,\"Ribosome profiling of HEK293 cells treated with cycloheximide, technical replicate #2\",Illumina HiSeq 2000,SRR618771,44827310,2151710880,SAMN01093932,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_CHX_Rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618771/SRR618771.fastq.gz,1604419425,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618771/SRR618771.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618771/SRR618771.fastq.gz,23881146dcd14cc8a87427012970e85e,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,HEK293_CHX_Rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_CHX_Rep2,<NA>,HEK293_CHX_Rep2,<NA>,\"Ribosome profiling reads from HEK293 cells treated with 100 μM cycloheximide for 30 min, technical replicate #2.\",<NA>,<NA>,<NA>,<NA>,SRS351806,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618771,1407611585,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618771,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618771,6f8f96ee421ad2b4bf5d73084eaa73ce,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA171327,SRX172360,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093933,\"Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #1\",Illumina HiSeq 2000,SRR618772,15628782,750181536,SAMN01093933,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_LTM_Rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618772/SRR618772.fastq.gz,598139843,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618772/SRR618772.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618772/SRR618772.fastq.gz,c3f09fb5dfb3c203df34cb92d83fe62e,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,HEK293_LTM_Rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_LTM_Rep1,<NA>,HEK293_LTM_Rep1,<NA>,\"Ribosome profiling reads from HEK293 cells treated with 50 μM lactimidomycin for 30 min, technical replicate #1.\",<NA>,<NA>,<NA>,<NA>,SRS351807,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618772,515451684,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618772,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618772,3a43ea00b3e7c9ede32c070ae66e08d2,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA171327,SRX172392,\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",\"Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01093934,\"Ribosome profiling of HEK293 cells treated with lactimidomycin, technical replicate #2\",Illumina HiSeq 2000,SRR618773,28457106,1365941088,SAMN01093934,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_LTM_Rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618773/SRR618773.fastq.gz,997314708,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618773/SRR618773.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618773/SRR618773.fastq.gz,462d83a06ef643a2b7057495522a7572,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,HEK293_LTM_Rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_LTM_Rep2,<NA>,HEK293_LTM_Rep2,<NA>,\"Ribosome profiling reads from HEK293 cells treated with 50 μM lactimidomycin for 30 min, technical replicate #2.\",<NA>,<NA>,<NA>,<NA>,SRS351808,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618773,892080678,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618773,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618773,bf1f6b42dd31d858526add9003c117fa,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA171327,SRX172393,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with cycloheximide,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with cycloheximide,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01094235,Ribosome profiling of MEF cells treated with cycloheximide,Illumina HiSeq 2000,SRR618774,25957180,1245944640,SAMN01094235,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MEF_CHX,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618774/SRR618774.fastq.gz,983676970,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618774/SRR618774.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618774/SRR618774.fastq.gz,51ba731ecd68564ec937152e9a4c826e,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MEF_CHX,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF_CHX,<NA>,MEF_CHX,<NA>,Ribosome profiling reads from mouse embryonic fibroblasts treated with 100 μM cycloheximide for 30 min.,<NA>,<NA>,<NA>,<NA>,SRS351809,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618774,803543933,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618774,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618774,c1f012640b0e9a7d1004b73fea8e4c05,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA171327,SRX172394,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with lactimidomycin,Illumina HiSeq 2000 sequencing; Ribosome profiling of MEF cells treated with lactimidomycin,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01094236,Ribosome profiling of MEF cells treated with lactimidomycin,Illumina HiSeq 2000,SRR618775,43068755,2067300240,SAMN01094236,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,MEF_LTM,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR618/SRR618775/SRR618775.fastq.gz,1585957554,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618775/SRR618775.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR618/SRR618775/SRR618775.fastq.gz,0dc0302cb31eaca671ceadce53732675,2013-11-11,2012-12-04,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,MEF_LTM,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MEF_LTM,<NA>,MEF_LTM,<NA>,Ribosome profiling reads from mouse embryonic fibroblasts treated with 50 μM lactimidomycin for 30 min.,<NA>,<NA>,<NA>,<NA>,SRS351810,SRP014629,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR618/SRR618775,1318274553,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618775,ftp.sra.ebi.ac.uk/vol1/srr/SRR618/SRR618775,208bdb1a59602b2948d25b6ca8ad81fb,<NA>,PRJNA171327,Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution,<NA>,<NA>,SRA056377,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205658,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 1,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816428,HEK293_CON_Rep1,Illumina Genome Analyzer II,SRR619082,10167363,416861883,SAMN01816428,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_CON_Rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619082/SRR619082.fastq.gz,355581196,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619082/SRR619082.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619082/SRR619082.fastq.gz,4d094427f9cf757cd9417edb9e4e4e1a,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_CON_Rep1,<NA>,HEK293_CON_Rep1,<NA>,Ribosome profiling of HEK293 cells no treatment control biological replicate 1,<NA>,<NA>,<NA>,<NA>,SRS376432,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619082,275486813,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619082,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619082,fb020bfc9f1a18223ae96aa7a3617339,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205661,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells no treatment control biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816429,HEK293_CON_Rep2,Illumina HiSeq 2000,SRR619083,48902334,2347312032,SAMN01816429,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_CON_Rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619083/SRR619083.fastq.gz,1631565510,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619083/SRR619083.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619083/SRR619083.fastq.gz,5840b958be6dff58116897aa45ded3d3,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_CON_Rep2,<NA>,HEK293_CON_Rep2,<NA>,Ribosome profiling of HEK293 cells no treatment control biological replicate 2,<NA>,<NA>,<NA>,<NA>,SRS376435,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619083,1448402669,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619083,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619083,1c7a15365cbe3ae19d80f0f8e61c4b75,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205662,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816430,HEK293_AZC+MG132_Rep1,Illumina Genome Analyzer II,SRR619084,10921343,447775063,SAMN01816430,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_AZC MG132_Rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619084/SRR619084.fastq.gz,354056853,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619084/SRR619084.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619084/SRR619084.fastq.gz,a10482f0ecd2cf9e6b0e1aacb1d9e5b0,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,EK293_AZC MG132_Rep1,<NA>,HEK293_AZC+MG132_Rep1,<NA>,Ribosome profiling of HEK293 cells treated with 10 millimolar AZC and 20 micromolar MG132 for 1 hour biological replicate 1,<NA>,<NA>,<NA>,<NA>,SRS376436,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619084,278746920,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619084,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619084,51883e0abcc308b65ccc4d1e5fa42a67,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205663,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with AZC and MG132 biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816431,HEK293_AZC+MG132_Rep2,Illumina HiSeq 2000,SRR619085,42857031,2057137488,SAMN01816431,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_AZC MG132_Rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619085/SRR619085.fastq.gz,1397813876,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619085/SRR619085.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619085/SRR619085.fastq.gz,cd99100d870682283cb225979ab93b42,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_AZC MG132_Rep2,<NA>,HEK293_AZC+MG132_Rep2,<NA>,Ribosome profiling of HEK293 cells treated with 10 millimolar AZC and 20 micromolar MG132 for 1 hour biological replicate 2,<NA>,<NA>,<NA>,<NA>,SRS376437,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619085,1275824781,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619085,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619085,0c1013b564118621c221e5934c4b40d7,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205664,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC only,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with AZC only,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816432,HEK293_AZC,Illumina Genome Analyzer II,SRR619086,5553281,227684521,SAMN01816432,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_AZC,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619086/SRR619086.fastq.gz,181580008,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619086/SRR619086.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619086/SRR619086.fastq.gz,ac898f79e806e830570576b42afb664d,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_AZC,<NA>,HEK293_AZC,<NA>,Ribosome profiling of HEK293 cells treated with 10 millimolar AZC alone for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376438,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619086,141390438,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619086,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619086,665b357e0fab7e2a465b2b95908e2107,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205665,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with MG132 only,Illumina Genome Analyzer II sequencing; Ribosome profiling of HEK293 cells treated with MG132 only,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816433,HEK293_MG132,Illumina Genome Analyzer II,SRR619087,10922721,447831561,SAMN01816433,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_MG132,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619087/SRR619087.fastq.gz,343080445,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619087/SRR619087.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619087/SRR619087.fastq.gz,81c9078c23d75681880dfd6dcd297964,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_MG132,<NA>,HEK293_MG132,<NA>,Ribosome profiling of HEK293 cells treated with 20 micromolar MG132 alone for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376439,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619087,274586809,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619087,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619087,26533690b87a26f32a746ce297f27f5e,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205666,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816434,HEK293_DMSO,Illumina HiSeq 2000,SRR619088,10086263,484140624,SAMN01816434,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_DMSO,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619088/SRR619088.fastq.gz,320190787,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619088/SRR619088.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619088/SRR619088.fastq.gz,e810f67ddbcd23e47747b5616ad555ff,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_DMSO_R1,<NA>,HEK293_DMSO,<NA>,Ribosome profiling of HEK293 cells treated with DMSO for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376440,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619088,282858493,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619088,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619088,9df7d5e135dbe9d0fa9c68092fe9095a,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205666,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with DMSO,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816434,HEK293_DMSO,Illumina HiSeq 2000,SRR619089,4286560,205754880,SAMN01816434,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_DMSO,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619089/SRR619089.fastq.gz,150476930,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619089/SRR619089.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619089/SRR619089.fastq.gz,720476fa4a15baa990ecfef744bc9586,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_DMSO_R2,<NA>,HEK293_DMSO,<NA>,Ribosome profiling of HEK293 cells treated with DMSO for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376440,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619089,128468209,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619089,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619089,ec0007b0bb5ba3610d98bc6f801c7d07,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205667,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816435,HEK293_VER,Illumina HiSeq 2000,SRR619090,8919827,428151696,SAMN01816435,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_VER,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619090/SRR619090.fastq.gz,273904058,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619090/SRR619090.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619090/SRR619090.fastq.gz,8ca83c9cc802ba5addea809d88b37c3e,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_VER_R1,<NA>,HEK293_VER,<NA>,Ribosome profiling of HEK293 cells treated with 100 micromolar VER155008 for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376441,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619090,246911505,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619090,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619090,8654bdca5acd659421dbd6fe745e1644,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205667,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with VER,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816435,HEK293_VER,Illumina HiSeq 2000,SRR619091,3924183,188360784,SAMN01816435,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_VER,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619091/SRR619091.fastq.gz,135819886,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619091/SRR619091.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619091/SRR619091.fastq.gz,795d4c583e19b7d8e50c32219ffa5cd5,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_VER_R2,<NA>,HEK293_VER,<NA>,Ribosome profiling of HEK293 cells treated with 100 micromolar VER155008 for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376441,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619091,117622053,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619091,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619091,4b84de513c9503ea337e706a909e6323,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205668,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816436,HEK293_PES,Illumina HiSeq 2000,SRR619092,8469084,406516032,SAMN01816436,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_PES,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619092/SRR619092.fastq.gz,255796242,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619092/SRR619092.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619092/SRR619092.fastq.gz,75fd1bdb7c745e00af73b7827a06e1e9,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_PES_R1,<NA>,HEK293_PES,<NA>,Ribosome profiling of HEK293 cells treated with 50 micromolar 2-phenylethynesulfonamide for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376442,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619092,231394329,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619092,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619092,8aa10810c53baea68baf4686b2dfda36,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205668,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with PES,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816436,HEK293_PES,Illumina HiSeq 2000,SRR619093,3737571,179403408,SAMN01816436,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_PES,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619093/SRR619093.fastq.gz,128065875,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619093/SRR619093.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619093/SRR619093.fastq.gz,a92662c475c9d94c8baeb783a3f3f833,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_PES_R2,<NA>,HEK293_PES,<NA>,Ribosome profiling of HEK293 cells treated with 50 micromolar 2-phenylethynesulfonamide for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376442,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619093,110391085,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619093,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619093,3b86436f9b6edab596119f70fb667dad,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205669,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816437,HEK293_GA,Illumina HiSeq 2000,SRR619094,9294787,446149776,SAMN01816437,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_GA,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619094/SRR619094.fastq.gz,286114760,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619094/SRR619094.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619094/SRR619094.fastq.gz,fcec7928c44295f8da33592e77ea479b,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_GA_R1,<NA>,HEK293_GA,<NA>,Ribosome profiling of HEK293 cells treated with 1 micromolar geldanamycin for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376443,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619094,253187569,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619094,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619094,d20f4853d1dd42eef7e31bd98423ef68,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205669,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,Illumina HiSeq 2000 sequencing; Ribosome profiling of HEK293 cells treated with GA,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816437,HEK293_GA,Illumina HiSeq 2000,SRR619095,4044711,194146128,SAMN01816437,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,HEK293_GA,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619095/SRR619095.fastq.gz,140418673,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619095/SRR619095.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619095/SRR619095.fastq.gz,5b1c1e07dfd6a9fe16e74f09924dd481,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HEK293_GA_R2,<NA>,HEK293_GA,<NA>,Ribosome profiling of HEK293 cells treated with 1 micromolar geldanamycin for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376443,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619095,120052169,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619095,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619095,601b52416144b4fd2aa4ab298eb70b22,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205670,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells no treatment,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells no treatment,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816438,FRB-FKBP-Rapalog,Illumina Genome Analyzer II,SRR619096,19318730,1062530150,SAMN01816438,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,FRB-FKBP-Rapalog,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619096/SRR619096.fastq.gz,801809320,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619096/SRR619096.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619096/SRR619096.fastq.gz,b7b3d27055fdbcaee7d6d3bc957fd53c,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,FRB-FKBP-Rapalog,<NA>,FRB-FKBP-Rapalog,<NA>,Ribosome profiling of FRB*-GFP HEK293 cells transfected with the plasmid encoding FKBP no treatment,<NA>,<NA>,<NA>,<NA>,SRS376444,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619096,720677026,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619096,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619096,6f552ebe9db11d7973e345028b8a971b,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205671,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog,Illumina Genome Analyzer II sequencing; Ribosome profiling of FRB*-GFP HEK293 cells treated with rapalog,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816439,FRB-FKBP+Rapalog,Illumina Genome Analyzer II,SRR619097,24771678,1362442290,SAMN01816439,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,human embryonic kidney 293,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,FRB-FKBP Rapalog,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619097/SRR619097.fastq.gz,1027391168,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619097/SRR619097.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619097/SRR619097.fastq.gz,a6ca4a283943555788eab3b74f63fb90,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,FRB-FKBP Rapalog,<NA>,FRB-FKBP+Rapalog,<NA>,Ribosome profiling of FRB*-GFP HEK293 cells transfected with the plasmid encoding FKBP and treated with 1 micromolar rapalog  for 1 hour,<NA>,<NA>,<NA>,<NA>,SRS376445,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619097,892635591,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619097,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619097,65e8e476c67b22be9720e6625aab97f2,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205672,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells NOT expressing K71M,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells NOT expressing K71M,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816440,Hela_K71M+Dox,Illumina HiSeq 2000,SRR619098,24593755,1180500240,SAMN01816440,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa-tTA,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Hela_K71M Dox,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619098/SRR619098.fastq.gz,1033092170,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619098/SRR619098.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619098/SRR619098.fastq.gz,b28036ee36013bb07babd526371fbcec,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Hela_K71M Dox,<NA>,Hela_K71M+Dox,<NA>,Ribosome profiling of HeLa-tTA cells infected with adenoviruses expressing Hsc70(K71M) for 12 hour in the presence of 1 microgram per milliliter doxycycline,<NA>,<NA>,<NA>,<NA>,SRS376446,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619098,835072521,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619098,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619098,5a708ddaec529d0e9c472b9a9da6eedb,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205673,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 1,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816441,Hela_K71M-Dox_Rep1,Illumina HiSeq 2000,SRR619099,22424972,1076398656,SAMN01816441,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa-tTA,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Hela_K71M-Dox_Rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619099/SRR619099.fastq.gz,950573956,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619099/SRR619099.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619099/SRR619099.fastq.gz,c07448060f62c18854745a56c7afd3e1,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2016-06-28,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Hela_K71M-Dox_Rep1,<NA>,Hela_K71M-Dox_Rep1,<NA>,Ribosome profiling of HeLa-tTA cells infected with adenoviruses expressing Hsc70(K71M) for 12 hour in the absence of doxycycline  biological replicate 1,<NA>,<NA>,<NA>,<NA>,SRS376447,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619099,771621610,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619099,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619099,3b943920c8edab448c6b4b46da4a15d3,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA181016,SRX205675,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2,Illumina HiSeq 2000 sequencing; Ribosome profiling of HeLa-tTA cells expressing K71M biological replicate 2,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,size fractionation,SAMN01816442,Hela_K71M-Dox_Rep2,Illumina HiSeq 2000,SRR619100,46612873,2237417904,SAMN01816442,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa-tTA,<NA>,Cornell University,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Hela_K71M-Dox_Rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR619/SRR619100/SRR619100.fastq.gz,1501984549,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619100/SRR619100.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR619/SRR619100/SRR619100.fastq.gz,1546be40db2eafcc0929fea92e892b3c,2013-11-11,2013-01-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2015-06-19,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Hela_K71M-Dox_Rep2,<NA>,Hela_K71M-Dox_Rep2,<NA>,Ribosome profiling of HeLa-tTA cells infected with adenoviruses expressing Hsc70(K71M) for 12 hour in the absence of doxycycline  biological replicate 2,<NA>,<NA>,<NA>,<NA>,SRS376449,SRP017263,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR619/SRR619100,1369540005,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619100,ftp.sra.ebi.ac.uk/vol1/srr/SRR619/SRR619100,c10166a947fb28ae564b4ed06658c330,<NA>,PRJNA181016,Co-Translational Response to Proteotoxic Stress by Elongation Pausing of Ribosomes,<NA>,<NA>,SRA061778,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA417011,SRX3358946,NextSeq 500 sequencing; GSM2838830: Dengue 1 ribosome profiling mRNA REP1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838830: Dengue 1 ribosome profiling mRNA REP1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974487,Dengue 1 ribosome profiling mRNA REP1,NextSeq 500,SRR6252013,127084864,9531364800,SAMN07974487,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2838830,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR625/003/SRR6252013/SRR6252013.fastq.gz,4011921334,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/003/SRR6252013/SRR6252013.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/003/SRR6252013/SRR6252013.fastq.gz,74c04255d7203cafc0c34324113fd5cb,2019-03-01,2019-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2838830_r1,<NA>,GSM2838830,<NA>,Dengue 1 ribosome profiling mRNA REP1,<NA>,<NA>,<NA>,<NA>,SRS2657902,SRP123568,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR625/003/SRR6252013,3772310226,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/003/SRR6252013,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/003/SRR6252013,47f1cb7e0239599d17050172f9906577,<NA>,GSE106483,Genome organization of dengue and Zika viruses,<NA>,<NA>,SRA628009,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA417011,SRX3358947,NextSeq 500 sequencing; GSM2838831: Dengue 1 ribosome profiling footprint REP1; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838831: Dengue 1 ribosome profiling footprint REP1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974486,Dengue 1 ribosome profiling footprint REP1,NextSeq 500,SRR6252014,127716843,9578763225,SAMN07974486,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2838831,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR625/004/SRR6252014/SRR6252014.fastq.gz,3692471484,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/004/SRR6252014/SRR6252014.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/004/SRR6252014/SRR6252014.fastq.gz,996396a6bbd78a83175196ef8b7ed1fe,2019-03-01,2019-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2838831_r1,<NA>,GSM2838831,<NA>,Dengue 1 ribosome profiling footprint REP1,<NA>,<NA>,<NA>,<NA>,SRS2657905,SRP123568,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR625/004/SRR6252014,3800285656,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/004/SRR6252014,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/004/SRR6252014,5592f681d39aab239356fb33248fb1b1,<NA>,GSE106483,Genome organization of dengue and Zika viruses,<NA>,<NA>,SRA628009,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA417011,SRX3358948,NextSeq 500 sequencing; GSM2838832: Dengue 1 ribosome profiling mRNA REP2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838832: Dengue 1 ribosome profiling mRNA REP2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974437,Dengue 1 ribosome profiling mRNA REP2,NextSeq 500,SRR6252015,115517289,8663796675,SAMN07974437,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2838832,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR625/005/SRR6252015/SRR6252015.fastq.gz,4047093499,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/005/SRR6252015/SRR6252015.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/005/SRR6252015/SRR6252015.fastq.gz,4eec77c75277c23c465e709c839cc64f,2019-03-01,2019-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2838832_r1,<NA>,GSM2838832,<NA>,Dengue 1 ribosome profiling mRNA REP2,<NA>,<NA>,<NA>,<NA>,SRS2657903,SRP123568,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR625/005/SRR6252015,3502650368,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/005/SRR6252015,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/005/SRR6252015,a69d2ee31d93498deb880f0eeb0b01ab,<NA>,GSE106483,Genome organization of dengue and Zika viruses,<NA>,<NA>,SRA628009,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA417011,SRX3358949,NextSeq 500 sequencing; GSM2838833: Dengue 1 ribosome profiling footprint REP2; Homo sapiens; OTHER,NextSeq 500 sequencing; GSM2838833: Dengue 1 ribosome profiling footprint REP2; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN07974489,Dengue 1 ribosome profiling footprint REP2,NextSeq 500,SRR6252016,128141714,9610628550,SAMN07974489,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Huh7 cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2838833,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR625/006/SRR6252016/SRR6252016.fastq.gz,3633645352,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/006/SRR6252016/SRR6252016.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR625/006/SRR6252016/SRR6252016.fastq.gz,f431cc8a9c31cf63410499984399e0a8,2019-03-01,2019-03-01,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-01,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2838833_r1,<NA>,GSM2838833,<NA>,Dengue 1 ribosome profiling footprint REP2,<NA>,<NA>,<NA>,<NA>,SRS2657904,SRP123568,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR625/006/SRR6252016,3811755394,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/006/SRR6252016,ftp.sra.ebi.ac.uk/vol1/srr/SRR625/006/SRR6252016,78b49c6238501b5f8f98e6b4ae0f5520,<NA>,GSE106483,Genome organization of dengue and Zika viruses,<NA>,<NA>,SRA628009,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388077,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022097,Ribo_HF_rep2,Illumina HiSeq 4000,SRR6286686,31815773,3181577300,SAMN08022097,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_HF_rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/006/SRR6286686/SRR6286686.fastq.gz,1270414280,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/006/SRR6286686/SRR6286686.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/006/SRR6286686/SRR6286686.fastq.gz,714438ead93e8c35d0c7d09c505c9b66,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_HF_rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_HF_rep2.fastq.gz,<NA>,Ribo_HF_rep2,<NA>,Ribo_HF_rep2,<NA>,<NA>,<NA>,<NA>,SRS2683409,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/006/SRR6286686,1487166943,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/006/SRR6286686,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/006/SRR6286686,df96431cc721a42a4f34ffefb98c8854,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388076,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022096,Ribo_HF_rep1,Illumina HiSeq 4000,SRR6286687,31226831,3122683100,SAMN08022096,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_HF_rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/007/SRR6286687/SRR6286687.fastq.gz,1226590288,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/007/SRR6286687/SRR6286687.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/007/SRR6286687/SRR6286687.fastq.gz,ecad61dc44dc333c6553e539e71eff3c,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_HF_rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_HF_rep1.fastq.gz,<NA>,Ribo_HF_rep1,<NA>,Ribo_HF_rep1,<NA>,<NA>,<NA>,<NA>,SRS2683410,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/007/SRR6286687,1452425337,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/007/SRR6286687,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/007/SRR6286687,dc6ceda9c969435933c42e984233fc25,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388073,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022093,Ribo_CO_rep2,Illumina HiSeq 4000,SRR6286690,95785654,2709048603,SAMN08022093,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_CO_rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/000/SRR6286690/SRR6286690.fastq.gz,1299621548,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/000/SRR6286690/SRR6286690.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/000/SRR6286690/SRR6286690.fastq.gz,ddaab7f8eba839e948f53a087b7e0f7f,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_CO_rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_CO_rep2.fastq.gz,<NA>,Ribo_CO_rep2,<NA>,Ribo_CO_rep2,<NA>,<NA>,<NA>,<NA>,SRS2683407,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/000/SRR6286690,1286157190,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/000/SRR6286690,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/000/SRR6286690,cf5fc8bbe7b68f9cc48af667e0cee691,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388072,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022092,Ribo_CO_rep1,Illumina HiSeq 4000,SRR6286691,74932501,2100103575,SAMN08022092,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_CO_rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/001/SRR6286691/SRR6286691.fastq.gz,1018174917,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/001/SRR6286691/SRR6286691.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/001/SRR6286691/SRR6286691.fastq.gz,174cd0fd34de022668f59b5e5da071f4,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_CO_rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_CO_rep1.fastq.gz,<NA>,Ribo_CO_rep1,<NA>,Ribo_CO_rep1,<NA>,<NA>,<NA>,<NA>,SRS2683405,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/001/SRR6286691,1014125708,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/001/SRR6286691,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/001/SRR6286691,e4e3f2b7ee0cb13ac1e19c61212959f6,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388071,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022095,Ribo_H2CO2_rep2,Illumina HiSeq 4000,SRR6286692,44431801,4443180100,SAMN08022095,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_H2CO2_rep2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/002/SRR6286692/SRR6286692.fastq.gz,1520562821,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/002/SRR6286692/SRR6286692.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/002/SRR6286692/SRR6286692.fastq.gz,be9c00f6c3bdbca95fa1b9f9542bb123,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_H2CO2_rep2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_H2CO2_rep2.fq.gz,<NA>,Ribo_H2CO2_rep2,<NA>,Ribo_H2CO2_rep2,<NA>,<NA>,<NA>,<NA>,SRS2683404,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/002/SRR6286692,1864884834,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/002/SRR6286692,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/002/SRR6286692,0322a0f5c49dcba34d70aec1d837b043,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418190,SRX3388070,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,Illumina HiSeq 4000 sequencing; Ribosome profiling of Clostridium ljungdahlii,1538,Clostridium ljungdahlii,OTHER,TRANSCRIPTOMIC,other,SAMN08022094,Ribo_H2CO2_rep1,Illumina HiSeq 4000,SRR6286693,50618624,5061862400,SAMN08022094,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3200129,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Ribo_H2CO2_rep1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR628/003/SRR6286693/SRR6286693.fastq.gz,1675004695,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/003/SRR6286693/SRR6286693.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR628/003/SRR6286693/SRR6286693.fastq.gz,f05cd7b9c416a2aa06ead52107f7d3be,2018-10-15,2018-10-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-10-15,<NA>,PAIRED,Ribo_H2CO2_rep1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Ribo_H2CO2_rep1.fq.gz,<NA>,Ribo_H2CO2_rep1,<NA>,Ribo_H2CO2_rep1,<NA>,<NA>,<NA>,<NA>,SRS2683403,SRP124901,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR628/003/SRR6286693,2085951986,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/003/SRR6286693,ftp.sra.ebi.ac.uk/vol1/srr/SRR628/003/SRR6286693,a1b91dcbdeb6746400b1d081f739d0cc,ATCC 55383,PRJNA418190,Multi-omic analyses of Clostridium ljungdahlii in heterotrophic and autotrophic growth conditions,<NA>,<NA>,SRA630323,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA418997,SRX3415715,Illumina HiSeq 2000 sequencing; Hip1 total hippocampus Ribosome profiling,Illumina HiSeq 2000 sequencing; Hip1 total hippocampus Ribosome profiling,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08040363,Hip1 total hippocampus Ribosome profiling,Illumina HiSeq 2000,SRR6315847,6628200,180389814,SAMN08040363,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB3229482,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,Hip1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR631/007/SRR6315847/SRR6315847.fastq.gz,119842527,ftp.sra.ebi.ac.uk/vol1/fastq/SRR631/007/SRR6315847/SRR6315847.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR631/007/SRR6315847/SRR6315847.fastq.gz,a03505afc5b85a911e48d971a0d17416,2019-01-02,2019-01-02,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-01-02,<NA>,SINGLE,Hip1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Hip1.bam.gz,<NA>,Hip1,<NA>,Hip1 total hippocampus Ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS2708541,SRP125469,<NA>,<NA>,<NA>,male,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR631/007/SRR6315847,84123759,ftp.sra.ebi.ac.uk/vol1/srr/SRR631/007/SRR6315847,ftp.sra.ebi.ac.uk/vol1/srr/SRR631/007/SRR6315847,54bfe6835b867920fbe9f53961f6025a,<NA>,PRJNA418997,Mus musculus breed:C57BL/6J Genome sequencing,<NA>,<NA>,SRA633337,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,male,<NA>,<NA>,<NA>,<NA>,<NA>,hippocampus,<NA>\nPRJNA423188,SRX3489120,Illumina HiSeq 2500 sequencing; GSM2895436: KO-ribosome profiling; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895436: KO-ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213272,KO-ribosome profiling,Illumina HiSeq 2500,SRR6395814,31806217,1590310850,SAMN08213272,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2895436,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR639/004/SRR6395814/SRR6395814.fastq.gz,936059859,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/004/SRR6395814/SRR6395814.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/004/SRR6395814/SRR6395814.fastq.gz,7af5c07d6b22c8f0d11d9f5901aa613f,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2895436_r1,<NA>,GSM2895436,<NA>,KO-ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS2773282,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR639/004/SRR6395814,813541591,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/004/SRR6395814,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/004/SRR6395814,e087c53254938b808a16f38dec4db5e8,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX3489121,Illumina HiSeq 2500 sequencing; GSM2895437: KO-ribosome profiling input; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895437: KO-ribosome profiling input; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213281,KO-ribosome profiling input,Illumina HiSeq 2500,SRR6395815,43112301,2155615050,SAMN08213281,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2895437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR639/005/SRR6395815/SRR6395815.fastq.gz,1727742842,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/005/SRR6395815/SRR6395815.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/005/SRR6395815/SRR6395815.fastq.gz,6005365c1bf7bf7980141d98b684ceb6,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2895437_r1,<NA>,GSM2895437,<NA>,KO-ribosome profiling input,<NA>,<NA>,<NA>,<NA>,SRS2773283,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR639/005/SRR6395815,1119949812,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/005/SRR6395815,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/005/SRR6395815,876ccbfcb8ce10e21dc9a73cdd855975,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX3489122,Illumina HiSeq 2500 sequencing; GSM2895438: WT-ribosome profiling; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895438: WT-ribosome profiling; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213280,WT-ribosome profiling,Illumina HiSeq 2500,SRR6395816,40248624,2012431200,SAMN08213280,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2895438,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR639/006/SRR6395816/SRR6395816.fastq.gz,1151431385,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/006/SRR6395816/SRR6395816.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/006/SRR6395816/SRR6395816.fastq.gz,21435d5e1a89afc592c07b2df3821a98,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2895438_r1,<NA>,GSM2895438,<NA>,WT-ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS2773284,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR639/006/SRR6395816,1008661914,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/006/SRR6395816,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/006/SRR6395816,50ee9e0820ed113385780beed361330c,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX3489123,Illumina HiSeq 2500 sequencing; GSM2895439: WT-ribosome profiling input; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM2895439: WT-ribosome profiling input; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN08213279,WT-ribosome profiling input,Illumina HiSeq 2500,SRR6395817,33585015,1679250750,SAMN08213279,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM2895439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR639/007/SRR6395817/SRR6395817.fastq.gz,1363809194,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/007/SRR6395817/SRR6395817.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR639/007/SRR6395817/SRR6395817.fastq.gz,aef07d7ac58df3eeddc9c1b66fb15829,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM2895439_r1,<NA>,GSM2895439,<NA>,WT-ribosome profiling input,<NA>,<NA>,<NA>,<NA>,SRS2773285,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR639/007/SRR6395817,876687887,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/007/SRR6395817,ftp.sra.ebi.ac.uk/vol1/srr/SRR639/007/SRR6395817,d73904a797cf04efbcd5b2d4ef5cc4d1,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX4044241,Illumina HiSeq 2500 sequencing; GSM3131863: WT-ribosome profiling replicate 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM3131863: WT-ribosome profiling replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076541,WT-ribosome profiling replicate 2,Illumina HiSeq 2500,SRR7123172,43725854,2186292700,SAMN09076541,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3131863,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/002/SRR7123172/SRR7123172.fastq.gz,1501854821,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/002/SRR7123172/SRR7123172.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/002/SRR7123172/SRR7123172.fastq.gz,8617d4b057b4c9d53ef922db78183647,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3131863_r1,<NA>,GSM3131863,<NA>,WT-ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS3261678,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR712/002/SRR7123172,1225588701,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/002/SRR7123172,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/002/SRR7123172,fce6dd03766c1a0299c4b70762a0f1c7,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX4044242,Illumina HiSeq 3000 sequencing; GSM3131864: WT-ribosome profiling input replicate 2; Mus musculus; OTHER,Illumina HiSeq 3000 sequencing; GSM3131864: WT-ribosome profiling input replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076736,WT-ribosome profiling input replicate 2,Illumina HiSeq 3000,SRR7123173,26771648,8031494400,SAMN09076736,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3131864,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_2.fastq.gz,2087413257;2342504750,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/003/SRR7123173/SRR7123173_2.fastq.gz,46ba1f5c4da2c57a834850f48945c21e;4b2c8d6f0e3a048ee8e4bc0f52e7d8d3,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3131864_r1,<NA>,GSM3131864,<NA>,WT-ribosome profiling input replicate 2,<NA>,<NA>,<NA>,<NA>,SRS3261679,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR712/003/SRR7123173,3208015019,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/003/SRR7123173,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/003/SRR7123173,0aad0d0f86cdf9272dc97ff70da101f6,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX4044243,Illumina HiSeq 2500 sequencing; GSM3131865: KO-ribosome profiling replicate 2; Mus musculus; OTHER,Illumina HiSeq 2500 sequencing; GSM3131865: KO-ribosome profiling replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076734,KO-ribosome profiling replicate 2,Illumina HiSeq 2500,SRR7123174,32054335,1602716750,SAMN09076734,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3131865,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/004/SRR7123174/SRR7123174.fastq.gz,1099602206,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/004/SRR7123174/SRR7123174.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/004/SRR7123174/SRR7123174.fastq.gz,0e14bda849fe16bbc1f5279b4cffc368,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3131865_r1,<NA>,GSM3131865,<NA>,KO-ribosome profiling replicate 2,<NA>,<NA>,<NA>,<NA>,SRS3261680,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR712/004/SRR7123174,898296261,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/004/SRR7123174,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/004/SRR7123174,e625db9da60050b93538a05fcfb4ab02,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA423188,SRX4044244,Illumina HiSeq 3000 sequencing; GSM3131866: KO-ribosome profiling input replicate 2; Mus musculus; OTHER,Illumina HiSeq 3000 sequencing; GSM3131866: KO-ribosome profiling input replicate 2; Mus musculus; OTHER,10090,Mus musculus,OTHER,TRANSCRIPTOMIC,other,SAMN09076731,KO-ribosome profiling input replicate 2,Illumina HiSeq 3000,SRR7123175,24239197,7271759100,SAMN09076731,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Bone marrow derived mature dendritic cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3131866,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_1.fastq.gz;fasp.sra.ebi.ac.uk:/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_2.fastq.gz,1909293126;2184342432,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_2.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR712/005/SRR7123175/SRR7123175_2.fastq.gz,b9d6c5fc2237bca0663d8ddf4bef9948;bbca9a97fc81c5ad1edf1efb02b3e84e,2019-04-03,2019-04-03,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-04-03,<NA>,PAIRED,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3131866_r1,<NA>,GSM3131866,<NA>,KO-ribosome profiling input replicate 2,<NA>,<NA>,<NA>,<NA>,SRS3261681,SRP127229,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR712/005/SRR7123175,2971907873,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/005/SRR7123175,ftp.sra.ebi.ac.uk/vol1/srr/SRR712/005/SRR7123175,d69d0f07bdaaacbdc7824e55db9359b7,C57BL/6,GSE108331,Next Generation Sequencing Facilitates Quantitative Analysis of  mRNA translation efficiency of Wild Type and Mettl3-/- mice,<NA>,<NA>,SRA640462,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA466150,SRX4053284,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #4,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #4,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091234,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132277,53840664,4038049800,SAMN09091234,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_7,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/007/SRR7132277/SRR7132277.fastq.gz,1124738142,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/007/SRR7132277/SRR7132277.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/007/SRR7132277/SRR7132277.fastq.gz,0e953dcb7d93ca6e17532231aba5f084,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_7,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi2_FPs_d.fastq.gz,<NA>,F_FP_7,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270324,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/007/SRR7132277,1413271561,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/007/SRR7132277,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/007/SRR7132277,0c3098bceec58be58b7ced3a882e9096,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053275,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091232,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132286,96147759,7211081925,SAMN09091232,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-06-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_5,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/006/SRR7132286/SRR7132286.fastq.gz,2203867158,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/006/SRR7132286/SRR7132286.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/006/SRR7132286/SRR7132286.fastq.gz,08db2ce1b5630ca7750142b067272437,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_5,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi2_FPs_b.fasta.gz,<NA>,F_FP_5,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270292,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/006/SRR7132286,2676452054,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/006/SRR7132286,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/006/SRR7132286,ae671d72bb5a61b72c4e4f1ab8f72d15,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053274,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091233,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132287,49283336,3696250200,SAMN09091233,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_6,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/007/SRR7132287/SRR7132287.fastq.gz,1149140870,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/007/SRR7132287/SRR7132287.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/007/SRR7132287/SRR7132287.fastq.gz,4e7a1ccd80b4a9a8c1a93d435328856a,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_6,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi2_FPs_c.fastq.gz,<NA>,F_FP_6,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270291,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/007/SRR7132287,1373972084,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/007/SRR7132287,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/007/SRR7132287,de1695901d4e059f0e66170ac49a40a5,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053273,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091226,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132288,78056300,5854222500,SAMN09091226,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,C_FP_3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/008/SRR7132288/SRR7132288.fastq.gz,1753850615,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/008/SRR7132288/SRR7132288.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/008/SRR7132288/SRR7132288.fastq.gz,2656cf7eab927bfd5e29eee19f982dcf,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,C_FP_3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mCherry_FPs_b.fastq.gz,<NA>,C_FP_3,<NA>,Control Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270290,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/008/SRR7132288,2075483296,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/008/SRR7132288,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/008/SRR7132288,a085a9cb60e461be316313febefa71ae,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053272,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #4,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #4,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091227,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132289,44947356,3371051700,SAMN09091227,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,C_FP_4,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/009/SRR7132289/SRR7132289.fastq.gz,943161434,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/009/SRR7132289/SRR7132289.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/009/SRR7132289/SRR7132289.fastq.gz,eb2c3316ba0f4fa15cf1dc5579644347,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,C_FP_4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mCherry_FPs_c.fastq.gz,<NA>,C_FP_4,<NA>,Control Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270289,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/009/SRR7132289,1176467336,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/009/SRR7132289,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/009/SRR7132289,9148d75c6917eabc4e1d33c275763322,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053271,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:control replicate #1,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:control replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091224,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,Illumina HiSeq 2000,SRR7132290,64927827,3246391350,SAMN09091224,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-02-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,C_FP_1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/000/SRR7132290/SRR7132290.fastq.gz,2060881611,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/000/SRR7132290/SRR7132290.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/000/SRR7132290/SRR7132290.fastq.gz,7a699de37856310ebedd32e000a5e1e0,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,C_FP_1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GFP_FPs.fastq.gz,<NA>,C_FP_1,<NA>,Control Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270313,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/000/SRR7132290,1852026260,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/000/SRR7132290,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/000/SRR7132290,c151e99789f064be9f61362e7047046d,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053270,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:control replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091225,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132291,89912857,6743464275,SAMN09091225,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-06-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,C_FP_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/001/SRR7132291/SRR7132291.fastq.gz,2133071660,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/001/SRR7132291/SRR7132291.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/001/SRR7132291/SRR7132291.fastq.gz,2aab0173f97b3547041d6c72aaf43837,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,C_FP_2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,mCherry_FPs_a.fasta.gz,<NA>,C_FP_2,<NA>,Control Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270288,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/001/SRR7132291,2528331507,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/001/SRR7132291,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/001/SRR7132291,5886b3cf81ef5cfb4d10b347d351e08c,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053269,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #3,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #3,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091230,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132292,69602339,5220175425,SAMN09091230,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/002/SRR7132292/SRR7132292.fastq.gz,1379637220,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/002/SRR7132292/SRR7132292.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/002/SRR7132292/SRR7132292.fastq.gz,3c72b661e38ad76255dc573f7e65d44e,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi1_FPs_c.fastq.gz,<NA>,F_FP_3,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270287,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/002/SRR7132292,1763525151,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/002/SRR7132292,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/002/SRR7132292,4dfd4f3181adbb8e05382f4b1f558019,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053268,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #1,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #2 replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091231,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132293,57310413,2865520650,SAMN09091231,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-02-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_4,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/003/SRR7132293/SRR7132293.fastq.gz,1881457141,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/003/SRR7132293/SRR7132293.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/003/SRR7132293/SRR7132293.fastq.gz,30f0662eafb06468bc7a7500784bd3dc,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi2_FPs_a.fastq.gz,<NA>,F_FP_4,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270286,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/003/SRR7132293,1665888745,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/003/SRR7132293,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/003/SRR7132293,1fbb8ccbd840bebc323a2180a3fe0fce,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053267,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1 replicate #1,Illumina HiSeq 2000 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1 replicate #1,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091228,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,Illumina HiSeq 2000,SRR7132294,106961271,8022095325,SAMN09091228,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-06-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/004/SRR7132294/SRR7132294.fastq.gz,2344199204,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/004/SRR7132294/SRR7132294.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/004/SRR7132294/SRR7132294.fastq.gz,4713ebe5abc1071db56a0f952057721c,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi1_FPs_a.fasta.gz,<NA>,F_FP_1,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270284,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/004/SRR7132294,2871757497,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/004/SRR7132294,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/004/SRR7132294,a337252dc52b5940205d771b6cd21710,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA466150,SRX4053266,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #2,NextSeq 500 sequencing; Ribosome profiling of Drosophila ovary:Fmr1 germline RNAi line #1  replicate #2,7227,Drosophila melanogaster,OTHER,TRANSCRIPTOMIC,MNase,SAMN09091229,This sample has been submitted by pda|ejgreenblatt on 2018-07-06; Drosophila melanogaster,NextSeq 500,SRR7132295,43401129,3255084675,SAMN09091229,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4003258,<NA>,<NA>,2016-07-01,<NA>,<NA>,USA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,F_FP_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR713/005/SRR7132295/SRR7132295.fastq.gz,914351757,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/005/SRR7132295/SRR7132295.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR713/005/SRR7132295/SRR7132295.fastq.gz,c9076604c3baa65d78779315cb5eaf96,2018-07-06,2018-07-06,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-07-06,<NA>,SINGLE,F_FP_2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Fmr1_RNAi1_FPs_b.fastq.gz,<NA>,F_FP_2,<NA>,Fmr1 RNAi Ribosome Footprinting,<NA>,<NA>,<NA>,<NA>,SRS3270285,SRP144935,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR713/005/SRR7132295,1125445948,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/005/SRR7132295,ftp.sra.ebi.ac.uk/vol1/srr/SRR713/005/SRR7132295,ddcf070ec4f9ab2f22f547917fddc766,<NA>,PRJNA466150,Fmr1-dependent translation in the Drosophila ovary,<NA>,<NA>,SRA700696,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,25.0,<NA>,ovary,<NA>\nPRJNA473989,SRX4147683,Illumina HiSeq 2500 sequencing; GSM3168387: MDA-MB-231 ribosome profiling; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168387: MDA-MB-231 ribosome profiling; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288723,MDA-MB-231 ribosome profiling,Illumina HiSeq 2500,SRR7241910,27002674,1350133700,SAMN09288723,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,MDA-MB-231,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3168387,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR724/000/SRR7241910/SRR7241910.fastq.gz,848418211,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/000/SRR7241910/SRR7241910.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/000/SRR7241910/SRR7241910.fastq.gz,80524476fd134a25a9b321f5dcb03a14,2019-01-29,2019-01-29,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-01-29,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3168387_r1,<NA>,GSM3168387,<NA>,MDA-MB-231 ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS3361275,SRP149446,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR724/000/SRR7241910,659201384,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/000/SRR7241910,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/000/SRR7241910,48d9b1bed2736d64c0146e5ca9723b93,<NA>,GSE115161,Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4],<NA>,<NA>,SRA713167,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA473989,SRX4147684,Illumina HiSeq 2500 sequencing; GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288722,C. elegans embryos ribosome profiling,Illumina HiSeq 2500,SRR7241911,76408239,3820411950,SAMN09288722,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3168388,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR724/001/SRR7241911/SRR7241911.fastq.gz,2206843716,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/001/SRR7241911/SRR7241911.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/001/SRR7241911/SRR7241911.fastq.gz,aed27e270b927c596013df37204ac616,2019-01-29,2019-01-29,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-01-29,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3168388_r1,<NA>,GSM3168388,<NA>,C. elegans embryos ribosome profiling,<NA>,<NA>,<NA>,<NA>,SRS3361274,SRP149446,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR724/001/SRR7241911,1744254785,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/001/SRR7241911,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/001/SRR7241911,224740e2b27a4b736fb1687ccb1a6c1b,<NA>,GSE115161,Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4],<NA>,<NA>,SRA713167,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,embryos,<NA>\nPRJNA473989,SRX4147685,Illumina HiSeq 2500 sequencing; GSM3168389: HeLa ribosome profiling 1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168389: HeLa ribosome profiling 1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288721,HeLa ribosome profiling 1,Illumina HiSeq 2500,SRR7241912,53902947,2695147350,SAMN09288721,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3168389,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR724/002/SRR7241912/SRR7241912.fastq.gz,1630235426,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/002/SRR7241912/SRR7241912.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/002/SRR7241912/SRR7241912.fastq.gz,775a59049e991379d7158733018c9582,2019-01-29,2019-01-29,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-01-29,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3168389_r1,<NA>,GSM3168389,<NA>,HeLa ribosome profiling 1,<NA>,<NA>,<NA>,<NA>,SRS3361276,SRP149446,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR724/002/SRR7241912,1281564311,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/002/SRR7241912,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/002/SRR7241912,afd7b30e3b101f33160979abb25fe765,<NA>,GSE115161,Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4],<NA>,<NA>,SRA713167,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA473989,SRX4147686,Illumina HiSeq 2500 sequencing; GSM3168390: HeLa ribosome profiling 2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3168390: HeLa ribosome profiling 2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN09288720,HeLa ribosome profiling 2,Illumina HiSeq 2500,SRR7241913,45242293,2262114650,SAMN09288720,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3168390,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR724/003/SRR7241913/SRR7241913.fastq.gz,1652908923,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/003/SRR7241913/SRR7241913.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR724/003/SRR7241913/SRR7241913.fastq.gz,7035b17c1590777efe06c1c19a0cf906,2019-01-29,2019-01-29,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-01-29,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3168390_r1,<NA>,GSM3168390,<NA>,HeLa ribosome profiling 2,<NA>,<NA>,<NA>,<NA>,SRS3361277,SRP149446,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR724/003/SRR7241913,1257402030,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/003/SRR7241913,ftp.sra.ebi.ac.uk/vol1/srr/SRR724/003/SRR7241913,bac1eb24156c61857936470bf56dbd20,<NA>,GSE115161,Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4],<NA>,<NA>,SRA713167,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA480953,SRX4387664,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,other,SAMN09652702,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517655,227390056,11369502800,SAMN09652702,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,B cell,SUB4286241,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,TRA00091977,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR751/005/SRR7517655/SRR7517655.fastq.gz,6189708650,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/005/SRR7517655/SRR7517655.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/005/SRR7517655/SRR7517655.fastq.gz,f7ba70a7a4bf5035401e981eb0a57eb5,2019-08-13,2019-08-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-13,<NA>,SINGLE,TRA00091977,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,LIB028402_TRA00091977_S2_L002_R1.fastq.bz2,<NA>,HZ_CTRLrpf,<NA>,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS3544143,SRP153324,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR751/005/SRR7517655,5097849710,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/005/SRR7517655,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/005/SRR7517655,42b9159e4a6caf25e7f3bbbeec8b1f5a,C57BL/6J,PRJNA480953,The role of eIF5A in primary murine B cells revealed by ribosome profiling,<NA>,<NA>,SRA738905,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,Spleen,<NA>\nPRJNA480953,SRX4387663,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,other,SAMN09652704,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517656,287250155,14362507750,SAMN09652704,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,B cell,SUB4286241,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,TRA00085897,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR751/006/SRR7517656/SRR7517656.fastq.gz,7977738166,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/006/SRR7517656/SRR7517656.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/006/SRR7517656/SRR7517656.fastq.gz,344c6f66fb44e45c8e0b407b84323025,2019-08-13,2019-08-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-13,<NA>,SINGLE,TRA00085897,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,LIB026570_TRA00085897_S3_L002_R1.fastq.gz,<NA>,HZ_GC7rpf,<NA>,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS3544146,SRP153324,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR751/006/SRR7517656,6344636429,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/006/SRR7517656,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/006/SRR7517656,0e005d80d4e0c8048a9f9b26b9dcff69,C57BL/6J,PRJNA480953,The role of eIF5A in primary murine B cells revealed by ribosome profiling,<NA>,<NA>,SRA738905,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,Spleen,<NA>\nPRJNA480953,SRX4387662,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SAMN09652701,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517657,162626902,8131345100,SAMN09652701,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,B cell,SUB4286241,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,TRA00091981,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR751/007/SRR7517657/SRR7517657.fastq.gz,4886749336,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/007/SRR7517657/SRR7517657.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/007/SRR7517657/SRR7517657.fastq.gz,34ab65215e97e03c079590b6f54b13f2,2019-08-13,2019-08-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-13,<NA>,SINGLE,TRA00091981,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,LIB028402_TRA00091981_S3_L002_R1.fastq.bz2,<NA>,HZ_CTRLmRNA,<NA>,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS3544145,SRP153324,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR751/007/SRR7517657,3675811875,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/007/SRR7517657,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/007/SRR7517657,f68c703f86ff1374c86b29db159ee94f,C57BL/6J,PRJNA480953,The role of eIF5A in primary murine B cells revealed by ribosome profiling,<NA>,<NA>,SRA738905,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,Spleen,<NA>\nPRJNA480953,SRX4387661,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,NextSeq 500 sequencing; Ribosome profiling of Mus Musculus: adult female B cells,10090,Mus musculus,RNA-Seq,TRANSCRIPTOMIC,Oligo-dT,SAMN09652703,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,NextSeq 500,SRR7517658,146674049,7333702450,SAMN09652703,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,B cell,SUB4286241,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,TRA00091974,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR751/008/SRR7517658/SRR7517658.fastq.gz,4484992453,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/008/SRR7517658/SRR7517658.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR751/008/SRR7517658/SRR7517658.fastq.gz,5c65ae76e86dd1e2fef09cd8dfdc42f4,2019-08-13,2019-08-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-13,<NA>,SINGLE,TRA00091974,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,LIB028402_TRA00091974_S1_L002_R1.fastq.bz2,<NA>,HZ_GC7mRNA,<NA>,This sample has been submitted by pda|hanlin1025@gmail.com on 2019-08-13; Mus musculus,<NA>,<NA>,<NA>,<NA>,SRS3544144,SRP153324,<NA>,<NA>,<NA>,female,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR751/008/SRR7517658,3338425710,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/008/SRR7517658,ftp.sra.ebi.ac.uk/vol1/srr/SRR751/008/SRR7517658,c0490ab37ddcbfcf7023a3271d6ddec7,C57BL/6J,PRJNA480953,The role of eIF5A in primary murine B cells revealed by ribosome profiling,<NA>,<NA>,SRA738905,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,female,<NA>,<NA>,<NA>,<NA>,<NA>,Spleen,<NA>\nPRJNA495919,SRX4870934,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type plus radicicol,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type plus radicicol,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234888,wild type plus RAD,NextSeq 500,SRR8040412,45205841,3435643916,SAMN10234888,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4620501,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,0002_rib,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR804/002/SRR8040412/SRR8040412.fastq.gz,1411677635,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/002/SRR8040412/SRR8040412.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/002/SRR8040412/SRR8040412.fastq.gz,5c31345e6def170e30c77d3c6d457322,2018-11-17,2018-11-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-17,<NA>,SINGLE,0002_rib,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0002_rib_1.fq.gz,<NA>,0002,<NA>,wild type plus RAD,<NA>,<NA>,<NA>,<NA>,SRS3925916,SRP165276,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR804/002/SRR8040412,1438086993,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/002/SRR8040412,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/002/SRR8040412,34a1e7f195aea9986f7a0d06ee9e7fee,<NA>,PRJNA495919,Ribosome Profiling Reveals HSP90 Inhibitor Effects on Stage-specific Protein Synthesis in Leishmania donovani,<NA>,<NA>,SRA793498,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA495919,SRX4870932,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type,NextSeq 500 sequencing; Ribosome profiling of L. donovani wild type,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234887,wild type minus RAD,NextSeq 500,SRR8040414,24741340,1880341840,SAMN10234887,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4620501,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,0001_rib,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR804/004/SRR8040414/SRR8040414.fastq.gz,769242162,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/004/SRR8040414/SRR8040414.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/004/SRR8040414/SRR8040414.fastq.gz,4ee32e6d64d41df6f5ef38274b36cef8,2018-11-17,2018-11-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-17,<NA>,SINGLE,0001_rib,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0001_rib_1.fq.gz,<NA>,0001,<NA>,wild type minus RAD,<NA>,<NA>,<NA>,<NA>,SRS3925915,SRP165276,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR804/004/SRR8040414,788057181,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/004/SRR8040414,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/004/SRR8040414,4eb22bc6e85e432978adaebbe65e5717,<NA>,PRJNA495919,Ribosome Profiling Reveals HSP90 Inhibitor Effects on Stage-specific Protein Synthesis in Leishmania donovani,<NA>,<NA>,SRA793498,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA495919,SRX4870930,NextSeq 500 sequencing; Ribosome profiling of L. donovani HSP90rr plus radicicol,NextSeq 500 sequencing; Ribosome profiling of L. donovani HSP90rr plus radicicol,5661,Leishmania donovani,OTHER,TRANSCRIPTOMIC,RANDOM,SAMN10234889,HSP90rr plus RAD,NextSeq 500,SRR8040416,28476385,2164205260,SAMN10234889,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB4620501,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,0003_rib,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR804/006/SRR8040416/SRR8040416.fastq.gz,890302114,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/006/SRR8040416/SRR8040416.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR804/006/SRR8040416/SRR8040416.fastq.gz,f8ee6cb16f2605bb1ebf910a45aead88,2018-11-17,2018-11-17,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-11-17,<NA>,SINGLE,0003_rib,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,0003_rib_1.fq.gz,<NA>,0003,<NA>,HSP90rr plus RAD,<NA>,<NA>,<NA>,<NA>,SRS3925914,SRP165276,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR804/006/SRR8040416,910401710,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/006/SRR8040416,ftp.sra.ebi.ac.uk/vol1/srr/SRR804/006/SRR8040416,c471a7df4b5443e8f5d00a1cb7028c4a,<NA>,PRJNA495919,Ribosome Profiling Reveals HSP90 Inhibitor Effects on Stage-specific Protein Synthesis in Leishmania donovani,<NA>,<NA>,SRA793498,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA438895,SRX5075516,Illumina MiSeq sequencing; GSM3048762: ΔrrnIcomp - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048762: ΔrrnIcomp - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731684,ΔrrnIcomp - ribosome profiling data rep1,Illumina MiSeq,SRR8258332,5105532,183799152,SAMN08731684,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3048762_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR825/002/SRR8258332/SRR8258332.fastq.gz,109239015,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/002/SRR8258332/SRR8258332.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/002/SRR8258332/SRR8258332.fastq.gz,4b6abce428783686400b01eb43ed708d,2018-12-07,2018-12-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3048762_r11,<NA>,GSM3048762,<NA>,ΔrrnIcomp - ribosome profiling data rep1,<NA>,<NA>,<NA>,<NA>,SRS3060430,SRP152673,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR825/002/SRR8258332,94090545,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/002/SRR8258332,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/002/SRR8258332,222248e421aca316edf35df568c9f14b,CMCP6,GSE111991,Divergent rRNAs as regulators of gene expression at the ribosome level,<NA>,<NA>,SRA667510,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA438895,SRX5075517,Illumina MiSeq sequencing; GSM3048763: ΔrrnI - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048763: ΔrrnI - ribosome profiling data rep1; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731683,ΔrrnI - ribosome profiling data rep1,Illumina MiSeq,SRR8258333,5834528,210043008,SAMN08731683,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3048763_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR825/003/SRR8258333/SRR8258333.fastq.gz,123577878,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/003/SRR8258333/SRR8258333.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/003/SRR8258333/SRR8258333.fastq.gz,3647e42d3a0facf308ed02c719326f0d,2018-12-07,2018-12-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3048763_r11,<NA>,GSM3048763,<NA>,ΔrrnI - ribosome profiling data rep1,<NA>,<NA>,<NA>,<NA>,SRS3060431,SRP152673,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR825/003/SRR8258333,107765216,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/003/SRR8258333,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/003/SRR8258333,7ca6fdaeb7b88b76c239dfd2c2165ddf,CMCP6,GSE111991,Divergent rRNAs as regulators of gene expression at the ribosome level,<NA>,<NA>,SRA667510,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA438895,SRX5075520,Illumina MiSeq sequencing; GSM3048766: ΔrrnIcomp - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048766: ΔrrnIcomp - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731680,ΔrrnIcomp - ribosome profiling data rep2,Illumina MiSeq,SRR8258336,20039467,1022012817,SAMN08731680,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3048766_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR825/006/SRR8258336/SRR8258336.fastq.gz,627805403,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/006/SRR8258336/SRR8258336.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/006/SRR8258336/SRR8258336.fastq.gz,39d008299c8a244e4e4e86f1cef2e3ef,2018-12-07,2018-12-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3048766_r11,<NA>,GSM3048766,<NA>,ΔrrnIcomp - ribosome profiling data rep2,<NA>,<NA>,<NA>,<NA>,SRS3060434,SRP152673,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR825/006/SRR8258336,537173469,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/006/SRR8258336,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/006/SRR8258336,706959b0f1f64c1a07ddb9ec1253dbcd,CMCP6,GSE111991,Divergent rRNAs as regulators of gene expression at the ribosome level,<NA>,<NA>,SRA667510,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA438895,SRX5075521,Illumina MiSeq sequencing; GSM3048767: ΔrrnI - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,Illumina MiSeq sequencing; GSM3048767: ΔrrnI - ribosome profiling data rep2; Vibrio vulnificus CMCP6; RNA-Seq,216895,Vibrio vulnificus CMCP6,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN08731687,ΔrrnI - ribosome profiling data rep2,Illumina MiSeq,SRR8258337,26587915,1355983665,SAMN08731687,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3048767_2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR825/007/SRR8258337/SRR8258337.fastq.gz,764797415,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/007/SRR8258337/SRR8258337.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR825/007/SRR8258337/SRR8258337.fastq.gz,f238af2fdeff334596c329eda1aa7c74,2018-12-07,2018-12-07,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2018-12-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3048767_r11,<NA>,GSM3048767,<NA>,ΔrrnI - ribosome profiling data rep2,<NA>,<NA>,<NA>,<NA>,SRS3060435,SRP152673,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR825/007/SRR8258337,701009975,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/007/SRR8258337,ftp.sra.ebi.ac.uk/vol1/srr/SRR825/007/SRR8258337,1a7ae6c88711e40c9084af93d3b67c85,CMCP6,GSE111991,Divergent rRNAs as regulators of gene expression at the ribosome level,<NA>,<NA>,SRA667510,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA515289,SRX5252133,\"Illumina HiSeq 4000 sequencing; GSM3563711: HEK 293 cells, ribosome profiling, ctrl, Replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563711: HEK 293 cells, ribosome profiling, ctrl, Replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752247,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 1\",Illumina HiSeq 4000,SRR8445000,101076288,5154890688,SAMN10752247,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3563711,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR844/000/SRR8445000/SRR8445000.fastq.gz,2215505097,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/000/SRR8445000/SRR8445000.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/000/SRR8445000/SRR8445000.fastq.gz,26763ddc7d958cd8967fd893494cfb3b,2019-03-26,2019-03-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3563711_r1,<NA>,GSM3563711,<NA>,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 1\",<NA>,<NA>,<NA>,<NA>,SRS4253838,SRP179636,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR844/000/SRR8445000,1905525279,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/000/SRR8445000,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/000/SRR8445000,efc6c7003530fd51fa01fd01c8dde5d1,<NA>,GSE125114,DDX3 depletion selectively represses translation of structured mRNAs,<NA>,<NA>,SRA835182,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA515289,SRX5252134,\"Illumina HiSeq 4000 sequencing; GSM3563712: HEK 293 cells, ribosome profiling, ctrl, Replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563712: HEK 293 cells, ribosome profiling, ctrl, Replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752246,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 2\",Illumina HiSeq 4000,SRR8445001,96501939,4921598889,SAMN10752246,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3563712,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR844/001/SRR8445001/SRR8445001.fastq.gz,2098331792,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/001/SRR8445001/SRR8445001.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/001/SRR8445001/SRR8445001.fastq.gz,aadb8a1569e2bec88a0f9e23a9c6d116,2019-03-26,2019-03-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3563712_r1,<NA>,GSM3563712,<NA>,\"HEK 293 cells, ribosome profiling, ctrl, Replicate 2\",<NA>,<NA>,<NA>,<NA>,SRS4253840,SRP179636,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR844/001/SRR8445001,1821851589,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/001/SRR8445001,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/001/SRR8445001,5aeda3f2baf8fc688d095ac7e9cde7da,<NA>,GSE125114,DDX3 depletion selectively represses translation of structured mRNAs,<NA>,<NA>,SRA835182,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA515289,SRX5252135,\"Illumina HiSeq 4000 sequencing; GSM3563713: HEK 293 cells, ribosome profiling, siDDX3, Replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563713: HEK 293 cells, ribosome profiling, siDDX3, Replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752245,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 1\",Illumina HiSeq 4000,SRR8445002,92758439,4730680389,SAMN10752245,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3563713,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR844/002/SRR8445002/SRR8445002.fastq.gz,2077591718,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/002/SRR8445002/SRR8445002.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/002/SRR8445002/SRR8445002.fastq.gz,610ba705703871d9fc17668531e43957,2019-03-26,2019-03-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3563713_r1,<NA>,GSM3563713,<NA>,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 1\",<NA>,<NA>,<NA>,<NA>,SRS4253841,SRP179636,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR844/002/SRR8445002,1757147421,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/002/SRR8445002,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/002/SRR8445002,de25d81b6700bc517057ba3b2889fba8,<NA>,GSE125114,DDX3 depletion selectively represses translation of structured mRNAs,<NA>,<NA>,SRA835182,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA515289,SRX5252136,\"Illumina HiSeq 4000 sequencing; GSM3563714: HEK 293 cells, ribosome profiling, siDDX3, Replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3563714: HEK 293 cells, ribosome profiling, siDDX3, Replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN10752244,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 2\",Illumina HiSeq 4000,SRR8445003,92190382,4701709482,SAMN10752244,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3563714,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR844/003/SRR8445003/SRR8445003.fastq.gz,2165380231,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/003/SRR8445003/SRR8445003.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR844/003/SRR8445003/SRR8445003.fastq.gz,7e64589ba1303e7a58813cecf14a064f,2019-03-26,2019-03-26,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3563714_r1,<NA>,GSM3563714,<NA>,\"HEK 293 cells, ribosome profiling, siDDX3, Replicate 2\",<NA>,<NA>,<NA>,<NA>,SRS4253843,SRP179636,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR844/003/SRR8445003,1770229194,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/003/SRR8445003,ftp.sra.ebi.ac.uk/vol1/srr/SRR844/003/SRR8445003,5ee97eb3295b0ba87cee1f92415d9fe8,<NA>,GSE125114,DDX3 depletion selectively represses translation of structured mRNAs,<NA>,<NA>,SRA835182,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870722,4000000,304000000,SAMN02183598,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152436,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870722/SRR870722.fastq.gz,197663657,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870722/SRR870722.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870722/SRR870722.fastq.gz,e5ba4815f461766a29dd2e00e16441d2,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152436_r1,<NA>,GSM1152436,<NA>,WT input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431101,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870722,192066193,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870722,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870722,afb24ad65e29c3f366993d4f06110bb8,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870723,3768017,286369292,SAMN02183598,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152436,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870723/SRR870723.fastq.gz,188419365,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870723/SRR870723.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870723/SRR870723.fastq.gz,ec4d1ce0a6f009e9518c26b608ef36d6,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152436_r2,<NA>,GSM1152436,<NA>,WT input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431101,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870723,180226800,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870723,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870723,567731582d3cc588fbb01831c14dd931,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288474,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152436: WT input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183598,WT input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870724,4000000,304000000,SAMN02183598,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152436,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870724/SRR870724.fastq.gz,196900800,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870724/SRR870724.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870724/SRR870724.fastq.gz,2827dc3b130356bed54318185d368ade,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152436_r3,<NA>,GSM1152436,<NA>,WT input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431101,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870724,190374119,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870724,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870724,ad1499ef8e9b0b0cab3f36be4fe039a8,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870725,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870725/SRR870725.fastq.gz,179834876,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870725/SRR870725.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870725/SRR870725.fastq.gz,86700b518135e59b40e6b904a4482718,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r1,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870725,197150068,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870725,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870725,115bdaab68c1e37eb731b112335d5066,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870726,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870726/SRR870726.fastq.gz,189615384,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870726/SRR870726.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870726/SRR870726.fastq.gz,2aa83c6bddb05ed49c36bc50368cdc0d,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-11-15,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r2,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870726,203778942,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870726,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870726,5e690fc6923d53e33474b81d3a0fbf6f,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870727,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870727/SRR870727.fastq.gz,176385783,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870727/SRR870727.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870727/SRR870727.fastq.gz,bcd7ced12cffa50a14e88a40901a8972,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r3,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870727,194760200,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870727,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870727,ba13ba0de62255051542f36485abc180,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870728,3877037,294654812,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870728/SRR870728.fastq.gz,187051522,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870728/SRR870728.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870728/SRR870728.fastq.gz,06b537b61e36d1d6d4df29e32824c597,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r4,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870728,199733745,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870728,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870728,b78832f79029592b1e1bda8bb947aeb6,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870729,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870729/SRR870729.fastq.gz,178715175,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870729/SRR870729.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870729/SRR870729.fastq.gz,a862b87fa3f33be4fe9a1c667f717a7f,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-21,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r5,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870729,196267012,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870729,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870729,231fb711d4aa0d3d1fa7bd899e2bb0a0,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870730,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870730/SRR870730.fastq.gz,183298835,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870730/SRR870730.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870730/SRR870730.fastq.gz,54410e1e907028223f9877718b8b22c5,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-14,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r6,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870730,199553001,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870730,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870730,6c81352c2e8dd4f68adb54afbb827b97,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870731,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870731/SRR870731.fastq.gz,185209516,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870731/SRR870731.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870731/SRR870731.fastq.gz,36728aacadda3b144c7189022082c55f,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r7,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870731,200664633,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870731,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870731,34bbcb9b69d6f288129136bd5d25c552,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870732,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870732/SRR870732.fastq.gz,172470761,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870732/SRR870732.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870732/SRR870732.fastq.gz,fcffa5443520cfd8d96c21daaab681eb,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r8,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870732,192019453,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870732,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870732,8de904a24c904ce797eb2a25cd83f593,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288475,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152437: WT ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183599,WT ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870733,4000000,304000000,SAMN02183599,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152437,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870733/SRR870733.fastq.gz,178737385,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870733/SRR870733.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870733/SRR870733.fastq.gz,1948cb05270ed7530c2857b5d945d7be,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152437_r9,<NA>,GSM1152437,<NA>,WT ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431102,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870733,196476827,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870733,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870733,7e2567b2740a9e2aeeba39b3f18bd351,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870734,4000000,304000000,SAMN02183600,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152438,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870734/SRR870734.fastq.gz,195225206,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870734/SRR870734.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870734/SRR870734.fastq.gz,65ce951618b72604730ddce50e161997,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-26,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152438_r1,<NA>,GSM1152438,<NA>,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431104,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870734,187651374,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870734,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870734,f0d6b06082dc5589db05a31898c9c9df,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870735,4000000,304000000,SAMN02183600,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152438,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870735/SRR870735.fastq.gz,197737656,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870735/SRR870735.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870735/SRR870735.fastq.gz,6e00e2475dfa105182819e2dde020373,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152438_r2,<NA>,GSM1152438,<NA>,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431104,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870735,189019159,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870735,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870735,098bb0356a95deff87726095783084a3,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288476,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152438: Nanog + SoxB1 MO input mRNA for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183600,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,Illumina HiSeq 2000,SRR870736,2117060,160896560,SAMN02183600,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152438,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870736/SRR870736.fastq.gz,105481774,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870736/SRR870736.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870736/SRR870736.fastq.gz,848b0c500a750b1d1e19a30cb1ddb54c,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152438_r3,<NA>,GSM1152438,<NA>,Nanog + SoxB1 MO input mRNA for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431104,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870736,99957115,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870736,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870736,b6b2896c63f77d29bfe3f3a93cccdf0d,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870737,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870737/SRR870737.fastq.gz,180149816,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870737/SRR870737.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870737/SRR870737.fastq.gz,f5b927159147662341cf586d40ceea04,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r1,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870737,193897543,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870737,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870737,899a6f2eaa169e97892e5fec9f98d3a1,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870738,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870738/SRR870738.fastq.gz,175447118,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870738/SRR870738.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870738/SRR870738.fastq.gz,2f9810ae4f3a29dc78b6784b647b576f,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-24,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r10,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870738,190593303,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870738,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870738,41b3a9e7db57f2b10eb59fd61f91a5cd,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870739,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870739/SRR870739.fastq.gz,170173190,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870739/SRR870739.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870739/SRR870739.fastq.gz,564c2ea50788ac5d99194558df983cae,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-30,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r2,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870739,186661314,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870739,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870739,fd7a59c85f3f11862ea89806b6479c03,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870740,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870740/SRR870740.fastq.gz,180033228,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870740/SRR870740.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870740/SRR870740.fastq.gz,081ab9269fbf9882baeaf584b9341daf,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r3,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870740,193969130,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870740,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870740,0a9763e1cfe83bbc340210e14c30c604,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870741,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870741/SRR870741.fastq.gz,172965067,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870741/SRR870741.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870741/SRR870741.fastq.gz,420d50b1e8df0ed20b7a5782e313595f,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r4,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870741,188806088,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870741,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870741,826c17bf89146e4cde8883dc9f10d494,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870742,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870742/SRR870742.fastq.gz,187241483,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870742/SRR870742.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870742/SRR870742.fastq.gz,627d3dbaa6dec9b2869696d2991ddd02,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r5,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870742,199190281,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870742,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870742,6ef76aa734e77e6f83920adf1cac55f8,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870743,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870743/SRR870743.fastq.gz,188800807,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870743/SRR870743.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870743/SRR870743.fastq.gz,04449c3337abd0d73e39e1615780fa2e,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-01-20,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r6,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870743,200140085,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870743,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870743,dbc304693fdf253dd762db74c6a243fd,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870744,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870744/SRR870744.fastq.gz,180342712,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870744/SRR870744.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870744/SRR870744.fastq.gz,3fdacfa4139b457ec0185adeed43805a,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r7,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870744,194220112,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870744,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870744,6a96dc65ba6449e91ef27e9310e04fbf,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870745,2436469,185171644,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870745/SRR870745.fastq.gz,120745016,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870745/SRR870745.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870745/SRR870745.fastq.gz,c73dbd3f559fabb8cc3a6dfed7954b05,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-05-25,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r8,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870745,126025782,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870745,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870745,ffd64c91991781311c6fb4ff4bf8acac,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA206070,SRX288477,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,Illumina HiSeq 2000 sequencing; GSM1152439: Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling; Danio rerio; OTHER,7955,Danio rerio,OTHER,TRANSCRIPTOMIC,other,SAMN02183601,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,Illumina HiSeq 2000,SRR870746,4000000,304000000,SAMN02183601,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,2hpf,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1152439,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR870/SRR870746/SRR870746.fastq.gz,177708003,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870746/SRR870746.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR870/SRR870746/SRR870746.fastq.gz,37bf463a99bab447cfe5381cb9c66cb6,2013-11-13,2013-11-13,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-10-07,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1152439_r9,<NA>,GSM1152439,<NA>,Nanog + SoxB1 ribosome protected fragments for Ribosome Profiling,<NA>,<NA>,<NA>,<NA>,SRS431103,SRP023492,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR870/SRR870746,192072090,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870746,ftp.sra.ebi.ac.uk/vol1/srr/SRR870/SRR870746,9e5d25c8ad3c74a6c9e08ff41c6a760a,TUAB,GSE47558,\"Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition\",<NA>,<NA>,SRA082637,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Whole embryos,<NA>\nPRJNA527204,SRX5525062,Illumina HiSeq 2500 sequencing; GSM3671680: ribosome profiling wt_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671680: ribosome profiling wt_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130407,ribosome profiling wt_1,Illumina HiSeq 2500,SRR8732200,18661991,933099550,SAMN11130407,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671680,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/000/SRR8732200/SRR8732200.fastq.gz,842376117,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/000/SRR8732200/SRR8732200.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/000/SRR8732200/SRR8732200.fastq.gz,14f9afe848c24e868249a3c44853183e,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671680_r1,<NA>,GSM3671680,<NA>,ribosome profiling wt_1,<NA>,<NA>,<NA>,<NA>,SRS4491743,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/000/SRR8732200,600121455,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/000/SRR8732200,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/000/SRR8732200,1317bf4edf06c3e6c3388a29b4d68892,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525063,Illumina HiSeq 2500 sequencing; GSM3671681: ribosome profiling wt_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671681: ribosome profiling wt_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130406,ribosome profiling wt_2,Illumina HiSeq 2500,SRR8732201,17636110,881805500,SAMN11130406,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671681,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/001/SRR8732201/SRR8732201.fastq.gz,798721343,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/001/SRR8732201/SRR8732201.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/001/SRR8732201/SRR8732201.fastq.gz,55fe1b299593f826d014d0715cffe0d7,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671681_r1,<NA>,GSM3671681,<NA>,ribosome profiling wt_2,<NA>,<NA>,<NA>,<NA>,SRS4491744,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/001/SRR8732201,563407508,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/001/SRR8732201,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/001/SRR8732201,93c6d5f86ac4c089f6b335165c0732ef,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525064,Illumina HiSeq 2500 sequencing; GSM3671682: ribosome profiling wt_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671682: ribosome profiling wt_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130405,ribosome profiling wt_3,Illumina HiSeq 2500,SRR8732202,23560878,1178043900,SAMN11130405,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671682,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/002/SRR8732202/SRR8732202.fastq.gz,1065000760,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/002/SRR8732202/SRR8732202.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/002/SRR8732202/SRR8732202.fastq.gz,609b9c20836b37d87cf7afa8c6373383,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671682_r1,<NA>,GSM3671682,<NA>,ribosome profiling wt_3,<NA>,<NA>,<NA>,<NA>,SRS4491745,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/002/SRR8732202,754864028,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/002/SRR8732202,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/002/SRR8732202,91173d814ca8c1aa71736f91ff442f17,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525065,Illumina HiSeq 2500 sequencing; GSM3671683: ribosome profiling APP_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671683: ribosome profiling APP_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130404,ribosome profiling APP_1,Illumina HiSeq 2500,SRR8732203,22107235,1105361750,SAMN11130404,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671683,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/003/SRR8732203/SRR8732203.fastq.gz,1001251765,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/003/SRR8732203/SRR8732203.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/003/SRR8732203/SRR8732203.fastq.gz,58fa21f733185bafe7220c77e4385aa0,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671683_r1,<NA>,GSM3671683,<NA>,ribosome profiling APP_1,<NA>,<NA>,<NA>,<NA>,SRS4491746,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/003/SRR8732203,705396420,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/003/SRR8732203,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/003/SRR8732203,a893d6206c239ee5560401616e40b6cc,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525066,Illumina HiSeq 2500 sequencing; GSM3671684: ribosome profiling APP_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671684: ribosome profiling APP_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130403,ribosome profiling APP_2,Illumina HiSeq 2500,SRR8732204,18895655,944782750,SAMN11130403,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671684,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/004/SRR8732204/SRR8732204.fastq.gz,850327508,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/004/SRR8732204/SRR8732204.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/004/SRR8732204/SRR8732204.fastq.gz,3e97e0c316ecd61468f8b226acc7f1e3,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671684_r1,<NA>,GSM3671684,<NA>,ribosome profiling APP_2,<NA>,<NA>,<NA>,<NA>,SRS4491747,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/004/SRR8732204,607648844,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/004/SRR8732204,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/004/SRR8732204,f5445d062e2d980c4960ba1033f2975a,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525067,Illumina HiSeq 2500 sequencing; GSM3671685: ribosome profiling APP_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671685: ribosome profiling APP_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130402,ribosome profiling APP_3,Illumina HiSeq 2500,SRR8732205,20817886,1040894300,SAMN11130402,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671685,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/005/SRR8732205/SRR8732205.fastq.gz,942259892,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/005/SRR8732205/SRR8732205.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/005/SRR8732205/SRR8732205.fastq.gz,e0132c1d413948172dd4eebf14426c15,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671685_r1,<NA>,GSM3671685,<NA>,ribosome profiling APP_3,<NA>,<NA>,<NA>,<NA>,SRS4491748,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/005/SRR8732205,664367870,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/005/SRR8732205,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/005/SRR8732205,8eeab83c6554e29765258ab3bfc21b5d,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525068,Illumina HiSeq 2500 sequencing; GSM3671686: ribosome profiling PSEN_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671686: ribosome profiling PSEN_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130401,ribosome profiling PSEN_1,Illumina HiSeq 2500,SRR8732206,20629961,1031498050,SAMN11130401,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671686,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/006/SRR8732206/SRR8732206.fastq.gz,929755701,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/006/SRR8732206/SRR8732206.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/006/SRR8732206/SRR8732206.fastq.gz,a8876ef5bf8ef9f90ae6b1b5845fc1bd,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671686_r1,<NA>,GSM3671686,<NA>,ribosome profiling PSEN_1,<NA>,<NA>,<NA>,<NA>,SRS4491749,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/006/SRR8732206,658298589,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/006/SRR8732206,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/006/SRR8732206,4c486417a5b6a8f5ab75c3ef954ca0b6,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525069,Illumina HiSeq 2500 sequencing; GSM3671687: ribosome profiling PSEN_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671687: ribosome profiling PSEN_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130400,ribosome profiling PSEN_2,Illumina HiSeq 2500,SRR8732207,20358650,1017932500,SAMN11130400,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671687,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/007/SRR8732207/SRR8732207.fastq.gz,923713369,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/007/SRR8732207/SRR8732207.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/007/SRR8732207/SRR8732207.fastq.gz,59ab811b6d18051e7f0478e1c7ff081a,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671687_r1,<NA>,GSM3671687,<NA>,ribosome profiling PSEN_2,<NA>,<NA>,<NA>,<NA>,SRS4491750,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/007/SRR8732207,650826280,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/007/SRR8732207,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/007/SRR8732207,9cb256e324cec7e6edcab19212ba262f,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525070,Illumina HiSeq 2500 sequencing; GSM3671688: ribosome profiling PSEN_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671688: ribosome profiling PSEN_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130427,ribosome profiling PSEN_3,Illumina HiSeq 2500,SRR8732208,20652398,1032619900,SAMN11130427,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671688,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/008/SRR8732208/SRR8732208.fastq.gz,931565387,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/008/SRR8732208/SRR8732208.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/008/SRR8732208/SRR8732208.fastq.gz,e2a48b065e407e3f087ac4bcb383ab3d,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671688_r1,<NA>,GSM3671688,<NA>,ribosome profiling PSEN_3,<NA>,<NA>,<NA>,<NA>,SRS4491751,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/008/SRR8732208,656100785,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/008/SRR8732208,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/008/SRR8732208,d7e1cd7da3d3ea004af5c9f86b86c950,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525071,Illumina HiSeq 2500 sequencing; GSM3671689: ribosome profiling APP/PSEN1_1; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671689: ribosome profiling APP/PSEN1_1; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130426,ribosome profiling APP/PSEN1_1,Illumina HiSeq 2500,SRR8732209,21629538,1081476900,SAMN11130426,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671689,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/009/SRR8732209/SRR8732209.fastq.gz,973562913,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/009/SRR8732209/SRR8732209.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/009/SRR8732209/SRR8732209.fastq.gz,309c8e1755b2d6777b19b598e69513bb,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671689_r1,<NA>,GSM3671689,<NA>,ribosome profiling APP/PSEN1_1,<NA>,<NA>,<NA>,<NA>,SRS4491752,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/009/SRR8732209,685979532,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/009/SRR8732209,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/009/SRR8732209,b1213c69c084633043c29b297a92cb0f,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525072,Illumina HiSeq 2500 sequencing; GSM3671690: ribosome profiling APP/PSEN1_2; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671690: ribosome profiling APP/PSEN1_2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130425,ribosome profiling APP/PSEN1_2,Illumina HiSeq 2500,SRR8732210,22115725,1105786250,SAMN11130425,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671690,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/000/SRR8732210/SRR8732210.fastq.gz,997588027,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/000/SRR8732210/SRR8732210.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/000/SRR8732210/SRR8732210.fastq.gz,b9814ddfa981960e3df418a6b71119fd,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671690_r1,<NA>,GSM3671690,<NA>,ribosome profiling APP/PSEN1_2,<NA>,<NA>,<NA>,<NA>,SRS4491753,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/000/SRR8732210,703034019,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/000/SRR8732210,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/000/SRR8732210,4563f2a7dd48335fa24c143e073a594d,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA527204,SRX5525073,Illumina HiSeq 2500 sequencing; GSM3671691: ribosome profiling APP/PSEN1_3; Homo sapiens; RNA-Seq,Illumina HiSeq 2500 sequencing; GSM3671691: ribosome profiling APP/PSEN1_3; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN11130424,ribosome profiling APP/PSEN1_3,Illumina HiSeq 2500,SRR8732211,26892978,1344648900,SAMN11130424,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,co-isogenic iPS cells,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3671691,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR873/001/SRR8732211/SRR8732211.fastq.gz,1207490191,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/001/SRR8732211/SRR8732211.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR873/001/SRR8732211/SRR8732211.fastq.gz,6a4dada6c41ee345e71f2927441117da,2019-08-09,2019-08-09,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-08-09,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3671691_r1,<NA>,GSM3671691,<NA>,ribosome profiling APP/PSEN1_3,<NA>,<NA>,<NA>,<NA>,SRS4491754,SRP188505,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR873/001/SRR8732211,849024459,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/001/SRR8732211,ftp.sra.ebi.ac.uk/vol1/srr/SRR873/001/SRR8732211,2efd5c3e5ef81969364146e4fdc26070,<NA>,GSE128344,\"A large panel of isogenic APP and PSEN1 mutant human iPSC neurons reveals shared endosomal abnormalities mediated by APP b-CTFs, not Ab [ribosome profiling]\",<NA>,<NA>,SRA860677,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887326,\"Illumina HiSeq 4000 sequencing; GSM3791723: iPSC ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791723: iPSC ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835522,\"iPSC ribosome profiling, harringtonine-treated\",Illumina HiSeq 4000,SRR9113062,131541396,3743828156,SAMN11835522,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791723,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/002/SRR9113062/SRR9113062.fastq.gz,2819325572,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/002/SRR9113062/SRR9113062.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/002/SRR9113062/SRR9113062.fastq.gz,a4109f5bdfa47194920971dc57fa5e38,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791723_r1,<NA>,GSM3791723,<NA>,\"iPSC ribosome profiling, harringtonine-treated\",<NA>,<NA>,<NA>,<NA>,SRS4809549,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/002/SRR9113062,4847243504,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/002/SRR9113062,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/002/SRR9113062,aace924ef913436c0f5c552291ab3e7e,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887327,\"Illumina HiSeq 4000 sequencing; GSM3791724: Cardiomyocyte ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791724: Cardiomyocyte ribosome profiling, harringtonine-treated; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835521,\"Cardiomyocyte ribosome profiling, harringtonine-treated\",Illumina HiSeq 4000,SRR9113063,105449435,2785265458,SAMN11835521,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC-derived cardiomyocytes,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791724,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/003/SRR9113063/SRR9113063.fastq.gz,2068122512,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/003/SRR9113063/SRR9113063.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/003/SRR9113063/SRR9113063.fastq.gz,0c24e17823d37577b4511278057358bd,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791724_r1,<NA>,GSM3791724,<NA>,\"Cardiomyocyte ribosome profiling, harringtonine-treated\",<NA>,<NA>,<NA>,<NA>,SRS4809550,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/003/SRR9113063,3812417240,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/003/SRR9113063,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/003/SRR9113063,3a71b072d5877ad2e27aade618450d98,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887328,\"Illumina HiSeq 4000 sequencing; GSM3791725: iPSC ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791725: iPSC ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835520,\"iPSC ribosome profiling, no drug treatment, replicate 1\",Illumina HiSeq 4000,SRR9113064,52479474,1453634111,SAMN11835520,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791725,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/004/SRR9113064/SRR9113064.fastq.gz,1200472760,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/004/SRR9113064/SRR9113064.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/004/SRR9113064/SRR9113064.fastq.gz,128a460879286c1e012351e65daa2c9a,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791725_r1,<NA>,GSM3791725,<NA>,\"iPSC ribosome profiling, no drug treatment, replicate 1\",<NA>,<NA>,<NA>,<NA>,SRS4809551,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/004/SRR9113064,1935053980,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/004/SRR9113064,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/004/SRR9113064,adb964bfe39286010282f1617dc7a0bf,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887329,\"Illumina HiSeq 4000 sequencing; GSM3791726: iPSC ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791726: iPSC ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835519,\"iPSC ribosome profiling, no drug treatment, replicate 2\",Illumina HiSeq 4000,SRR9113065,51856183,1508584022,SAMN11835519,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791726,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/005/SRR9113065/SRR9113065.fastq.gz,1159129604,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/005/SRR9113065/SRR9113065.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/005/SRR9113065/SRR9113065.fastq.gz,0169b6fadc244a138b872e3d5813d9f5,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791726_r1,<NA>,GSM3791726,<NA>,\"iPSC ribosome profiling, no drug treatment, replicate 2\",<NA>,<NA>,<NA>,<NA>,SRS4809552,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/005/SRR9113065,1938008028,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/005/SRR9113065,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/005/SRR9113065,adfcfd63660917c85431ba318646218c,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887330,\"Illumina HiSeq 4000 sequencing; GSM3791727: iPSC ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791727: iPSC ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835518,\"iPSC ribosome profiling, no drug treatment, replicate 3\",Illumina HiSeq 4000,SRR9113066,44471589,1280127923,SAMN11835518,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791727,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/006/SRR9113066/SRR9113066.fastq.gz,996140081,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/006/SRR9113066/SRR9113066.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/006/SRR9113066/SRR9113066.fastq.gz,5bc29f308bcfedec67fa034f0a2d32c4,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791727_r1,<NA>,GSM3791727,<NA>,\"iPSC ribosome profiling, no drug treatment, replicate 3\",<NA>,<NA>,<NA>,<NA>,SRS4809553,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/006/SRR9113066,1657553876,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/006/SRR9113066,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/006/SRR9113066,3289b06f445bcfaf6d70cc4c2e127f5b,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887331,\"Illumina HiSeq 4000 sequencing; GSM3791728: Cardiomyocyte ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791728: Cardiomyocyte ribosome profiling, no drug treatment, replicate 1; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835517,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 1\",Illumina HiSeq 4000,SRR9113067,15031439,395105326,SAMN11835517,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC-derived cardiomyocytes,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791728,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/007/SRR9113067/SRR9113067.fastq.gz,313049588,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/007/SRR9113067/SRR9113067.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/007/SRR9113067/SRR9113067.fastq.gz,e05bdfe269c488d6cbe29b625fac2b72,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791728_r1,<NA>,GSM3791728,<NA>,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 1\",<NA>,<NA>,<NA>,<NA>,SRS4809554,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/007/SRR9113067,544812636,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/007/SRR9113067,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/007/SRR9113067,d57c82a462b34fa7d465f5310f6557ee,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887332,\"Illumina HiSeq 4000 sequencing; GSM3791729: Cardiomyocyte ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791729: Cardiomyocyte ribosome profiling, no drug treatment, replicate 2; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835516,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 2\",Illumina HiSeq 4000,SRR9113068,24288824,668239583,SAMN11835516,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC-derived cardiomyocytes,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791729,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/008/SRR9113068/SRR9113068.fastq.gz,515601964,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/008/SRR9113068/SRR9113068.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/008/SRR9113068/SRR9113068.fastq.gz,410f4577175b65f792e74fbdfe4464eb,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791729_r1,<NA>,GSM3791729,<NA>,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 2\",<NA>,<NA>,<NA>,<NA>,SRS4809555,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/008/SRR9113068,901006548,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/008/SRR9113068,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/008/SRR9113068,01b66dfa4ffe30b7172fdbe114309485,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA544411,SRX5887333,\"Illumina HiSeq 4000 sequencing; GSM3791730: Cardiomyocyte ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",\"Illumina HiSeq 4000 sequencing; GSM3791730: Cardiomyocyte ribosome profiling, no drug treatment, replicate 3; Homo sapiens; OTHER\",9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN11835515,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 3\",Illumina HiSeq 4000,SRR9113069,22387751,602037992,SAMN11835515,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,WTC-11,iPSC-derived cardiomyocytes,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM3791730,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR911/009/SRR9113069/SRR9113069.fastq.gz,479768259,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/009/SRR9113069/SRR9113069.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR911/009/SRR9113069/SRR9113069.fastq.gz,05f4a8e9a3404e8c456437affcac58b1,2020-03-23,2020-03-23,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2020-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM3791730_r1,<NA>,GSM3791730,<NA>,\"Cardiomyocyte ribosome profiling, no drug treatment, replicate 3\",<NA>,<NA>,<NA>,<NA>,SRS4809556,SRP199285,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR911/009/SRR9113069,828285308,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/009/SRR9113069,ftp.sra.ebi.ac.uk/vol1/srr/SRR911/009/SRR9113069,72453bd331eb88581b43ad3c4a326443,<NA>,GSE131650,Pervasive functional translation of noncanonical open reading frames,<NA>,<NA>,SRA889795,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035778,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265420,52416789,1560616477,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_42_10_r1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/000/SRR9265420/SRR9265420.fastq.gz,885937108,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/000/SRR9265420/SRR9265420.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/000/SRR9265420/SRR9265420.fastq.gz,5d2c32933e34e85733f3938ac05a1b4c,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_42_10_r1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_42_10.A.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/000/SRR9265420,779145066,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/000/SRR9265420,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/000/SRR9265420,85ce0f39e745a349e3fa9226611be778,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035777,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265421,55952924,1711205789,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_42_10_r2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/001/SRR9265421/SRR9265421.fastq.gz,1011172412,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/001/SRR9265421/SRR9265421.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/001/SRR9265421/SRR9265421.fastq.gz,4c25d78161874c64f6e226ce466141c0,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_42_10_r2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_42_10.B.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/001/SRR9265421,844838455,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/001/SRR9265421,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/001/SRR9265421,eebc74a65f2431a9cfd8bd61b758ae07,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035776,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265422,49583723,1502676985,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_37_30_r1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/002/SRR9265422/SRR9265422.fastq.gz,755059586,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/002/SRR9265422/SRR9265422.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/002/SRR9265422/SRR9265422.fastq.gz,00511d8f505b446890ef09095b2c12c8,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_37_30_r1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_37_30.A.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/002/SRR9265422,722241701,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/002/SRR9265422,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/002/SRR9265422,750dcfbb21d0a552b0f073d3db8a0fd3,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035775,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265423,58906924,1740811245,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_37_30_r2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/003/SRR9265423/SRR9265423.fastq.gz,983590928,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/003/SRR9265423/SRR9265423.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/003/SRR9265423/SRR9265423.fastq.gz,6715169f791fbbb5ea1077a71ba22929,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_37_30_r2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_37_30.C.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/003/SRR9265423,864060628,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/003/SRR9265423,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/003/SRR9265423,0bfb028588122ead8e184e1c94fac545,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035774,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265424,45951630,1310462981,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_37_10_r1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/004/SRR9265424/SRR9265424.fastq.gz,745739787,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/004/SRR9265424/SRR9265424.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/004/SRR9265424/SRR9265424.fastq.gz,c546652a5273f44884984982a8cc1086,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_37_10_r1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_37_10.A.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/004/SRR9265424,639307146,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/004/SRR9265424,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/004/SRR9265424,dc3c285ac2bed46c55c559414af38e31,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035773,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 10min at 37C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265425,47383970,1423177661,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_37_10_r2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/005/SRR9265425/SRR9265425.fastq.gz,915959975,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/005/SRR9265425/SRR9265425.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/005/SRR9265425/SRR9265425.fastq.gz,e2b4f8b604c2ea952a1ddbcea511ba1d,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_37_10_r2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_37_10.B.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/005/SRR9265425,744428874,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/005/SRR9265425,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/005/SRR9265425,1339976371dda6a218d16184f0852d30,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035772,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265426,42590657,1193803088,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_25_0_r2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/006/SRR9265426/SRR9265426.fastq.gz,668402806,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/006/SRR9265426/SRR9265426.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/006/SRR9265426/SRR9265426.fastq.gz,cfd81e7e6d53f7aa52e17fa59ba3fc34,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_25_0_r2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_25_0.B.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/006/SRR9265426,576711694,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/006/SRR9265426,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/006/SRR9265426,793f29678289615ee0d71988be848fa4,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035771,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265427,66588117,2042292918,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_25_0_r3,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/007/SRR9265427/SRR9265427.fastq.gz,1092313594,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/007/SRR9265427/SRR9265427.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/007/SRR9265427/SRR9265427.fastq.gz,6ebc2af98229c07911683558321f212e,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_25_0_r3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_25_0.C.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/007/SRR9265427,1000846817,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/007/SRR9265427,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/007/SRR9265427,42df5648b76f1881c55851a81d3e821b,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035769,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 control sample,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265429,38286437,1148214684,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_25_0_r1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/009/SRR9265429/SRR9265429.fastq.gz,819773428,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/009/SRR9265429/SRR9265429.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/009/SRR9265429/SRR9265429.fastq.gz,03e4eb94af9999e009f7f1dbddcb0219,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_25_0_r1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_25_0.A.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/009/SRR9265429,597402604,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/009/SRR9265429,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/009/SRR9265429,3b0de1d8c09cb833bc716bd9943eeda9,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035759,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265438,56609448,1597658464,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_42_30_r2,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/008/SRR9265438/SRR9265438.fastq.gz,923482443,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/008/SRR9265438/SRR9265438.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/008/SRR9265438/SRR9265438.fastq.gz,b529dfa3c1c8e2724a9c303c03ade8ae,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_42_30_r2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_42_30.B.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/008/SRR9265438,813586309,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/008/SRR9265438,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/008/SRR9265438,43657cd68e2dfe61708b607758815cd6,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA548255,SRX6035757,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,Illumina HiSeq 1500 sequencing; Ribosome profiling of Saccharomyces cerevisiae BY4147 30min at 42C,4932,Saccharomyces cerevisiae,RIP-Seq,TRANSCRIPTOMIC,PCR,SAMN12012146,Saccharomyces cerevisiae BY4147,Illumina HiSeq 1500,SRR9265440,32328045,953362959,SAMN12012146,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SUB5682290,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,RP_42_30_r1,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR926/000/SRR9265440/SRR9265440.fastq.gz,548559267,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/000/SRR9265440/SRR9265440.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR926/000/SRR9265440/SRR9265440.fastq.gz,1a8d05ad4b9bad7a9c29be11f8f12d66,2019-12-24,2019-12-24,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-12-24,<NA>,SINGLE,RP_42_30_r1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HS_42_30.A.fastq,<NA>,yeast BY4147,<NA>,Saccharomyces cerevisiae BY4147,<NA>,<NA>,<NA>,<NA>,SRS4939070,SRP201047,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR926/000/SRR9265440,473574714,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/000/SRR9265440,ftp.sra.ebi.ac.uk/vol1/srr/SRR926/000/SRR9265440,528364240dfb9f82eb5eb98c3419dfe1,BY4147,PRJNA548255,Ribosome Profiling of heat shock response in yeast,<NA>,<NA>,SRA896649,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA213675,SRX329059,Illumina HiSeq 2000 sequencing; GSM1197612: Ribosome profiling rep1-SiControl-RPF C1; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1197612: Ribosome profiling rep1-SiControl-RPF C1; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02297657,Ribosome profiling rep1-SiControl-RPF C1,Illumina HiSeq 2000,SRR944653,29565498,2956549800,SAMN02297657,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1197612,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR944/SRR944653/SRR944653.fastq.gz,1987314068,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944653/SRR944653.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944653/SRR944653.fastq.gz,866ad48be2f16dd9af753789bf3a0640,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1197612_r1,<NA>,GSM1197612,<NA>,Ribosome profiling rep1-SiControl-RPF C1,<NA>,<NA>,<NA>,<NA>,SRS465169,SRP028325,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR944/SRR944653,2052541392,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944653,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944653,3b72d7f2a1e6b544cc73002e733fb23b,<NA>,GSE49339,m6A-dependent regulation of messenger RNA stability,<NA>,<NA>,SRA096240,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA213675,SRX329060,Illumina HiSeq 2000 sequencing; GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq,Illumina HiSeq 2000 sequencing; GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq,9606,Homo sapiens,RNA-Seq,TRANSCRIPTOMIC,cDNA,SAMN02297660,Ribosome profiling rep1-SiControl-input-polyA C2,Illumina HiSeq 2000,SRR944654,62803902,6280390200,SAMN02297660,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1197613,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR944/SRR944654/SRR944654.fastq.gz,4631360454,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944654/SRR944654.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944654/SRR944654.fastq.gz,1a1657ec2cdd4d22024939c5fa81fe6a,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1197613_r1,<NA>,GSM1197613,<NA>,Ribosome profiling rep1-SiControl-input-polyA C2,<NA>,<NA>,<NA>,<NA>,SRS465170,SRP028325,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR944/SRR944654,4393315536,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944654,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944654,fc33f074f28f25a260e673bec07dc861,<NA>,GSE49339,m6A-dependent regulation of messenger RNA stability,<NA>,<NA>,SRA096240,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\nPRJNA213675,SRX329061,Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER,Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER,9606,Homo sapiens,OTHER,TRANSCRIPTOMIC,other,SAMN02297661,Ribosome profiling rep1-SiYTHDF2-RPF C3,Illumina HiSeq 2000,SRR944655,26371551,2637155100,SAMN02297661,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,HeLa,<NA>,GEO,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,false,GSM1197614,<NA>,fasp.sra.ebi.ac.uk:/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz,1734744346,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz,ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz,9eff5a3bdc10579ba50484dead9f6582,2014-04-15,2014-04-15,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,2019-03-23,<NA>,SINGLE,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GSM1197614_r1,<NA>,GSM1197614,<NA>,Ribosome profiling rep1-SiYTHDF2-RPF C3,<NA>,<NA>,<NA>,<NA>,SRS465171,SRP028325,<NA>,<NA>,<NA>,<NA>,<NA>,fasp.sra.ebi.ac.uk:/vol1/srr/SRR944/SRR944655,1817504633,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944655,ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944655,cd15fb0c6c050508ed7c9bb4a6c9f418,<NA>,GSE49339,m6A-dependent regulation of messenger RNA stability,<NA>,<NA>,SRA096240,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>\n"
  },
  {
    "path": "tests/data/test_search/ena_test_verbosity_3.json",
    "content": "[{\"study_accession\": \"PRJEB12126\", \"secondary_study_accession\": \"ERP013565\", \"sample_accession\": \"SAMEA3708907\", \"secondary_sample_accession\": \"ERS1016056\", \"experiment_accession\": \"ERX1264364\", \"run_accession\": \"ERR1190989\", \"submission_accession\": \"ERA542783\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2000\", \"library_name\": \"Sample 1\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"38883498\", \"base_count\": \"1161289538\", \"center_name\": \"University of Cambridge\", \"first_public\": \"2016-02-08\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"study_title\": \"Analysis of coronavirus and infected host-cell gene expression through RNA sequencing and ribosome profiling\", \"study_alias\": \"E-MTAB-4111\", \"experiment_alias\": \"E-MTAB-4111:Sample 1\", \"run_alias\": \"E-MTAB-4111:Sample 1\", \"fastq_bytes\": \"1213693766\", \"fastq_md5\": \"9d44144fc8af59f5e1329bb3948df3d3\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1190989/ERR1190989.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR119/009/ERR1190989/ERR1190989.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR119/009/ERR1190989/ERR1190989.fastq.gz\", \"submitted_bytes\": \"1096661985\", \"submitted_md5\": \"f71b349d9e3b95f7b58fdc09a6cbda07\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190989/sample_1.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR119/ERR1190989/sample_1.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR119/ERR1190989/sample_1.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"919117967\", \"sra_md5\": \"47d9927d4bf377295170ee9084488719\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1190989\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR119/009/ERR1190989\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR119/009/ERR1190989\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-4111:Sample 1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 1\", \"nominal_sdev\": \"\", \"first_created\": \"2015-12-14\", \"sample_description\": \"Protocols: Murine 17 clone 1 (17Cl-1) (Sturman and Takemoto, 1972) and BHK-21 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum (FCS). Recombinant MHV strain A59 (MHV-A59) was derived as previously described (Coley et al., 2005). 17Cl-1 cells (10^7) were plated in 10 cm dishes and, upon reaching 70-80% confluence, were infected with MHV-A59 at a multiplicity of infection (MOI) of 10 PFU/cell (or 200 PFU/cell in the High MOI experiment - samples 37-39) in Hanks balanced salt solution (HBSS) containing 50 mg/ml DEAE-dextran and 0.2% bovine serum albumin (BSA). After 45 min at 37 oC, the inoculum was removed and the cells were incubated in DMEM containing 10% FCS, 100 U/ml penicillin and 100 mg/ml streptomycin at 37 oC until harvest. At the appropriate time point, cells were treated with CHX (Sigma-Aldrich; to 100 g/ml; 2 min), or HAR (LKT laboratories; 2 g/ml, 3 min) then CHX (to 100 g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 g/ml cycloheximide and 25 U/ml TURBOTM DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. 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ZIKV strain Pe243 (ZIKV-PE243) was derived as previously described (Donald et al., 2016). At 24 h p.i., cells were treated with CHX (Sigma-Aldrich; to 100 \\u00b5g/ml; 2 min). Cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 s, transferred to dry ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00baC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to RiboSeq and RNASeq. 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(2016).\", \"accession\": \"SAMEA52785418\", \"bio_material\": \"\", \"cell_line\": \"C6/36\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Analysis of Zika Virus gene expression by Ribosome profiling and RNA sequencing\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"RNA-Seq\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB19678\", \"secondary_study_accession\": \"ERP021735\", \"sample_accession\": \"SAMEA100849168\", \"secondary_sample_accession\": \"ERS1572580\", \"experiment_accession\": \"ERX1918552\", \"run_accession\": \"ERR1856693\", \"submission_accession\": \"ERA827970\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"111880423\", \"base_count\": \"3793356586\", \"center_name\": \"University of Cambridge\", \"first_public\": \"2017-07-25\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_title\": \"Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_alias\": \"E-MTAB-5519\", \"experiment_alias\": \"E-MTAB-5519:Sample 1_s\", \"run_alias\": \"E-MTAB-5519:Sample 1\", \"fastq_bytes\": \"1574781621\", \"fastq_md5\": \"933d015121139cb65f059cd94cc2879c\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/003/ERR1856693/ERR1856693.fastq.gz\", \"submitted_bytes\": \"1297850069\", \"submitted_md5\": \"be77b26802183d016e9a09b954fa9eb9\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856693/sample_1.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856693/sample_1.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856693/sample_1.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"1703931232\", \"sra_md5\": \"912d6dfd0e558ff0d5ecae201894647a\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/003/ERR1856693\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR185/003/ERR1856693\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/003/ERR1856693\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5519:Sample 1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 1\", \"nominal_sdev\": \"\", \"first_created\": \"2017-02-27\", \"sample_description\": \"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 \\u03bcg/ml chloramphenicol and 100 \\u03bcg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 \\u03bcl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 \\u03bcg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4\\u00b0C. 200 \\u03bcl aliquots of cell lysates were treated with 7.5 \\u03bcl RNase 1 (100 units/\\u03bcl) at 28\\u00b0C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4\\u00b0C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 \\u03bcg/ml) for 30 min at 42\\u00b0C. RPFs were recovered by extracting twice with pre-warmed (65\\u00b0C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 \\u03bcg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. The RNA samples ...\", \"accession\": \"SAMEA100849168\", \"bio_material\": \"\", \"cell_line\": \"HEK293\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB19678\", \"secondary_study_accession\": \"ERP021735\", \"sample_accession\": \"SAMEA100849918\", \"secondary_sample_accession\": \"ERS1572581\", \"experiment_accession\": \"ERX1918553\", \"run_accession\": \"ERR1856694\", \"submission_accession\": \"ERA827970\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"58039284\", \"base_count\": \"1693191518\", \"center_name\": \"University of Cambridge\", \"first_public\": \"2017-07-25\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_title\": \"Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_alias\": \"E-MTAB-5519\", \"experiment_alias\": \"E-MTAB-5519:Sample 2_s\", \"run_alias\": \"E-MTAB-5519:Sample 2\", \"fastq_bytes\": \"858424316\", \"fastq_md5\": \"56ac8f6c0af130c4c23e5f0f59b1ae8b\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/004/ERR1856694/ERR1856694.fastq.gz\", \"submitted_bytes\": \"706733223\", \"submitted_md5\": \"ef9aa0bcfbec535ff24d8e5fd039b064\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856694/sample_2.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856694/sample_2.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856694/sample_2.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"831078268\", \"sra_md5\": \"61c1d55cd716a7969ea1a981efe55fd5\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/004/ERR1856694\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR185/004/ERR1856694\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/004/ERR1856694\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5519:Sample 2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 2\", \"nominal_sdev\": \"\", \"first_created\": \"2017-02-27\", \"sample_description\": \"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 \\u03bcg/ml chloramphenicol and 100 \\u03bcg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 \\u03bcl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 \\u03bcg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4\\u00b0C. 200 \\u03bcl aliquots of cell lysates were treated with 7.5 \\u03bcl RNase 1 (100 units/\\u03bcl) at 28\\u00b0C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4\\u00b0C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 \\u03bcg/ml) for 30 min at 42\\u00b0C. RPFs were recovered by extracting twice with pre-warmed (65\\u00b0C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 \\u03bcg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. The RNA samples ...\", \"accession\": \"SAMEA100849918\", \"bio_material\": \"\", \"cell_line\": \"HEK293 PDE12-/-\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB19678\", \"secondary_study_accession\": \"ERP021735\", \"sample_accession\": \"SAMEA100850668\", \"secondary_sample_accession\": \"ERS1572582\", \"experiment_accession\": \"ERX1918554\", \"run_accession\": \"ERR1856695\", \"submission_accession\": \"ERA827970\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"54983210\", \"base_count\": \"1222852079\", \"center_name\": \"University of Cambridge\", \"first_public\": \"2017-07-25\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 500 sequencing; Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_title\": \"Analysis of mitochondrial gene expression with Ribosome Profiling\", \"study_alias\": \"E-MTAB-5519\", \"experiment_alias\": \"E-MTAB-5519:Sample 3_s\", \"run_alias\": \"E-MTAB-5519:Sample 3\", \"fastq_bytes\": \"767654136\", \"fastq_md5\": \"c35c92172d2b9f554b4de63c2304ba2f\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR185/005/ERR1856695/ERR1856695.fastq.gz\", \"submitted_bytes\": \"629809812\", \"submitted_md5\": \"2113d8303e17bf756a6891ecbbaa480b\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856695/sample_3.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR185/ERR1856695/sample_3.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR185/ERR1856695/sample_3.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"652346364\", \"sra_md5\": \"c55c732aa688fae7b85f86928020617d\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/005/ERR1856695\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR185/005/ERR1856695\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR185/005/ERR1856695\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5519:Sample 3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 3\", \"nominal_sdev\": \"\", \"first_created\": \"2017-02-27\", \"sample_description\": \"Protocols: For Ribo-Seq, parental HEK293 and PDE12-/- cells were treated with 100 \\u03bcg/ml chloramphenicol and 100 \\u03bcg/mL cycloheximide for 5 min. Cells were rinsed with 5 ml of ice-cold PBS, the dishes were submerged in a reservoir of liquid nitrogen for 10 s and transferred to dry ice. Cells were lysed in 400 \\u03bcl of lysis buffer (20 mM Tris-HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1 % Triton X-100, 100 \\u03bcg/ml chloramphenicol and cycloheximide). Cells were scraped and lysates clarified by centrifugation for 20 min at 13,000 g at 4\\u00b0C. 200 \\u03bcl aliquots of cell lysates were treated with 7.5 \\u03bcl RNase 1 (100 units/\\u03bcl) at 28\\u00b0C. The reaction was layered onto a 10-30 % sucrose gradient [2ml 10-30% (v/v)] in 50mM Tris-HCl (pH7.2), 20mM Mg(OAc)2, 80mM NH4Cl, 0.1M KCl, 1mM PMSF and centrifuged for 2h 15min at 100,000 gmax at 4\\u00b0C (39,000 rpm, Beckman Coulter TLS-55 rotor) and fractions collected. Subsequently, all fractions containing mitochondrial monosomes, ascertained by western blotting, were pooled and digested with proteinase K (200 \\u03bcg/ml) for 30 min at 42\\u00b0C. RPFs were recovered by extracting twice with pre-warmed (65\\u00b0C) acidic phenol:chloroform and once with chloroform (1:1, v/v, buffered with 10 mM Tris pH 7.5, 0.1 mM EDTA) followed by ethanol precipitation. RPFs (1 \\u03bcg) were separated on 15 % denaturing polyacrylamide gels and RNA species migrating between 25 and 35 nt were harvested. RNA was eluted from the gel slices and ethanol precipitated. 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Samples were ribo-depleted using Ribo-Zero Gold rRNA Removal Kit Yeast (Illumina) with a 4 ug input.   30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\", \"accession\": \"SAMEA104118822\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB21224\", \"secondary_study_accession\": \"ERP023462\", \"sample_accession\": \"SAMEA104118823\", \"secondary_sample_accession\": \"ERS1782716\", \"experiment_accession\": \"ERX2063402\", \"run_accession\": \"ERR2003533\", \"submission_accession\": \"ERA955947\", \"tax_id\": \"4896\", \"scientific_name\": \"Schizosaccharomyces pombe\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 550\", \"library_name\": \"wt.AT.noCHX.mrna.11_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"Inverse rRNA\", \"read_count\": \"18348290\", \"base_count\": \"917414500\", \"center_name\": \"Department of Biochemistry University of Cambridge UK\", \"first_public\": \"2018-02-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_title\": \"Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_alias\": \"E-MTAB-5810\", \"experiment_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.11_s\", \"run_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.11\", \"fastq_bytes\": \"557797042\", \"fastq_md5\": \"72d626dc55ffe8a99a45b0fce9e9de1a\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/003/ERR2003533/ERR2003533.fastq.gz\", \"submitted_bytes\": \"504798817\", \"submitted_md5\": \"332d3d0d200fe86838b2670ce40ea5f9\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003533/mRNAmCpAe23_SLX-12423_NXHT028_TACAGGAT.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"371473051\", \"sra_md5\": \"9f5750bd2a6ecb3f75ed5629e97425f4\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003533\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR200/003/ERR2003533\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/003/ERR2003533\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.11\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"wt.AT.noCHX.mrna.11\", \"nominal_sdev\": \"\", \"first_created\": \"2017-06-09\", \"sample_description\": \"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\", \"accession\": \"SAMEA104118823\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB21224\", \"secondary_study_accession\": \"ERP023462\", \"sample_accession\": \"SAMEA104118824\", \"secondary_sample_accession\": \"ERS1782717\", \"experiment_accession\": \"ERX2063403\", \"run_accession\": \"ERR2003534\", \"submission_accession\": \"ERA955947\", \"tax_id\": \"4896\", \"scientific_name\": \"Schizosaccharomyces pombe\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 550\", \"library_name\": \"wt.AT.noCHX.mrna.13_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"Inverse rRNA\", \"read_count\": \"27306569\", \"base_count\": \"1365328450\", \"center_name\": \"Department of Biochemistry University of Cambridge UK\", \"first_public\": \"2018-02-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_title\": \"Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_alias\": \"E-MTAB-5810\", \"experiment_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.13_s\", \"run_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.13\", \"fastq_bytes\": \"985937947\", \"fastq_md5\": \"0cc70783f4f8898040cff08095e2acb0\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/004/ERR2003534/ERR2003534.fastq.gz\", \"submitted_bytes\": \"931904188\", \"submitted_md5\": \"ea2dcf642b3f3321cf4b35251399c051\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003534/mrna_pAT_mCHX_exp26_SLX-13147_RPI_GTAAGGTG.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"612489209\", \"sra_md5\": \"2640c7ef78636539ac882aa5f02e322a\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003534\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR200/004/ERR2003534\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/004/ERR2003534\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5810:wt.AT.noCHX.mrna.13\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"wt.AT.noCHX.mrna.13\", \"nominal_sdev\": \"\", \"first_created\": \"2017-06-09\", \"sample_description\": \"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. Methods Enzymology 194: 795). 30 ng of ribo-depleted RNA was used as starting material for the NEXTflex Rapid Directional qRNA-Seq Kit (Bioo Scientific).\", \"accession\": \"SAMEA104118824\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB21224\", \"secondary_study_accession\": \"ERP023462\", \"sample_accession\": \"SAMEA104118825\", \"secondary_sample_accession\": \"ERS1782718\", \"experiment_accession\": \"ERX2063404\", \"run_accession\": \"ERR2003535\", \"submission_accession\": \"ERA955947\", \"tax_id\": \"4896\", \"scientific_name\": \"Schizosaccharomyces pombe\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 550\", \"library_name\": \"wt.AT.noCHX.ribo.11_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"unspecified\", \"read_count\": \"119503388\", \"base_count\": \"5975169400\", \"center_name\": \"Department of Biochemistry University of Cambridge UK\", \"first_public\": \"2018-02-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"NextSeq 550 sequencing; Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_title\": \"Ribosome profiling and parallel RNA-seq of S. pombe cells subject to amino acid starvation\", \"study_alias\": \"E-MTAB-5810\", \"experiment_alias\": \"E-MTAB-5810:wt.AT.noCHX.ribo.11_s\", \"run_alias\": \"E-MTAB-5810:wt.AT.noCHX.ribo.11\", \"fastq_bytes\": \"3043126397\", \"fastq_md5\": \"402f77beac3bc9923185ed7fcd2acf59\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR200/005/ERR2003535/ERR2003535.fastq.gz\", \"submitted_bytes\": \"2667502124\", \"submitted_md5\": \"27966036d32945f3c6da7f60a43951fd\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR200/ERR2003535/RPFmCpATe23_SLX-12983.RPI27.HGLNNBBXX.s_8.r_1.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"2287012468\", \"sra_md5\": \"0dbe31c34a7870da7d0de1f343064e77\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003535\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR200/005/ERR2003535\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR200/005/ERR2003535\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-5810:wt.AT.noCHX.ribo.11\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"wt.AT.noCHX.ribo.11\", \"nominal_sdev\": \"\", \"first_created\": \"2017-06-09\", \"sample_description\": \"Protocols: Cells were grown at 32C in EMM2 (Moreno et al. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939570\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939571\", \"secondary_sample_accession\": \"ERS2758354\", \"experiment_accession\": \"ERX2819163\", \"run_accession\": \"ERR2812332\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_brain_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_brain_rna_2_s\", \"run_alias\": \"E-MTAB-7247:chicken_brain_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2748702300\", \"submitted_md5\": \"ece46e4fb0c1f26316e1190e0f039896\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812332/chicken_brain_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_brain_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_brain_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939571\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939572\", \"secondary_sample_accession\": \"ERS2758355\", \"experiment_accession\": \"ERX2819164\", \"run_accession\": \"ERR2812333\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_brain_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_brain_rna_3_s\", \"run_alias\": \"E-MTAB-7247:chicken_brain_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2390768468\", \"submitted_md5\": \"41909d0ff65f49c611554067043568d4\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812333/chicken_brain_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_brain_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_brain_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939576\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939577\", \"secondary_sample_accession\": \"ERS2758360\", \"experiment_accession\": \"ERX2819169\", \"run_accession\": \"ERR2812338\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_rna_2_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4788127159\", \"submitted_md5\": \"e5a61276d9336ebf8a826388ff1da8e2\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812338/chicken_liver_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939577\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939578\", \"secondary_sample_accession\": \"ERS2758361\", \"experiment_accession\": \"ERX2819170\", \"run_accession\": \"ERR2812339\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_rna_3_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5661008289\", \"submitted_md5\": \"b11fb5c6ddcdd86e98ec5cd6df542303\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812339/chicken_liver_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939578\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939579\", \"secondary_sample_accession\": \"ERS2758362\", \"experiment_accession\": \"ERX2819171\", \"run_accession\": \"ERR2812340\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_testis_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"176588839\", \"base_count\": \"9006030789\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_testis_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:chicken_testis_ribo_1\", \"fastq_bytes\": \"4778699566\", \"fastq_md5\": \"eeda42d3c6b84f08ee63f02681351689\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812340/ERR2812340.fastq.gz\", \"submitted_bytes\": \"4330023930\", \"submitted_md5\": \"ce27f54856f3da8b07d80f06e8749ca9\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812340/chicken_testis_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"3866865953\", \"sra_md5\": \"1ffdf77ed979d88a6d171adfe42784e9\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812340\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR281/000/ERR2812340\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812340\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_testis_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_testis_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939579\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939580\", \"secondary_sample_accession\": \"ERS2758363\", \"experiment_accession\": \"ERX2819172\", \"run_accession\": \"ERR2812341\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_testis_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_testis_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:chicken_testis_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2675433665\", \"submitted_md5\": \"ebe921efe57639961063143d7f7bfad4\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812341/chicken_testis_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_testis_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_testis_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939582\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939583\", \"secondary_sample_accession\": \"ERS2758366\", \"experiment_accession\": \"ERX2819175\", \"run_accession\": \"ERR2812344\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:chicken_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2397183306\", \"submitted_md5\": \"ac0ff7868293955592f39fc0bf728333\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812344/chicken_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939583\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939584\", \"secondary_sample_accession\": \"ERS2758367\", \"experiment_accession\": \"ERX2819176\", \"run_accession\": \"ERR2812345\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_testis_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_testis_rna_3_s\", \"run_alias\": \"E-MTAB-7247:chicken_testis_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3304972131\", \"submitted_md5\": \"cac0a9de52b09dae17b40ce3f5ea7bcf\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812345/chicken_testis_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_testis_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_testis_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939584\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939585\", \"secondary_sample_accession\": \"ERS2758368\", \"experiment_accession\": \"ERX2819177\", \"run_accession\": \"ERR2812346\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:human_brain_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3178570176\", \"submitted_md5\": \"c09d7a3e32afc5148df5f9cfcb437b7e\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812346/human_brain_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939585\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939586\", \"secondary_sample_accession\": \"ERS2758369\", \"experiment_accession\": \"ERX2819178\", \"run_accession\": \"ERR2812347\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:human_brain_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3570312065\", \"submitted_md5\": \"17bca2a5f61b881069d68a9cee9e42c2\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812347/human_brain_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939586\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939587\", \"secondary_sample_accession\": \"ERS2758370\", \"experiment_accession\": \"ERX2819179\", \"run_accession\": \"ERR2812348\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:human_brain_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2884466964\", \"submitted_md5\": \"eaaac9d14663b57b3470a3fa0ab3f8be\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812348/human_brain_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939587\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939588\", \"secondary_sample_accession\": \"ERS2758371\", \"experiment_accession\": \"ERX2819180\", \"run_accession\": \"ERR2812349\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_rna_1_s\", \"run_alias\": \"E-MTAB-7247:human_brain_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4721884572\", \"submitted_md5\": \"8d599b2223fc1095bd750c810bd95576\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812349/human_brain_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939588\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939589\", \"secondary_sample_accession\": \"ERS2758372\", \"experiment_accession\": \"ERX2819181\", \"run_accession\": \"ERR2812350\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_rna_2_s\", \"run_alias\": \"E-MTAB-7247:human_brain_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6561145490\", \"submitted_md5\": \"4f4fd329cdbfbf70612be93369865674\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812350/human_brain_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939589\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939590\", \"secondary_sample_accession\": \"ERS2758373\", \"experiment_accession\": \"ERX2819182\", \"run_accession\": \"ERR2812351\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_brain_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_brain_rna_3_s\", \"run_alias\": \"E-MTAB-7247:human_brain_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6741967887\", \"submitted_md5\": \"4bcbea53a6d3911f9ba22d7d505241ca\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812351/human_brain_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_brain_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_brain_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939590\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939591\", \"secondary_sample_accession\": \"ERS2758374\", \"experiment_accession\": \"ERX2819183\", \"run_accession\": \"ERR2812352\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:human_liver_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1868149033\", \"submitted_md5\": \"2e8522bb5952ff42279ad028d4e2dc41\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812352/human_liver_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939591\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939592\", \"secondary_sample_accession\": \"ERS2758375\", \"experiment_accession\": \"ERX2819184\", \"run_accession\": \"ERR2812353\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:human_liver_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3264470178\", \"submitted_md5\": \"fc90d8777eebbed01a41c7ea7f982302\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812353/human_liver_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939592\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939593\", \"secondary_sample_accession\": \"ERS2758376\", \"experiment_accession\": \"ERX2819185\", \"run_accession\": \"ERR2812354\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:human_liver_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5276013267\", \"submitted_md5\": \"ceb77d5ff75ea57ba00cea639dce920c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812354/human_liver_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939593\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"female\", \"submitted_sex\": \"female\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939594\", \"secondary_sample_accession\": \"ERS2758377\", \"experiment_accession\": \"ERX2819186\", \"run_accession\": \"ERR2812355\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_rna_1_s\", \"run_alias\": \"E-MTAB-7247:human_liver_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"7369874634\", \"submitted_md5\": \"aaaa91705bf59abba98d59bff4780403\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812355/human_liver_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939594\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939595\", \"secondary_sample_accession\": \"ERS2758378\", \"experiment_accession\": \"ERX2819187\", \"run_accession\": \"ERR2812356\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_rna_2_s\", \"run_alias\": \"E-MTAB-7247:human_liver_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6853412150\", \"submitted_md5\": \"8fcdcc6b40a0e34d8d947a53ce4e9499\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812356/human_liver_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939595\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939596\", \"secondary_sample_accession\": \"ERS2758379\", \"experiment_accession\": \"ERX2819188\", \"run_accession\": \"ERR2812357\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_liver_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_liver_rna_3_s\", \"run_alias\": \"E-MTAB-7247:human_liver_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5259012589\", \"submitted_md5\": \"9ab36f8211b18b238f45b523325035c2\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812357/human_liver_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_liver_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_liver_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939596\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"female\", \"submitted_sex\": \"female\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939597\", \"secondary_sample_accession\": \"ERS2758380\", \"experiment_accession\": \"ERX2819189\", \"run_accession\": \"ERR2812358\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:human_testis_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4667214891\", \"submitted_md5\": \"b087df97b018689a2110898cfd1b7d33\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812358/human_testis_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939597\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939598\", \"secondary_sample_accession\": \"ERS2758381\", \"experiment_accession\": \"ERX2819190\", \"run_accession\": \"ERR2812359\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:human_testis_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3347099828\", \"submitted_md5\": \"32ca5adcbb4640a4daab2130c6087785\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812359/human_testis_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939598\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939599\", \"secondary_sample_accession\": \"ERS2758382\", \"experiment_accession\": \"ERX2819191\", \"run_accession\": \"ERR2812360\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:human_testis_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5917939009\", \"submitted_md5\": \"589e94f25f6f844e4a41e99c36f42684\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812360/human_testis_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939599\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939600\", \"secondary_sample_accession\": \"ERS2758383\", \"experiment_accession\": \"ERX2819192\", \"run_accession\": \"ERR2812361\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_rna_1_s\", \"run_alias\": \"E-MTAB-7247:human_testis_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2247251094\", \"submitted_md5\": \"1ab7f2e9de9d3abba340c7ed43ab6b50\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812361/human_testis_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939600\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939601\", \"secondary_sample_accession\": \"ERS2758384\", \"experiment_accession\": \"ERX2819193\", \"run_accession\": \"ERR2812362\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:human_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"8308614348\", \"submitted_md5\": \"afbcc7d1264a969e9fe19aae93d005c5\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812362/human_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939601\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939602\", \"secondary_sample_accession\": \"ERS2758385\", \"experiment_accession\": \"ERX2819194\", \"run_accession\": \"ERR2812363\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"human_testis_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:human_testis_rna_3_s\", \"run_alias\": \"E-MTAB-7247:human_testis_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6436821091\", \"submitted_md5\": \"39186c63fdcef5f6d680369d55f0da65\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812363/human_testis_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:human_testis_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"human_testis_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939602\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939603\", \"secondary_sample_accession\": \"ERS2758386\", \"experiment_accession\": \"ERX2819195\", \"run_accession\": \"ERR2812364\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2011776255\", \"submitted_md5\": \"a5d4cd58192a9f2d63778f09a430c3fd\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812364/macaque_brain_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939603\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939604\", \"secondary_sample_accession\": \"ERS2758387\", \"experiment_accession\": \"ERX2819196\", \"run_accession\": \"ERR2812365\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1811989107\", \"submitted_md5\": \"40061c21dae7ec6b454b9fb70de595e6\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812365/macaque_brain_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939604\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939605\", \"secondary_sample_accession\": \"ERS2758388\", \"experiment_accession\": \"ERX2819197\", \"run_accession\": \"ERR2812366\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1457293319\", \"submitted_md5\": \"09cfcf5ce35d1a7a599a201f2ef87b9e\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812366/macaque_brain_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939605\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939606\", \"secondary_sample_accession\": \"ERS2758389\", \"experiment_accession\": \"ERX2819198\", \"run_accession\": \"ERR2812367\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_rna_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4177020682\", \"submitted_md5\": \"78b971c44621208b5ffe3a9ba8187960\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812367/macaque_brain_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939606\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939607\", \"secondary_sample_accession\": \"ERS2758390\", \"experiment_accession\": \"ERX2819199\", \"run_accession\": \"ERR2812368\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_rna_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3480059130\", \"submitted_md5\": \"c58679acb470ddebeaca55b27266c0c9\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812368/macaque_brain_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939607\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939608\", \"secondary_sample_accession\": \"ERS2758391\", \"experiment_accession\": \"ERX2819200\", \"run_accession\": \"ERR2812369\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_brain_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_brain_rna_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_brain_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5377995284\", \"submitted_md5\": \"6c1c0432d7a4407b1fad3fc450f1cace\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812369/macaque_brain_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_brain_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_brain_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939608\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939609\", \"secondary_sample_accession\": \"ERS2758392\", \"experiment_accession\": \"ERX2819201\", \"run_accession\": \"ERR2812370\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1516435228\", \"submitted_md5\": \"0c202649daa808f1fa5121d33eb82586\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812370/macaque_liver_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939609\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939610\", \"secondary_sample_accession\": \"ERS2758393\", \"experiment_accession\": \"ERX2819202\", \"run_accession\": \"ERR2812371\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4387128178\", \"submitted_md5\": \"dc13d21ab0d2da8bb6421183ea940cc8\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812371/macaque_liver_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939610\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939611\", \"secondary_sample_accession\": \"ERS2758394\", \"experiment_accession\": \"ERX2819203\", \"run_accession\": \"ERR2812372\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1781413198\", \"submitted_md5\": \"7e3f4bc0d47d5ec49db234fd1497ff78\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812372/macaque_liver_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939611\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939612\", \"secondary_sample_accession\": \"ERS2758395\", \"experiment_accession\": \"ERX2819204\", \"run_accession\": \"ERR2812373\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_rna_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3222326391\", \"submitted_md5\": \"49f5c704344ca8284a05a933f12e8955\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812373/macaque_liver_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939612\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939613\", \"secondary_sample_accession\": \"ERS2758396\", \"experiment_accession\": \"ERX2819205\", \"run_accession\": \"ERR2812374\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_rna_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4425994878\", \"submitted_md5\": \"c4f65cf62f5b9728fa7f68f78f9ae8bc\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812374/macaque_liver_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939613\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939614\", \"secondary_sample_accession\": \"ERS2758397\", \"experiment_accession\": \"ERX2819206\", \"run_accession\": \"ERR2812375\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_liver_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_liver_rna_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_liver_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5410031650\", \"submitted_md5\": \"c42f6231de35259ebe5e4186440d60e2\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812375/macaque_liver_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_liver_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_liver_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939614\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939615\", \"secondary_sample_accession\": \"ERS2758398\", \"experiment_accession\": \"ERX2819207\", \"run_accession\": \"ERR2812376\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3581301244\", \"submitted_md5\": \"803e8058e13b4099b977fe8a93622b1c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812376/macaque_testis_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939615\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939616\", \"secondary_sample_accession\": \"ERS2758399\", \"experiment_accession\": \"ERX2819208\", \"run_accession\": \"ERR2812377\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1894421321\", \"submitted_md5\": \"a60d6a26765570160840e000e5e0d9d8\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812377/macaque_testis_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939616\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939617\", \"secondary_sample_accession\": \"ERS2758400\", \"experiment_accession\": \"ERX2819209\", \"run_accession\": \"ERR2812378\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3972316269\", \"submitted_md5\": \"f74594f0722d4cb387f98f5760e54dee\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812378/macaque_testis_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939617\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939618\", \"secondary_sample_accession\": \"ERS2758401\", \"experiment_accession\": \"ERX2819210\", \"run_accession\": \"ERR2812379\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_rna_1_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1691666019\", \"submitted_md5\": \"f22c403a21df510348e7b6b0a07a69bd\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812379/macaque_testis_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939618\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939619\", \"secondary_sample_accession\": \"ERS2758402\", \"experiment_accession\": \"ERX2819211\", \"run_accession\": \"ERR2812380\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2350440132\", \"submitted_md5\": \"194e8209b559d614a81e9c37d7f0b94a\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812380/macaque_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939619\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939620\", \"secondary_sample_accession\": \"ERS2758403\", \"experiment_accession\": \"ERX2819212\", \"run_accession\": \"ERR2812381\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9544\", \"scientific_name\": \"Macaca mulatta\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"macaque_testis_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:macaque_testis_rna_3_s\", \"run_alias\": \"E-MTAB-7247:macaque_testis_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1670149927\", \"submitted_md5\": \"3951de9e0a7c3736837243b496c5b266\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812381/macaque_testis_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:macaque_testis_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"macaque_testis_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939624\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939625\", \"secondary_sample_accession\": \"ERS2758408\", \"experiment_accession\": \"ERX2819217\", \"run_accession\": \"ERR2812386\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_brain_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_brain_rna_2_s\", \"run_alias\": \"E-MTAB-7247:mouse_brain_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3436704554\", \"submitted_md5\": \"178001a65a52da3d2ee4e1818fb7ffbe\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812386/mouse_brain_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_brain_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_brain_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939625\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939626\", \"secondary_sample_accession\": \"ERS2758409\", \"experiment_accession\": \"ERX2819218\", \"run_accession\": \"ERR2812387\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_brain_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_brain_rna_3_s\", \"run_alias\": \"E-MTAB-7247:mouse_brain_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3045904505\", \"submitted_md5\": \"6091d3140113ff401a628c5548213b2e\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812387/mouse_brain_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_brain_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_brain_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_liver_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:mouse_liver_ribo_1\", \"fastq_bytes\": \"4120884605\", \"fastq_md5\": \"d7ee0c710835eab39953d000e29d660b\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/008/ERR2812388/ERR2812388.fastq.gz\", \"submitted_bytes\": \"3764801571\", \"submitted_md5\": \"c02a71475beeab62650f5214a4a9f3d2\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812388/mouse_liver_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"4354094998\", \"sra_md5\": \"499e1a64e500dfd99ef2f9863527dc91\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812388\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR281/008/ERR2812388\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/008/ERR2812388\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_liver_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_liver_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939627\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939628\", \"secondary_sample_accession\": \"ERS2758411\", \"experiment_accession\": \"ERX2819220\", \"run_accession\": \"ERR2812389\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_liver_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_liver_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:mouse_liver_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2646508598\", \"submitted_md5\": \"70fe0d8eedc01568380d083b8ecadfb7\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812389/mouse_liver_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_liver_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_liver_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939636\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939637\", \"secondary_sample_accession\": \"ERS2758420\", \"experiment_accession\": \"ERX2819229\", \"run_accession\": \"ERR2812398\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:mouse_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1359523458\", \"submitted_md5\": \"ee7ebe08dcc7532cd8f18ced4cf238ef\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812398/mouse_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:opossum_brain_ribo_1_s\", \"run_alias\": \"E-MTAB-7247:opossum_brain_ribo_1\", \"fastq_bytes\": \"2896842733\", \"fastq_md5\": \"48578d41b2530e38ea2f5f3a22f8366f\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR281/000/ERR2812400/ERR2812400.fastq.gz\", \"submitted_bytes\": \"2631349148\", \"submitted_md5\": \"6d40acca565af608d5a6ba306195c40e\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812400/opossum_brain_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"2203212513\", \"sra_md5\": \"c3f186a687b96b2db76a7958cc157112\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812400\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR281/000/ERR2812400\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR281/000/ERR2812400\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:opossum_brain_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"opossum_brain_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939639\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939640\", \"secondary_sample_accession\": \"ERS2758423\", \"experiment_accession\": \"ERX2819232\", \"run_accession\": \"ERR2812401\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"13616\", \"scientific_name\": \"Monodelphis domestica\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"opossum_brain_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:opossum_brain_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:opossum_brain_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2731686040\", \"submitted_md5\": \"2eb9a510377ae631471d1aebfdbab052\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812401/opossum_brain_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:opossum_brain_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"opossum_brain_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939648\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939649\", \"secondary_sample_accession\": \"ERS2758432\", \"experiment_accession\": \"ERX2819241\", \"run_accession\": \"ERR2812410\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"13616\", \"scientific_name\": \"Monodelphis domestica\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"opossum_liver_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:opossum_liver_rna_2_s\", \"run_alias\": \"E-MTAB-7247:opossum_liver_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1740757015\", \"submitted_md5\": \"8409e903ea2ab751c72c297fc2663b66\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812410/opossum_liver_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:opossum_liver_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"opossum_liver_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939649\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939650\", \"secondary_sample_accession\": \"ERS2758433\", \"experiment_accession\": \"ERX2819242\", \"run_accession\": \"ERR2812411\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"13616\", \"scientific_name\": \"Monodelphis domestica\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"opossum_liver_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:opossum_liver_rna_3_s\", \"run_alias\": \"E-MTAB-7247:opossum_liver_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6260439467\", \"submitted_md5\": \"8d2cbed3ef07888f329d87ead01bfeea\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812411/opossum_liver_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:opossum_liver_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"opossum_liver_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939654\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939655\", \"secondary_sample_accession\": \"ERS2758438\", \"experiment_accession\": \"ERX2819247\", \"run_accession\": \"ERR2812416\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"13616\", \"scientific_name\": \"Monodelphis domestica\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"opossum_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:opossum_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:opossum_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"6033876618\", \"submitted_md5\": \"5ece787e1627d328402e8edd3511b5be\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812416/opossum_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:opossum_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"opossum_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939669\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939670\", \"secondary_sample_accession\": \"ERS2758453\", \"experiment_accession\": \"ERX2819262\", \"run_accession\": \"ERR2812431\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9258\", \"scientific_name\": \"Ornithorhynchus anatinus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"platypus_testis_ribo_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:platypus_testis_ribo_2_s\", \"run_alias\": \"E-MTAB-7247:platypus_testis_ribo_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"1928065426\", \"submitted_md5\": \"72a11ea0839c1fc0f1b538c8a9ba6141\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812431/platypus_testis_ribo_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:platypus_testis_ribo_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"platypus_testis_ribo_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939670\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939671\", \"secondary_sample_accession\": \"ERS2758454\", \"experiment_accession\": \"ERX2819263\", \"run_accession\": \"ERR2812432\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9258\", \"scientific_name\": \"Ornithorhynchus anatinus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"platypus_testis_ribo_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:platypus_testis_ribo_3_s\", \"run_alias\": \"E-MTAB-7247:platypus_testis_ribo_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3217635589\", \"submitted_md5\": \"95e8e4d249457906497aa6f5827461c1\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812432/platypus_testis_ribo_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:platypus_testis_ribo_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"platypus_testis_ribo_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939671\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939672\", \"secondary_sample_accession\": \"ERS2758455\", \"experiment_accession\": \"ERX2819264\", \"run_accession\": \"ERR2812433\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9258\", \"scientific_name\": \"Ornithorhynchus anatinus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"platypus_testis_rna_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:platypus_testis_rna_1_s\", \"run_alias\": \"E-MTAB-7247:platypus_testis_rna_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"10246659465\", \"submitted_md5\": \"c4151da64cc42a79909f6011024c8987\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812433/platypus_testis_rna_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:platypus_testis_rna_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"platypus_testis_rna_1\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939672\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939673\", \"secondary_sample_accession\": \"ERS2758456\", \"experiment_accession\": \"ERX2819265\", \"run_accession\": \"ERR2812434\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9258\", \"scientific_name\": \"Ornithorhynchus anatinus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"platypus_testis_rna_2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:platypus_testis_rna_2_s\", \"run_alias\": \"E-MTAB-7247:platypus_testis_rna_2\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2294781664\", \"submitted_md5\": \"6ed13b6ee75b15f2432b05e278d3c2ba\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812434/platypus_testis_rna_2.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:platypus_testis_rna_2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"platypus_testis_rna_2\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939673\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939674\", \"secondary_sample_accession\": \"ERS2758457\", \"experiment_accession\": \"ERX2819266\", \"run_accession\": \"ERR2812435\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9258\", \"scientific_name\": \"Ornithorhynchus anatinus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"platypus_testis_rna_3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:platypus_testis_rna_3_s\", \"run_alias\": \"E-MTAB-7247:platypus_testis_rna_3\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3010307584\", \"submitted_md5\": \"5e675b165b28f1c7d7beadbc00fe37be\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812435/platypus_testis_rna_3.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:platypus_testis_rna_3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"platypus_testis_rna_3\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939674\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939675\", \"secondary_sample_accession\": \"ERS2758458\", \"experiment_accession\": \"ERX2819267\", \"run_accession\": \"ERR2812436\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_ribo_4_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_ribo_4_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_ribo_4\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"5761719962\", \"submitted_md5\": \"19ddd1d47cc6f9683457fff690897892\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812436/chicken_liver_ribo_4.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_ribo_4\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_ribo_4\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939675\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939676\", \"secondary_sample_accession\": \"ERS2758459\", \"experiment_accession\": \"ERX2819268\", \"run_accession\": \"ERR2812437\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_ribo_5_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_ribo_5_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_ribo_5\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"3322471257\", \"submitted_md5\": \"b3b70eed5086b227da29876f406bfe36\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812437/chicken_liver_ribo_5.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_ribo_5\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_ribo_5\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939676\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939677\", \"secondary_sample_accession\": \"ERS2758460\", \"experiment_accession\": \"ERX2819269\", \"run_accession\": \"ERR2812438\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_rna_4_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_rna_4_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_rna_4\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4263275947\", \"submitted_md5\": \"5f8d62d7bbb891a7428253ac3084e3ea\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812438/chicken_liver_rna_4.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_rna_4\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_rna_4\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939677\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939678\", \"secondary_sample_accession\": \"ERS2758461\", \"experiment_accession\": \"ERX2819270\", \"run_accession\": \"ERR2812439\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"chicken_liver_rna_5_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:chicken_liver_rna_5_s\", \"run_alias\": \"E-MTAB-7247:chicken_liver_rna_5\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4426260164\", \"submitted_md5\": \"f9cd02435e377b1b9cd263bbb5aeac7c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812439/chicken_liver_rna_5.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:chicken_liver_rna_5\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"chicken_liver_rna_5\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939678\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939679\", \"secondary_sample_accession\": \"ERS2758462\", \"experiment_accession\": \"ERX2819271\", \"run_accession\": \"ERR2812440\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_liver_ribo_4_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_liver_ribo_4_s\", \"run_alias\": \"E-MTAB-7247:mouse_liver_ribo_4\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2462737950\", \"submitted_md5\": \"3656cdc24eb21cc0ee4708fe53e6c65a\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812440/mouse_liver_ribo_4.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_liver_ribo_4\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_liver_ribo_4\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. Specifically, frozen tissues were treate\", \"accession\": \"SAMEA4939679\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"male\", \"submitted_sex\": \"male\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA4939680\", \"secondary_sample_accession\": \"ERS2758463\", \"experiment_accession\": \"ERX2819272\", \"run_accession\": \"ERR2812441\", \"submission_accession\": \"ERA1612101\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_liver_ribo_5_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-10-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-7247:mouse_liver_ribo_5_s\", \"run_alias\": \"E-MTAB-7247:mouse_liver_ribo_5\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"2512150870\", \"submitted_md5\": \"1ee615f1a7eefdc3c11714f3becc73a7\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR281/ERR2812441/mouse_liver_ribo_5.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7247:mouse_liver_ribo_5\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_liver_ribo_5\", \"nominal_sdev\": \"\", \"first_created\": \"2018-09-26\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red jungle fowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). The Ingolia 2012 protocol has been implemented in the TruSeq Ribo Profile kit (Illumina), which was used in our study. 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Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1\\u03b2 (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  The SW1353 chondrosarcoma cell line (ATCC HTB-94) was cultured in Dulbecco\\u2019s Modified Eagles Medium (DMEM, ThermoFisher Scientific, 31885023) containing 10% Foetal Bovine Serum (FBS, Sigma, F7524), 100 units/ml penicillin-streptomycin (Gibco, 15140122) and 5 \\u00b5g /ml amphotericin B (Gibco, 15290018), cultured at 37 \\u00b0C in a 5% CO2 environment. Serum was withdrawn when the cells had reached ~80% confluence and then 24 hours later the cells were treated with 10 ng/ml IL-1\\u03b2 (Sigma, I9401) for 3 and 24 hours (3x 175cm2 flasks per time point, n=3).  Ribosome profiling was carried out similar to the method described by Ingolia et al. (64), modified with the use of the ARTseq (Mammalian) Ribosome Profiling Kit (Epicentre, RPHMR12126). 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To harvest cells for ribosome profiling, cell culture media was removed and cells were washed with ice-cold PBS containing 0.1 mg/ml cycloheximide (Millipore UK Ltd, 239763). 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Cultured at 20 or 30 degrees Celsius in 750 ml of synthetic complete medium until OD600=0.6 TRI Reagent (AM9738, ThermoFisher) was used to extract the RNA, followed by clean-up using RNA Clean &amp; Concentrator -25 Kit (Zymo Research).  RNA-Seq libraries were constructed using ScriptSeq Complete Gold Yeast Kit (Epicentre). Ribo-Seq libraries were prepared essentially as per Ingolia and colleagues, NatMeth 2012 (PMID: 22836135) with modifications on rRNA removal (Ribo-Zero Gold rRNA Removal Kit -Yeast) and sample purification procedures between enzymatic steps (RNA Clean &amp; Concentrator -5 Kit).\", \"accession\": \"SAMEA5417326\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Ribosome profiling of NEW1 knock-out as well as the isogenic wild type strain of Saccharomyces cerevisiae. 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CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1\\u2009hour incubation at 37\\u2009\\u00b0C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle\\u2019s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20\\u2009mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2\\u2009mM L-glutamine, 250\\u2009U/ml nystatin, 100\\u2009U/ml penicillin, and 100\\u2009U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 \\u00b5g/ml) and the cells incubated for 2 min at 37 \\u00b0C before rinsing with 5 ml of ice-cold PBS containing CHX (100 \\u00b5g/ml). Subsequently, dishes were incubated on ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00b0C, the supernatants recovered and stor...\", \"accession\": \"SAMEA5563290\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32121\", \"secondary_study_accession\": \"ERP114760\", \"sample_accession\": \"SAMEA5563291\", \"secondary_sample_accession\": \"ERS3365321\", \"experiment_accession\": \"ERX3303390\", \"run_accession\": \"ERR3276517\", \"submission_accession\": \"ERA1826088\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 5_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"26947157\", \"base_count\": \"1513258341\", \"center_name\": \"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\", \"first_public\": \"2019-06-18\", \"last_updated\": \"2019-04-11\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"study_title\": \"Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"study_alias\": \"E-MTAB-7849\", \"experiment_alias\": \"E-MTAB-7849:Sample 5_s\", \"run_alias\": \"E-MTAB-7849:Sample 5\", \"fastq_bytes\": \"808555912\", \"fastq_md5\": \"d6131018834f4ac5f548c159d94d23d7\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/007/ERR3276517/ERR3276517.fastq.gz\", \"submitted_bytes\": \"737268093\", \"submitted_md5\": \"bd38ca0a8836faa2624222ba3aa9d0f8\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276517/Sample_5.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"623582515\", \"sra_md5\": \"0bb0489cf8727178f0b2a0d84f304716\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276517\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR327/007/ERR3276517\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR327/007/ERR3276517\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7849:Sample 5\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 5\", \"nominal_sdev\": \"\", \"first_created\": \"2019-04-11\", \"sample_description\": \"Protocols: Primary chick kidney (CK) cells were produced from 2\\u20133 week-old specific pathogen free (SPF) Rhode Island Red chickens. CK cells (0.8 x 10-6 cells/ml) were plated in 10-cm dishes and, upon reaching 100% confluence (two days post-seeding), were washed once with PBS and infected with 9.6 x 10-6 PFU rIBV Beau-R. After 1\\u2009hour incubation at 37\\u2009\\u00b0C, 5% CO2, the inoculum was removed and replaced with 10 ml fresh 1x BES (1X minimal essential Eagle\\u2019s medium [MEM], 0.3% tryptose phosphate broth, 0.2% bovine serum albumin, 20\\u2009mM N,N-Bis(2-hydroxyethyl)-2-aminoethanesulfonic acid (BES), 0.21% sodium bicarbonate, 2\\u2009mM L-glutamine, 250\\u2009U/ml nystatin, 100\\u2009U/ml penicillin, and 100\\u2009U/ml streptomycin). Cells were harvested at 24 hours post-infection when clear regions of cytopathic effect (CPE) were visible.  Cycloheximide (CHX; Sigma-Aldrich) was added directly to the growth medium (to 100 \\u00b5g/ml) and the cells incubated for 2 min at 37 \\u00b0C before rinsing with 5 ml of ice-cold PBS containing CHX (100 \\u00b5g/ml). Subsequently, dishes were incubated on ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00b0C, the supernatants recovered and stor...\", \"accession\": \"SAMEA5563291\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32121\", \"secondary_study_accession\": \"ERP114760\", \"sample_accession\": \"SAMEA5563292\", \"secondary_sample_accession\": \"ERS3365322\", \"experiment_accession\": \"ERX3303391\", \"run_accession\": \"ERR3276518\", \"submission_accession\": \"ERA1826088\", \"tax_id\": \"9031\", \"scientific_name\": \"Gallus gallus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 6_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"55020617\", \"base_count\": \"2287339126\", \"center_name\": \"Department of Pathology, Department of Pathology Division of Virology, University of Cambridge\", \"first_public\": \"2019-06-18\", \"last_updated\": \"2019-04-11\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"study_title\": \"Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"study_alias\": \"E-MTAB-7849\", \"experiment_alias\": \"E-MTAB-7849:Sample 6_s\", \"run_alias\": \"E-MTAB-7849:Sample 6\", \"fastq_bytes\": \"1416002323\", \"fastq_md5\": \"a37ecf2108559e267641c01fa81ac887\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR327/008/ERR3276518/ERR3276518.fastq.gz\", \"submitted_bytes\": \"1277954673\", \"submitted_md5\": \"2d5410adf3c918b15dfc031303f8c680\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR327/ERR3276518/Sample_6.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"1085008214\", \"sra_md5\": \"a446e97b4ffa603abf7dbb26a110fafe\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR327/008/ERR3276518\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR327/008/ERR3276518\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR327/008/ERR3276518\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-7849:Sample 6\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 6\", \"nominal_sdev\": \"\", \"first_created\": \"2019-04-11\", \"sample_description\": \"Protocols: Primary chick kidney (CK) cells were produced from 2\\u20133 week-old specific pathogen free (SPF) Rhode Island Red chickens. 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Subsequently, dishes were incubated on ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped onto the cells. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00b0C, the supernatants recovered and stor...\", \"accession\": \"SAMEA5563301\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling and RNA sequencing of Infectious Bronchitis Virus\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32969\", \"secondary_study_accession\": \"ERP115717\", \"sample_accession\": \"SAMEA5703368\", \"secondary_sample_accession\": \"ERS3507025\", \"experiment_accession\": \"ERX3390678\", \"run_accession\": \"ERR3366404\", \"submission_accession\": \"ERA1994565\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"33896631\", \"base_count\": \"1214976883\", \"center_name\": \"UNIVERSITY OF CAMBRIDGE\", \"first_public\": \"2020-07-04\", \"last_updated\": \"2019-06-10\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"study_title\": \"Ribosome profiling of astrovirus-infected cells\", \"study_alias\": \"E-MTAB-8045\", \"experiment_alias\": \"E-MTAB-8045:Sample 1_s\", \"run_alias\": \"E-MTAB-8045:Sample 1\", \"fastq_bytes\": \"753125273\", \"fastq_md5\": \"63eee81e155f510cc5209ec7a18ccf26\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/004/ERR3366404/ERR3366404.fastq.gz\", \"submitted_bytes\": \"667207032\", \"submitted_md5\": \"039da8a5bbb99b3d33645375dfdfbc6c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366404/sample_1.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366404/sample_1.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366404/sample_1.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"603971685\", \"sra_md5\": \"554a78de287cc897bffa44db782a913d\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/004/ERR3366404\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR336/004/ERR3366404\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/004/ERR3366404\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-8045:Sample 1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 1\", \"nominal_sdev\": \"\", \"first_created\": \"2019-06-10\", \"sample_description\": \"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 \\u00b5M LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 \\u00b5g/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenm\\u00fcller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00baC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\", \"accession\": \"SAMEA5703368\", \"bio_material\": \"\", \"cell_line\": \"Caco-2\", \"cell_type\": \"epithelial cell\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32969\", \"secondary_study_accession\": \"ERP115717\", \"sample_accession\": \"SAMEA5703369\", \"secondary_sample_accession\": \"ERS3507026\", \"experiment_accession\": \"ERX3390679\", \"run_accession\": \"ERR3366405\", \"submission_accession\": \"ERA1994565\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 2_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"41162069\", \"base_count\": \"1528126888\", \"center_name\": \"UNIVERSITY OF CAMBRIDGE\", \"first_public\": \"2020-07-04\", \"last_updated\": \"2019-06-10\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"study_title\": \"Ribosome profiling of astrovirus-infected cells\", \"study_alias\": \"E-MTAB-8045\", \"experiment_alias\": \"E-MTAB-8045:Sample 2_s\", \"run_alias\": \"E-MTAB-8045:Sample 2\", \"fastq_bytes\": \"925295454\", \"fastq_md5\": \"d8f50b06867b4d7dbbc7382657e9215e\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/005/ERR3366405/ERR3366405.fastq.gz\", \"submitted_bytes\": \"820290777\", \"submitted_md5\": \"97cdef85b2cf6e650b1d1cb55228a932\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366405/sample_2.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366405/sample_2.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366405/sample_2.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"751680236\", \"sra_md5\": \"5351b6afdbd5989b22c257d6d71cc6cc\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/005/ERR3366405\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR336/005/ERR3366405\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/005/ERR3366405\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-8045:Sample 2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 2\", \"nominal_sdev\": \"\", \"first_created\": \"2019-06-10\", \"sample_description\": \"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 \\u00b5M LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 \\u00b5g/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenm\\u00fcller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00baC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\", \"accession\": \"SAMEA5703369\", \"bio_material\": \"\", \"cell_line\": \"Caco-2\", \"cell_type\": \"epithelial cell\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32969\", \"secondary_study_accession\": \"ERP115717\", \"sample_accession\": \"SAMEA5703370\", \"secondary_sample_accession\": \"ERS3507027\", \"experiment_accession\": \"ERX3390680\", \"run_accession\": \"ERR3366406\", \"submission_accession\": \"ERA1994565\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 3_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"11238470\", \"base_count\": \"457167576\", \"center_name\": \"UNIVERSITY OF CAMBRIDGE\", \"first_public\": \"2020-07-04\", \"last_updated\": \"2019-06-12\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"study_title\": \"Ribosome profiling of astrovirus-infected cells\", \"study_alias\": \"E-MTAB-8045\", \"experiment_alias\": \"E-MTAB-8045:Sample 3_s\", \"run_alias\": \"E-MTAB-8045:Sample 3\", \"fastq_bytes\": \"260893712\", \"fastq_md5\": \"7caba38a239b8a2214d09d8272fe0372\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/006/ERR3366406/ERR3366406.fastq.gz\", \"submitted_bytes\": \"232939713\", \"submitted_md5\": \"b10a49d89dc7e70793e78a1745f98f71\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366406/sample_3.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366406/sample_3.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366406/sample_3.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"228074816\", \"sra_md5\": \"27de7ad0109c5dfc0223e76335406b60\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/006/ERR3366406\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR336/006/ERR3366406\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/006/ERR3366406\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-8045:Sample 3\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 3\", \"nominal_sdev\": \"\", \"first_created\": \"2019-06-10\", \"sample_description\": \"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 \\u00b5M LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 \\u00b5g/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenm\\u00fcller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00baC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\", \"accession\": \"SAMEA5703370\", \"bio_material\": \"\", \"cell_line\": \"Caco-2\", \"cell_type\": \"epithelial cell\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB32969\", \"secondary_study_accession\": \"ERP115717\", \"sample_accession\": \"SAMEA5703371\", \"secondary_sample_accession\": \"ERS3507028\", \"experiment_accession\": \"ERX3390681\", \"run_accession\": \"ERR3366407\", \"submission_accession\": \"ERA1994565\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"NextSeq 500\", \"library_name\": \"Sample 4_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"12881017\", \"base_count\": \"487714175\", \"center_name\": \"UNIVERSITY OF CAMBRIDGE\", \"first_public\": \"2020-07-04\", \"last_updated\": \"2019-06-10\", \"experiment_title\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"study_title\": \"Ribosome profiling of astrovirus-infected cells\", \"study_alias\": \"E-MTAB-8045\", \"experiment_alias\": \"E-MTAB-8045:Sample 4_s\", \"run_alias\": \"E-MTAB-8045:Sample 4\", \"fastq_bytes\": \"294147175\", \"fastq_md5\": \"6db8739aaa260a436f3206f289da20b9\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR336/007/ERR3366407/ERR3366407.fastq.gz\", \"submitted_bytes\": \"262163422\", \"submitted_md5\": \"8b5fb045e27e46ee56f4bf2d26c9ca15\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366407/sample_4.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR336/ERR3366407/sample_4.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR336/ERR3366407/sample_4.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"242657462\", \"sra_md5\": \"1330cb9e1e0cfe13d3ac037446121137\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/007/ERR3366407\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR336/007/ERR3366407\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR336/007/ERR3366407\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-8045:Sample 4\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Sample 4\", \"nominal_sdev\": \"\", \"first_created\": \"2019-06-10\", \"sample_description\": \"Protocols: At 12 h post infection, cells were either not treated (NT) or treated with 50 \\u00b5M LTM for 30 minutes, flash frozen in a dry ice/ethanol bath, and lysed in the presence of 100 \\u00b5g/ml cycloheximide. Caco2 cells were grown on 150-mm dishes to reach 80-90% confluency, then infected at a multiplicity of infection (MOI) of 5 with HAstV1 virus stock (passage 2, derived from pAVIC1 T7 RNA; Geigenm\\u00fcller et al., 1997, PMID 8995706).  After flash freezing, cells were transferred to dry ice and 400 \\u00b5l of lysis buffer [20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 \\u00b5g/ml cycloheximide and 25 U/ml TURBO\\u2122 DNase (Life Technologies)] dripped on. Cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 \\u00baC, the supernatants recovered and stored in liquid nitrogen. Cell lysates were subjected to ribosome profiling based on previously described protocols (Chung et al., 2015, PMID 26286745; Irigoyen et al., 2016, PMID 26919232), except Ribo-Zero Gold rRNA removal kit (Illumina), not DSN, was used to deplete ribosomal RNA, and a 7-nt randomized sequence was appended to the 5&apos; end of every read during library preparation.\", \"accession\": \"SAMEA5703371\", \"bio_material\": \"\", \"cell_line\": \"Caco-2\", \"cell_type\": \"epithelial cell\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"NextSeq 500 sequencing; Ribosome profiling of astrovirus-infected cells\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB28810\", \"secondary_study_accession\": \"ERP111066\", \"sample_accession\": \"SAMEA6426174\", \"secondary_sample_accession\": \"ERS4192382\", \"experiment_accession\": \"ERX3772928\", \"run_accession\": \"ERR3771179\", \"submission_accession\": \"ERA2322814\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"mouse_elongatingSpermatids_ribo_1_s\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"ssRNA-seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"Inverse rRNA\", \"read_count\": \"\", \"base_count\": \"\", \"center_name\": \"Center for Molecular Biology (ZMBH), Heidelberg University\", \"first_public\": \"2019-12-18\", \"last_updated\": \"2019-12-17\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Using ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs\", \"study_title\": \"Using ribosome profiling and matched RNA sequencing to study the evolution of gene expression levels in mammalian organs across two major gene expression layers\", \"study_alias\": \"E-MTAB-7247\", \"experiment_alias\": \"E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1_s\", \"run_alias\": \"E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1\", \"fastq_bytes\": \"\", \"fastq_md5\": \"\", \"fastq_ftp\": \"\", \"fastq_aspera\": \"\", \"fastq_galaxy\": \"\", \"submitted_bytes\": \"4945079124\", \"submitted_md5\": \"207370b81c3ec1afe25e53e6323da16e\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR377/ERR3771179/mouse_elongatingSpermatids_ribo_1.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"\", \"sra_md5\": \"\", \"sra_ftp\": \"\", \"sra_aspera\": \"\", \"sra_galaxy\": \"\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-72471576596742:mouse_elongatingSpermatids_ribo_1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"mouse_elongatingSpermatids_ribo_1\", \"nominal_sdev\": \"\", \"first_created\": \"2019-12-17\", \"sample_description\": \"Protocols: We generated Ribo-seq and matched RNA-seq data for the following samples: brain (cerebrum), liver, and testis samples from human (Homo sapiens), rhesus macaque (Macaca mulatta), mouse (Mus musculus, strain: CD-1, RjOrl:SWISS), grey short-tailed opossum (Monodelphis domestica), platypus (Ornithorhynchus anatinus), and chicken (red junglefowl, Gallus gallus). Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Our study complies with all relevant ethical regulations with respect to both human samples and samples for the other mammals. Human samples were obtained from official scientific tissue banks or dedicated companies; informed consent was obtained by these sources from donors prior to death or from next-of-kin. The use of all human samples for the type of work described in this study was approved by an Ethics Screening panel from the European Research Council (ERC) (associated with H.K.&apos;s ERC Consolidator Grant 615253, OntoTransEvol) and local ethics committees; that is, from the Cantonal Ethics Commission Lausanne (authorization 504/12) and Ethics Commission from the Medical Faculty of Heidelberg University (authorization S-220/2017). The use of all other mammalian samples for the type of work in this study was approved by ERC Ethics Screening panels (ERC Starting Grant 242597, SexGenTransEvolution, and ERC Consolidator Grant 615253, OntoTransEvol). 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Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). 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Both cell types were stimulated with 10 % extra FBS for 1h followed by 250 uM cycloheximide for 10 min. Cells were rinsed twice with cold PBS and lysed in 1 ml polysome extraction buffer (1 % deoxycholate, 1 % NP40, 10 mM HEPES (pH 7.4), 350 mM KCl, 5 mM MgCl2, 5 mM CaCl2, 250 uM cycloheximide, 1x protease inhibitors (Sigma, P8340) and 2 ul RiboLock RNase inhibitor (ThermoFisher). Lysates were centrifuged for 10 min at 16000 xg and supernatant (leaving lowest ~25% behind) was used for ribosome profiling.The lysate samples were split in to two different digestion samples and digested with either 200 U of E. coli MBP-RNAse I (New England BioLabs) or 100 U of MN (ThermoFisher) by incubating for 40 min (U2OS) or 60 min (Kc167) at RT with slow mixing. 2 U of DNase I (ThermoFisher) was also added to each U2OS sample at the start of digestion. MN reaction was stopped with 10 mM EGTA. The samples were centrifuged at 6000 xg for 5 min to pellet insoluble material. The ribosomes were separated by sucrose step centrifugation using 0.5 M sucrose in polysome extraction buffer supplied with SUPERase-In (1/500) (Ambion). 0.35 ml lysate was layered on top of 0.2 ml sucrose cushion and centrifuged at 100000 xg for 45 min (55000 rpm using TLA 120.1 rotor). Supernatant was removed and pellet was suspended in 600 ul Qiazol reagent (Qiagen). Samples were incubated for 15 mi\", \"accession\": \"SAMEA2421581\", \"bio_material\": \"\", \"cell_line\": \"U2OS\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina Genome Analyzer IIx sequencing; Ribosome profiling with MN and RNaseI\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"female\", \"submitted_sex\": \"female\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7261\", \"secondary_study_accession\": \"ERP006965\", \"sample_accession\": \"SAMEA2766082\", \"secondary_sample_accession\": \"ERS542795\", \"experiment_accession\": \"ERX556151\", \"run_accession\": \"ERR599189\", \"submission_accession\": \"ERA357895\", \"tax_id\": \"246196\", \"scientific_name\": \"Mycolicibacterium smegmatis MC2 155\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"smeg RNA-seq rep1\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"size fractionation\", \"read_count\": \"89004821\", \"base_count\": \"4539245871\", \"center_name\": \"Wadsworth Center, New York State of Health\", \"first_public\": \"2014-12-31\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Ribosome Profiling of Mycobacterium smegmatis\", \"study_title\": \"Ribosome Profiling of Mycobacterium smegmatis\", \"study_alias\": \"E-MTAB-2929\", \"experiment_alias\": \"E-MTAB-2929:smeg RNA-seq rep1\", \"run_alias\": \"E-MTAB-2929:Myco-F_NoIndex_L002_R1_001.fastq.gz\", \"fastq_bytes\": \"3141004216\", \"fastq_md5\": \"5938dce924809007a05335b77c9ffe29\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR599/ERR599189/ERR599189.fastq.gz\", \"submitted_bytes\": \"3800125462\", \"submitted_md5\": \"8617097d7ceb03a1b15ecd5b08ba075c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR599/ERR599189/Myco-F_NoIndex_L002_R1_001.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"2714543152\", \"sra_md5\": \"f4d43591631a189399986c274eb4b188\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599189\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR599/ERR599189\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR599/ERR599189\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2929:smeg RNA-seq rep1\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"smeg RNA-seq rep1\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-12\", \"sample_description\": \"Protocols: 200 ml 7H9 medium was inoculated with 2.0 ml of overnight MC2 155 culture, and grew at 37 degrees C to an OD600 of ~1.0. 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Chlamydomonas cultures were harvested by filtering off the media, the cell paste was flash frozen and pulverized in liquid nitrogen with 5 ml of pre-frozen lysis buffer (20 mM Tris-Cl pH7.5, 140 mM KCl, 5 mM MgCl2, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol, 0.05 mM DTT, 0.1% NP40 and 5% sucrose). The frozen powder was thawed on ice and clarified by centrifugation for 30 min at 4700 rpm at 4 C followed by adjustment of A254 to ~4 before snap-freezing in liquid nitrogen and storage at -80 C. For Chlamydomonas, lysates were slowly thawed on ice and a 200 ul aliquot (A254 = 4) treated with 300 U RNAse 1 (100 U/ul, Life Technologies cat. no. AM2294) in a thermo-mixer at 28 C, 400 rpm for 30 min. The tube was placed on ice, 2 ul of SUPERase-In RNase inhibitor (20 U/ml, Life Technologies) added and the reaction layered onto a 1 M sucrose cushion prepared in Chlamydomonas polysome buffer (20 mM Tris-HCl pH 7.5, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol and 0.5 ug/ml SUPERase-In.). The cushion was ultracentrifuged at 38,000 rpm (5 hr, 4C) in a Beckman Sw41Ti rotor. 150 ul of each cell lysate was\", \"accession\": \"SAMEA2769884\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7276\", \"secondary_study_accession\": \"ERP006983\", \"sample_accession\": \"SAMEA2769886\", \"secondary_sample_accession\": \"ERS543672\", \"experiment_accession\": \"ERX558438\", \"run_accession\": \"ERR601608\", \"submission_accession\": \"ERA358090\", \"tax_id\": \"3055\", \"scientific_name\": \"Chlamydomonas reinhardtii\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2000\", \"library_name\": \"Chlamy-RiboSeq-WT-2\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"size fractionation\", \"read_count\": \"26028360\", \"base_count\": \"1275389640\", \"center_name\": \"Department of Plant Sciences University of Cambridge\", \"first_public\": \"2015-10-16\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"study_title\": \"Examples of ribosome profiling in chlamydomonas and mouse\", \"study_alias\": \"E-MTAB-2934\", \"experiment_alias\": \"E-MTAB-2934:Chlamy-RiboSeq-WT-2\", \"run_alias\": \"E-MTAB-2934:Chlamy-RiboSeq-WT-2.fq.gz\", \"fastq_bytes\": \"980010863\", \"fastq_md5\": \"eb1f87cda1c1717a14f541332e6ce798\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601608/ERR601608.fastq.gz\", \"submitted_bytes\": \"899952284\", \"submitted_md5\": \"24442a30a4ced443a5aab859a2b8a567\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601608/Chlamy-RiboSeq-WT-2.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"1190803293\", \"sra_md5\": \"e24b4f4b4ef13794a590de493c9327c5\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601608\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601608\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601608\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2934:Chlamy-RiboSeq-WT-2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Chlamy-RiboSeq-WT-2\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Chlamydomonas reinhardtii cells (CC-4350 cw Arg 7-8 mt+) (Chlamydomonas Resource Center [http://chlamycollection.org/strains/]) were maintained in 750 ml Tris-acetate-phosphate medium (Harris, 1989) at 23 C on a rotatory shaker (140 rpm) under constant illumination with white light (70 uE.m2.sec-1) to mid-log phase (OD750 ~ 0.6). Chlamydomonas cultures were harvested by filtering off the media, the cell paste was flash frozen and pulverized in liquid nitrogen with 5 ml of pre-frozen lysis buffer (20 mM Tris-Cl pH7.5, 140 mM KCl, 5 mM MgCl2, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol, 0.05 mM DTT, 0.1% NP40 and 5% sucrose). The frozen powder was thawed on ice and clarified by centrifugation for 30 min at 4700 rpm at 4 C followed by adjustment of A254 to ~4 before snap-freezing in liquid nitrogen and storage at -80 C. For Chlamydomonas, lysates were slowly thawed on ice and a 200 ul aliquot (A254 = 4) treated with 300 U RNAse 1 (100 U/ul, Life Technologies cat. no. AM2294) in a thermo-mixer at 28 C, 400 rpm for 30 min. The tube was placed on ice, 2 ul of SUPERase-In RNase inhibitor (20 U/ml, Life Technologies) added and the reaction layered onto a 1 M sucrose cushion prepared in Chlamydomonas polysome buffer (20 mM Tris-HCl pH 7.5, 140 mM KCl, 5 mM MgCl2, 0.5 mM DTT, 100 ug/ml cycloheximide, 100 ug/ml chloramphenicol and 0.5 ug/ml SUPERase-In.). The cushion was ultracentrifuged at 38,000 rpm (5 hr, 4C) in a Beckman Sw41Ti rotor. 150 ul of each cell lysate was\", \"accession\": \"SAMEA2769886\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7276\", \"secondary_study_accession\": \"ERP006983\", \"sample_accession\": \"SAMEA2769885\", \"secondary_sample_accession\": \"ERS543671\", \"experiment_accession\": \"ERX558437\", \"run_accession\": \"ERR601609\", \"submission_accession\": \"ERA358090\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2000\", \"library_name\": \"MusMus-RNASeq\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"size fractionation\", \"read_count\": \"80602120\", \"base_count\": \"4110708120\", \"center_name\": \"Department of Plant Sciences University of Cambridge\", \"first_public\": \"2015-10-16\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"study_title\": \"Examples of ribosome profiling in chlamydomonas and mouse\", \"study_alias\": \"E-MTAB-2934\", \"experiment_alias\": \"E-MTAB-2934:MusMus-RNASeq\", \"run_alias\": \"E-MTAB-2934:MusMus-RNASeq.fq.gz\", \"fastq_bytes\": \"3434877014\", \"fastq_md5\": \"f7937e4877c45b101be2307c8a77ffca\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601609/ERR601609.fastq.gz\", \"submitted_bytes\": \"3180018428\", \"submitted_md5\": \"f5b5a39ddcd28c1ad9cdc658d434b112\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601609/MusMus-RNASeq.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"2910647392\", \"sra_md5\": \"cbf868c74f1d4a377db9bdcca2e90d54\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601609\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601609\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601609\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2934:MusMus-RNASeq\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"MusMus-RNASeq\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Murine 17 clone 1 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum. Cells (107) were plated in a 10 cm dish and upon reaching 100% confluence, cycloheximide (Sigma-Aldrich) was added to 100 ug/ml. After 2 min, cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 sec, transferred to dry ice and 400 ul of lysis buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 ug/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies) dripped on. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 C, the supernatants recovered and stored in liquid nitrogen. For mouse samples, lysates were slowly thawed on ice and 250 ul treated with 7.5 ul RNase 1 followed by incubation for 45 min at room temperature on a rotating wheel. 10 ul of SUPERase-In RNase inhibitor was added, the sample layered onto a 1M sucrose cushion in mammalian polysome buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 100 ug/ml cycloheximide) and ultracentrifuged at 28,000 rpm (16 hr, 4 C) in a Beckman SW55Ti rotor. Subsequently, all ribosome pellets were resuspended in 200 ul of the corresponding polysome buffer and digested with proteinase K (10 mM Tris-HCl pH 7.5, 10% SDS, 200 ug/ml Proteinase K [New England Biolabs]) fo\", \"accession\": \"SAMEA2769885\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7276\", \"secondary_study_accession\": \"ERP006983\", \"sample_accession\": \"SAMEA2769887\", \"secondary_sample_accession\": \"ERS543673\", \"experiment_accession\": \"ERX558439\", \"run_accession\": \"ERR601610\", \"submission_accession\": \"ERA358090\", \"tax_id\": \"10090\", \"scientific_name\": \"Mus musculus\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2000\", \"library_name\": \"MusMus-RiboSeq\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"size fractionation\", \"read_count\": \"38543800\", \"base_count\": \"1965733800\", \"center_name\": \"Department of Plant Sciences University of Cambridge\", \"first_public\": \"2015-10-16\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"study_title\": \"Examples of ribosome profiling in chlamydomonas and mouse\", \"study_alias\": \"E-MTAB-2934\", \"experiment_alias\": \"E-MTAB-2934:MusMus-RiboSeq\", \"run_alias\": \"E-MTAB-2934:MusMus-RiboSeq.fq.gz\", \"fastq_bytes\": \"1687874791\", \"fastq_md5\": \"52519842bad250f56c87b8940e27cda4\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR601/ERR601610/ERR601610.fastq.gz\", \"submitted_bytes\": \"1571241062\", \"submitted_md5\": \"2cb95b43062f90b3f6a3d26b36ab884c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR601/ERR601610/MusMus-RiboSeq.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"1410552209\", \"sra_md5\": \"f39d5a4ac05b89c54c0c5f6c4a8fdb2f\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601610\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR601/ERR601610\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR601/ERR601610\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2934:MusMus-RiboSeq\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"MusMus-RiboSeq\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Murine 17 clone 1 cells were maintained in Dulbeccos modification of Eagles medium supplemented with 10% (vol/vol) fetal calf serum. Cells (107) were plated in a 10 cm dish and upon reaching 100% confluence, cycloheximide (Sigma-Aldrich) was added to 100 ug/ml. After 2 min, cells were rinsed with 5 ml of ice-cold PBS, the dishes submerged in a reservoir of liquid nitrogen for 10 sec, transferred to dry ice and 400 ul of lysis buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 1% Triton X-100, 100 ug/ml cycloheximide and 25 U/ml TURBO DNase (Life Technologies) dripped on. The cells were scraped extensively to ensure lysis, collected and triturated with a 26-G needle ten times. Lysates were clarified by centrifugation for 20 min at 13,000 g at 4 C, the supernatants recovered and stored in liquid nitrogen. For mouse samples, lysates were slowly thawed on ice and 250 ul treated with 7.5 ul RNase 1 followed by incubation for 45 min at room temperature on a rotating wheel. 10 ul of SUPERase-In RNase inhibitor was added, the sample layered onto a 1M sucrose cushion in mammalian polysome buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 5 mM MgCl2, 1 mM DTT, 100 ug/ml cycloheximide) and ultracentrifuged at 28,000 rpm (16 hr, 4 C) in a Beckman SW55Ti rotor. Subsequently, all ribosome pellets were resuspended in 200 ul of the corresponding polysome buffer and digested with proteinase K (10 mM Tris-HCl pH 7.5, 10% SDS, 200 ug/ml Proteinase K [New England Biolabs]) fo\", \"accession\": \"SAMEA2769887\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2000 sequencing; Examples of ribosome profiling in chlamydomonas and mouse\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7282\", \"secondary_study_accession\": \"ERP006990\", \"sample_accession\": \"SAMEA2770197\", \"secondary_sample_accession\": \"ERS543983\", \"experiment_accession\": \"ERX561998\", \"run_accession\": \"ERR605044\", \"submission_accession\": \"ERA358123\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"Ribosome_profiling_LUs19\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"cDNA\", \"read_count\": \"187831868\", \"base_count\": \"9391593400\", \"center_name\": \"Department of Molecular Neuroscience, UCL Institute of Neurology\", \"first_public\": \"2015-03-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"study_title\": \"Analysis of ribosomal occupancy with ribosome profiling.\", \"study_alias\": \"E-MTAB-2941\", \"experiment_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs19\", \"run_alias\": \"E-MTAB-2941:LUs19.fq.gz\", \"fastq_bytes\": \"7876556889\", \"fastq_md5\": \"00702a68d0d8893c4708120792ca9023\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605044/ERR605044.fastq.gz\", \"submitted_bytes\": \"7997001793\", \"submitted_md5\": \"8aacb7829a24ef2bfc65ef0ad9ac8270\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605044/LUs19.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605044/LUs19.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605044/LUs19.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"9408655122\", \"sra_md5\": \"9a61ebbe3b7826e292a1abd14d17d3ab\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605044\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605044\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605044\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs19\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Ribosome_profiling_LUs19\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\", \"accession\": \"SAMEA2770197\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"HEK293\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7282\", \"secondary_study_accession\": \"ERP006990\", \"sample_accession\": \"SAMEA2770198\", \"secondary_sample_accession\": \"ERS543984\", \"experiment_accession\": \"ERX561999\", \"run_accession\": \"ERR605045\", \"submission_accession\": \"ERA358123\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"Ribosome_profiling_LUs18\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"cDNA\", \"read_count\": \"125136641\", \"base_count\": \"6256832050\", \"center_name\": \"Department of Molecular Neuroscience, UCL Institute of Neurology\", \"first_public\": \"2015-03-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"study_title\": \"Analysis of ribosomal occupancy with ribosome profiling.\", \"study_alias\": \"E-MTAB-2941\", \"experiment_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs18\", \"run_alias\": \"E-MTAB-2941:LUs18.fq.gz\", \"fastq_bytes\": \"4854486029\", \"fastq_md5\": \"c0d00975ebe359cc9fd6cb93fd86e050\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605045/ERR605045.fastq.gz\", \"submitted_bytes\": \"4919838306\", \"submitted_md5\": \"f10e35332d6ae363d7b80fe6f6495d1c\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605045/LUs18.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605045/LUs18.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605045/LUs18.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"5992215540\", \"sra_md5\": \"3f78911919cc8a67c97572ff455df401\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605045\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605045\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605045\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs18\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Ribosome_profiling_LUs18\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\", \"accession\": \"SAMEA2770198\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"HEK293\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7282\", \"secondary_study_accession\": \"ERP006990\", \"sample_accession\": \"SAMEA2770199\", \"secondary_sample_accession\": \"ERS543985\", \"experiment_accession\": \"ERX562000\", \"run_accession\": \"ERR605046\", \"submission_accession\": \"ERA358123\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"Ribosome_profiling_LUs20\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"cDNA\", \"read_count\": \"169888632\", \"base_count\": \"8494431600\", \"center_name\": \"Department of Molecular Neuroscience, UCL Institute of Neurology\", \"first_public\": \"2015-03-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"study_title\": \"Analysis of ribosomal occupancy with ribosome profiling.\", \"study_alias\": \"E-MTAB-2941\", \"experiment_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs20\", \"run_alias\": \"E-MTAB-2941:LUs20.fq.gz\", \"fastq_bytes\": \"6928377564\", \"fastq_md5\": \"a83d6990fbac5cba1ddfa7f2940251e7\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR605/ERR605046/ERR605046.fastq.gz\", \"submitted_bytes\": \"7026234110\", \"submitted_md5\": \"c1ed5c2ff1255fc9e8e902a2abfa41ac\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605046/LUs20.fq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR605/ERR605046/LUs20.fq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR605/ERR605046/LUs20.fq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"8432389084\", \"sra_md5\": \"ab52a5ebad2c57b3147f5197fd2ce317\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605046\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR605/ERR605046\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR605/ERR605046\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2941:Ribosome_profiling_LUs20\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"Ribosome_profiling_LUs20\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-16\", \"sample_description\": \"Protocols: Cells were not treated with siRNA (untreated), treated with anti-STAU1 siRNA (knockdown), or treated with anti-STAU1 siRNA and the STAU1 level was rescued by the expression of siRNA-resistant STAU1 (rescue). Cells were subjected to Cycloheximide treatment before collection. Ribosome profiling protocol was followed to isolate protected RNA from the Cycloheximide teated cells and amplify cDNA library as described in the manuscript. Specific barcodes were used for each RT reaction as described in the manuscript. Random barcodes were also incoperated into cDNAs to distinguish between PCR duplication of cDNA products. The final products were obtained by PCR with Illumina paired-end sequencing primers: 5-CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATCT-3; 5-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT-3\", \"accession\": \"SAMEA2770199\", \"bio_material\": \"\", \"cell_line\": \"\", \"cell_type\": \"HEK293\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2500 sequencing; Analysis of ribosomal occupancy with ribosome profiling.\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"ERC000011\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJEB7301\", \"secondary_study_accession\": \"ERP007009\", \"sample_accession\": \"SAMEA3130362\", \"secondary_sample_accession\": \"ERS544002\", \"experiment_accession\": \"ERX575541\", \"run_accession\": \"ERR618768\", \"submission_accession\": \"ERA358164\", \"tax_id\": \"511145\", \"scientific_name\": \"Escherichia coli str. K-12 substr. MG1655\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2500\", \"library_name\": \"RyhB RNA-seq rep2\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"RNA-Seq\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"cDNA\", \"read_count\": \"204609482\", \"base_count\": \"5115237050\", \"center_name\": \"Wadsworth Center New York State Department of Health\", \"first_public\": \"2014-11-01\", \"last_updated\": \"2018-11-16\", \"experiment_title\": \"Illumina HiSeq 2500 sequencing; Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\", \"study_title\": \"Genome-wide ribosome profiling to identify regulatory targets of small RNA RyhB in E.coli\", \"study_alias\": \"E-MTAB-2903\", \"experiment_alias\": \"E-MTAB-2903:RyhB RNA-seq rep2\", \"run_alias\": \"E-MTAB-2903:RyhB-RNAseq-rep2-trimmed.fastq.gz\", \"fastq_bytes\": \"5733524945\", \"fastq_md5\": \"514e46d210bd165d51c6028bd67da8fe\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/ERR618/ERR618768/ERR618768.fastq.gz\", \"submitted_bytes\": \"5091767307\", \"submitted_md5\": \"5b03fa5a3df1ef1d9458a7bf93d69051\", \"submitted_ftp\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz\", \"submitted_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz\", \"submitted_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/run/ERR618/ERR618768/RyhB-RNAseq-rep2-trimmed.fastq.gz\", \"submitted_format\": \"FASTQ\", \"sra_bytes\": \"3762295101\", \"sra_md5\": \"20f3e37ab44bf6189fd8bae20adec543\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618768\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/err/ERR618/ERR618768\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/err/ERR618/ERR618768\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"E-MTAB-2903:RyhB RNA-seq rep2\", \"broker_name\": \"ArrayExpress\", \"sample_title\": \"RyhB RNA-seq rep2\", \"nominal_sdev\": \"\", \"first_created\": \"2014-09-17\", \"sample_description\": \"Protocols: 200 ml LB medium was inoculated with 2.0 ml of overnight E.coli culture, and grew at 37 degrees C to an OD600 of ~0.5. Arabinose was added to 0.1% 10 minutes before harvesting the cells to induce the expression of RyhB. Then cells were harvested by pretreatment with chloramphenicol to a final concentration of 100 \\u03bcg/ml for 2 minutes followed by rapid filtration by using a 500ml 0.45um PES filter system (Celltreat). Cells were collected and flash frozen in liquid nitrogen together with 0.65 ml lysis buffer (Oh et al. 2011). The frozen cells were pulverized 6 times at 15 Hz for 3 min by a mixer mill (Retsch MM400). The grinding jars were re-chilled in liquid nitrogen to keep the cells frozen between each cycle. After the pulverized cells were recovered, small scoopful was saved for bacterial transcript enrichment. The pulverized cell powder was extracted with acid phenol and chloroform followed by isopropanol precipitation as described (Oh et al. 2011). 16S and 23S ribosomal RNAs were removed by subtractive hybridization using Ambion MICROExpressTM kit following manufacturer&apos;s manual. The enriched mRNAs were randomly fragmented as described (Oh et al. 2011) Both ribosomal footprints and total mRNAs were converted into cDNA libraries as described (Ingolia 2010, Oh et al. 2011) with modification. The RNA molecules were dephosphorylated by treating with T4 polynucleotide kinase (New England Biolabs). 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GSM1197613: Ribosome profiling rep1-SiControl-input-polyA C2; Homo sapiens; RNA-Seq\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}, {\"study_accession\": \"PRJNA213675\", \"secondary_study_accession\": \"SRP028325\", \"sample_accession\": \"SAMN02297661\", \"secondary_sample_accession\": \"SRS465171\", \"experiment_accession\": \"SRX329061\", \"run_accession\": \"SRR944655\", \"submission_accession\": \"SRA096240\", \"tax_id\": \"9606\", \"scientific_name\": \"Homo sapiens\", \"instrument_platform\": \"ILLUMINA\", \"instrument_model\": \"Illumina HiSeq 2000\", \"library_name\": \"\", \"library_layout\": \"SINGLE\", \"nominal_length\": \"\", \"library_strategy\": \"OTHER\", \"library_source\": \"TRANSCRIPTOMIC\", \"library_selection\": \"other\", \"read_count\": \"26371551\", \"base_count\": \"2637155100\", \"center_name\": \"GEO\", \"first_public\": \"2014-04-15\", \"last_updated\": \"2019-03-23\", \"experiment_title\": \"Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER\", \"study_title\": \"m6A-dependent regulation of messenger RNA stability\", \"study_alias\": \"GSE49339\", \"experiment_alias\": \"GSM1197614\", \"run_alias\": \"GSM1197614_r1\", \"fastq_bytes\": \"1734744346\", \"fastq_md5\": \"9eff5a3bdc10579ba50484dead9f6582\", \"fastq_ftp\": \"ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz\", \"fastq_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz\", \"fastq_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/fastq/SRR944/SRR944655/SRR944655.fastq.gz\", \"submitted_bytes\": \"\", \"submitted_md5\": \"\", \"submitted_ftp\": \"\", \"submitted_aspera\": \"\", \"submitted_galaxy\": \"\", \"submitted_format\": \"\", \"sra_bytes\": \"1817504633\", \"sra_md5\": \"cd15fb0c6c050508ed7c9bb4a6c9f418\", \"sra_ftp\": \"ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944655\", \"sra_aspera\": \"fasp.sra.ebi.ac.uk:/vol1/srr/SRR944/SRR944655\", \"sra_galaxy\": \"ftp.sra.ebi.ac.uk/vol1/srr/SRR944/SRR944655\", \"cram_index_ftp\": \"\", \"cram_index_aspera\": \"\", \"cram_index_galaxy\": \"\", \"sample_alias\": \"GSM1197614\", \"broker_name\": \"\", \"sample_title\": \"Ribosome profiling rep1-SiYTHDF2-RPF C3\", \"nominal_sdev\": \"\", \"first_created\": \"2014-04-15\", \"sample_description\": \"Ribosome profiling rep1-SiYTHDF2-RPF C3\", \"accession\": \"SAMN02297661\", \"bio_material\": \"\", \"cell_line\": \"HeLa\", \"cell_type\": \"\", \"collected_by\": \"\", \"collection_date\": \"\", \"country\": \"\", \"cultivar\": \"\", \"culture_collection\": \"\", \"description\": \"Illumina HiSeq 2000 sequencing; GSM1197614: Ribosome profiling rep1-SiYTHDF2-RPF C3; Homo sapiens; OTHER\", \"dev_stage\": \"\", \"ecotype\": \"\", \"environmental_sample\": \"false\", \"germline\": \"false\", \"identified_by\": \"\", \"isolate\": \"\", \"isolation_source\": \"\", \"location\": \"\", \"mating_type\": \"\", \"serotype\": \"\", \"serovar\": \"\", \"sex\": \"\", \"submitted_sex\": \"\", \"specimen_voucher\": \"\", \"strain\": \"\", \"sub_species\": \"\", \"sub_strain\": \"\", \"tissue_lib\": \"\", \"tissue_type\": \"\", \"variety\": \"\", \"checklist\": \"\", \"depth\": \"\", \"elevation\": \"\", \"altitude\": \"\", \"environment_biome\": \"\", \"environment_feature\": \"\", \"environment_material\": \"\", \"temperature\": \"\", \"salinity\": \"\", \"sampling_campaign\": \"\", \"sampling_site\": \"\", \"sampling_platform\": \"\", \"protocol_label\": \"\", \"project_name\": \"\", \"host\": \"\", \"host_tax_id\": \"\", \"host_status\": \"\", \"host_sex\": \"\", \"submitted_host_sex\": \"\", \"host_body_site\": \"\", \"host_gravidity\": \"\", \"host_phenotype\": \"\", \"host_genotype\": \"\", \"host_growth_conditions\": \"\", \"environmental_package\": \"\", \"investigation_type\": \"\", \"experimental_factor\": \"\", \"sample_collection\": \"\", \"sequencing_method\": \"\", \"target_gene\": \"\", \"ph\": \"\", \"sample_material\": \"\", \"taxonomic_identity_marker\": \"\", \"assembly_quality\": \"\", \"assembly_software\": \"\", \"taxonomic_classification\": \"\", \"completeness_score\": \"\", \"contamination_score\": \"\", \"binning_software\": \"\", \"lat\": \"\", \"lon\": \"\"}]"
  },
  {
    "path": "tests/data/test_search/geo_search_test1.txt",
    "content": "SRX8089313\nSRX8089314\nSRX8089315\nSRX8089316\nSRX8089317\nSRX8089318\nSRX8089319\nSRX8089320\nSRX8089286\nSRX8089275\nSRX8089276\nSRX8089277\nSRX8089278\nSRX8089279\nSRX8089280\nSRX8089281\nSRX8089282\nSRX8089283\nSRX8089284\nSRX8089285\nSRX8089321\nSRX8089287\nSRX8089288\nSRX8089289\nSRX8089290\nSRX8089291\nSRX8089292\nSRX8089293\nSRX8089294\nSRX8089295\nSRX8089296\nSRX8466645\nSRX8142119\nSRX8142120\nSRX8142121\nSRX8142122\nSRX8142123\nSRX8142124\nSRX8142125\nSRX8142126\nSRX8142127\nSRX8466643\nSRX8466644\nSRX8089344\nSRX8466646\nSRX8466647\nSRX8466648\nSRX8466649\nSRX8466650\nSRX8466651\nSRX8466652\nSRX8466653\nSRX8466654\nSRX8466655\nSRX8466656\nSRX8089333\nSRX8089322\nSRX8089323\nSRX8089324\nSRX8089325\nSRX8089326\nSRX8089327\nSRX8089328\nSRX8089329\nSRX8089330\nSRX8089331\nSRX8089332\nSRX8466765\nSRX8089334\nSRX8089335\nSRX8089336\nSRX8089337\nSRX8089338\nSRX8089339\nSRX8089340\nSRX8089341\nSRX8089342\nSRX8089343"
  },
  {
    "path": "tests/data/test_search/sra_search_test1.txt",
    "content": "SRX137370\nSRX137371"
  },
  {
    "path": "tests/data/test_search/sra_test.xml",
    "content": "<?xml version=\"1.0\" ?>\n<EXPERIMENT_PACKAGE_SET>\n<EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369051\" accession=\"SRX7830165\"><IDENTIFIERS><PRIMARY_ID>SRX7830165</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369051: rnaH27nsun3; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP251352\" refname=\"GSE146256\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6240844\"><IDENTIFIERS><PRIMARY_ID>SRS6240844</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369051</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369051</ID><LABEL>GSM4369051</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369051</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. 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In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. 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Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP251352\" refname=\"GSE146256\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6240843\"><IDENTIFIERS><PRIMARY_ID>SRS6240843</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369050</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369050</ID><LABEL>GSM4369050</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369050</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369049</ID><LABEL>GSM4369049</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369049</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369049\" accession=\"SRS6240842\"><IDENTIFIERS><PRIMARY_ID>SRS6240842</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262096</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369049</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaH27nsun1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>27</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>noNSUN</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240842\" sample_name=\"GSM4369049\" sample_title=\"rnaH27nsun1\" spots=\"23045718\" bases=\"1164355435\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240842</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262096</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369049</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369049_r1\" accession=\"SRR11217923\" total_spots=\"23045718\" total_bases=\"1164355435\" size=\"517675060\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217923</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830163\" refname=\"GSM4369049\"/><Pool><Member member_name=\"\" accession=\"SRS6240842\" sample_name=\"GSM4369049\" sample_title=\"rnaH27nsun1\" spots=\"23045718\" bases=\"1164355435\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240842</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262096</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369049</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"579257723\" date=\"2020-03-03 08:49:41\" md5=\"09b25e1939de2b4a379afd4633369775\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR11217923/ICN-10_S10.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR11217923/ICN-10_S10.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217923\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010955/SRR11217923\" size=\"517677177\" date=\"2020-03-03 08:50:05\" md5=\"9ba3ae130439af2590c7307fe37ef21d\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010955/SRR11217923\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-8/SRR11217923/SRR11217923.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-9/SRR11217923/SRR11217923.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"23045718\"><Read index=\"0\" count=\"23045718\" average=\"50.52\" stdev=\"0.80\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"23045718\"/><Elements count=\"1164355435\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1164355435\"><Base value=\"A\" count=\"303774981\"/><Base value=\"C\" count=\"302133692\"/><Base value=\"G\" count=\"273117993\"/><Base value=\"T\" count=\"284991572\"/><Base value=\"N\" count=\"337197\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369048\" accession=\"SRX7830162\"><IDENTIFIERS><PRIMARY_ID>SRX7830162</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369048: rnaH27WT3; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. 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Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369048\" accession=\"SRS6240841\"><IDENTIFIERS><PRIMARY_ID>SRS6240841</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262097</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369048</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaH27WT3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>27</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240841\" sample_name=\"GSM4369048\" sample_title=\"rnaH27WT3\" spots=\"20220436\" bases=\"1021477707\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240841</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262097</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369048</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369048_r1\" accession=\"SRR11217922\" total_spots=\"20220436\" total_bases=\"1021477707\" size=\"454916247\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217922</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830162\" refname=\"GSM4369048\"/><Pool><Member member_name=\"\" accession=\"SRS6240841\" sample_name=\"GSM4369048\" sample_title=\"rnaH27WT3\" spots=\"20220436\" bases=\"1021477707\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240841</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262097</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369048</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"506379353\" date=\"2020-03-03 08:47:59\" md5=\"314952e01bb1473982cf0c332ab91817\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR11217922/ICN-09_S9.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR11217922/ICN-09_S9.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217922\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/010955/SRR11217922\" size=\"454918368\" date=\"2020-03-03 08:48:17\" md5=\"f60bf66704ca1278d5ce96a415971bed\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/010955/SRR11217922\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-6/SRR11217922/SRR11217922.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR11217922/SRR11217922.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"20220436\"><Read index=\"0\" count=\"20220436\" average=\"50.52\" stdev=\"0.83\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"20220436\"/><Elements count=\"1021477707\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1021477707\"><Base value=\"A\" count=\"267649932\"/><Base value=\"C\" count=\"265386720\"/><Base value=\"G\" count=\"240228857\"/><Base value=\"T\" count=\"247852935\"/><Base value=\"N\" count=\"359263\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369047\" accession=\"SRX7830161\"><IDENTIFIERS><PRIMARY_ID>SRX7830161</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369047: rnaH27WT2; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. 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Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369047\" accession=\"SRS6240840\"><IDENTIFIERS><PRIMARY_ID>SRS6240840</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262098</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369047</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaH27WT2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>27</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240840\" sample_name=\"GSM4369047\" sample_title=\"rnaH27WT2\" spots=\"23193519\" bases=\"1171799561\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240840</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262098</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369047</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369047_r1\" accession=\"SRR11217921\" total_spots=\"23193519\" total_bases=\"1171799561\" size=\"519655753\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217921</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830161\" refname=\"GSM4369047\"/><Pool><Member member_name=\"\" accession=\"SRS6240840\" sample_name=\"GSM4369047\" sample_title=\"rnaH27WT2\" spots=\"23193519\" bases=\"1171799561\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240840</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262098</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369047</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"574811709\" date=\"2020-03-03 08:47:50\" md5=\"2dea86900e8e176457d67f60324e0b28\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR11217921/ICN-08_S8.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR11217921/ICN-08_S8.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217921\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010955/SRR11217921\" size=\"519657875\" date=\"2020-03-03 08:48:02\" md5=\"feca6d4e41da203410303091728ad42a\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010955/SRR11217921\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-8/SRR11217921/SRR11217921.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-9/SRR11217921/SRR11217921.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"23193519\"><Read index=\"0\" count=\"23193519\" average=\"50.52\" stdev=\"0.82\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"23193519\"/><Elements count=\"1171799561\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1171799561\"><Base value=\"A\" count=\"306725822\"/><Base value=\"C\" count=\"306004751\"/><Base value=\"G\" count=\"275721333\"/><Base value=\"T\" count=\"282883912\"/><Base value=\"N\" count=\"463743\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369046\" accession=\"SRX7830160\"><IDENTIFIERS><PRIMARY_ID>SRX7830160</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369046: rnaH27WT1; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369046</ID><LABEL>GSM4369046</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369046</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369046\" accession=\"SRS6240839\"><IDENTIFIERS><PRIMARY_ID>SRS6240839</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262099</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369046</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaH27WT1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>27</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240839\" sample_name=\"GSM4369046\" sample_title=\"rnaH27WT1\" spots=\"29264100\" bases=\"1478364947\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240839</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262099</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369046</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369046_r1\" accession=\"SRR11217920\" total_spots=\"29264100\" total_bases=\"1478364947\" size=\"659671877\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217920</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830160\" refname=\"GSM4369046\"/><Pool><Member member_name=\"\" accession=\"SRS6240839\" sample_name=\"GSM4369046\" sample_title=\"rnaH27WT1\" spots=\"29264100\" bases=\"1478364947\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240839</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262099</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369046</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"740347495\" date=\"2020-03-03 08:49:25\" md5=\"2b422efb98539cc38d7fd07e4f5ad280\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"s3://sra-pub-src-9/SRR11217920/ICN-07_S7.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-10/SRR11217920/ICN-07_S7.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217920\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/010955/SRR11217920\" size=\"659673990\" date=\"2020-03-03 08:49:44\" md5=\"4cc08d2cd582626f82c7a1dec67d1b46\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/010955/SRR11217920\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-8/SRR11217920/SRR11217920.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-9/SRR11217920/SRR11217920.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"29264100\"><Read index=\"0\" count=\"29264100\" average=\"50.52\" stdev=\"0.86\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"29264100\"/><Elements count=\"1478364947\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1478364947\"><Base value=\"A\" count=\"382118207\"/><Base value=\"C\" count=\"382503596\"/><Base value=\"G\" count=\"349309307\"/><Base value=\"T\" count=\"363572582\"/><Base value=\"N\" count=\"861255\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369045\" accession=\"SRX7830159\"><IDENTIFIERS><PRIMARY_ID>SRX7830159</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369045: rnaL20nsun3; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369045</ID><LABEL>GSM4369045</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369045</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369044</ID><LABEL>GSM4369044</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369044</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369044\" accession=\"SRS6240837\"><IDENTIFIERS><PRIMARY_ID>SRS6240837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262101</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369044</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaL20nsun2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>20</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>noNSUN</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240837\" sample_name=\"GSM4369044\" sample_title=\"rnaL20nsun2\" spots=\"32298489\" bases=\"1631781747\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262101</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369044</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369044_r1\" accession=\"SRR11217918\" total_spots=\"32298489\" total_bases=\"1631781747\" size=\"723109558\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217918</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830158\" refname=\"GSM4369044\"/><Pool><Member member_name=\"\" accession=\"SRS6240837\" sample_name=\"GSM4369044\" sample_title=\"rnaL20nsun2\" spots=\"32298489\" bases=\"1631781747\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262101</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369044</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"ICN-05_S5.fastq.gz\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRZ/011217/SRR11217918/ICN-05_S5.fastq.gz\" size=\"801345858\" date=\"2020-03-03 08:50:47\" md5=\"8103aefb1b95eaf0acb7578300651ec0\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRZ/011217/SRR11217918/ICN-05_S5.fastq.gz\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217918\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010954/SRR11217918\" size=\"723111676\" date=\"2020-03-03 08:51:12\" md5=\"756e31c0766fe84e79131bacf459f320\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010954/SRR11217918\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-9/SRR11217918/SRR11217918.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-8/SRR11217918/SRR11217918.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"32298489\"><Read index=\"0\" count=\"32298489\" average=\"50.52\" stdev=\"0.81\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"32298489\"/><Elements count=\"1631781747\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1631781747\"><Base value=\"A\" count=\"426634172\"/><Base value=\"C\" count=\"419579176\"/><Base value=\"G\" count=\"384996637\"/><Base value=\"T\" count=\"399983025\"/><Base value=\"N\" count=\"588737\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369043\" accession=\"SRX7830157\"><IDENTIFIERS><PRIMARY_ID>SRX7830157</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369043: rnaL20nsun1; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369043</ID><LABEL>GSM4369043</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369043</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369043\" accession=\"SRS6240836\"><IDENTIFIERS><PRIMARY_ID>SRS6240836</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262102</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369043</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaL20nsun1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>20</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>noNSUN</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240836\" sample_name=\"GSM4369043\" sample_title=\"rnaL20nsun1\" spots=\"29902595\" bases=\"1510510194\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240836</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262102</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369043</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369043_r1\" accession=\"SRR11217917\" total_spots=\"29902595\" total_bases=\"1510510194\" size=\"671811120\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217917</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830157\" refname=\"GSM4369043\"/><Pool><Member member_name=\"\" accession=\"SRS6240836\" sample_name=\"GSM4369043\" sample_title=\"rnaL20nsun1\" spots=\"29902595\" bases=\"1510510194\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240836</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262102</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369043</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"741235433\" date=\"2020-03-03 08:51:18\" md5=\"916fe1fa029221d55d678f7fb8fc3850\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"s3://sra-pub-src-9/SRR11217917/ICN-04_S4.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-10/SRR11217917/ICN-04_S4.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217917\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/010954/SRR11217917\" size=\"671813239\" date=\"2020-03-03 08:51:41\" md5=\"8f17921020f5338021259ad66cfa3d90\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/010954/SRR11217917\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-8/SRR11217917/SRR11217917.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-9/SRR11217917/SRR11217917.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"29902595\"><Read index=\"0\" count=\"29902595\" average=\"50.51\" stdev=\"0.86\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"29902595\"/><Elements count=\"1510510194\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1510510194\"><Base value=\"A\" count=\"389909920\"/><Base value=\"C\" count=\"389932739\"/><Base value=\"G\" count=\"356931273\"/><Base value=\"T\" count=\"372965076\"/><Base value=\"N\" count=\"771186\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369042\" accession=\"SRX7830156\"><IDENTIFIERS><PRIMARY_ID>SRX7830156</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369042: rnaL20WT3; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP251352\" refname=\"GSE146256\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6240835\"><IDENTIFIERS><PRIMARY_ID>SRS6240835</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369042</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369042</ID><LABEL>GSM4369042</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369042</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369042\" accession=\"SRS6240835\"><IDENTIFIERS><PRIMARY_ID>SRS6240835</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262103</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369042</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaL20WT3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>20</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240835\" sample_name=\"GSM4369042\" sample_title=\"rnaL20WT3\" spots=\"31692524\" bases=\"1600940503\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240835</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262103</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369042</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369042_r1\" accession=\"SRR11217916\" total_spots=\"31692524\" total_bases=\"1600940503\" size=\"710100849\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217916</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830156\" refname=\"GSM4369042\"/><Pool><Member member_name=\"\" accession=\"SRS6240835\" sample_name=\"GSM4369042\" sample_title=\"rnaL20WT3\" spots=\"31692524\" bases=\"1600940503\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240835</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262103</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369042</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"788245180\" date=\"2020-03-03 08:52:30\" md5=\"0bd13a1fc7c8b899433d2b0703d058ae\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-14/SRR11217916/ICN-03_S3.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-14/SRR11217916/ICN-03_S3.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217916\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/010954/SRR11217916\" size=\"710102964\" date=\"2020-03-03 08:52:54\" md5=\"e0d2490640aa5c4320a1ef928ed541fc\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/010954/SRR11217916\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-3/SRR11217916/SRR11217916.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR11217916/SRR11217916.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"31692524\"><Read index=\"0\" count=\"31692524\" average=\"50.51\" stdev=\"0.86\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"31692524\"/><Elements count=\"1600940503\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1600940503\"><Base value=\"A\" count=\"412825059\"/><Base value=\"C\" count=\"412495776\"/><Base value=\"G\" count=\"381736364\"/><Base value=\"T\" count=\"393043989\"/><Base value=\"N\" count=\"839315\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369041\" accession=\"SRX7830155\"><IDENTIFIERS><PRIMARY_ID>SRX7830155</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369041: rnaL20WT2; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369041</ID><LABEL>GSM4369041</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369041</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369041\" accession=\"SRS6240834\"><IDENTIFIERS><PRIMARY_ID>SRS6240834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262104</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369041</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaL20WT2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>20</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240834\" sample_name=\"GSM4369041\" sample_title=\"rnaL20WT2\" spots=\"30511012\" bases=\"1541330541\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262104</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369041</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369041_r1\" accession=\"SRR11217915\" total_spots=\"30511012\" total_bases=\"1541330541\" size=\"682577921\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217915</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830155\" refname=\"GSM4369041\"/><Pool><Member member_name=\"\" accession=\"SRS6240834\" sample_name=\"GSM4369041\" sample_title=\"rnaL20WT2\" spots=\"30511012\" bases=\"1541330541\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262104</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369041</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"747661439\" date=\"2020-03-03 08:50:32\" md5=\"4937a59fcdbbba1a31f931f2771dcdb1\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-14/SRR11217915/ICN-02_S2.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-14/SRR11217915/ICN-02_S2.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217915\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010954/SRR11217915\" size=\"682580036\" date=\"2020-03-03 08:50:56\" md5=\"1fe769ceb3acf5f9b8ba1d88b43131ad\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010954/SRR11217915\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-3/SRR11217915/SRR11217915.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR11217915/SRR11217915.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"30511012\"><Read index=\"0\" count=\"30511012\" average=\"50.52\" stdev=\"0.82\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"30511012\"/><Elements count=\"1541330541\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1541330541\"><Base value=\"A\" count=\"398519968\"/><Base value=\"C\" count=\"397956128\"/><Base value=\"G\" count=\"366381635\"/><Base value=\"T\" count=\"377867480\"/><Base value=\"N\" count=\"605330\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4369040\" accession=\"SRX7830154\"><IDENTIFIERS><PRIMARY_ID>SRX7830154</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4369040: rnaL20WT1; 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RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304369040</ID><LABEL>GSM4369040</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4369040</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE146256\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1050341\"><IDENTIFIERS><PRIMARY_ID>SRA1050341</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE146256\" accession=\"SRP251352\"><IDENTIFIERS><PRIMARY_ID>SRP251352</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA609901</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE146256</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE146256</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4369040\" accession=\"SRS6240833\"><IDENTIFIERS><PRIMARY_ID>SRS6240833</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262081</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369040</EXTERNAL_ID></IDENTIFIERS><TITLE>rnaL20WT1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>609901</ID><LABEL>PRJNA609901</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>datapipeline</TAG><VALUE>Pipeline2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>temperature</TAG><VALUE>20</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>WT</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6240833\" sample_name=\"GSM4369040\" sample_title=\"rnaL20WT1\" spots=\"29920739\" bases=\"1511594659\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240833</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262081</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369040</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4369040_r1\" accession=\"SRR11217914\" total_spots=\"29920739\" total_bases=\"1511594659\" size=\"670669468\" load_done=\"true\" published=\"2020-06-30 17:40:41\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11217914</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7830154\" refname=\"GSM4369040\"/><Pool><Member member_name=\"\" accession=\"SRS6240833\" sample_name=\"GSM4369040\" sample_title=\"rnaL20WT1\" spots=\"29920739\" bases=\"1511594659\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6240833</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14262081</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4369040</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"747260046\" date=\"2020-03-03 08:51:09\" md5=\"40bb19b1388c4bac9166816869735de6\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR11217914/ICN-01_S1.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-10/SRR11217914/ICN-01_S1.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11217914\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/010954/SRR11217914\" size=\"670671586\" date=\"2020-03-03 08:51:39\" md5=\"839fc0eebacce559f9a303e79d3f293a\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/010954/SRR11217914\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-9/SRR11217914/SRR11217914.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-8/SRR11217914/SRR11217914.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"29920739\"><Read index=\"0\" count=\"29920739\" average=\"50.52\" stdev=\"0.83\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"29920739\"/><Elements count=\"1511594659\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"1511594659\"><Base value=\"A\" count=\"391850472\"/><Base value=\"C\" count=\"388020000\"/><Base value=\"G\" count=\"353950329\"/><Base value=\"T\" count=\"377154260\"/><Base value=\"N\" count=\"619598\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340680\" accession=\"SRX7806834\"><IDENTIFIERS><PRIMARY_ID>SRX7806834</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340680: pmk-1(km25)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJNA608907</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6219869\"><IDENTIFIERS><PRIMARY_ID>SRS6219869</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213080</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340680</ID><LABEL>GSM4340680</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340680</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA608907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE145983</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE145983</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4340680\" accession=\"SRS6219869\"><IDENTIFIERS><PRIMARY_ID>SRS6219869</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213080</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340680</EXTERNAL_ID></IDENTIFIERS><TITLE>pmk-1(km25)RPF Replicate 2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>608907</ID><LABEL>PRJNA608907</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>Stage</TAG><VALUE>L3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>pmk-1(km25)</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6219869\" sample_name=\"GSM4340680\" sample_title=\"pmk-1(km25)RPF Replicate 2\" spots=\"34364285\" bases=\"2542957090\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219869</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213080</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340680</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4340680_r1\" accession=\"SRR11186550\" total_spots=\"34364285\" total_bases=\"2542957090\" size=\"863253383\" load_done=\"true\" published=\"2020-05-05 11:25:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11186550</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7806834\" refname=\"GSM4340680\"/><Pool><Member member_name=\"\" accession=\"SRS6219869\" sample_name=\"GSM4340680\" sample_title=\"pmk-1(km25)RPF Replicate 2\" spots=\"34364285\" bases=\"2542957090\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219869</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213080</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340680</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"741411436\" date=\"2020-02-26 13:49:19\" md5=\"4060923ab1baa6e2a5e05714ece16189\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR11186550/PIR9_S10_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-10/SRR11186550/PIR9_S10_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" size=\"762175645\" date=\"2020-02-26 13:49:34\" md5=\"deaaf6db25d2938c49fbaf88cbdb6da9\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR11186550/PIR9_S10_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-10/SRR11186550/PIR9_S10_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11186550\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010924/SRR11186550\" size=\"863254910\" date=\"2020-02-26 13:49:58\" md5=\"6a20b1926c9658ed66bc371947127a8f\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010924/SRR11186550\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-9/SRR11186550/SRR11186550.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-8/SRR11186550/SRR11186550.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"34364285\"><Read index=\"0\" count=\"34364285\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"34364285\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"34364285\"/><Elements count=\"2542957090\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2542957090\"><Base value=\"A\" count=\"645965116\"/><Base value=\"C\" count=\"601387526\"/><Base value=\"G\" count=\"690345517\"/><Base value=\"T\" count=\"605027163\"/><Base value=\"N\" count=\"231768\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340679\" accession=\"SRX7806833\"><IDENTIFIERS><PRIMARY_ID>SRX7806833</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340679: pmk-1(km25) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJNA608907</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6219868\"><IDENTIFIERS><PRIMARY_ID>SRS6219868</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213082</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340679</ID><LABEL>GSM4340679</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340679</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA608907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE145983</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE145983</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4340679\" accession=\"SRS6219868\"><IDENTIFIERS><PRIMARY_ID>SRS6219868</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213082</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340679</EXTERNAL_ID></IDENTIFIERS><TITLE>pmk-1(km25) total mRNA Replicate 2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>608907</ID><LABEL>PRJNA608907</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>Stage</TAG><VALUE>L3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>pmk-1(km25)</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6219868\" sample_name=\"GSM4340679\" sample_title=\"pmk-1(km25) total mRNA Replicate 2\" spots=\"33631873\" bases=\"2488758602\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219868</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213082</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340679</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4340679_r1\" accession=\"SRR11186549\" total_spots=\"33631873\" total_bases=\"2488758602\" size=\"857793145\" load_done=\"true\" published=\"2020-05-05 11:25:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11186549</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7806833\" refname=\"GSM4340679\"/><Pool><Member member_name=\"\" accession=\"SRS6219868\" sample_name=\"GSM4340679\" sample_title=\"pmk-1(km25) total mRNA Replicate 2\" spots=\"33631873\" bases=\"2488758602\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219868</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213082</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340679</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"827866361\" date=\"2020-02-26 13:48:33\" md5=\"0e08699650705024c1d1e5f4cfb673f8\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-14/SRR11186549/PIT2_S9_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-14/SRR11186549/PIT2_S9_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" size=\"835538518\" date=\"2020-02-26 13:48:48\" md5=\"5f833a2714523ce9e9dd38dfa0b03a45\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-14/SRR11186549/PIT2_S9_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-14/SRR11186549/PIT2_S9_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11186549\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/010924/SRR11186549\" size=\"857794670\" date=\"2020-02-26 13:49:17\" md5=\"6573bb0ce40815f86d522da2d26d997e\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/010924/SRR11186549\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-7/SRR11186549/SRR11186549.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-3/SRR11186549/SRR11186549.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"33631873\"><Read index=\"0\" count=\"33631873\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"33631873\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"33631873\"/><Elements count=\"2488758602\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2488758602\"><Base value=\"A\" count=\"658289904\"/><Base value=\"C\" count=\"592704304\"/><Base value=\"G\" count=\"586598856\"/><Base value=\"T\" count=\"650938457\"/><Base value=\"N\" count=\"227081\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340678\" accession=\"SRX7806832\"><IDENTIFIERS><PRIMARY_ID>SRX7806832</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340678: pmk-1(km25)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJNA608907</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6219867\"><IDENTIFIERS><PRIMARY_ID>SRS6219867</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212991</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). 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nreads=\"2\" nspots=\"31063779\"><Read index=\"0\" count=\"31063779\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"31063779\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"31063779\"/><Elements count=\"2298719646\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2298719646\"><Base value=\"A\" count=\"613070283\"/><Base value=\"C\" count=\"539625724\"/><Base value=\"G\" count=\"541625432\"/><Base value=\"T\" count=\"604192088\"/><Base value=\"N\" count=\"206119\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340674\" accession=\"SRX7806828\"><IDENTIFIERS><PRIMARY_ID>SRX7806828</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340674: ced-3(n717)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID 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TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340674</ID><LABEL>GSM4340674</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340674</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA608907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE145983</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE145983</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4340674\" accession=\"SRS6219863\"><IDENTIFIERS><PRIMARY_ID>SRS6219863</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14213086</EXTERNAL_ID><EXTERNAL_ID 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nreads=\"2\" nspots=\"33350365\"><Read index=\"0\" count=\"33350365\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"33350365\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"33350365\"/><Elements count=\"2467927010\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2467927010\"><Base value=\"A\" count=\"623583904\"/><Base value=\"C\" count=\"587738780\"/><Base value=\"G\" count=\"678977835\"/><Base value=\"T\" count=\"577399466\"/><Base value=\"N\" count=\"227025\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340673\" accession=\"SRX7806827\"><IDENTIFIERS><PRIMARY_ID>SRX7806827</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340673: ced-3(n717) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID 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TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340673</ID><LABEL>GSM4340673</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340673</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" 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nreads=\"2\" nspots=\"29791126\"><Read index=\"0\" count=\"29791126\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"29791126\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"29791126\"/><Elements count=\"2204543324\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2204543324\"><Base value=\"A\" count=\"571060725\"/><Base value=\"C\" count=\"508680213\"/><Base value=\"G\" count=\"596572223\"/><Base value=\"T\" count=\"528027307\"/><Base value=\"N\" count=\"202856\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340671\" accession=\"SRX7806825\"><IDENTIFIERS><PRIMARY_ID>SRX7806825</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340671: WT total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID 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TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340671</ID><LABEL>GSM4340671</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340671</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" 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namespace=\"GEO\">GSM4340671</EXTERNAL_ID></IDENTIFIERS><TITLE>WT total mRNA Replicate 2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>608907</ID><LABEL>PRJNA608907</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>Stage</TAG><VALUE>L3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>wild type</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6219860\" sample_name=\"GSM4340671\" sample_title=\"WT total mRNA Replicate 2\" spots=\"30801390\" bases=\"2279302860\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219860</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212994</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340671</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4340671_r1\" accession=\"SRR11186541\" total_spots=\"30801390\" total_bases=\"2279302860\" size=\"784439721\" load_done=\"true\" published=\"2020-05-05 11:25:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11186541</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7806825\" refname=\"GSM4340671\"/><Pool><Member member_name=\"\" accession=\"SRS6219860\" sample_name=\"GSM4340671\" sample_title=\"WT total mRNA Replicate 2\" spots=\"30801390\" bases=\"2279302860\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219860</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212994</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340671</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"763205736\" 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nreads=\"2\" nspots=\"30801390\"><Read index=\"0\" count=\"30801390\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"30801390\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"30801390\"/><Elements count=\"2279302860\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2279302860\"><Base value=\"A\" count=\"605966930\"/><Base value=\"C\" count=\"537228611\"/><Base value=\"G\" count=\"538483468\"/><Base value=\"T\" count=\"597413169\"/><Base value=\"N\" count=\"210682\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340670\" accession=\"SRX7806824\"><IDENTIFIERS><PRIMARY_ID>SRX7806824</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340670: WT RPF Replicate 1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJNA608907</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6219859\"><IDENTIFIERS><PRIMARY_ID>SRS6219859</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212996</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340670</ID><LABEL>GSM4340670</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340670</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA608907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE145983</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE145983</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4340670\" accession=\"SRS6219859\"><IDENTIFIERS><PRIMARY_ID>SRS6219859</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212996</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340670</EXTERNAL_ID></IDENTIFIERS><TITLE>WT RPF Replicate 1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>608907</ID><LABEL>PRJNA608907</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>Stage</TAG><VALUE>L3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>wild type</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6219859\" sample_name=\"GSM4340670\" sample_title=\"WT RPF Replicate 1\" spots=\"31188949\" bases=\"2307982226\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219859</PRIMARY_ID><EXTERNAL_ID 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nreads=\"2\" nspots=\"31188949\"><Read index=\"0\" count=\"31188949\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"31188949\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"31188949\"/><Elements count=\"2307982226\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2307982226\"><Base value=\"A\" count=\"591272930\"/><Base value=\"C\" count=\"540451863\"/><Base value=\"G\" count=\"634630622\"/><Base value=\"T\" count=\"541415940\"/><Base value=\"N\" count=\"210871\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4340669\" accession=\"SRX7806823\"><IDENTIFIERS><PRIMARY_ID>SRX7806823</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4340669: WT total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJNA608907</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS6219858\"><IDENTIFIERS><PRIMARY_ID>SRS6219858</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212997</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>NextSeq 500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304340669</ID><LABEL>GSM4340669</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4340669</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE145983\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA1048439\"><IDENTIFIERS><PRIMARY_ID>SRA1048439</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE145983\" accession=\"SRP250832\"><IDENTIFIERS><PRIMARY_ID>SRP250832</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA608907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE145983</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE145983</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"GSM4340669\" accession=\"SRS6219858\"><IDENTIFIERS><PRIMARY_ID>SRS6219858</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212997</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340669</EXTERNAL_ID></IDENTIFIERS><TITLE>WT total mRNA Replicate 1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>608907</ID><LABEL>PRJNA608907</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>Stage</TAG><VALUE>L3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>genotype</TAG><VALUE>wild type</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS6219858\" sample_name=\"GSM4340669\" sample_title=\"WT total mRNA Replicate 1\" spots=\"33246237\" bases=\"2460221538\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219858</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212997</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340669</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4340669_r1\" accession=\"SRR11186539\" total_spots=\"33246237\" total_bases=\"2460221538\" size=\"847324162\" load_done=\"true\" published=\"2020-05-05 11:25:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR11186539</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7806823\" refname=\"GSM4340669\"/><Pool><Member member_name=\"\" accession=\"SRS6219858\" sample_name=\"GSM4340669\" sample_title=\"WT total mRNA Replicate 1\" spots=\"33246237\" bases=\"2460221538\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS6219858</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN14212997</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4340669</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"823881309\" date=\"2020-02-26 13:47:24\" md5=\"1216516c3cfc6e6eefa686ab2f4de78b\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR11186539/N2T4_S1_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR11186539/N2T4_S1_R1_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" size=\"834413274\" date=\"2020-02-26 13:47:39\" md5=\"3aa78e16336b7c2c0c88df90dd3169bb\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR11186539/N2T4_S1_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR11186539/N2T4_S1_R2_001.fastq.gz.1\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR11186539\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010924/SRR11186539\" size=\"847325690\" date=\"2020-02-26 13:48:27\" md5=\"4cedd6f32ca7e6dcbce9cca9ea5df668\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010924/SRR11186539\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-1/SRR11186539/SRR11186539.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR11186539/SRR11186539.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"33246237\"><Read index=\"0\" count=\"33246237\" average=\"37\" stdev=\"0\"/><Read index=\"1\" count=\"33246237\" average=\"37\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"33246237\"/><Elements count=\"2460221538\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"2460221538\"><Base value=\"A\" count=\"665570748\"/><Base value=\"C\" count=\"562628949\"/><Base value=\"G\" count=\"583277563\"/><Base value=\"T\" count=\"648519197\"/><Base value=\"N\" count=\"225081\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148088\" accession=\"SRX7098753\"><IDENTIFIERS><PRIMARY_ID>SRX7098753</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148088: Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611015\"><IDENTIFIERS><PRIMARY_ID>SRS5611015</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148088</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148088</ID><LABEL>GSM4148088</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148088</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148088\" accession=\"SRS5611015\"><IDENTIFIERS><PRIMARY_ID>SRS5611015</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190923</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148088</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611015\" sample_name=\"GSM4148088\" sample_title=\"Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3\" spots=\"50180090\" bases=\"2509004500\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611015</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190923</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148088</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148088_r1\" accession=\"SRR10398500\" total_spots=\"50180090\" total_bases=\"2509004500\" size=\"1461952152\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398500</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098753\" refname=\"GSM4148088\"/><Pool><Member member_name=\"\" accession=\"SRS5611015\" sample_name=\"GSM4148088\" sample_title=\"Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3\" spots=\"50180090\" bases=\"2509004500\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611015</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190923</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148088</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1\" size=\"1977390816\" date=\"2019-11-06 03:47:46\" md5=\"790a2636a2df58b143c70090c99b119e\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398500\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010154/SRR10398500\" size=\"1461953898\" date=\"2019-11-06 03:48:51\" md5=\"a601ff03e04e3b0de9fa9a2e58441bec\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010154/SRR10398500\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398500/SRR10398500.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398500/SRR10398500.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"50180090\"><Read index=\"0\" count=\"50180090\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2509004500\"><Base value=\"A\" count=\"656429021\"/><Base value=\"C\" count=\"596900728\"/><Base value=\"G\" count=\"610841384\"/><Base value=\"T\" count=\"644796091\"/><Base value=\"N\" count=\"37276\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148087\" accession=\"SRX7098752\"><IDENTIFIERS><PRIMARY_ID>SRX7098752</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148087: Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611014\"><IDENTIFIERS><PRIMARY_ID>SRS5611014</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148087</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148087</ID><LABEL>GSM4148087</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148087</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148087\" accession=\"SRS5611014\"><IDENTIFIERS><PRIMARY_ID>SRS5611014</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190924</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148087</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611014\" sample_name=\"GSM4148087\" sample_title=\"Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2\" spots=\"59848989\" bases=\"2992449450\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611014</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190924</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148087</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148087_r1\" accession=\"SRR10398499\" total_spots=\"59848989\" total_bases=\"2992449450\" size=\"1748019918\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398499</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098752\" refname=\"GSM4148087\"/><Pool><Member member_name=\"\" accession=\"SRS5611014\" sample_name=\"GSM4148087\" sample_title=\"Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2\" spots=\"59848989\" bases=\"2992449450\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611014</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190924</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148087</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1\" size=\"2351880177\" date=\"2019-11-06 03:47:55\" md5=\"7eae8d165cb323700cd05e4fcac15634\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398499\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/010154/SRR10398499\" size=\"1748021666\" date=\"2019-11-06 03:50:30\" md5=\"7505a1f8b4c18b6177570065b4d0642b\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/010154/SRR10398499\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398499/SRR10398499.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398499/SRR10398499.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"59848989\"><Read index=\"0\" count=\"59848989\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2992449450\"><Base value=\"A\" count=\"779513578\"/><Base value=\"C\" count=\"712500026\"/><Base value=\"G\" count=\"731765736\"/><Base value=\"T\" count=\"768626196\"/><Base value=\"N\" count=\"43914\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148086\" accession=\"SRX7098751\"><IDENTIFIERS><PRIMARY_ID>SRX7098751</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148086: Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611013\"><IDENTIFIERS><PRIMARY_ID>SRS5611013</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148086</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148086</ID><LABEL>GSM4148086</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148086</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148086\" accession=\"SRS5611013\"><IDENTIFIERS><PRIMARY_ID>SRS5611013</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190925</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148086</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611013\" sample_name=\"GSM4148086\" sample_title=\"Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1\" spots=\"17823378\" bases=\"891168900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611013</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190925</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148086</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148086_r1\" accession=\"SRR10398498\" total_spots=\"17823378\" total_bases=\"891168900\" size=\"553495038\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398498</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098751\" refname=\"GSM4148086\"/><Pool><Member member_name=\"\" accession=\"SRS5611013\" sample_name=\"GSM4148086\" sample_title=\"Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1\" spots=\"17823378\" bases=\"891168900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611013</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190925</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148086</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee125_meg34_embforFP_TGACCA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1\" size=\"735406084\" date=\"2019-11-06 03:41:44\" md5=\"dfbd152cd1e31d00701a38ce6427ef8b\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398498\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398498\" size=\"553496783\" date=\"2019-11-06 03:42:12\" md5=\"0a34d177ee4ce19c94725aad9d997f7d\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398498\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398498/SRR10398498.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398498/SRR10398498.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"17823378\"><Read index=\"0\" count=\"17823378\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"891168900\"><Base value=\"A\" count=\"236719557\"/><Base value=\"C\" count=\"208649845\"/><Base value=\"G\" count=\"213767928\"/><Base value=\"T\" count=\"231984566\"/><Base value=\"N\" count=\"47004\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148085\" accession=\"SRX7098750\"><IDENTIFIERS><PRIMARY_ID>SRX7098750</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148085: Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611012\"><IDENTIFIERS><PRIMARY_ID>SRS5611012</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148085</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148085</ID><LABEL>GSM4148085</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148085</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148085\" accession=\"SRS5611012\"><IDENTIFIERS><PRIMARY_ID>SRS5611012</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190926</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148085</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611012\" sample_name=\"GSM4148085\" sample_title=\"Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3\" spots=\"64787771\" bases=\"3239388550\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611012</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190926</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148085</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148085_r1\" accession=\"SRR10398497\" total_spots=\"64787771\" total_bases=\"3239388550\" size=\"1883244063\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398497</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098750\" refname=\"GSM4148085\"/><Pool><Member member_name=\"\" accession=\"SRS5611012\" sample_name=\"GSM4148085\" sample_title=\"Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3\" spots=\"64787771\" bases=\"3239388550\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611012</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190926</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148085</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1\" size=\"2529250772\" date=\"2019-11-06 03:45:01\" md5=\"803fdcd6b531067e665f8f18d4fbb9c9\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398497\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/010154/SRR10398497\" size=\"1883245812\" date=\"2019-11-06 03:46:23\" md5=\"6b6e67d3ebb7cf25c89a3ea084a5edc1\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/010154/SRR10398497\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398497/SRR10398497.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398497/SRR10398497.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"64787771\"><Read index=\"0\" count=\"64787771\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"3239388550\"><Base value=\"A\" count=\"856186524\"/><Base value=\"C\" count=\"762830092\"/><Base value=\"G\" count=\"773586474\"/><Base value=\"T\" count=\"846737894\"/><Base value=\"N\" count=\"47566\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148084\" accession=\"SRX7098749\"><IDENTIFIERS><PRIMARY_ID>SRX7098749</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148084: Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611011\"><IDENTIFIERS><PRIMARY_ID>SRS5611011</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148084</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148084</ID><LABEL>GSM4148084</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148084</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148084\" accession=\"SRS5611011\"><IDENTIFIERS><PRIMARY_ID>SRS5611011</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190927</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148084</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611011\" sample_name=\"GSM4148084\" sample_title=\"Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2\" spots=\"54109682\" bases=\"2705484100\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611011</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190927</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148084</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148084_r1\" accession=\"SRR10398496\" total_spots=\"54109682\" total_bases=\"2705484100\" size=\"1574815163\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398496</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098749\" refname=\"GSM4148084\"/><Pool><Member member_name=\"\" accession=\"SRS5611011\" sample_name=\"GSM4148084\" sample_title=\"Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2\" spots=\"54109682\" bases=\"2705484100\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611011</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190927</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148084</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee138_mRNAseqFP_N2_2.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1\" size=\"2151342606\" date=\"2019-11-06 03:42:57\" md5=\"6298f503217039ca51f225c61d385ea1\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398496\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010154/SRR10398496\" size=\"1574816909\" date=\"2019-11-06 03:44:07\" md5=\"e67b12feff28d5c85e641eb84fcd71e9\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010154/SRR10398496\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398496/SRR10398496.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398496/SRR10398496.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"54109682\"><Read index=\"0\" count=\"54109682\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2705484100\"><Base value=\"A\" count=\"715634947\"/><Base value=\"C\" count=\"637414540\"/><Base value=\"G\" count=\"645826922\"/><Base value=\"T\" count=\"706567496\"/><Base value=\"N\" count=\"40195\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148083\" accession=\"SRX7098748\"><IDENTIFIERS><PRIMARY_ID>SRX7098748</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148083: Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611010\"><IDENTIFIERS><PRIMARY_ID>SRS5611010</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148083</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148083</ID><LABEL>GSM4148083</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148083</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148083\" accession=\"SRS5611010\"><IDENTIFIERS><PRIMARY_ID>SRS5611010</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190928</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148083</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribo-Zero treated total RNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611010\" sample_name=\"GSM4148083\" sample_title=\"Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1\" spots=\"53153078\" bases=\"2657653900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611010</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190928</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148083</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148083_r1\" accession=\"SRR10398495\" total_spots=\"53153078\" total_bases=\"2657653900\" size=\"1518355802\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398495</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098748\" refname=\"GSM4148083\"/><Pool><Member member_name=\"\" accession=\"SRS5611010\" sample_name=\"GSM4148083\" sample_title=\"Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1\" spots=\"53153078\" bases=\"2657653900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611010</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190928</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148083</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1\" size=\"2069386069\" date=\"2019-11-06 03:41:56\" md5=\"66243c579988cefc50cb73111ac3cf91\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398495\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/010154/SRR10398495\" size=\"1518357552\" date=\"2019-11-06 03:42:40\" md5=\"e024149ee56beaad1d57bc031784ccb1\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/010154/SRR10398495\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398495/SRR10398495.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398495/SRR10398495.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"53153078\"><Read index=\"0\" count=\"53153078\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2657653900\"><Base value=\"A\" count=\"734420835\"/><Base value=\"C\" count=\"594181567\"/><Base value=\"G\" count=\"603850976\"/><Base value=\"T\" count=\"724928325\"/><Base value=\"N\" count=\"272197\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148082\" accession=\"SRX7098747\"><IDENTIFIERS><PRIMARY_ID>SRX7098747</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148082: Slee135_meg34: meg-3meg-4 Riboseq-3; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611009\"><IDENTIFIERS><PRIMARY_ID>SRS5611009</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148082</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148082</ID><LABEL>GSM4148082</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148082</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148082\" accession=\"SRS5611009\"><IDENTIFIERS><PRIMARY_ID>SRS5611009</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190929</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148082</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee135_meg34: meg-3meg-4 Riboseq-3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611009\" sample_name=\"GSM4148082\" sample_title=\"Slee135_meg34: meg-3meg-4 Riboseq-3\" spots=\"117347118\" bases=\"5867355900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611009</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190929</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148082</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148082_r1\" accession=\"SRR10398494\" total_spots=\"117347118\" total_bases=\"5867355900\" size=\"3430391353\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398494</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098747\" refname=\"GSM4148082\"/><Pool><Member member_name=\"\" accession=\"SRS5611009\" sample_name=\"GSM4148082\" sample_title=\"Slee135_meg34: meg-3meg-4 Riboseq-3\" spots=\"117347118\" bases=\"5867355900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611009</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190929</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148082</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee135_meg34_JP1_CAGATC.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1\" size=\"3923042444\" date=\"2019-11-06 03:49:30\" md5=\"6f256cff8675b5a0b357e4abe569c703\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398494\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398494\" size=\"3430393099\" date=\"2019-11-06 03:51:45\" md5=\"efbc8db63ccb943e5c0fc9276ee2fd72\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398494\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398494/SRR10398494.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398494/SRR10398494.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"117347118\"><Read index=\"0\" count=\"117347118\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"5867355900\"><Base value=\"A\" count=\"1119246168\"/><Base value=\"C\" count=\"1642504211\"/><Base value=\"G\" count=\"1582932236\"/><Base value=\"T\" count=\"1522590689\"/><Base value=\"N\" count=\"82596\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148081\" accession=\"SRX7098746\"><IDENTIFIERS><PRIMARY_ID>SRX7098746</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148081: Slee133_meg34: meg-3meg-4 Riboseq-2; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611008\"><IDENTIFIERS><PRIMARY_ID>SRS5611008</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148081</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148081</ID><LABEL>GSM4148081</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148081</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148081\" accession=\"SRS5611008\"><IDENTIFIERS><PRIMARY_ID>SRS5611008</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190905</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148081</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee133_meg34: meg-3meg-4 Riboseq-2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611008\" sample_name=\"GSM4148081\" sample_title=\"Slee133_meg34: meg-3meg-4 Riboseq-2\" spots=\"107081543\" bases=\"5354077150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611008</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190905</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148081</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148081_r1\" accession=\"SRR10398493\" total_spots=\"107081543\" total_bases=\"5354077150\" size=\"3125393193\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398493</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098746\" refname=\"GSM4148081\"/><Pool><Member member_name=\"\" accession=\"SRS5611008\" sample_name=\"GSM4148081\" sample_title=\"Slee133_meg34: meg-3meg-4 Riboseq-2\" spots=\"107081543\" bases=\"5354077150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611008</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190905</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148081</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee133_meg34_my_ACAGTG.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1\" size=\"3546501643\" date=\"2019-11-06 03:48:29\" md5=\"594d69d056915f2c1bd7e0841b8c35ad\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398493\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010154/SRR10398493\" size=\"3125394939\" date=\"2019-11-06 03:50:32\" md5=\"877ed87637bd8b87e64e48c1e3b3ce8d\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010154/SRR10398493\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398493/SRR10398493.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398493/SRR10398493.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"107081543\"><Read index=\"0\" count=\"107081543\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"5354077150\"><Base value=\"A\" count=\"1005815846\"/><Base value=\"C\" count=\"1505849239\"/><Base value=\"G\" count=\"1424889751\"/><Base value=\"T\" count=\"1417446901\"/><Base value=\"N\" count=\"75413\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148080\" accession=\"SRX7098745\"><IDENTIFIERS><PRIMARY_ID>SRX7098745</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148080: Slee123_meg34: meg-3meg-4 Riboseq-1; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611007\"><IDENTIFIERS><PRIMARY_ID>SRS5611007</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148080</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148080</ID><LABEL>GSM4148080</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148080</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148080\" accession=\"SRS5611007\"><IDENTIFIERS><PRIMARY_ID>SRS5611007</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190906</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148080</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee123_meg34: meg-3meg-4 Riboseq-1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611007\" sample_name=\"GSM4148080\" sample_title=\"Slee123_meg34: meg-3meg-4 Riboseq-1\" spots=\"35703383\" bases=\"1785169150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611007</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190906</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148080</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148080_r1\" accession=\"SRR10398492\" total_spots=\"35703383\" total_bases=\"1785169150\" size=\"867677732\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398492</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098745\" refname=\"GSM4148080\"/><Pool><Member member_name=\"\" accession=\"SRS5611007\" sample_name=\"GSM4148080\" sample_title=\"Slee123_meg34: meg-3meg-4 Riboseq-1\" spots=\"35703383\" bases=\"1785169150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611007</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190906</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148080</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1\" size=\"976731160\" date=\"2019-11-06 03:40:06\" md5=\"de78001ddc02f5395bcdeee23332a076\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398492\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010154/SRR10398492\" size=\"867679482\" date=\"2019-11-06 03:40:50\" md5=\"c5866e045e4fd2597312faf9830c556f\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010154/SRR10398492\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398492/SRR10398492.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398492/SRR10398492.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"35703383\"><Read index=\"0\" count=\"35703383\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"1785169150\"><Base value=\"A\" count=\"364456742\"/><Base value=\"C\" count=\"468615534\"/><Base value=\"G\" count=\"453999771\"/><Base value=\"T\" count=\"497949255\"/><Base value=\"N\" count=\"147848\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148079\" accession=\"SRX7098744\"><IDENTIFIERS><PRIMARY_ID>SRX7098744</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148079: Slee136_N2: wild type Riboseq-3; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611006\"><IDENTIFIERS><PRIMARY_ID>SRS5611006</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148079</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148079</ID><LABEL>GSM4148079</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148079</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148079\" accession=\"SRS5611006\"><IDENTIFIERS><PRIMARY_ID>SRS5611006</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148079</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee136_N2: wild type Riboseq-3</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611006\" sample_name=\"GSM4148079\" sample_title=\"Slee136_N2: wild type Riboseq-3\" spots=\"121439833\" bases=\"6071991650\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611006</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148079</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148079_r1\" accession=\"SRR10398491\" total_spots=\"121439833\" total_bases=\"6071991650\" size=\"3342082520\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398491</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098744\" refname=\"GSM4148079\"/><Pool><Member member_name=\"\" accession=\"SRS5611006\" sample_name=\"GSM4148079\" sample_title=\"Slee136_N2: wild type Riboseq-3\" spots=\"121439833\" bases=\"6071991650\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611006</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190907</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148079</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1\" size=\"3755068572\" date=\"2019-11-06 03:48:35\" md5=\"217d56f396c8074a6eea49e1ec7ee657\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398491\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010154/SRR10398491\" size=\"3342084266\" date=\"2019-11-06 03:50:54\" md5=\"1e9c44b5fcca0f10f46c83e20270f9f3\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010154/SRR10398491\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398491/SRR10398491.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398491/SRR10398491.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"121439833\"><Read index=\"0\" count=\"121439833\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"6071991650\"><Base value=\"A\" count=\"1145148269\"/><Base value=\"C\" count=\"1700523165\"/><Base value=\"G\" count=\"1639975454\"/><Base value=\"T\" count=\"1586261345\"/><Base value=\"N\" count=\"83417\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148078\" accession=\"SRX7098743\"><IDENTIFIERS><PRIMARY_ID>SRX7098743</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148078: Slee132_N2: wild type Riboseq-2; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611005\"><IDENTIFIERS><PRIMARY_ID>SRS5611005</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148078</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148078</ID><LABEL>GSM4148078</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148078</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148078\" accession=\"SRS5611005\"><IDENTIFIERS><PRIMARY_ID>SRS5611005</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190908</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148078</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee132_N2: wild type Riboseq-2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611005\" sample_name=\"GSM4148078\" sample_title=\"Slee132_N2: wild type Riboseq-2\" spots=\"134995957\" bases=\"6749797850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611005</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190908</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148078</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148078_r1\" accession=\"SRR10398490\" total_spots=\"134995957\" total_bases=\"6749797850\" size=\"3934664046\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398490</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098743\" refname=\"GSM4148078\"/><Pool><Member member_name=\"\" accession=\"SRS5611005\" sample_name=\"GSM4148078\" sample_title=\"Slee132_N2: wild type Riboseq-2\" spots=\"134995957\" bases=\"6749797850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611005</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190908</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148078</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee132_N2_2_TGACCA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1\" size=\"4564826338\" date=\"2019-11-06 03:50:29\" md5=\"f16adaedc5f56747b4880f45c8436939\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398490\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010154/SRR10398490\" size=\"3934665793\" date=\"2019-11-06 03:53:04\" md5=\"09968d70669715db1de9b19d0a09fa6e\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010154/SRR10398490\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398490/SRR10398490.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398490/SRR10398490.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"134995957\"><Read index=\"0\" count=\"134995957\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"6749797850\"><Base value=\"A\" count=\"1475636242\"/><Base value=\"C\" count=\"1728625645\"/><Base value=\"G\" count=\"1779005140\"/><Base value=\"T\" count=\"1766436300\"/><Base value=\"N\" count=\"94523\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM4148077\" accession=\"SRX7098742\"><IDENTIFIERS><PRIMARY_ID>SRX7098742</PRIMARY_ID></IDENTIFIERS><TITLE>GSM4148077: Slee111_N2: wild type Riboseq-1; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP228538\" refname=\"GSE139880\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS5611004\"><IDENTIFIERS><PRIMARY_ID>SRS5611004</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148077</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>304148077</ID><LABEL>GSM4148077</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM4148077</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE139880\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA991333\"><IDENTIFIERS><PRIMARY_ID>SRA991333</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE139880\" accession=\"SRP228538\"><IDENTIFIERS><PRIMARY_ID>SRP228538</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA587444</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE139880</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE139880</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>31975687</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA587431</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM4148077\" accession=\"SRS5611004\"><IDENTIFIERS><PRIMARY_ID>SRS5611004</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190909</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148077</EXTERNAL_ID></IDENTIFIERS><TITLE>Slee111_N2: wild type Riboseq-1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>587444</ID><LABEL>PRJNA587444</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>mixed early embryo</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>RNaseI treated Ribo-Zero treated ribosome bound RNA fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS5611004\" sample_name=\"GSM4148077\" sample_title=\"Slee111_N2: wild type Riboseq-1\" spots=\"76408239\" bases=\"3820411950\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611004</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190909</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148077</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM4148077_r1\" accession=\"SRR10398489\" total_spots=\"76408239\" total_bases=\"3820411950\" size=\"1744253035\" load_done=\"true\" published=\"2019-12-02 22:03:20\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR10398489</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX7098742\" refname=\"GSM4148077\"/><Pool><Member member_name=\"\" accession=\"SRS5611004\" sample_name=\"GSM4148077\" sample_title=\"Slee111_N2: wild type Riboseq-1\" spots=\"76408239\" bases=\"3820411950\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS5611004</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN13190909</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM4148077</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz\" url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1\" size=\"1956921843\" date=\"2019-11-06 03:43:04\" md5=\"34689e4808fa6445e982d3ab7d310d95\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://sra-pub-src-2.s3.amazonaws.com/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-src-2/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR10398489\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010154/SRR10398489\" size=\"1744254785\" date=\"2019-11-06 03:44:25\" md5=\"c0667438c003beb26481caae164c64a3\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010154/SRR10398489\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR10398489/SRR10398489.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR10398489/SRR10398489.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"76408239\"><Read index=\"0\" count=\"76408239\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"3820411950\"><Base value=\"A\" count=\"867058546\"/><Base value=\"C\" count=\"968334260\"/><Base value=\"G\" count=\"948800070\"/><Base value=\"T\" count=\"1036199640\"/><Base value=\"N\" count=\"19434\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM3168388\" accession=\"SRX4147684\"><IDENTIFIERS><PRIMARY_ID>SRX4147684</PRIMARY_ID></IDENTIFIERS><TITLE>GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP149446\" refname=\"GSE115161\"><IDENTIFIERS><PRIMARY_ID>SRP149446</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS3361274\"><IDENTIFIERS><PRIMARY_ID>SRS3361274</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM3168388</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Lysates were clarified and monosomes were isolated by sucrose gradient centrifugation after RNaseI treatment. RNA was extracted using SDS/hot phenol/chloroform. Fragments ranging from 15-34 nt were gel purified and rRNA was depleted from this pool through Ribo-Zero Gold treatment. Upon dephosphorylation of sample RNA, linker was ligated and this product was once again gel purified. This was followed by reverse transcription as well as circularization of cDNAs. PCR amplification of this library was then sent for sequencing.</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>303168388</ID><LABEL>GSM3168388</LABEL></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM3168388</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE115161\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA713167\"><IDENTIFIERS><PRIMARY_ID>SRA713167</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">NCBI</Name><Contact email=\"geo-group@ncbi.nlm.nih.gov\"><Name><First>Geo</First><Last>Curators</Last></Name></Contact></Organization><STUDY center_name=\"GEO\" alias=\"GSE115161\" accession=\"SRP149446\"><IDENTIFIERS><PRIMARY_ID>SRP149446</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA473989</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE115161</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4]</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosomes undergo substantial conformational changes during translation elongation to accommodate incoming aminoacyl-tRNAs and translocate along the mRNA template. We used multiple elongation inhibitors and chemical probing to define ribosome conformational states corresponding to different sized ribosome-protected mRNA fragments (RPFs) generated by ribosome profiling. We show using various genetic and environmental perturbations that the previously identified 20-22 nucleotide (nt) RPFs correspond predominantly to ribosomes in a pre-accommodation state with an open 40S ribosomal A site while the classical 27-29 nt fragments correspond to ribosomes in a pre-translocation state with an occupied 40S ribosomal A site. These distinct ribosome conformational states revealed by ribosome profiling are seen in all eukaryotes tested including fungi, worms and mammals. This high-resolution ribosome profiling approach reveals the anticipated Rck2-dependent inhibition of translocation through eEF2 phosphorylation during hyperosmotic stress. These same approaches reveal a strong translation elongation arrest during oxidative stress where the ribosomes are trapped in a pre-translocation state, but in this case the translational arrest is independent of Rck2-driven eEF2 phosphorylation. These results provide new insights and approaches for defining the molecular events that impact translation elongation throughout biology. Overall design: 24 biological samples are included for ribosome footprinting samples. These include HeLa, MB-MDA-231 and yeast cells and C. elegans embryos.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE115161</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA473984</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE alias=\"GSM3168388\" accession=\"SRS3361274\"><IDENTIFIERS><PRIMARY_ID>SRS3361274</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN09288722</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM3168388</EXTERNAL_ID></IDENTIFIERS><TITLE>C. elegans embryos ribosome profiling</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>473989</ID><LABEL>PRJNA473989</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>C. elegans embryos ribosome profiling</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>embryos</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>molecule subtype</TAG><VALUE>Ribosome Protected mRNA (15-34 nt)</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS3361274\" sample_name=\"GSM3168388\" sample_title=\"C. elegans embryos ribosome profiling\" spots=\"76408239\" bases=\"3820411950\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS3361274</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN09288722</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM3168388</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM3168388_r1\" accession=\"SRR7241911\" total_spots=\"76408239\" total_bases=\"3820411950\" size=\"1744253035\" load_done=\"true\" published=\"2019-01-28 15:33:07\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR7241911</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX4147684\" refname=\"GSM3168388\"/><Pool><Member member_name=\"\" accession=\"SRS3361274\" sample_name=\"GSM3168388\" sample_title=\"C. elegans embryos ribosome profiling\" spots=\"76408239\" bases=\"3820411950\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS3361274</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN09288722</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM3168388</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"1956921805\" date=\"2020-02-25 05:08:44\" md5=\"3b6b6a97f17d864fac0ae2c2be7d6552\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-5/SRR7241911/N2.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-5/SRR7241911/N2.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR7241911\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-14/SRR7241911/SRR7241911.1\" size=\"1744254785\" date=\"2018-05-31 12:14:01\" md5=\"224740e2b27a4b736fb1687ccb1a6c1b\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR7241911/SRR7241911.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-14/SRR7241911/SRR7241911.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-4/SRR7241911/SRR7241911.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-4/SRR7241911/SRR7241911.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" 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sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA353604</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans strain:N2 Transcriptome or Gene expression</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Whole Genome Sequencing\"/><STUDY_ABSTRACT>Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"DAUER_0h\" accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>dev_stage</TAG><VALUE>Dauer</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>sex</TAG><VALUE>hermaphrodite</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>whole body</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>BioSampleModel</TAG><VALUE>Model organism or animal</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS1799345\" sample_name=\"DAUER_0h\" spots=\"138903638\" bases=\"6945181900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID 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count=\"1488367505\"/><Base value=\"C\" count=\"1440112663\"/><Base value=\"G\" count=\"2120383213\"/><Base value=\"T\" count=\"1891154950\"/><Base value=\"N\" count=\"5163569\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"Celegans_3h_post_dauer\" accession=\"SRX2352801\"><IDENTIFIERS><PRIMARY_ID>SRX2352801</PRIMARY_ID></IDENTIFIERS><TITLE>Bayesian Prediction of RNA Translation from Ribosome Profiling</TITLE><STUDY_REF accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR 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accession=\"SRA494245\"><IDENTIFIERS><PRIMARY_ID>SRA494245</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\" url=\"http://www.uni-heidelberg.de\"><Name>University Heidelberg</Name><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Contact email=\"christoph.dieterich@med.uni-heidelberg.de\" sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" 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is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR5026603</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX2352801\"/><Pool><Member member_name=\"\" accession=\"SRS1799345\" sample_name=\"DAUER_0h\" spots=\"139378431\" bases=\"6968921550\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"5431691664\" date=\"2020-04-01 07:47:25\" md5=\"e8723fd9a96833bf57d268318a2bbdfd\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-4/SRR5026603/3h.riboseq.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-4/SRR5026603/3h.riboseq.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR5026603\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026603/SRR5026603.1\" size=\"3450861748\" date=\"2016-12-21 10:24:22\" md5=\"c0f444f972b31d7c457490fbc5de6408\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026603/SRR5026603.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026603/SRR5026603.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-3/SRR5026603/SRR5026603.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-3/SRR5026603/SRR5026603.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"139378431\"><Read index=\"0\" count=\"139378431\" average=\"50\" stdev=\"0\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"139378431\"/><Elements count=\"6968921550\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"6968921550\"><Base value=\"A\" count=\"1460936703\"/><Base value=\"C\" count=\"1466941582\"/><Base value=\"G\" count=\"2136536817\"/><Base value=\"T\" count=\"1899352886\"/><Base value=\"N\" count=\"5153562\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"Celegans_2h_post_dauer\" accession=\"SRX2352796\"><IDENTIFIERS><PRIMARY_ID>SRX2352796</PRIMARY_ID></IDENTIFIERS><TITLE>Bayesian Prediction of RNA Translation from Ribosome Profiling</TITLE><STUDY_REF accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>Celegans_2h_post_dauer</LIBRARY_NAME><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION alias=\"Celegans_RPBP\" submission_comment=\"C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling\" center_name=\"University Heidelberg\" lab_name=\"Bioinformatics and Systems Cardiology\" accession=\"SRA494245\"><IDENTIFIERS><PRIMARY_ID>SRA494245</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\" url=\"http://www.uni-heidelberg.de\"><Name>University Heidelberg</Name><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Contact email=\"christoph.dieterich@med.uni-heidelberg.de\" sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA353604</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans strain:N2 Transcriptome or Gene expression</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Whole Genome Sequencing\"/><STUDY_ABSTRACT>Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"DAUER_0h\" accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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accession=\"SRA494245\"><IDENTIFIERS><PRIMARY_ID>SRA494245</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\" url=\"http://www.uni-heidelberg.de\"><Name>University Heidelberg</Name><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Contact email=\"christoph.dieterich@med.uni-heidelberg.de\" sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" 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accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>Celegans_0.5h_post_dauer</LIBRARY_NAME><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION alias=\"Celegans_RPBP\" submission_comment=\"C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling\" center_name=\"University Heidelberg\" lab_name=\"Bioinformatics and Systems Cardiology\" accession=\"SRA494245\"><IDENTIFIERS><PRIMARY_ID>SRA494245</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\" url=\"http://www.uni-heidelberg.de\"><Name>University Heidelberg</Name><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Contact email=\"christoph.dieterich@med.uni-heidelberg.de\" sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA353604</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans strain:N2 Transcriptome or Gene expression</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Whole Genome Sequencing\"/><STUDY_ABSTRACT>Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"DAUER_0h\" accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR5026359</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX2352572\"/><Pool><Member member_name=\"\" accession=\"SRS1799345\" sample_name=\"DAUER_0h\" spots=\"66094062\" bases=\"3304703100\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2524982092\" date=\"2020-04-03 07:38:53\" md5=\"f2ae040a036eef3b6afaa70412779eb4\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-7/SRR5026359/0-5h.riboseq.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-7/SRR5026359/0-5h.riboseq.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile 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location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"66094062\"><Read index=\"0\" count=\"66094062\" average=\"50\" stdev=\"0\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"66094062\"/><Elements count=\"3304703100\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"3304703100\"><Base value=\"A\" count=\"676902968\"/><Base value=\"C\" count=\"711204979\"/><Base value=\"G\" count=\"1023398877\"/><Base value=\"T\" count=\"891840189\"/><Base value=\"N\" count=\"1356087\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"Celegans_0h_post_dauer\" 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accession=\"SRA494245\"><IDENTIFIERS><PRIMARY_ID>SRA494245</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\" url=\"http://www.uni-heidelberg.de\"><Name>University Heidelberg</Name><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Contact email=\"christoph.dieterich@med.uni-heidelberg.de\" sec_email=\"c.dieterich@web.de\"><Address postal_code=\"69120\"><Department>Internal Medicine III</Department><Institution>University Heidelberg</Institution><Street>Im Neuenheimer Feld 669</Street><City>Heidelberg</City><Country>Germany</Country></Address><Name><First>Christoph</First><Last>Dieterich</Last></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA353604\" accession=\"SRP093364\"><IDENTIFIERS><PRIMARY_ID>SRP093364</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA353604</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans strain:N2 Transcriptome or Gene expression</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Whole Genome Sequencing\"/><STUDY_ABSTRACT>Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE alias=\"DAUER_0h\" accession=\"SRS1799345\"><IDENTIFIERS><PRIMARY_ID>SRS1799345</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN06017629</EXTERNAL_ID></IDENTIFIERS><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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accession=\"SRX1626372\"><IDENTIFIERS><PRIMARY_ID>SRX1626372</PRIMARY_ID></IDENTIFIERS><TITLE>unc-54(cc3389) Ribo-seq</TITLE><STUDY_REF accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR accession=\"SRS1335846\"><IDENTIFIERS><PRIMARY_ID>SRS1335846</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>SJA131M</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>30</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"SJA131\" submission_comment=\"SJA131 (unc-54(cc3389))\" center_name=\"Stanford Univerisy\" lab_name=\"Pathology\" accession=\"SRA384301\"><IDENTIFIERS><PRIMARY_ID>SRA384301</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\"><Name>Stanford Univerisy</Name><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Contact email=\"arribere@stanford.edu\" sec_email=\"arribere@stanford.edu\"><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Name><First>Joshua</First><Last>Arribere</Last><Middle>A</Middle></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA297873\" accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA297873</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translation Readthrough Mitigation</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>27281202</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"SJA131\" accession=\"SRS1335846\"><IDENTIFIERS><PRIMARY_ID>SRS1335846</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546343</EXTERNAL_ID></IDENTIFIERS><TITLE>unc-54(cc3389) homozygotes</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>297873</ID><LABEL>PRJNA297873</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>PD3389</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>isolate</TAG><VALUE>unc-54(cc3389)</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>dev_stage</TAG><VALUE>L4</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>sex</TAG><VALUE>hermaphrodite</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>whole organism</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>collection_date</TAG><VALUE>24-Jan-2016</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>growth_protocol</TAG><VALUE>XL NGM plates seeded with OP50</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>BioSampleModel</TAG><VALUE>Model organism or animal</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS1335846\" sample_name=\"SJA131\" 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free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219264/SRR3219264.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-1/SRR3219264/SRR3219264.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR3219264/SRR3219264.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"3200939\"><Read index=\"0\" count=\"3200939\" average=\"55\" stdev=\"0\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"3200939\"/><Elements count=\"176051645\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"176051645\"><Base value=\"A\" count=\"53387587\"/><Base value=\"C\" count=\"42673445\"/><Base value=\"G\" count=\"45536318\"/><Base value=\"T\" count=\"34454295\"/><Base value=\"N\" count=\"0\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"SJA130M\" accession=\"SRX1626361\"><IDENTIFIERS><PRIMARY_ID>SRX1626361</PRIMARY_ID></IDENTIFIERS><TITLE>unc-54(+) Ribo-seq</TITLE><STUDY_REF accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR accession=\"SRS1335837\"><IDENTIFIERS><PRIMARY_ID>SRS1335837</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>SJA130M</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>30</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"SJA130\" submission_comment=\"SJA130 (unc-54(e1301))\" center_name=\"Stanford Univerisy\" lab_name=\"Pathology\" accession=\"SRA384300\"><IDENTIFIERS><PRIMARY_ID>SRA384300</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\"><Name>Stanford Univerisy</Name><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Contact email=\"arribere@stanford.edu\" sec_email=\"arribere@stanford.edu\"><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Name><First>Joshua</First><Last>Arribere</Last><Middle>A</Middle></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA297873\" accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA297873</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translation Readthrough Mitigation</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>27281202</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"SJA130\" accession=\"SRS1335837\"><IDENTIFIERS><PRIMARY_ID>SRS1335837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546334</EXTERNAL_ID></IDENTIFIERS><TITLE>unc-54(e1301) homozygotes</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>297873</ID><LABEL>PRJNA297873</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>PD2013</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>isolate</TAG><VALUE>unc-54(e1301)</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>dev_stage</TAG><VALUE>L4</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>sex</TAG><VALUE>hermaphrodite</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>whole organism</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>collection_date</TAG><VALUE>24-Jan-2016</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>BioSampleModel</TAG><VALUE>Model organism or animal</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS1335837\" sample_name=\"SJA130\" sample_title=\"unc-54(e1301) homozygotes\" spots=\"2845260\" bases=\"156489300\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1335837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546334</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"SJA130M\" accession=\"SRR3219253\" total_spots=\"2845260\" total_bases=\"156489300\" size=\"69990868\" load_done=\"true\" published=\"2016-05-18 14:38:02\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR3219253</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX1626361\"/><Pool><Member member_name=\"\" accession=\"SRS1335837\" sample_name=\"SJA130\" sample_title=\"unc-54(e1301) homozygotes\" spots=\"2845260\" bases=\"156489300\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1335837</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546334</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"479216622\" date=\"2020-04-17 17:07:19\" md5=\"8d6d622e5286d92754253580920f5c2f\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-5/SRR3219253/130M_S4_L001_R1_001.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-5/SRR3219253/130M_S4_L001_R1_001.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR3219253\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219253/SRR3219253.1\" size=\"69991807\" date=\"2016-03-11 14:21:03\" md5=\"437d25fc9650403251fbe2db5375da93\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR3219253/SRR3219253.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219253/SRR3219253.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-1/SRR3219253/SRR3219253.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR3219253/SRR3219253.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"2845260\"><Read index=\"0\" count=\"2845260\" average=\"55\" stdev=\"0\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"2845260\"/><Elements count=\"156489300\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"156489300\"><Base value=\"A\" count=\"47109133\"/><Base value=\"C\" count=\"37898612\"/><Base value=\"G\" count=\"38879415\"/><Base value=\"T\" count=\"32602140\"/><Base value=\"N\" count=\"0\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"SJA129M\" accession=\"SRX1626357\"><IDENTIFIERS><PRIMARY_ID>SRX1626357</PRIMARY_ID></IDENTIFIERS><TITLE>unc-54(+) Ribo-seq</TITLE><STUDY_REF accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR accession=\"SRS1335834\"><IDENTIFIERS><PRIMARY_ID>SRS1335834</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>SJA129M</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>30</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina MiSeq</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"SJA129RZ\" submission_comment=\"SJA129 (unc-54(+))\" center_name=\"Stanford Univerisy\" lab_name=\"Pathology\" accession=\"SRA384295\"><IDENTIFIERS><PRIMARY_ID>SRA384295</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"institute\"><Name>Stanford Univerisy</Name><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Contact email=\"arribere@stanford.edu\" sec_email=\"arribere@stanford.edu\"><Address postal_code=\"94304\"><Department>Pathology</Department><Institution>Stanford Univerisy</Institution><Street>300 Pasteur Drive</Street><City>Stanford</City><Sub>California</Sub><Country>United States of America</Country></Address><Name><First>Joshua</First><Last>Arribere</Last><Middle>A</Middle></Name></Contact></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA297873\" accession=\"SRP064516\"><IDENTIFIERS><PRIMARY_ID>SRP064516</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA297873</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Translation Readthrough Mitigation</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>27281202</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"SJA129\" accession=\"SRS1335834\"><IDENTIFIERS><PRIMARY_ID>SRS1335834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546333</EXTERNAL_ID></IDENTIFIERS><TITLE>unc-54(+) homozygotes</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>297873</ID><LABEL>PRJNA297873</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>VC2010</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>isolate</TAG><VALUE>PD1074</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>dev_stage</TAG><VALUE>L4</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>sex</TAG><VALUE>hermaphrodite</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>tissue</TAG><VALUE>whole organism</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>collection_date</TAG><VALUE>24-Jan-2016</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>growth_protocol</TAG><VALUE>XL NGM plates seeded with OP50</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>BioSampleModel</TAG><VALUE>Model organism or animal</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS1335834\" sample_name=\"SJA129\" sample_title=\"unc-54(+) homozygotes\" spots=\"3407482\" bases=\"187411510\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1335834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546333</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"SJA129M\" accession=\"SRR3219248\" total_spots=\"3407482\" total_bases=\"187411510\" size=\"84664325\" load_done=\"true\" published=\"2016-05-18 14:37:55\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR3219248</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX1626357\"/><Pool><Member member_name=\"\" accession=\"SRS1335834\" sample_name=\"SJA129\" sample_title=\"unc-54(+) homozygotes\" spots=\"3407482\" bases=\"187411510\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS1335834</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN04546333</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"573910581\" date=\"2020-04-17 14:07:17\" md5=\"e10d5eada3dff418ce3a9ab606dbc8a6\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-6/SRR3219248/129M_S2_L001_R1_001.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-6/SRR3219248/129M_S2_L001_R1_001.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR3219248\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219248/SRR3219248.1\" size=\"84665264\" date=\"2016-03-11 14:23:41\" md5=\"09976d20d5fafb0b5d2b76d4ebddf427\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR3219248/SRR3219248.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219248/SRR3219248.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-1/SRR3219248/SRR3219248.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR3219248/SRR3219248.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"3407482\"><Read index=\"0\" count=\"3407482\" average=\"55\" stdev=\"0\"/><Read index=\"1\" count=\"0\" average=\"0\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"3407482\"/><Elements count=\"187411510\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"187411510\"><Base value=\"A\" count=\"57094872\"/><Base value=\"C\" count=\"44809730\"/><Base value=\"G\" count=\"46994910\"/><Base value=\"T\" count=\"38511998\"/><Base value=\"N\" count=\"0\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611598\" accession=\"SRX878014\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878014</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611598: frac_26-34nt; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845968\"><IDENTIFIERS><PRIMARY_ID>SRS845968</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611598</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611598</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611598</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611598</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611598</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611598\" accession=\"SRS845968\"><IDENTIFIERS><PRIMARY_ID>SRS845968</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349121</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611598</EXTERNAL_ID></IDENTIFIERS><TITLE>frac_26-34nt</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>275470</ID><LABEL>PRJNA275470</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>age</TAG><VALUE>larval stage 4</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS845968\" sample_name=\"GSM1611598\" sample_title=\"frac_26-34nt\" spots=\"50364078\" bases=\"2518203900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845968</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349121</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611598</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1611598_r1\" accession=\"SRR1804351\" center_name=\"GEO\" total_spots=\"50000000\" total_bases=\"2500000000\" size=\"1532513718\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804351</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878014\" refname=\"GSM1611598\"/><Pool><Member member_name=\"\" accession=\"SRS845968\" sample_name=\"GSM1611598\" sample_title=\"frac_26-34nt\" spots=\"50000000\" bases=\"2500000000\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845968</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349121</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611598</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2007720705\" date=\"2020-04-30 14:16:06\" md5=\"4705b3e5f6cb66db7234826987570aa9\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR1804351/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR1804351/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804351\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804351/SRR1804351.1\" size=\"1532515463\" date=\"2015-02-14 16:25:44\" md5=\"9ccd957adca3a1c584fd1974666af6d6\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804351/SRR1804351.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804351/SRR1804351.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804351/SRR1804351.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804351/SRR1804351.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"50000000\"><Read index=\"0\" count=\"50000000\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2500000000\"><Base value=\"A\" count=\"493565775\"/><Base value=\"C\" count=\"463995023\"/><Base value=\"G\" count=\"748665620\"/><Base value=\"T\" count=\"708450889\"/><Base value=\"N\" count=\"85322693\"/></Bases></RUN><RUN alias=\"GSM1611598_r2\" accession=\"SRR1804352\" center_name=\"GEO\" total_spots=\"364078\" total_bases=\"18203900\" size=\"9743361\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804352</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878014\" refname=\"GSM1611598\"/><Pool><Member member_name=\"\" accession=\"SRS845968\" sample_name=\"GSM1611598\" sample_title=\"frac_26-34nt\" spots=\"364078\" bases=\"18203900\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845968</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349121</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611598</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"14495316\" date=\"2020-05-02 11:28:44\" md5=\"88970fc3484ce2f9e0e771f7ae750437\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR1804352/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_002.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-9/SRR1804352/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_002.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804352\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804352/SRR1804352.1\" size=\"9745113\" date=\"2015-02-14 16:18:00\" md5=\"b76dc871990ec82537e86b8b3b32865a\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804352/SRR1804352.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804352/SRR1804352.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804352/SRR1804352.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804352/SRR1804352.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"364078\"><Read index=\"0\" count=\"364078\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"18203900\"><Base value=\"A\" count=\"3660196\"/><Base value=\"C\" count=\"3327131\"/><Base value=\"G\" count=\"4865116\"/><Base value=\"T\" count=\"4165799\"/><Base value=\"N\" count=\"2185658\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611597\" accession=\"SRX878013\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878013</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611597: frac_28-35nt; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845969\"><IDENTIFIERS><PRIMARY_ID>SRS845969</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611597</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611597</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611597</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611597</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611597</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611597\" accession=\"SRS845969\"><IDENTIFIERS><PRIMARY_ID>SRS845969</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349117</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611597</EXTERNAL_ID></IDENTIFIERS><TITLE>frac_28-35nt</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804350/SRR1804350.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804350/SRR1804350.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"16596977\"><Read index=\"0\" count=\"16596977\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"829848850\"><Base value=\"A\" count=\"156977287\"/><Base value=\"C\" count=\"143696069\"/><Base value=\"G\" count=\"262360391\"/><Base value=\"T\" count=\"266678067\"/><Base value=\"N\" count=\"137036\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611596\" accession=\"SRX878012\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878012</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611596: frac_28-30nt; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845970\"><IDENTIFIERS><PRIMARY_ID>SRS845970</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611596</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611596</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611596</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611596</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611596</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611596\" accession=\"SRS845970\"><IDENTIFIERS><PRIMARY_ID>SRS845970</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349114</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611596</EXTERNAL_ID></IDENTIFIERS><TITLE>frac_28-30nt</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>275470</ID><LABEL>PRJNA275470</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>age</TAG><VALUE>larval stage 4</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS845970\" sample_name=\"GSM1611596\" sample_title=\"frac_28-30nt\" spots=\"46376697\" bases=\"2318834850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845970</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349114</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611596</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1611596_r1\" accession=\"SRR1804348\" center_name=\"GEO\" total_spots=\"46376697\" total_bases=\"2318834850\" size=\"1564322597\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804348</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878012\" refname=\"GSM1611596\"/><Pool><Member member_name=\"\" accession=\"SRS845970\" sample_name=\"GSM1611596\" sample_title=\"frac_28-30nt\" spots=\"46376697\" bases=\"2318834850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845970</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349114</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611596</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2142088366\" date=\"2020-05-02 03:17:53\" md5=\"7e0162e86a03801a5f4dd28ac558c182\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR1804348/BSSE_QGF_10855_130208_SN792_0204_BD1W0VACXX_8_CGATGT_L008_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-9/SRR1804348/BSSE_QGF_10855_130208_SN792_0204_BD1W0VACXX_8_CGATGT_L008_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804348\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804348/SRR1804348.1\" size=\"1564324341\" date=\"2015-02-24 15:26:37\" md5=\"02d1470fa0e2140fda0c05230720c2ac\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR1804348/SRR1804348.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804348/SRR1804348.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-1/SRR1804348/SRR1804348.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-1/SRR1804348/SRR1804348.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"46376697\"><Read index=\"0\" count=\"46376697\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2318834850\"><Base value=\"A\" count=\"516028598\"/><Base value=\"C\" count=\"491769070\"/><Base value=\"G\" count=\"705903773\"/><Base value=\"T\" count=\"604819351\"/><Base value=\"N\" count=\"314058\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611595\" accession=\"SRX878011\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878011</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611595: frac_25-30nt; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845971\"><IDENTIFIERS><PRIMARY_ID>SRS845971</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611595</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. 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We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611595\" accession=\"SRS845971\"><IDENTIFIERS><PRIMARY_ID>SRS845971</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349115</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611595</EXTERNAL_ID></IDENTIFIERS><TITLE>frac_25-30nt</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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count=\"49597\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611594\" accession=\"SRX878010\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878010</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611594: 04_N2_893_GCkit; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845972\"><IDENTIFIERS><PRIMARY_ID>SRS845972</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611594</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611594</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611594</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611594</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611594</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611594\" accession=\"SRS845972\"><IDENTIFIERS><PRIMARY_ID>SRS845972</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349119</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611594</EXTERNAL_ID></IDENTIFIERS><TITLE>04_N2_893_GCkit</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>275470</ID><LABEL>PRJNA275470</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>age</TAG><VALUE>young adult</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS845972\" sample_name=\"GSM1611594\" sample_title=\"04_N2_893_GCkit\" spots=\"48751368\" bases=\"2486319768\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845972</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349119</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611594</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1611594_r1\" accession=\"SRR1804345\" center_name=\"GEO\" total_spots=\"48751368\" total_bases=\"2486319768\" size=\"1774440563\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804345</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878010\" refname=\"GSM1611594\"/><Pool><Member member_name=\"\" accession=\"SRS845972\" sample_name=\"GSM1611594\" sample_title=\"04_N2_893_GCkit\" spots=\"48751368\" bases=\"2486319768\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845972</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349119</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611594</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2460852885\" date=\"2020-05-02 15:44:38\" md5=\"4e6511cbb0918b73e747f16dd8e73077\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-12/SRR1804345/BSSE_QGF_15362_131114_SN792_0291_BC35TGACXX_3_CTTGTAA_L003_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-12/SRR1804345/BSSE_QGF_15362_131114_SN792_0291_BC35TGACXX_3_CTTGTAA_L003_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804345\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804345/SRR1804345.1\" size=\"1774442308\" date=\"2015-02-14 16:24:48\" md5=\"ab6823807294a56c0a88805ee471cc18\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804345/SRR1804345.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804345/SRR1804345.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804345/SRR1804345.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804345/SRR1804345.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"48751368\"><Read index=\"0\" count=\"48751368\" average=\"51\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2486319768\"><Base value=\"A\" count=\"730345497\"/><Base value=\"C\" count=\"566080787\"/><Base value=\"G\" count=\"702045096\"/><Base value=\"T\" count=\"487492687\"/><Base value=\"N\" count=\"355701\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611593\" accession=\"SRX878009\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878009</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611593: 03_N2_893_SGkit; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845973\"><IDENTIFIERS><PRIMARY_ID>SRS845973</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611593</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. 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We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611593\" accession=\"SRS845973\"><IDENTIFIERS><PRIMARY_ID>SRS845973</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349116</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611593</EXTERNAL_ID></IDENTIFIERS><TITLE>03_N2_893_SGkit</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis 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count=\"78778\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611592\" accession=\"SRX878008\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878008</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611592: 02_N2_893_GCop; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845974\"><IDENTIFIERS><PRIMARY_ID>SRS845974</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611592</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611592</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611592</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611592</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611592</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611592\" accession=\"SRS845974\"><IDENTIFIERS><PRIMARY_ID>SRS845974</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349120</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611592</EXTERNAL_ID></IDENTIFIERS><TITLE>02_N2_893_GCop</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>275470</ID><LABEL>PRJNA275470</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>age</TAG><VALUE>young adult</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS845974\" sample_name=\"GSM1611592\" sample_title=\"02_N2_893_GCop\" spots=\"52891603\" bases=\"2697471753\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845974</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349120</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611592</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1611592_r1\" accession=\"SRR1804341\" center_name=\"GEO\" total_spots=\"50000000\" total_bases=\"2550000000\" 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free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR1804341/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804341\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804341/SRR1804341.1\" size=\"1798512186\" date=\"2015-02-14 16:27:11\" md5=\"b3aac1263865f9139a02f74fc90eff98\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804341/SRR1804341.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804341/SRR1804341.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804341/SRR1804341.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804341/SRR1804341.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"50000000\"><Read index=\"0\" count=\"50000000\" average=\"51\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2550000000\"><Base value=\"A\" count=\"602084863\"/><Base value=\"C\" count=\"537944306\"/><Base value=\"G\" count=\"778317239\"/><Base value=\"T\" count=\"631018166\"/><Base value=\"N\" count=\"635426\"/></Bases></RUN><RUN alias=\"GSM1611592_r2\" accession=\"SRR1804342\" center_name=\"GEO\" total_spots=\"2891603\" total_bases=\"147471753\" size=\"107864653\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804342</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878008\" refname=\"GSM1611592\"/><Pool><Member member_name=\"\" accession=\"SRS845974\" sample_name=\"GSM1611592\" sample_title=\"02_N2_893_GCop\" spots=\"2891603\" bases=\"147471753\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845974</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349120</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611592</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"150651832\" date=\"2020-04-30 01:47:37\" md5=\"7fedae726a673ec501483438c64949c2\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR1804342/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_002.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR1804342/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_002.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804342\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804342/SRR1804342.1\" size=\"107866400\" date=\"2015-02-14 16:18:20\" md5=\"c7d0fd1f23e7dcc60b5dd1bb230be773\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804342/SRR1804342.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804342/SRR1804342.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR1804342/SRR1804342.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR1804342/SRR1804342.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"2891603\"><Read index=\"0\" count=\"2891603\" average=\"51\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"147471753\"><Base value=\"A\" count=\"34930898\"/><Base value=\"C\" count=\"31054597\"/><Base value=\"G\" count=\"44976377\"/><Base value=\"T\" count=\"36496913\"/><Base value=\"N\" count=\"12968\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1611591\" accession=\"SRX878007\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX878007</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1611591: 01_N2_893_SGop; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP055039\" refname=\"GSE65948\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS845975\"><IDENTIFIERS><PRIMARY_ID>SRS845975</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611591</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1611591</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611591</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301611591</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1611591</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE65948\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA242099\"><IDENTIFIERS><PRIMARY_ID>SRA242099</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE65948\" accession=\"SRP055039\"><IDENTIFIERS><PRIMARY_ID>SRP055039</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA275470</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE65948</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE65948</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>26102273</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE alias=\"GSM1611591\" accession=\"SRS845975\"><IDENTIFIERS><PRIMARY_ID>SRS845975</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611591</EXTERNAL_ID></IDENTIFIERS><TITLE>01_N2_893_SGop</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>275470</ID><LABEL>PRJNA275470</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>age</TAG><VALUE>young adult</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS845975\" sample_name=\"GSM1611591\" sample_title=\"01_N2_893_SGop\" spots=\"49787580\" bases=\"2539166580\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845975</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611591</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1611591_r1\" accession=\"SRR1804340\" center_name=\"GEO\" total_spots=\"49787580\" total_bases=\"2539166580\" size=\"1806454729\" load_done=\"true\" published=\"2018-02-12 16:55:10\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1804340</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX878007\" refname=\"GSM1611591\"/><Pool><Member member_name=\"\" accession=\"SRS845975\" sample_name=\"GSM1611591\" sample_title=\"01_N2_893_SGop\" spots=\"49787580\" bases=\"2539166580\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS845975</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03349118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1611591</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2556290784\" date=\"2020-04-30 11:03:51\" md5=\"474a19e996e2826ee0cefe7a5957e4aa\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-12/SRR1804340/BSSE_QGF_15358_131114_SN792_0291_BC35TGACXX_3_TGACCAA_L003_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-12/SRR1804340/BSSE_QGF_15358_131114_SN792_0291_BC35TGACXX_3_TGACCAA_L003_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1804340\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804340/SRR1804340.1\" size=\"1806456475\" date=\"2015-02-24 15:35:43\" md5=\"44e8b1174d10bd6aeeb2cf3697c7ba2c\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1804340/SRR1804340.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804340/SRR1804340.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-2/SRR1804340/SRR1804340.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-2/SRR1804340/SRR1804340.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"49787580\"><Read index=\"0\" count=\"49787580\" average=\"51\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2539166580\"><Base value=\"A\" count=\"631766277\"/><Base value=\"C\" count=\"568784013\"/><Base value=\"G\" count=\"744259365\"/><Base value=\"T\" count=\"593770363\"/><Base value=\"N\" count=\"586562\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1534607\" accession=\"SRX747690\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX747690</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1534607: RNASeq_c14_2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP049413\" refname=\"GSE62858\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS734047\"><IDENTIFIERS><PRIMARY_ID>SRS734047</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534607</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1534607</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534607</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301534607</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1534607</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE62858\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA197072\"><IDENTIFIERS><PRIMARY_ID>SRA197072</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE62858\" accession=\"SRP049413\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA265852</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE62858</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>25378320</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA265853</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1534607\" accession=\"SRS734047\"><IDENTIFIERS><PRIMARY_ID>SRS734047</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153517</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534607</EXTERNAL_ID></IDENTIFIERS><TITLE>RNASeq_c14_2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265852</ID><LABEL>PRJNA265852</LABEL></XREF_LINK></SAMPLE_LINK><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265853</ID><LABEL>PRJNA265853</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>time in development</TAG><VALUE>young adults</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>cey-1 (rrr12), cey-4 (ok858) mutant</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS734047\" sample_name=\"GSM1534607\" sample_title=\"RNASeq_c14_2\" spots=\"49019407\" bases=\"2450970350\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734047</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153517</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534607</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1534607_r1\" accession=\"SRR1635379\" center_name=\"GEO\" total_spots=\"49019407\" total_bases=\"2450970350\" size=\"1169023236\" load_done=\"true\" published=\"2015-01-08 16:29:17\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1635379</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF refname=\"GSM1534607\" accession=\"SRX747690\"><IDENTIFIERS/></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS734047\" sample_name=\"GSM1534607\" sample_title=\"RNASeq_c14_2\" spots=\"49019407\" bases=\"2450970350\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734047</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153517</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534607</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2034483190\" date=\"2020-05-11 22:15:14\" md5=\"d08a4ba71328f05abf9a4fd22a0e8bbd\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-12/SRR1635379/134F4-1_140226_D00404_0047_AC3P05ACXX_CTTGTA-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-12/SRR1635379/134F4-1_140226_D00404_0047_AC3P05ACXX_CTTGTA-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1635379\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635379/SRR1635379.1\" size=\"1169024981\" date=\"2014-10-30 12:24:24\" md5=\"dc5e2400fc33421ee4eace3610cbf0c9\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635379/SRR1635379.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635379/SRR1635379.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-4/SRR1635379/SRR1635379.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-4/SRR1635379/SRR1635379.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"49019407\"><Read index=\"0\" count=\"49019407\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2450970350\"><Base value=\"A\" count=\"724865454\"/><Base value=\"C\" count=\"525274064\"/><Base value=\"G\" count=\"588425450\"/><Base value=\"T\" count=\"612290557\"/><Base value=\"N\" count=\"114825\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1534606\" accession=\"SRX747689\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX747689</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1534606: RNASeq_c14_1; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP049413\" refname=\"GSE62858\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS734046\"><IDENTIFIERS><PRIMARY_ID>SRS734046</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534606</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1534606</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534606</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301534606</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1534606</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE62858\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA197072\"><IDENTIFIERS><PRIMARY_ID>SRA197072</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE62858\" accession=\"SRP049413\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA265852</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE62858</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>25378320</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA265853</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1534606\" accession=\"SRS734046\"><IDENTIFIERS><PRIMARY_ID>SRS734046</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153520</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534606</EXTERNAL_ID></IDENTIFIERS><TITLE>RNASeq_c14_1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265852</ID><LABEL>PRJNA265852</LABEL></XREF_LINK></SAMPLE_LINK><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265853</ID><LABEL>PRJNA265853</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>time in development</TAG><VALUE>young adults</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>cey-1 (rrr12), cey-4 (ok858) mutant</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS734046\" sample_name=\"GSM1534606\" sample_title=\"RNASeq_c14_1\" spots=\"63457303\" bases=\"3172865150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734046</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153520</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534606</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1534606_r1\" accession=\"SRR1635378\" center_name=\"GEO\" total_spots=\"63457303\" total_bases=\"3172865150\" size=\"1540925484\" load_done=\"true\" published=\"2015-01-08 16:29:17\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1635378</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF refname=\"GSM1534606\" accession=\"SRX747689\"><IDENTIFIERS/></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS734046\" sample_name=\"GSM1534606\" sample_title=\"RNASeq_c14_1\" spots=\"63457303\" bases=\"3172865150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734046</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153520</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534606</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2669147192\" date=\"2020-05-11 22:15:29\" md5=\"dbb04689976a68a3c812963c2def4061\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR1635378/134F3-1_140226_D00404_0047_AC3P05ACXX_GGCTAC-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR1635378/134F3-1_140226_D00404_0047_AC3P05ACXX_GGCTAC-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1635378\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635378/SRR1635378.1\" size=\"1540927232\" date=\"2014-10-30 12:24:34\" md5=\"c4deababcde0877038b302e6354e9a5b\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635378/SRR1635378.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635378/SRR1635378.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-2/SRR1635378/SRR1635378.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-2/SRR1635378/SRR1635378.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"63457303\"><Read index=\"0\" count=\"63457303\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"3172865150\"><Base value=\"A\" count=\"941279013\"/><Base value=\"C\" count=\"666050996\"/><Base value=\"G\" count=\"777121810\"/><Base value=\"T\" count=\"788266583\"/><Base value=\"N\" count=\"146748\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1534605\" accession=\"SRX747688\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX747688</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1534605: RNASeq_N2_2; Caenorhabditis elegans; RNA-Seq</TITLE><STUDY_REF accession=\"SRP049413\" refname=\"GSE62858\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS734045\"><IDENTIFIERS><PRIMARY_ID>SRS734045</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534605</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1534605</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534605</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301534605</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1534605</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE62858\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA197072\"><IDENTIFIERS><PRIMARY_ID>SRA197072</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE62858\" accession=\"SRP049413\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA265852</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE62858</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>25378320</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA265853</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1534605\" accession=\"SRS734045\"><IDENTIFIERS><PRIMARY_ID>SRS734045</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153515</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534605</EXTERNAL_ID></IDENTIFIERS><TITLE>RNASeq_N2_2</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265852</ID><LABEL>PRJNA265852</LABEL></XREF_LINK></SAMPLE_LINK><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265853</ID><LABEL>PRJNA265853</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>time in development</TAG><VALUE>young adults</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS734045\" sample_name=\"GSM1534605\" sample_title=\"RNASeq_N2_2\" spots=\"54290105\" bases=\"2714505250\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734045</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153515</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534605</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1534605_r1\" accession=\"SRR1635377\" center_name=\"GEO\" total_spots=\"54290105\" total_bases=\"2714505250\" size=\"1318568086\" load_done=\"true\" published=\"2015-01-08 16:29:17\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1635377</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF refname=\"GSM1534605\" accession=\"SRX747688\"><IDENTIFIERS/></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS734045\" sample_name=\"GSM1534605\" sample_title=\"RNASeq_N2_2\" spots=\"54290105\" bases=\"2714505250\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734045</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153515</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534605</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2282314660\" date=\"2020-05-12 19:05:59\" md5=\"49241146db0d25570ae1d12c5a47a277\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR1635377/134F2-1_140226_D00404_0047_AC3P05ACXX_TAGCTT-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR1635377/134F2-1_140226_D00404_0047_AC3P05ACXX_TAGCTT-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1635377\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635377/SRR1635377.1\" size=\"1318569835\" date=\"2014-10-30 12:23:51\" md5=\"c3e1a33280f98045ce8cee56166fbe09\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635377/SRR1635377.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635377/SRR1635377.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-2/SRR1635377/SRR1635377.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-2/SRR1635377/SRR1635377.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"54290105\"><Read index=\"0\" count=\"54290105\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2714505250\"><Base value=\"A\" count=\"805782067\"/><Base value=\"C\" count=\"580966383\"/><Base value=\"G\" count=\"661891020\"/><Base value=\"T\" count=\"665740849\"/><Base value=\"N\" count=\"124931\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1534604\" accession=\"SRX747687\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX747687</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1534604: RNASeq_N2_1; 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Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample GSM1534604</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534604</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301534604</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1534604</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE62858\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA197072\"><IDENTIFIERS><PRIMARY_ID>SRA197072</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE62858\" accession=\"SRP049413\"><IDENTIFIERS><PRIMARY_ID>SRP049413</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA265852</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE62858</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq)</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Transcriptome Analysis\"/><STUDY_ABSTRACT>We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>25378320</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>parent_bioproject</TAG><VALUE>PRJNA265853</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1534604\" accession=\"SRS734044\"><IDENTIFIERS><PRIMARY_ID>SRS734044</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153516</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534604</EXTERNAL_ID></IDENTIFIERS><TITLE>RNASeq_N2_1</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_LINKS><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265852</ID><LABEL>PRJNA265852</LABEL></XREF_LINK></SAMPLE_LINK><SAMPLE_LINK><XREF_LINK><DB>bioproject</DB><ID>265853</ID><LABEL>PRJNA265853</LABEL></XREF_LINK></SAMPLE_LINK></SAMPLE_LINKS><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>Whole-worm</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>time in development</TAG><VALUE>young adults</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS734044\" sample_name=\"GSM1534604\" sample_title=\"RNASeq_N2_1\" spots=\"64579253\" bases=\"3228962650\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734044</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153516</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534604</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1534604_r1\" accession=\"SRR1635376\" center_name=\"GEO\" total_spots=\"64579253\" total_bases=\"3228962650\" size=\"1537362492\" load_done=\"true\" published=\"2015-01-08 16:29:17\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR1635376</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF refname=\"GSM1534604\" accession=\"SRX747687\"><IDENTIFIERS/></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS734044\" sample_name=\"GSM1534604\" sample_title=\"RNASeq_N2_1\" spots=\"64579253\" bases=\"3228962650\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS734044</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN03153516</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSM1534604</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"2663059402\" date=\"2020-05-11 15:28:42\" md5=\"265b4257e5732c4ae710c01bbb52a09e\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR1635376/134F1-1_140226_D00404_0047_AC3P05ACXX_ACAGTG-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR1635376/134F1-1_140226_D00404_0047_AC3P05ACXX_ACAGTG-NoIndex_L007_R1_001.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR1635376\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635376/SRR1635376.1\" size=\"1537364240\" date=\"2014-10-30 12:24:58\" md5=\"6f85936e84108a1753c03881e2e0eca5\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635376/SRR1635376.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635376/SRR1635376.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-2/SRR1635376/SRR1635376.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-2/SRR1635376/SRR1635376.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"64579253\"><Read index=\"0\" count=\"64579253\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"3228962650\"><Base value=\"A\" count=\"941585225\"/><Base value=\"C\" count=\"671517732\"/><Base value=\"G\" count=\"811145455\"/><Base value=\"T\" count=\"804562636\"/><Base value=\"N\" count=\"151602\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1169554\" accession=\"SRX311785\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX311785</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1169554: Celeg-3-FED-RPF; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP026198\" refname=\"GSE48140\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS449537\"><IDENTIFIERS><PRIMARY_ID>SRS449537</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1169554</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169554</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301169554</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1169554</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE48140\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA091389\"><IDENTIFIERS><PRIMARY_ID>SRA091389</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE48140\" accession=\"SRP026198\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA208993</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE48140</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE48140</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>24098135</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1169554\" accession=\"SRS449537\"><IDENTIFIERS><PRIMARY_ID>SRS449537</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209117</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169554</EXTERNAL_ID></IDENTIFIERS><TITLE>Celeg-3-FED-RPF</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>population-whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>developmental stage</TAG><VALUE>L1 fed 3 hours</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>batch</TAG><VALUE>3</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>rna subtype</TAG><VALUE>ribosome protected fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS449537\" sample_name=\"GSM1169554\" sample_title=\"Celeg-3-FED-RPF\" spots=\"20213950\" bases=\"727702200\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449537</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209117</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169554</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns=\"\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"GSM1169554_r1\" center_name=\"GEO\" accession=\"SRR914339\" total_spots=\"20213950\" total_bases=\"727702200\" size=\"446723077\" load_done=\"true\" published=\"2015-07-22 17:03:37\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR914339</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX311785\"><IDENTIFIERS><PRIMARY_ID>SRX311785</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS449537\" sample_name=\"GSM1169554\" sample_title=\"Celeg-3-FED-RPF\" spots=\"20213950\" bases=\"727702200\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449537</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209117</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169554</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"3033418810\" date=\"2020-05-23 14:17:25\" md5=\"8fe3c4b474f3558d5cbec5e427899e7e\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR914339/120223_BRISCOE_0086_BD0PE4ACXX_L2_GCCTAA_pf_renamed.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR914339/120223_BRISCOE_0086_BD0PE4ACXX_L2_GCCTAA_pf_renamed.fastq\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR914339\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914339/SRR914339.2\" size=\"446724822\" date=\"2015-10-22 15:13:15\" md5=\"0f6fe45cf469a5948e1bc1c9f63a505b\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914339/SRR914339.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914339/SRR914339.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-6/SRR914339/SRR914339.2\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-6/SRR914339/SRR914339.2\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"20213950\"><Read index=\"0\" count=\"20213950\" average=\"36\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"727702200\"><Base value=\"A\" count=\"197286514\"/><Base value=\"C\" count=\"134780436\"/><Base value=\"G\" count=\"195169449\"/><Base value=\"T\" count=\"200440095\"/><Base value=\"N\" count=\"25706\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1169553\" accession=\"SRX311784\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX311784</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1169553: Celeg-2-FED-RPF; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP026198\" refname=\"GSE48140\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS449536\"><IDENTIFIERS><PRIMARY_ID>SRS449536</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1169553</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169553</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301169553</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1169553</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE48140\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA091389\"><IDENTIFIERS><PRIMARY_ID>SRA091389</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE48140\" accession=\"SRP026198\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA208993</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE48140</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE48140</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>24098135</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1169553\" accession=\"SRS449536\"><IDENTIFIERS><PRIMARY_ID>SRS449536</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169553</EXTERNAL_ID></IDENTIFIERS><TITLE>Celeg-2-FED-RPF</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>population-whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>developmental stage</TAG><VALUE>L1 fed 3 hours</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>batch</TAG><VALUE>2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>rna subtype</TAG><VALUE>ribosome protected fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS449536\" sample_name=\"GSM1169553\" sample_title=\"Celeg-2-FED-RPF\" spots=\"59233837\" bases=\"2961691850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449536</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169553</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1169553_r1\" accession=\"SRR914338\" center_name=\"GEO\" total_spots=\"59233837\" total_bases=\"2961691850\" size=\"2094108084\" load_done=\"true\" published=\"2013-06-21 16:12:03\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR914338</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX311784\" refname=\"GSM1169553\"><IDENTIFIERS><PRIMARY_ID>SRX311784</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS449536\" sample_name=\"GSM1169553\" sample_title=\"Celeg-2-FED-RPF\" spots=\"59233837\" bases=\"2961691850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449536</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209118</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169553</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR914338\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914338/SRR914338.1\" size=\"2094109832\" date=\"2013-06-20 08:54:39\" md5=\"6af543a293d10d1fba96ccd76fd478bc\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914338/SRR914338.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914338/SRR914338.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-6/SRR914338/SRR914338.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-6/SRR914338/SRR914338.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"59233837\"><Read index=\"0\" count=\"59233837\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2961691850\"><Base value=\"A\" count=\"876926009\"/><Base value=\"C\" count=\"620466445\"/><Base value=\"G\" count=\"815306174\"/><Base value=\"T\" count=\"648831565\"/><Base value=\"N\" count=\"161657\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1169552\" accession=\"SRX311783\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX311783</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1169552: Celeg-1-FED-RPF; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP026198\" refname=\"GSE48140\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS449535\"><IDENTIFIERS><PRIMARY_ID>SRS449535</PRIMARY_ID><EXTERNAL_ID namespace=\"GEO\">GSM1169552</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>OTHER</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>other</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. 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Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. 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Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169550</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301169550</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1169550</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE48140\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA091389\"><IDENTIFIERS><PRIMARY_ID>SRA091389</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY 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label=\"Sample name\">GSM1169550</EXTERNAL_ID></IDENTIFIERS><TITLE>Celeg-2-ST-RPF</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>population-whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>developmental stage</TAG><VALUE>L1 diapause</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>batch</TAG><VALUE>2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>rna subtype</TAG><VALUE>ribosome protected fragments</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS449533\" sample_name=\"GSM1169550\" sample_title=\"Celeg-2-ST-RPF\" spots=\"20851539\" bases=\"750655404\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449533</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209128</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169550</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1169550_r1\" accession=\"SRR914335\" center_name=\"GEO\" total_spots=\"20851539\" total_bases=\"750655404\" size=\"453779681\" load_done=\"true\" published=\"2015-07-22 17:03:37\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR914335</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX311781\" refname=\"GSM1169550\"><IDENTIFIERS><PRIMARY_ID>SRX311781</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS449533\" sample_name=\"GSM1169550\" sample_title=\"Celeg-2-ST-RPF\" spots=\"20851539\" bases=\"750655404\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449533</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209128</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169550</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"536164456\" date=\"2020-05-23 17:10:15\" md5=\"55c7c95acdb366b2905ed1b4498787e9\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR914335/120223_BRISCOE_0086_BD0PE4ACXX_L2_ATTGGC_pf.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR914335/120223_BRISCOE_0086_BD0PE4ACXX_L2_ATTGGC_pf.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR914335\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914335/SRR914335.2\" size=\"453781426\" date=\"2015-10-22 15:14:59\" md5=\"e7622c42ca0227058bd85c7812a94ad3\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914335/SRR914335.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914335/SRR914335.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR914335/SRR914335.2\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR914335/SRR914335.2\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"20851539\"><Read index=\"0\" count=\"20851539\" average=\"36\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"750655404\"><Base value=\"A\" count=\"204267796\"/><Base value=\"C\" count=\"139589333\"/><Base value=\"G\" count=\"202211009\"/><Base value=\"T\" count=\"204559879\"/><Base value=\"N\" count=\"27387\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"GSM1169549\" accession=\"SRX311780\" center_name=\"GEO\"><IDENTIFIERS><PRIMARY_ID>SRX311780</PRIMARY_ID></IDENTIFIERS><TITLE>GSM1169549: Celeg-1-ST-RPF; Caenorhabditis elegans; OTHER</TITLE><STUDY_REF accession=\"SRP026198\" refname=\"GSE48140\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS449532\"><IDENTIFIERS><PRIMARY_ID>SRS449532</PRIMARY_ID><EXTERNAL_ID 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Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. 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Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. 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Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. 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namespace=\"GEO\">GSM1169543</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>cDNA</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><EXPERIMENT_LINKS><EXPERIMENT_LINK><URL_LINK><LABEL>GEO Sample</LABEL><URL>http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169543</URL></URL_LINK></EXPERIMENT_LINK><EXPERIMENT_LINK><XREF_LINK><DB>gds</DB><ID>301169543</ID></XREF_LINK></EXPERIMENT_LINK></EXPERIMENT_LINKS><EXPERIMENT_ATTRIBUTES><EXPERIMENT_ATTRIBUTE><TAG>GEO Accession</TAG><VALUE>GSM1169543</VALUE></EXPERIMENT_ATTRIBUTE></EXPERIMENT_ATTRIBUTES></EXPERIMENT><SUBMISSION alias=\"GEO: GSE48140\" broker_name=\"GEO\" center_name=\"GEO\" submission_comment=\"submission brokered by GEO\" lab_name=\"\" accession=\"SRA091389\"><IDENTIFIERS><PRIMARY_ID>SRA091389</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name abbr=\"GEO\">Gene Expression Omnibus</Name></Organization><STUDY center_name=\"GEO\" alias=\"GSE48140\" accession=\"SRP026198\"><IDENTIFIERS><PRIMARY_ID>SRP026198</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA208993</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\">GSE48140</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq</STUDY_ABSTRACT><CENTER_PROJECT_NAME>GSE48140</CENTER_PROJECT_NAME></DESCRIPTOR><STUDY_LINKS><STUDY_LINK><XREF_LINK><DB>pubmed</DB><ID>24098135</ID></XREF_LINK></STUDY_LINK></STUDY_LINKS></STUDY><SAMPLE center_name=\"GEO\" alias=\"GSM1169543\" accession=\"SRS449591\"><IDENTIFIERS><PRIMARY_ID>SRS449591</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209160</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169543</EXTERNAL_ID></IDENTIFIERS><TITLE>Celeg-1-ST-mRNA</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>source_name</TAG><VALUE>population-whole animal</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>developmental stage</TAG><VALUE>L1 diapause</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>batch</TAG><VALUE>1</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>strain</TAG><VALUE>N2</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>rna subtype</TAG><VALUE>total mRNA</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS449591\" sample_name=\"GSM1169543\" sample_title=\"Celeg-1-ST-mRNA\" spots=\"19452670\" bases=\"972633500\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449591</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209160</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169543</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN alias=\"GSM1169543_r1\" accession=\"SRR914328\" center_name=\"GEO\" total_spots=\"19452670\" total_bases=\"972633500\" size=\"696539703\" load_done=\"true\" published=\"2013-06-21 16:12:03\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR914328</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX311774\" refname=\"GSM1169543\"><IDENTIFIERS><PRIMARY_ID>SRX311774</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS449591\" sample_name=\"GSM1169543\" sample_title=\"Celeg-1-ST-mRNA\" spots=\"19452670\" bases=\"972633500\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS449591</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN02209160</EXTERNAL_ID><EXTERNAL_ID namespace=\"GEO\" label=\"Sample name\">GSM1169543</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"847764171\" date=\"2020-05-23 17:15:29\" md5=\"a20ad51bcab81af751cc739fd6e106c7\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-13/SRR914328/R63-L1-P1-CGTGAT-Sequences.txt.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-13/SRR914328/R63-L1-P1-CGTGAT-Sequences.txt.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR914328\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914328/SRR914328.1\" size=\"696541450\" date=\"2013-06-20 09:03:53\" md5=\"a24773c73c8e4d81e24b0be737e3d07a\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914328/SRR914328.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914328/SRR914328.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR914328/SRR914328.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR914328/SRR914328.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"19452670\"><Read index=\"0\" count=\"19452670\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"972633500\"><Base value=\"A\" count=\"323752472\"/><Base value=\"C\" count=\"208936436\"/><Base value=\"G\" count=\"243562009\"/><Base value=\"T\" count=\"196344958\"/><Base value=\"N\" count=\"37625\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT xmlns=\"\" alias=\"L1 ribosome footprints replicate 4\" center_name=\"Stanford University\" accession=\"SRX160517\"><IDENTIFIERS><PRIMARY_ID>SRX160517</PRIMARY_ID></IDENTIFIERS><TITLE>L1 ribosome footprints replicate 4</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>MS-63</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>58</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><PROCESSING/></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Stadler_Fire_2012\" submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"172256552\" bases=\"9990880016\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L1 ribosome footprints replicate 4\" center_name=\"Stanford University\" accession=\"SRR522897\" total_spots=\"172256552\" total_bases=\"9990880016\" size=\"7089950470\" load_done=\"true\" published=\"2015-07-22 17:07:48\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522897</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160517\"><IDENTIFIERS><PRIMARY_ID>SRX160517</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"172256552\" bases=\"9990880016\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522897\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522897/SRR522897.2\" size=\"7089952215\" date=\"2015-12-07 05:01:00\" md5=\"7e87ba9273ef0bdc84f2cad8410b36f1\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522897/SRR522897.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522897/SRR522897.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-3/SRR522897/SRR522897.2\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-3/SRR522897/SRR522897.2\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"172256552\"><Read index=\"0\" count=\"172256552\" average=\"58\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"9990880016\"><Base value=\"A\" count=\"2742011224\"/><Base value=\"C\" count=\"2329571991\"/><Base value=\"G\" count=\"2626922712\"/><Base value=\"T\" count=\"2229651613\"/><Base value=\"N\" count=\"62722476\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT xmlns=\"\" alias=\"L2 ribosome footprints replicate 2 (seq-replicate)\" center_name=\"Stanford University\" accession=\"SRX160513\"><IDENTIFIERS><PRIMARY_ID>SRX160513</PRIMARY_ID></IDENTIFIERS><TITLE>L2 ribosome footprints replicate 2 (seq-replicate)</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>MS-65</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>58</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><PROCESSING/></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Stadler_Fire_2012\" submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"160368455\" bases=\"9301370390\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L2 ribosome footprints replicate 2 (seq-replicate)\" center_name=\"Stanford University\" accession=\"SRR522895\" total_spots=\"160368455\" total_bases=\"9301370390\" size=\"6099790048\" load_done=\"true\" published=\"2015-07-22 17:07:48\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522895</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160513\"><IDENTIFIERS><PRIMARY_ID>SRX160513</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"160368455\" bases=\"9301370390\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"6540149063\" date=\"2020-06-10 00:30:40\" md5=\"d806388a3edc097ad0fecf5eb1fc18ef\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-11/SRR522895/s_7_all.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-11/SRR522895/s_7_all.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR522895\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522895/SRR522895.2\" size=\"6099791796\" date=\"2015-12-07 04:27:24\" md5=\"dd6fb591e96742c30c76181738c16f4e\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522895/SRR522895.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522895/SRR522895.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-4/SRR522895/SRR522895.2\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-4/SRR522895/SRR522895.2\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"160368455\"><Read index=\"0\" count=\"160368455\" average=\"58\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"9301370390\"><Base value=\"A\" count=\"4395868552\"/><Base value=\"C\" count=\"1355230557\"/><Base value=\"G\" count=\"1585499480\"/><Base value=\"T\" count=\"1906751090\"/><Base value=\"N\" count=\"58020711\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L4 ribosome footprints replicate 1\" center_name=\"Stanford University\" accession=\"SRX160518\"><IDENTIFIERS><PRIMARY_ID>SRX160518</PRIMARY_ID></IDENTIFIERS><TITLE>L4 ribosome footprints replicate 1</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>MS-61</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>58</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><PROCESSING/></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Stadler_Fire_2012\" submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"174693758\" bases=\"10132237964\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L4 ribosome footprints replicate 1\" accession=\"SRR522883\" center_name=\"Stanford University\" total_spots=\"174693758\" total_bases=\"10132237964\" size=\"7204894135\" load_done=\"true\" published=\"2015-07-22 17:07:44\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522883</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160518\"><IDENTIFIERS><PRIMARY_ID>SRX160518</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"174693758\" bases=\"10132237964\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522883\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522883/SRR522883.2\" size=\"7204895879\" date=\"2015-11-27 11:25:57\" md5=\"bf1692c0354cfc5e1bd3ee9590529240\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522883/SRR522883.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522883/SRR522883.2\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-3/SRR522883/SRR522883.2\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-3/SRR522883/SRR522883.2\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"174693758\"><Read index=\"0\" count=\"174693758\" average=\"58\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"10132237964\"><Base value=\"A\" count=\"2899435466\"/><Base 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"20213950\" bases=\"727702200\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L1 ribosome footprints replicate 3\" center_name=\"Stanford University\" accession=\"SRR522896\" total_spots=\"20213950\" total_bases=\"727702200\" size=\"447522447\" load_done=\"true\" published=\"2012-07-18 01:32:11\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522896</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160516\"><IDENTIFIERS><PRIMARY_ID>SRX160516</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"20213950\" bases=\"727702200\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522896\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522896/SRR522896.1\" size=\"447524197\" date=\"2012-07-18 01:31:47\" md5=\"5d40af8fa9a8689e8ac37382e1028424\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522896/SRR522896.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522896/SRR522896.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR522896/SRR522896.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR522896/SRR522896.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"20213950\"><Read index=\"0\" count=\"20213950\" average=\"36\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"727702200\"><Base value=\"A\" count=\"197286514\"/><Base value=\"C\" count=\"134780436\"/><Base value=\"G\" count=\"195169449\"/><Base value=\"T\" count=\"200440095\"/><Base value=\"N\" count=\"25706\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L1 ribosome footprints replicate 2\" center_name=\"Stanford University\" accession=\"SRX160515\"><IDENTIFIERS><PRIMARY_ID>SRX160515</PRIMARY_ID></IDENTIFIERS><TITLE>L1 ribosome footprints replicate 2</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"59233837\" bases=\"2961691850\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L1 ribosome footprints replicate 2\" center_name=\"Stanford University\" accession=\"SRR522872\" total_spots=\"59233837\" total_bases=\"2961691850\" size=\"2096895718\" load_done=\"true\" published=\"2012-07-18 00:47:30\" is_public=\"true\" cluster_name=\"public\" 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url=\"gs://sra-pub-run-5/SRR522872/SRR522872.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"59233837\"><Read index=\"0\" count=\"59233837\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"2961691850\"><Base value=\"A\" count=\"876926009\"/><Base value=\"C\" count=\"620466445\"/><Base value=\"G\" count=\"815306174\"/><Base value=\"T\" count=\"648831565\"/><Base value=\"N\" count=\"161657\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L1 ribosome footprints replicate 1\" center_name=\"Stanford University\" accession=\"SRX160514\"><IDENTIFIERS><PRIMARY_ID>SRX160514</PRIMARY_ID></IDENTIFIERS><TITLE>L1 ribosome footprints replicate 1</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>Celeg_1_FED_RPF</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><PROCESSING/></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Stadler_Fire_2012\" submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"30099263\" bases=\"1504963150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L1 ribosome footprints replicate 1\" center_name=\"Stanford University\" accession=\"SRR522871\" total_spots=\"30099263\" total_bases=\"1504963150\" size=\"1082257308\" load_done=\"true\" published=\"2012-07-18 00:00:00\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522871</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160514\"><IDENTIFIERS><PRIMARY_ID>SRX160514</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"30099263\" bases=\"1504963150\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522871\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522871/SRR522871.1\" size=\"1082259053\" date=\"2012-07-17 18:35:23\" md5=\"cfb65410453b6c7bcabcb0a91e88c732\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522871/SRR522871.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522871/SRR522871.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR522871/SRR522871.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR522871/SRR522871.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"30099263\"><Read index=\"0\" count=\"30099263\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"1504963150\"><Base value=\"A\" count=\"437435234\"/><Base value=\"C\" count=\"323426113\"/><Base value=\"G\" count=\"408129512\"/><Base value=\"T\" count=\"335914160\"/><Base value=\"N\" count=\"58131\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L2 ribosome footprints replicate 3\" center_name=\"Stanford University\" accession=\"SRX160512\"><IDENTIFIERS><PRIMARY_ID>SRX160512</PRIMARY_ID></IDENTIFIERS><TITLE>L2 ribosome footprints replicate 3</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID 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submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"13600895\" bases=\"489632220\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L2 ribosome footprints replicate 2\" center_name=\"Stanford University\" accession=\"SRR522890\" total_spots=\"13600895\" total_bases=\"489632220\" size=\"255011824\" load_done=\"true\" published=\"2012-07-18 00:47:30\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522890</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160511\"><IDENTIFIERS><PRIMARY_ID>SRX160511</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"13600895\" bases=\"489632220\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522890\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522890/SRR522890.1\" size=\"255013573\" date=\"2012-07-17 23:14:00\" md5=\"32ee75d8ec8c0566c453267a8449d973\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522890/SRR522890.1\" 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location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"15787042\"><Read index=\"0\" count=\"15787042\" average=\"36\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"568333512\"><Base value=\"A\" count=\"213302556\"/><Base value=\"C\" count=\"95197758\"/><Base value=\"G\" count=\"114545096\"/><Base value=\"T\" count=\"145268113\"/><Base value=\"N\" count=\"19989\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L4 total RNA-seq\" center_name=\"Stanford University\" accession=\"SRX160293\"><IDENTIFIERS><PRIMARY_ID>SRX160293</PRIMARY_ID></IDENTIFIERS><TITLE>L4 total RNA-seq</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"58539675\" bases=\"2107428300\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"L4 total RNA-seq\" accession=\"SRR522153\" center_name=\"Stanford University\" total_spots=\"58539675\" total_bases=\"2107428300\" size=\"1150293060\" load_done=\"true\" published=\"2015-07-22 17:07:48\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522153</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160293\"><IDENTIFIERS><PRIMARY_ID>SRX160293</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"58539675\" bases=\"2107428300\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"1624101210\" date=\"2020-06-05 16:37:38\" md5=\"442da06a27a22c08904113a0a7ed3c03\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-12/SRR522153/MS_32_L1thruL4_2.fastq.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-12/SRR522153/MS_32_L1thruL4_2.fastq.gz\" free_egress=\"-\" 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID 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count=\"2083199407\"/><Base value=\"N\" count=\"62823946\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L1 mRNA-seq replicate 4\" center_name=\"Stanford University\" accession=\"SRX160157\"><IDENTIFIERS><PRIMARY_ID>SRX160157</PRIMARY_ID></IDENTIFIERS><TITLE>L1 mRNA-seq replicate 4</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>MS_59</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>58</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application 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accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID 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submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"15243931\" bases=\"762196550\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Celeg_2_FED_mRNA\" center_name=\"Stanford University\" accession=\"SRR522010\" total_spots=\"15243931\" total_bases=\"762196550\" size=\"542413430\" load_done=\"true\" published=\"2012-07-18 00:00:00\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522010</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160148\"><IDENTIFIERS><PRIMARY_ID>SRX160148</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"15243931\" bases=\"762196550\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" filename=\"SRR522010\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522010/SRR522010.1\" size=\"542415177\" date=\"2012-07-16 18:49:18\" md5=\"0c907f640bd5b9afb2aa33662a599837\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522010/SRR522010.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522010/SRR522010.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR522010/SRR522010.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR522010/SRR522010.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"15243931\"><Read index=\"0\" count=\"15243931\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"762196550\"><Base value=\"A\" count=\"257860440\"/><Base value=\"C\" count=\"167904092\"/><Base value=\"G\" count=\"189081774\"/><Base value=\"T\" count=\"145968233\"/><Base value=\"N\" count=\"1382011\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE><EXPERIMENT_PACKAGE><EXPERIMENT alias=\"L1_FED_1_mRNA\" center_name=\"Stanford University\" accession=\"SRX160147\"><IDENTIFIERS><PRIMARY_ID>SRX160147</PRIMARY_ID></IDENTIFIERS><TITLE>L1 mRNA-seq replicate 1</TITLE><STUDY_REF accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION/><SAMPLE_DESCRIPTOR accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>Celeg_FED_1_mRNA</LIBRARY_NAME><LIBRARY_STRATEGY>RNA-Seq</LIBRARY_STRATEGY><LIBRARY_SOURCE>TRANSCRIPTOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>unspecified</LIBRARY_SELECTION><LIBRARY_LAYOUT><SINGLE/></LIBRARY_LAYOUT></LIBRARY_DESCRIPTOR><SPOT_DESCRIPTOR><SPOT_DECODE_SPEC><SPOT_LENGTH>50</SPOT_LENGTH><READ_SPEC><READ_INDEX>0</READ_INDEX><READ_CLASS>Application Read</READ_CLASS><READ_TYPE>Forward</READ_TYPE><BASE_COORD>1</BASE_COORD></READ_SPEC></SPOT_DECODE_SPEC></SPOT_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>Illumina HiSeq 2000</INSTRUMENT_MODEL></ILLUMINA></PLATFORM><PROCESSING/></EXPERIMENT><SUBMISSION xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Stadler_Fire_2012\" submission_comment=\"NA\" lab_name=\"Andrew Fire\" center_name=\"Stanford University\" submission_date=\"2012-07-10T15:00:00Z\" accession=\"SRA055804\"><IDENTIFIERS><PRIMARY_ID>SRA055804</PRIMARY_ID></IDENTIFIERS></SUBMISSION><Organization type=\"center\"><Name>STANFORD UNIVERSITY</Name><Contact email=\"mstadler@stanford.edu\"/></Organization><STUDY center_name=\"BioProject\" alias=\"PRJNA170771\" accession=\"SRP014427\"><IDENTIFIERS><PRIMARY_ID>SRP014427</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\" label=\"primary\">PRJNA170771</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Caenorhabditis elegans ribosome profiling of miRNA targets</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Other\"/><STUDY_ABSTRACT>Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets</STUDY_ABSTRACT><CENTER_PROJECT_NAME>Caenorhabditis elegans strain:N2</CENTER_PROJECT_NAME></DESCRIPTOR></STUDY><SAMPLE center_name=\"Stanford University\" alias=\"C. elegans\" accession=\"SRS350385\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS><TITLE>Caenorhabditis elegans</TITLE><SAMPLE_NAME><TAXON_ID>6239</TAXON_ID><SCIENTIFIC_NAME>Caenorhabditis elegans</SCIENTIFIC_NAME></SAMPLE_NAME></SAMPLE><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"14429547\" bases=\"721477350\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" alias=\"Celeg_1_FED_mRNA\" center_name=\"Stanford University\" accession=\"SRR522009\" total_spots=\"14429547\" total_bases=\"721477350\" size=\"516477040\" load_done=\"true\" published=\"2012-07-24 18:22:22\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\"><IDENTIFIERS><PRIMARY_ID>SRR522009</PRIMARY_ID></IDENTIFIERS><EXPERIMENT_REF accession=\"SRX160147\"><IDENTIFIERS><PRIMARY_ID>SRX160147</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><Pool><Member member_name=\"\" accession=\"SRS350385\" sample_name=\"C. elegans\" sample_title=\"Caenorhabditis elegans\" spots=\"14429547\" bases=\"721477350\" tax_id=\"6239\" organism=\"Caenorhabditis elegans\"><IDENTIFIERS><PRIMARY_ID>SRS350385</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMN01090422</EXTERNAL_ID></IDENTIFIERS></Member></Pool><SRAFiles><SRAFile cluster=\"public\" size=\"612472957\" date=\"2020-06-09 06:05:26\" md5=\"eafcd43edebc8929eb80025d386b4049\" semantic_name=\"fastq\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"gs://sra-pub-src-9/SRR522009/R63-L3-P3-ACATCG-Sequences.txt.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"GCP\"/><Alternatives url=\"s3://sra-pub-src-9/SRR522009/R63-L3-P3-ACATCG-Sequences.txt.gz\" free_egress=\"-\" access_type=\"Use Cloud Data Delivery\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"SRR522009\" url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522009/SRR522009.1\" size=\"516478781\" date=\"2012-07-24 18:21:47\" md5=\"6c5960720cf3667250c78c77086773ff\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522009/SRR522009.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522009/SRR522009.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-5/SRR522009/SRR522009.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-5/SRR522009/SRR522009.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"fastq\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"fastq\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"1\" nspots=\"14429547\"><Read index=\"0\" count=\"14429547\" average=\"50\" stdev=\"0\"/></Statistics><Bases cs_native=\"false\" count=\"721477350\"><Base value=\"A\" count=\"239948923\"/><Base value=\"C\" count=\"155621308\"/><Base value=\"G\" count=\"184391141\"/><Base value=\"T\" count=\"140211023\"/><Base value=\"N\" count=\"1304955\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE></EXPERIMENT_PACKAGE_SET>\n"
  },
  {
    "path": "tests/data/test_search/sra_test_2_verbosity_0.csv",
    "content": "run_accession\nERR4229796\n"
  },
  {
    "path": "tests/data/test_search/sra_test_2_verbosity_1.csv",
    "content": "run_accession,experiment_title\nERR4229796,HiSeq X Ten paired end sequencing\n"
  },
  {
    "path": "tests/data/test_search/sra_test_2_verbosity_2.csv",
    "content": "study_accession,experiment_accession,experiment_title,sample_taxon_id,sample_scientific_name,experiment_library_strategy,experiment_library_source,experiment_library_selection,sample_accession,sample_alias,experiment_instrument_model,pool_member_spots,run_1_size,run_1_accession,run_1_total_spots,run_1_total_bases\nERP113893,ERX4190585,HiSeq X Ten paired end sequencing,562,Escherichia coli,WGS,GENOMIC,RANDOM,ERS3331676,96c1f848-4c9d-11e9-8292-68b599768938,HiSeq X Ten,1150278,94976452,ERR4229796,1150278,347383956\n"
  },
  {
    "path": "tests/data/test_search/sra_test_2_verbosity_3.csv",
    "content": "study_accession,experiment_accession,experiment_title,sample_taxon_id,sample_scientific_name,experiment_library_strategy,experiment_library_source,experiment_library_selection,sample_accession,sample_alias,experiment_instrument_model,pool_member_spots,run_1_size,run_1_accession,run_1_total_spots,run_1_total_bases,experiment_alias,experiment_design_description,experiment_external_id,experiment_library_construction_protocol,experiment_library_name,experiment_platform,experiment_sample_descriptor_accession,library_layout,library_layout_nominal_length,library_layout_nominal_sdev,pool_external_id,pool_member_accession,pool_member_bases,pool_member_member_name,pool_member_organism,pool_member_sample_name,pool_member_sample_title,pool_member_tax_id,run_1_alias,run_1_assembly,run_1_base_A_count,run_1_base_C_count,run_1_base_G_count,run_1_base_N_count,run_1_base_T_count,run_1_cloudfile_1_filetype,run_1_cloudfile_1_location,run_1_cloudfile_1_provider,run_1_cloudfile_2_filetype,run_1_cloudfile_2_location,run_1_cloudfile_2_provider,run_1_cloudfile_3_filetype,run_1_cloudfile_3_location,run_1_cloudfile_3_provider,run_1_cloudfile_4_filetype,run_1_cloudfile_4_location,run_1_cloudfile_4_provider,run_1_cluster_name,run_1_database_1,run_1_is_public,run_1_load_done,run_1_published,run_1_srafile_1_alternative_1_access_type,run_1_srafile_1_alternative_1_free_egress,run_1_srafile_1_alternative_1_org,run_1_srafile_1_alternative_1_url,run_1_srafile_1_alternative_2_access_type,run_1_srafile_1_alternative_2_free_egress,run_1_srafile_1_alternative_2_org,run_1_srafile_1_alternative_2_url,run_1_srafile_1_cluster,run_1_srafile_1_date,run_1_srafile_1_filename,run_1_srafile_1_md5,run_1_srafile_1_semantic_name,run_1_srafile_1_size,run_1_srafile_1_sratoolkit,run_1_srafile_1_supertype,run_1_srafile_1_url,run_1_srafile_2_alternative_1_access_type,run_1_srafile_2_alternative_1_free_egress,run_1_srafile_2_alternative_1_org,run_1_srafile_2_alternative_1_url,run_1_srafile_2_alternative_2_access_type,run_1_srafile_2_alternative_2_free_egress,run_1_srafile_2_alternative_2_org,run_1_srafile_2_alternative_2_url,run_1_srafile_2_alternative_3_access_type,run_1_srafile_2_alternative_3_free_egress,run_1_srafile_2_alternative_3_org,run_1_srafile_2_alternative_3_url,run_1_srafile_2_cluster,run_1_srafile_2_date,run_1_srafile_2_filename,run_1_srafile_2_md5,run_1_srafile_2_semantic_name,run_1_srafile_2_size,run_1_srafile_2_sratoolkit,run_1_srafile_2_supertype,run_1_srafile_2_url,run_1_srafile_3_alternative_1_access_type,run_1_srafile_3_alternative_1_free_egress,run_1_srafile_3_alternative_1_org,run_1_srafile_3_alternative_1_url,run_1_srafile_3_cluster,run_1_srafile_3_date,run_1_srafile_3_filename,run_1_srafile_3_md5,run_1_srafile_3_semantic_name,run_1_srafile_3_size,run_1_srafile_3_sratoolkit,run_1_srafile_3_supertype,run_1_srafile_3_url,run_1_srafile_4_alternative_1_access_type,run_1_srafile_4_alternative_1_free_egress,run_1_srafile_4_alternative_1_org,run_1_srafile_4_alternative_1_url,run_1_srafile_4_cluster,run_1_srafile_4_date,run_1_srafile_4_filename,run_1_srafile_4_md5,run_1_srafile_4_semantic_name,run_1_srafile_4_size,run_1_srafile_4_sratoolkit,run_1_srafile_4_supertype,run_1_srafile_4_url,run_1_static_data_available,run_1_total_base_count,run_1_total_base_cs_native,sample_attributes_1_tag,sample_attributes_1_value,sample_attributes_2_tag,sample_attributes_2_value,sample_attributes_3_tag,sample_attributes_3_value,sample_attributes_4_tag,sample_attributes_4_value,sample_center_name,sample_common_name,sample_external_id_1,sample_external_id_1_namespace,sample_taxon_id,sample_title,study_alias,study_attributes_1_tag,study_attributes_1_value,study_attributes_2_tag,study_attributes_2_value,study_center_name,study_external_id_1,study_external_id_1_namespace,study_study_abstract,study_study_description,study_study_title,study_study_type_existing_study_type,submission_accession,submission_alias,submission_lab_name,submission_title\nERP113893,ERX4190585,HiSeq X Ten paired end sequencing,562,Escherichia coli,WGS,GENOMIC,RANDOM,ERS3331676,96c1f848-4c9d-11e9-8292-68b599768938,HiSeq X Ten,1150278,94976452,ERR4229796,1150278,347383956,SC_EXP_29694_1#382,\"Illumina sequencing of library DN539314J:H12, constructed from sample accession ERS3331676 for study accession ERP113893.  This is part of an Illumina multiplexed sequencing run (29694_1).  This submission includes reads tagged with the sequence TACCATTC.\",SAMEA5529601,Standard,DN539314J:H12,ILLUMINA,ERS3331676,PAIRED,452,121,SAMEA5529601,ERS3331676,347383956,<NA>,Escherichia coli,96c1f848-4c9d-11e9-8292-68b599768938,SB277889442,562,SC_RUN_29694_1#382,GCF_000005845.1,85540613,88241122,88289114,100578,85212529,cram,gs.US,gs,cram,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"PRIMARY_ALIGNMENT\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"1949912\"\" /><Elements count=\"\"294436712\"\" /></Statistics></Table><Table name=\"\"REFERENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"928\"\" /><Elements count=\"\"4639675\"\" /></Statistics></Table><Table name=\"\"SECONDARY_ALIGNMENT\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"6149\"\" /><Elements count=\"\"928499\"\" /></Statistics></Table><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"1150278\"\" /><Elements count=\"\"347383956\"\" /></Statistics></Table></Database>\",true,true,2020-06-10 21:58:01,anonymous,worldwide,GCP,https://storage.googleapis.com/sra-pub-src-14/ERR4229796/29694_1_382.cram.1,anonymous,worldwide,AWS,https://sra-pub-src-14.s3.amazonaws.com/ERR4229796/29694_1_382.cram.1,public,2020-06-11 19:23:25,29694_1_382.cram,26e62fcae91b058b13be6b94214ae2e6,cram,100576829,0,Original,https://sra-pub-src-14.s3.amazonaws.com/ERR4229796/29694_1_382.cram.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERR/ERR4229/ERR4229796,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/ERR4229796/ERR4229796.1,gcp identity,gs.US,GCP,gs://sra-pub-run-4/ERR4229796/ERR4229796.1,public,2020-06-11 19:24:22,ERR4229796,b779862a8fe21d16152454f047fbd2c1,run,94990927,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERR/ERR4229/ERR4229796,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/ERR4229796.realign,public,2020-06-11 19:34:28,ERR4229796.realign,4b45e5e3e6ebe3fa112f308a4d092ee4,run.realign,19534748,1,Secondary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/ERR4229796.realign,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/wgmlst_sig.tsv,public,2020-06-11 19:36:45,wgmlst_sig.tsv,1f83f3039c8d5b17e64cebbd875a38b4,wgmlst_sig,4253484,0,Secondary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/wgmlst_sig.tsv,1,347383956,false,SUBJECT_ID,SB277889442,ArrayExpress-SPECIES,E. coli,ENA-FIRST-PUBLIC,2020-06-09,ENA-LAST-UPDATE,2019-03-22,Wellcome Sanger Institute,E. coli,SAMEA5529601,BioSample,562,SB277889442,Maximizing_the_knowledge_gained_from_California_Senate_Bill_27-sc-5708,ENA-FIRST-PUBLIC,2020-06-02,ENA-LAST-UPDATE,2019-02-19,Wellcome Sanger Institute,PRJEB31347,BioProject,\"Overuse of antibiotics contributes to antimicrobial resistance and is a growing threat to human health worldwide. In the U.S., approximately 70% of antibiotics are sold for use in livestock. On January 1, 2018, California enacted Senate Bill 27 (SB27), which will require a veterinarian's prescription for use of antimicrobial drugs and ban non-therapeutic antimicrobial uses for routine disease prevention and growth promotion in livestock. The project will quantify the effect of SB27 on E. coli, Campylobacter and Salmonella resistance rates from retail meat; estimate the proportion of human Campylobacter, Salmonella, and extraintestinal pathogenic E. coli infections caused by strains of food animal origin in California; characterize the effect of SB27 on antimicrobial susceptibility of Campylobacter, Salmonella, and extraintestinal E. coli infections caused by strains of food animal origin in California.\",\"Overuse of antibiotics contributes to antimicrobial resistance and is a growing threat to human health worldwide. In the U.S., approximately 70% of antibiotics are sold for use in livestock. On January 1, 2018, California enacted Senate Bill 27 (SB27), which will require a veterinarian's prescription for use of antimicrobial drugs and ban non-therapeutic antimicrobial uses for routine disease prevention and growth promotion in livestock. The project will quantify the effect of SB27 on E. coli, Campylobacter and Salmonella resistance rates from retail meat; estimate the proportion of human Campylobacter, Salmonella, and extraintestinal pathogenic E. coli infections caused by strains of food animal origin in California; characterize the effect of SB27 on antimicrobial susceptibility of Campylobacter, Salmonella, and extraintestinal E. coli infections caused by strains of food animal origin in California. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute please see http://www.sanger.ac.uk/datasharing/\",Maximizing_the_knowledge_gained_from_California_Senate_Bill_27,Whole Genome Sequencing,ERA2689537,ERP113893-sc-20200609-1-2020-06-09T15:09:21Z,European Nucleotide Archive,Submitted by Wellcome Sanger Institute on 09-JUN-2020\n"
  },
  {
    "path": "tests/data/test_search/sra_test_ERS3331676.xml",
    "content": "<?xml version=\"1.0\" ?>\n<EXPERIMENT_PACKAGE_SET>\n<EXPERIMENT_PACKAGE><EXPERIMENT accession=\"ERX4190585\" alias=\"SC_EXP_29694_1#382\"><IDENTIFIERS><PRIMARY_ID>ERX4190585</PRIMARY_ID></IDENTIFIERS><TITLE>HiSeq X Ten paired end sequencing</TITLE><STUDY_REF accession=\"ERP113893\"><IDENTIFIERS><PRIMARY_ID>ERP113893</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJEB31347</EXTERNAL_ID></IDENTIFIERS></STUDY_REF><DESIGN><DESIGN_DESCRIPTION>Illumina sequencing of library DN539314J:H12, constructed from sample accession ERS3331676 for study accession ERP113893.  This is part of an Illumina multiplexed sequencing run (29694_1).  This submission includes reads tagged with the sequence TACCATTC.</DESIGN_DESCRIPTION><SAMPLE_DESCRIPTOR accession=\"ERS3331676\"><IDENTIFIERS><PRIMARY_ID>ERS3331676</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMEA5529601</EXTERNAL_ID></IDENTIFIERS></SAMPLE_DESCRIPTOR><LIBRARY_DESCRIPTOR><LIBRARY_NAME>DN539314J:H12</LIBRARY_NAME><LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY><LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE><LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION><LIBRARY_LAYOUT><PAIRED NOMINAL_LENGTH=\"452\" NOMINAL_SDEV=\"121\"/></LIBRARY_LAYOUT><LIBRARY_CONSTRUCTION_PROTOCOL>Standard</LIBRARY_CONSTRUCTION_PROTOCOL></LIBRARY_DESCRIPTOR></DESIGN><PLATFORM><ILLUMINA><INSTRUMENT_MODEL>HiSeq X Ten</INSTRUMENT_MODEL></ILLUMINA></PLATFORM></EXPERIMENT><SUBMISSION accession=\"ERA2689537\" alias=\"ERP113893-sc-20200609-1-2020-06-09T15:09:21Z\" lab_name=\"European Nucleotide Archive\"><IDENTIFIERS><PRIMARY_ID>ERA2689537</PRIMARY_ID></IDENTIFIERS><TITLE>Submitted by Wellcome Sanger Institute on 09-JUN-2020</TITLE></SUBMISSION><Organization type=\"center\"><Name abbr=\"Wellcome Sanger Institute\">Wellcome Sanger Institute</Name></Organization><STUDY accession=\"ERP113893\" alias=\"Maximizing_the_knowledge_gained_from_California_Senate_Bill_27-sc-5708\" center_name=\"Wellcome Sanger Institute\"><IDENTIFIERS><PRIMARY_ID>ERP113893</PRIMARY_ID><EXTERNAL_ID namespace=\"BioProject\">PRJEB31347</EXTERNAL_ID></IDENTIFIERS><DESCRIPTOR><STUDY_TITLE>Maximizing_the_knowledge_gained_from_California_Senate_Bill_27</STUDY_TITLE><STUDY_TYPE existing_study_type=\"Whole Genome Sequencing\"/><STUDY_ABSTRACT>Overuse of antibiotics contributes to antimicrobial resistance and is a growing threat to human health worldwide. In the U.S., approximately 70% of antibiotics are sold for use in livestock. On January 1, 2018, California enacted Senate Bill 27 (SB27), which will require a veterinarian's prescription for use of antimicrobial drugs and ban non-therapeutic antimicrobial uses for routine disease prevention and growth promotion in livestock. The project will quantify the effect of SB27 on E. coli, Campylobacter and Salmonella resistance rates from retail meat; estimate the proportion of human Campylobacter, Salmonella, and extraintestinal pathogenic E. coli infections caused by strains of food animal origin in California; characterize the effect of SB27 on antimicrobial susceptibility of Campylobacter, Salmonella, and extraintestinal E. coli infections caused by strains of food animal origin in California.</STUDY_ABSTRACT><STUDY_DESCRIPTION>Overuse of antibiotics contributes to antimicrobial resistance and is a growing threat to human health worldwide. In the U.S., approximately 70% of antibiotics are sold for use in livestock. On January 1, 2018, California enacted Senate Bill 27 (SB27), which will require a veterinarian's prescription for use of antimicrobial drugs and ban non-therapeutic antimicrobial uses for routine disease prevention and growth promotion in livestock. The project will quantify the effect of SB27 on E. coli, Campylobacter and Salmonella resistance rates from retail meat; estimate the proportion of human Campylobacter, Salmonella, and extraintestinal pathogenic E. coli infections caused by strains of food animal origin in California; characterize the effect of SB27 on antimicrobial susceptibility of Campylobacter, Salmonella, and extraintestinal E. coli infections caused by strains of food animal origin in California. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute please see http://www.sanger.ac.uk/datasharing/</STUDY_DESCRIPTION></DESCRIPTOR><STUDY_ATTRIBUTES><STUDY_ATTRIBUTE><TAG>ENA-FIRST-PUBLIC</TAG><VALUE>2020-06-02</VALUE></STUDY_ATTRIBUTE><STUDY_ATTRIBUTE><TAG>ENA-LAST-UPDATE</TAG><VALUE>2019-02-19</VALUE></STUDY_ATTRIBUTE></STUDY_ATTRIBUTES></STUDY><SAMPLE accession=\"ERS3331676\" alias=\"96c1f848-4c9d-11e9-8292-68b599768938\" center_name=\"Wellcome Sanger Institute\"><IDENTIFIERS><PRIMARY_ID>ERS3331676</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMEA5529601</EXTERNAL_ID></IDENTIFIERS><TITLE>SB277889442</TITLE><SAMPLE_NAME><TAXON_ID>562</TAXON_ID><COMMON_NAME>E. coli</COMMON_NAME><SCIENTIFIC_NAME>Escherichia coli</SCIENTIFIC_NAME></SAMPLE_NAME><SAMPLE_ATTRIBUTES><SAMPLE_ATTRIBUTE><TAG>SUBJECT_ID</TAG><VALUE>SB277889442</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>ArrayExpress-SPECIES</TAG><VALUE>E. coli</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>ENA-FIRST-PUBLIC</TAG><VALUE>2020-06-09</VALUE></SAMPLE_ATTRIBUTE><SAMPLE_ATTRIBUTE><TAG>ENA-LAST-UPDATE</TAG><VALUE>2019-03-22</VALUE></SAMPLE_ATTRIBUTE></SAMPLE_ATTRIBUTES></SAMPLE><Pool><Member member_name=\"\" accession=\"ERS3331676\" sample_name=\"96c1f848-4c9d-11e9-8292-68b599768938\" sample_title=\"SB277889442\" spots=\"1150278\" bases=\"347383956\" tax_id=\"562\" organism=\"Escherichia coli\"><IDENTIFIERS><PRIMARY_ID>ERS3331676</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMEA5529601</EXTERNAL_ID></IDENTIFIERS></Member></Pool><RUN_SET><RUN accession=\"ERR4229796\" alias=\"SC_RUN_29694_1#382\" total_spots=\"1150278\" total_bases=\"347383956\" size=\"94976452\" load_done=\"true\" published=\"2020-06-10 21:58:01\" is_public=\"true\" cluster_name=\"public\" static_data_available=\"1\" assembly=\"GCF_000005845.1\"><IDENTIFIERS><PRIMARY_ID>ERR4229796</PRIMARY_ID></IDENTIFIERS><TITLE>HiSeq X Ten paired end sequencing</TITLE><EXPERIMENT_REF accession=\"ERX4190585\"><IDENTIFIERS><PRIMARY_ID>ERX4190585</PRIMARY_ID></IDENTIFIERS></EXPERIMENT_REF><RUN_ATTRIBUTES><RUN_ATTRIBUTE><TAG>ENA-FIRST-PUBLIC</TAG><VALUE>2020-06-09</VALUE></RUN_ATTRIBUTE><RUN_ATTRIBUTE><TAG>ENA-LAST-UPDATE</TAG><VALUE>2020-06-09</VALUE></RUN_ATTRIBUTE></RUN_ATTRIBUTES><Pool><Member member_name=\"\" accession=\"ERS3331676\" sample_name=\"96c1f848-4c9d-11e9-8292-68b599768938\" sample_title=\"SB277889442\" spots=\"1150278\" bases=\"347383956\" tax_id=\"562\" organism=\"Escherichia coli\"><IDENTIFIERS><PRIMARY_ID>ERS3331676</PRIMARY_ID><EXTERNAL_ID namespace=\"BioSample\">SAMEA5529601</EXTERNAL_ID></IDENTIFIERS></Member></Pool><AlignInfo path=\"/netmnt/traces04/era18/ERR/ERR4229/ERR4229796\" cnt=\"1\"><Alignment name=\"E-coli-K12.fa\" seqid=\"NC_000913.2\" gi=\"49175990\"/></AlignInfo><SRAFiles><SRAFile cluster=\"public\" filename=\"29694_1_382.cram\" url=\"https://sra-pub-src-14.s3.amazonaws.com/ERR4229796/29694_1_382.cram.1\" size=\"100576829\" date=\"2020-06-11 19:23:25\" md5=\"26e62fcae91b058b13be6b94214ae2e6\" semantic_name=\"cram\" supertype=\"Original\" sratoolkit=\"0\"><Alternatives url=\"https://storage.googleapis.com/sra-pub-src-14/ERR4229796/29694_1_382.cram.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"GCP\"/><Alternatives url=\"https://sra-pub-src-14.s3.amazonaws.com/ERR4229796/29694_1_382.cram.1\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"AWS\"/></SRAFile><SRAFile cluster=\"public\" filename=\"ERR4229796\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERR/ERR4229/ERR4229796\" size=\"94990927\" date=\"2020-06-11 19:24:22\" md5=\"b779862a8fe21d16152454f047fbd2c1\" semantic_name=\"run\" supertype=\"Primary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERR/ERR4229/ERR4229796\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/><Alternatives url=\"s3://sra-pub-run-2/ERR4229796/ERR4229796.1\" free_egress=\"s3.us-east-1\" access_type=\"aws identity\" org=\"AWS\"/><Alternatives url=\"gs://sra-pub-run-4/ERR4229796/ERR4229796.1\" free_egress=\"gs.US\" access_type=\"gcp identity\" org=\"GCP\"/></SRAFile><SRAFile cluster=\"public\" filename=\"ERR4229796.realign\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/ERR4229796.realign\" size=\"19534748\" date=\"2020-06-11 19:34:28\" md5=\"4b45e5e3e6ebe3fa112f308a4d092ee4\" semantic_name=\"run.realign\" supertype=\"Secondary ETL\" sratoolkit=\"1\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/ERR4229796.realign\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/></SRAFile><SRAFile cluster=\"public\" filename=\"wgmlst_sig.tsv\" url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/wgmlst_sig.tsv\" size=\"4253484\" date=\"2020-06-11 19:36:45\" md5=\"1f83f3039c8d5b17e64cebbd875a38b4\" semantic_name=\"wgmlst_sig\" supertype=\"Secondary ETL\" sratoolkit=\"0\"><Alternatives url=\"https://sra-download.ncbi.nlm.nih.gov/traces/era18/ERZ/004229/ERR4229796/wgmlst_sig.tsv\" free_egress=\"worldwide\" access_type=\"anonymous\" org=\"NCBI\"/></SRAFile></SRAFiles><CloudFiles><CloudFile filetype=\"cram\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"cram\" provider=\"s3\" location=\"s3.us-east-1\"/><CloudFile filetype=\"run\" provider=\"gs\" location=\"gs.US\"/><CloudFile filetype=\"run\" provider=\"s3\" location=\"s3.us-east-1\"/></CloudFiles><Statistics nreads=\"2\" nspots=\"1150278\"><Read index=\"0\" count=\"1150278\" average=\"151\" stdev=\"0\"/><Read index=\"1\" count=\"1150278\" average=\"151\" stdev=\"0\"/></Statistics><Databases><Database><Table name=\"PRIMARY_ALIGNMENT\"><Statistics source=\"meta\"><Rows count=\"1949912\"/><Elements count=\"294436712\"/></Statistics></Table><Table name=\"REFERENCE\"><Statistics source=\"meta\"><Rows count=\"928\"/><Elements count=\"4639675\"/></Statistics></Table><Table name=\"SECONDARY_ALIGNMENT\"><Statistics source=\"meta\"><Rows count=\"6149\"/><Elements count=\"928499\"/></Statistics></Table><Table name=\"SEQUENCE\"><Statistics source=\"meta\"><Rows count=\"1150278\"/><Elements count=\"347383956\"/></Statistics></Table></Database></Databases><Bases cs_native=\"false\" count=\"347383956\"><Base value=\"A\" count=\"85540613\"/><Base value=\"C\" count=\"88241122\"/><Base value=\"G\" count=\"88289114\"/><Base value=\"T\" count=\"85212529\"/><Base value=\"N\" count=\"100578\"/></Bases></RUN></RUN_SET></EXPERIMENT_PACKAGE></EXPERIMENT_PACKAGE_SET>\n"
  },
  {
    "path": "tests/data/test_search/sra_test_verbosity_0.csv",
    "content": "run_accession\nSRR11217925\nSRR11217924\nSRR11217923\nSRR11217922\nSRR11217921\nSRR11217920\nSRR11217919\nSRR11217918\nSRR11217917\nSRR11217916\nSRR11217915\nSRR11217914\nSRR11186550\nSRR11186549\nSRR11186548\nSRR11186547\nSRR11186546\nSRR11186545\nSRR11186544\nSRR11186543\nSRR11186542\nSRR11186541\nSRR11186540\nSRR11186539\nSRR10398500\nSRR10398499\nSRR10398498\nSRR10398497\nSRR10398496\nSRR10398495\nSRR10398494\nSRR10398493\nSRR10398492\nSRR10398491\nSRR10398490\nSRR10398489\nSRR7241911\nSRR5026637\nSRR5026603\nSRR5026592\nSRR5026589\nSRR5026359\nSRR5026356\nSRR3219264\nSRR3219253\nSRR3219248\nSRR1804351\nSRR1804349\nSRR1804348\nSRR1804346\nSRR1804345\nSRR1804343\nSRR1804341\nSRR1804340\nSRR1635379\nSRR1635378\nSRR1635377\nSRR1635376\nSRR914339\nSRR914338\nSRR914337\nSRR914336\nSRR914335\nSRR914334\nSRR914333\nSRR914332\nSRR914331\nSRR914330\nSRR914329\nSRR914328\nSRR522897\nSRR522895\nSRR522883\nSRR522896\nSRR522872\nSRR522871\nSRR522892\nSRR522890\nSRR522881\nSRR522153\nSRR522152\nSRR522151\nSRR522882\nSRR522888\nSRR522011\nSRR522010\nSRR522009\nSRR1804352\nSRR1804350\nSRR1804347\nSRR1804344\nSRR1804342\n"
  },
  {
    "path": "tests/data/test_search/sra_test_verbosity_1.csv",
    "content": "run_accession,experiment_title\nSRR11217925,GSM4369051: rnaH27nsun3; Caenorhabditis elegans; RNA-Seq\nSRR11217924,GSM4369050: rnaH27nsun2; Caenorhabditis elegans; RNA-Seq\nSRR11217923,GSM4369049: rnaH27nsun1; Caenorhabditis elegans; RNA-Seq\nSRR11217922,GSM4369048: rnaH27WT3; Caenorhabditis elegans; RNA-Seq\nSRR11217921,GSM4369047: rnaH27WT2; Caenorhabditis elegans; RNA-Seq\nSRR11217920,GSM4369046: rnaH27WT1; Caenorhabditis elegans; RNA-Seq\nSRR11217919,GSM4369045: rnaL20nsun3; Caenorhabditis elegans; RNA-Seq\nSRR11217918,GSM4369044: rnaL20nsun2; Caenorhabditis elegans; RNA-Seq\nSRR11217917,GSM4369043: rnaL20nsun1; Caenorhabditis elegans; RNA-Seq\nSRR11217916,GSM4369042: rnaL20WT3; Caenorhabditis elegans; RNA-Seq\nSRR11217915,GSM4369041: rnaL20WT2; Caenorhabditis elegans; RNA-Seq\nSRR11217914,GSM4369040: rnaL20WT1; Caenorhabditis elegans; RNA-Seq\nSRR11186550,GSM4340680: pmk-1(km25)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186549,GSM4340679: pmk-1(km25) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186548,GSM4340678: pmk-1(km25)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR11186547,GSM4340677: pmk-1(km25) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR11186546,GSM4340676: ced-3(n717)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186545,GSM4340675: ced-3(n717) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186544,GSM4340674: ced-3(n717)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR11186543,GSM4340673: ced-3(n717) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR11186542,GSM4340672: WT RPF Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186541,GSM4340671: WT total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq\nSRR11186540,GSM4340670: WT RPF Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR11186539,GSM4340669: WT total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq\nSRR10398500,GSM4148088: Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3; Caenorhabditis elegans; RNA-Seq\nSRR10398499,GSM4148087: Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2; Caenorhabditis elegans; RNA-Seq\nSRR10398498,GSM4148086: Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1; Caenorhabditis elegans; RNA-Seq\nSRR10398497,GSM4148085: Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3; Caenorhabditis elegans; RNA-Seq\nSRR10398496,GSM4148084: Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2; Caenorhabditis elegans; RNA-Seq\nSRR10398495,GSM4148083: Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1; Caenorhabditis elegans; RNA-Seq\nSRR10398494,GSM4148082: Slee135_meg34: meg-3meg-4 Riboseq-3; Caenorhabditis elegans; OTHER\nSRR10398493,GSM4148081: Slee133_meg34: meg-3meg-4 Riboseq-2; Caenorhabditis elegans; OTHER\nSRR10398492,GSM4148080: Slee123_meg34: meg-3meg-4 Riboseq-1; Caenorhabditis elegans; OTHER\nSRR10398491,GSM4148079: Slee136_N2: wild type Riboseq-3; Caenorhabditis elegans; OTHER\nSRR10398490,GSM4148078: Slee132_N2: wild type Riboseq-2; Caenorhabditis elegans; OTHER\nSRR10398489,GSM4148077: Slee111_N2: wild type Riboseq-1; Caenorhabditis elegans; OTHER\nSRR7241911,GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq\nSRR5026637,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026603,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026592,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026589,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026359,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR5026356,Bayesian Prediction of RNA Translation from Ribosome Profiling\nSRR3219264,unc-54(cc3389) Ribo-seq\nSRR3219253,unc-54(+) Ribo-seq\nSRR3219248,unc-54(+) Ribo-seq\nSRR1804351,GSM1611598: frac_26-34nt; Caenorhabditis elegans; OTHER\nSRR1804349,GSM1611597: frac_28-35nt; Caenorhabditis elegans; OTHER\nSRR1804348,GSM1611596: frac_28-30nt; Caenorhabditis elegans; OTHER\nSRR1804346,GSM1611595: frac_25-30nt; Caenorhabditis elegans; OTHER\nSRR1804345,GSM1611594: 04_N2_893_GCkit; Caenorhabditis elegans; OTHER\nSRR1804343,GSM1611593: 03_N2_893_SGkit; Caenorhabditis elegans; OTHER\nSRR1804341,GSM1611592: 02_N2_893_GCop; Caenorhabditis elegans; OTHER\nSRR1804340,GSM1611591: 01_N2_893_SGop; Caenorhabditis elegans; OTHER\nSRR1635379,GSM1534607: RNASeq_c14_2; Caenorhabditis elegans; RNA-Seq\nSRR1635378,GSM1534606: RNASeq_c14_1; Caenorhabditis elegans; RNA-Seq\nSRR1635377,GSM1534605: RNASeq_N2_2; Caenorhabditis elegans; RNA-Seq\nSRR1635376,GSM1534604: RNASeq_N2_1; Caenorhabditis elegans; RNA-Seq\nSRR914339,GSM1169554: Celeg-3-FED-RPF; Caenorhabditis elegans; OTHER\nSRR914338,GSM1169553: Celeg-2-FED-RPF; Caenorhabditis elegans; OTHER\nSRR914337,GSM1169552: Celeg-1-FED-RPF; Caenorhabditis elegans; OTHER\nSRR914336,GSM1169551: Celeg-3-ST-RPF; Caenorhabditis elegans; OTHER\nSRR914335,GSM1169550: Celeg-2-ST-RPF; Caenorhabditis elegans; OTHER\nSRR914334,GSM1169549: Celeg-1-ST-RPF; Caenorhabditis elegans; OTHER\nSRR914333,GSM1169548: Celeg-3-FED-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR914332,GSM1169547: Celeg-2-FED-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR914331,GSM1169546: Celeg-1-FED-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR914330,GSM1169545: Celeg-3-ST-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR914329,GSM1169544: Celeg-2-ST-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR914328,GSM1169543: Celeg-1-ST-mRNA; Caenorhabditis elegans; RNA-Seq\nSRR522897,L1 ribosome footprints replicate 4\nSRR522895,L2 ribosome footprints replicate 2 (seq-replicate)\nSRR522883,L4 ribosome footprints replicate 1\nSRR522896,L1 ribosome footprints replicate 3\nSRR522872,L1 ribosome footprints replicate 2\nSRR522871,L1 ribosome footprints replicate 1\nSRR522892,L2 ribosome footprints replicate 3\nSRR522890,L2 ribosome footprints replicate 2\nSRR522881,L2 ribosome footprints replicate 1\nSRR522153,L4 total RNA-seq\nSRR522152,L1 total RNA-seq\nSRR522151,L4 mRNA-seq replicate 2\nSRR522882,L4 mRNA-seq replicate 1\nSRR522888,L1 mRNA-seq replicate 4\nSRR522011,L1 replicate 3 mRNA-seq\nSRR522010,L1 replicate 2 mRNA-seq\nSRR522009,L1 mRNA-seq replicate 1\nSRR1804352,GSM1611598: frac_26-34nt; Caenorhabditis elegans; OTHER\nSRR1804350,GSM1611597: frac_28-35nt; Caenorhabditis elegans; OTHER\nSRR1804347,GSM1611595: frac_25-30nt; Caenorhabditis elegans; OTHER\nSRR1804344,GSM1611593: 03_N2_893_SGkit; Caenorhabditis elegans; OTHER\nSRR1804342,GSM1611592: 02_N2_893_GCop; Caenorhabditis elegans; OTHER\n"
  },
  {
    "path": "tests/data/test_search/sra_test_verbosity_2.csv",
    "content": "study_accession,experiment_accession,experiment_title,sample_taxon_id,sample_scientific_name,experiment_library_strategy,experiment_library_source,experiment_library_selection,sample_accession,sample_alias,experiment_instrument_model,pool_member_spots,run_1_size,run_1_accession,run_1_total_spots,run_1_total_bases\nSRP251352,SRX7830165,GSM4369051: rnaH27nsun3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240844,GSM4369051,Illumina HiSeq 2000,29156586,653560062,SRR11217925,29156586,1472955019\nSRP251352,SRX7830164,GSM4369050: rnaH27nsun2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240843,GSM4369050,Illumina HiSeq 2000,22565640,506358031,SRR11217924,22565640,1139918538\nSRP251352,SRX7830163,GSM4369049: rnaH27nsun1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240842,GSM4369049,Illumina HiSeq 2000,23045718,517675060,SRR11217923,23045718,1164355435\nSRP251352,SRX7830162,GSM4369048: rnaH27WT3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240841,GSM4369048,Illumina HiSeq 2000,20220436,454916247,SRR11217922,20220436,1021477707\nSRP251352,SRX7830161,GSM4369047: rnaH27WT2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240840,GSM4369047,Illumina HiSeq 2000,23193519,519655753,SRR11217921,23193519,1171799561\nSRP251352,SRX7830160,GSM4369046: rnaH27WT1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240839,GSM4369046,Illumina HiSeq 2000,29264100,659671877,SRR11217920,29264100,1478364947\nSRP251352,SRX7830159,GSM4369045: rnaL20nsun3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240838,GSM4369045,Illumina HiSeq 2000,29891239,673813329,SRR11217919,29891239,1510005136\nSRP251352,SRX7830158,GSM4369044: rnaL20nsun2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240837,GSM4369044,Illumina HiSeq 2000,32298489,723109558,SRR11217918,32298489,1631781747\nSRP251352,SRX7830157,GSM4369043: rnaL20nsun1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240836,GSM4369043,Illumina HiSeq 2000,29902595,671811120,SRR11217917,29902595,1510510194\nSRP251352,SRX7830156,GSM4369042: rnaL20WT3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240835,GSM4369042,Illumina HiSeq 2000,31692524,710100849,SRR11217916,31692524,1600940503\nSRP251352,SRX7830155,GSM4369041: rnaL20WT2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240834,GSM4369041,Illumina HiSeq 2000,30511012,682577921,SRR11217915,30511012,1541330541\nSRP251352,SRX7830154,GSM4369040: rnaL20WT1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240833,GSM4369040,Illumina HiSeq 2000,29920739,670669468,SRR11217914,29920739,1511594659\nSRP250832,SRX7806834,GSM4340680: pmk-1(km25)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219869,GSM4340680,NextSeq 500,34364285,863253383,SRR11186550,34364285,2542957090\nSRP250832,SRX7806833,GSM4340679: pmk-1(km25) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219868,GSM4340679,NextSeq 500,33631873,857793145,SRR11186549,33631873,2488758602\nSRP250832,SRX7806832,GSM4340678: pmk-1(km25)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219867,GSM4340678,NextSeq 500,30114094,778775375,SRR11186548,30114094,2228442956\nSRP250832,SRX7806831,GSM4340677: pmk-1(km25) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219866,GSM4340677,NextSeq 500,29403277,748531060,SRR11186547,29403277,2175842498\nSRP250832,SRX7806830,GSM4340676: ced-3(n717)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219865,GSM4340676,NextSeq 500,33357995,837113969,SRR11186546,33357995,2468491630\nSRP250832,SRX7806829,GSM4340675: ced-3(n717) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219864,GSM4340675,NextSeq 500,31063779,804926730,SRR11186545,31063779,2298719646\nSRP250832,SRX7806828,GSM4340674: ced-3(n717)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219863,GSM4340674,NextSeq 500,33350365,834857358,SRR11186544,33350365,2467927010\nSRP250832,SRX7806827,GSM4340673: ced-3(n717) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219862,GSM4340673,NextSeq 500,30481900,774994143,SRR11186543,30481900,2255660600\nSRP250832,SRX7806826,GSM4340672: WT RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219861,GSM4340672,NextSeq 500,29791126,744716047,SRR11186542,29791126,2204543324\nSRP250832,SRX7806825,GSM4340671: WT total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219860,GSM4340671,NextSeq 500,30801390,784439721,SRR11186541,30801390,2279302860\nSRP250832,SRX7806824,GSM4340670: WT RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219859,GSM4340670,NextSeq 500,31188949,786278140,SRR11186540,31188949,2307982226\nSRP250832,SRX7806823,GSM4340669: WT total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219858,GSM4340669,NextSeq 500,33246237,847324162,SRR11186539,33246237,2460221538\nSRP228538,SRX7098753,GSM4148088: Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611015,GSM4148088,Illumina HiSeq 2500,50180090,1461952152,SRR10398500,50180090,2509004500\nSRP228538,SRX7098752,GSM4148087: Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611014,GSM4148087,Illumina HiSeq 2500,59848989,1748019918,SRR10398499,59848989,2992449450\nSRP228538,SRX7098751,GSM4148086: Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611013,GSM4148086,Illumina HiSeq 2500,17823378,553495038,SRR10398498,17823378,891168900\nSRP228538,SRX7098750,GSM4148085: Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611012,GSM4148085,Illumina HiSeq 2500,64787771,1883244063,SRR10398497,64787771,3239388550\nSRP228538,SRX7098749,GSM4148084: Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611011,GSM4148084,Illumina HiSeq 2500,54109682,1574815163,SRR10398496,54109682,2705484100\nSRP228538,SRX7098748,GSM4148083: Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611010,GSM4148083,Illumina HiSeq 2500,53153078,1518355802,SRR10398495,53153078,2657653900\nSRP228538,SRX7098747,GSM4148082: Slee135_meg34: meg-3meg-4 Riboseq-3; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611009,GSM4148082,Illumina HiSeq 2500,117347118,3430391353,SRR10398494,117347118,5867355900\nSRP228538,SRX7098746,GSM4148081: Slee133_meg34: meg-3meg-4 Riboseq-2; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611008,GSM4148081,Illumina HiSeq 2500,107081543,3125393193,SRR10398493,107081543,5354077150\nSRP228538,SRX7098745,GSM4148080: Slee123_meg34: meg-3meg-4 Riboseq-1; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611007,GSM4148080,Illumina HiSeq 2500,35703383,867677732,SRR10398492,35703383,1785169150\nSRP228538,SRX7098744,GSM4148079: Slee136_N2: wild type Riboseq-3; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611006,GSM4148079,Illumina HiSeq 2500,121439833,3342082520,SRR10398491,121439833,6071991650\nSRP228538,SRX7098743,GSM4148078: Slee132_N2: wild type Riboseq-2; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611005,GSM4148078,Illumina HiSeq 2500,134995957,3934664046,SRR10398490,134995957,6749797850\nSRP228538,SRX7098742,GSM4148077: Slee111_N2: wild type Riboseq-1; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611004,GSM4148077,Illumina HiSeq 2500,76408239,1744253035,SRR10398489,76408239,3820411950\nSRP149446,SRX4147684,GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS3361274,GSM3168388,Illumina HiSeq 2500,76408239,1744253035,SRR7241911,76408239,3820411950\nSRP093364,SRX2352818,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,138903638,3355135395,SRR5026637,138903638,6945181900\nSRP093364,SRX2352801,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,139378431,3450860219,SRR5026603,139378431,6968921550\nSRP093364,SRX2352796,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,109643569,2602261551,SRR5026592,109643569,5482178450\nSRP093364,SRX2352779,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,125934593,3035330434,SRR5026589,125934593,6296729650\nSRP093364,SRX2352572,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,66094062,1613138917,SRR5026359,66094062,3304703100\nSRP093364,SRX2349147,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,335001052,8622020036,SRR5026356,335001052,16750052600\nSRP064516,SRX1626372,unc-54(cc3389) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335846,SJA131,Illumina MiSeq,3200939,79101256,SRR3219264,3200939,176051645\nSRP064516,SRX1626361,unc-54(+) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335837,SJA130,Illumina MiSeq,2845260,69990868,SRR3219253,2845260,156489300\nSRP064516,SRX1626357,unc-54(+) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335834,SJA129,Illumina MiSeq,3407482,84664325,SRR3219248,3407482,187411510\nSRP055039,SRX878014,GSM1611598: frac_26-34nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845968,GSM1611598,Illumina HiSeq 2000,50364078,1532513718,SRR1804351,50000000,2500000000\nSRP055039,SRX878013,GSM1611597: frac_28-35nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845969,GSM1611597,Illumina HiSeq 2000,66596977,1238978094,SRR1804349,50000000,2500000000\nSRP055039,SRX878012,GSM1611596: frac_28-30nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845970,GSM1611596,Illumina HiSeq 2000,46376697,1564322597,SRR1804348,46376697,2318834850\nSRP055039,SRX878011,GSM1611595: frac_25-30nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845971,GSM1611595,Illumina HiSeq 2000,58434235,1765202980,SRR1804346,50000000,2500000000\nSRP055039,SRX878010,GSM1611594: 04_N2_893_GCkit; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845972,GSM1611594,Illumina HiSeq 2000,48751368,1774440563,SRR1804345,48751368,2486319768\nSRP055039,SRX878009,GSM1611593: 03_N2_893_SGkit; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845973,GSM1611593,Illumina HiSeq 2000,67420201,1803539052,SRR1804343,50000000,2550000000\nSRP055039,SRX878008,GSM1611592: 02_N2_893_GCop; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845974,GSM1611592,Illumina HiSeq 2000,52891603,1798510443,SRR1804341,50000000,2550000000\nSRP055039,SRX878007,GSM1611591: 01_N2_893_SGop; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845975,GSM1611591,Illumina HiSeq 2000,49787580,1806454729,SRR1804340,49787580,2539166580\nSRP049413,SRX747690,GSM1534607: RNASeq_c14_2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734047,GSM1534607,Illumina HiSeq 2500,49019407,1169023236,SRR1635379,49019407,2450970350\nSRP049413,SRX747689,GSM1534606: RNASeq_c14_1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734046,GSM1534606,Illumina HiSeq 2500,63457303,1540925484,SRR1635378,63457303,3172865150\nSRP049413,SRX747688,GSM1534605: RNASeq_N2_2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734045,GSM1534605,Illumina HiSeq 2500,54290105,1318568086,SRR1635377,54290105,2714505250\nSRP049413,SRX747687,GSM1534604: RNASeq_N2_1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734044,GSM1534604,Illumina HiSeq 2500,64579253,1537362492,SRR1635376,64579253,3228962650\nSRP026198,SRX311785,GSM1169554: Celeg-3-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449537,GSM1169554,Illumina HiSeq 2000,20213950,446723077,SRR914339,20213950,727702200\nSRP026198,SRX311784,GSM1169553: Celeg-2-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449536,GSM1169553,Illumina HiSeq 2000,59233837,2094108084,SRR914338,59233837,2961691850\nSRP026198,SRX311783,GSM1169552: Celeg-1-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449535,GSM1169552,Illumina HiSeq 2000,30099263,1080856284,SRR914337,30099263,1504963150\nSRP026198,SRX311782,GSM1169551: Celeg-3-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449534,GSM1169551,Illumina HiSeq 2000,50278819,1757277248,SRR914336,50278819,2513940950\nSRP026198,SRX311781,GSM1169550: Celeg-2-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449533,GSM1169550,Illumina HiSeq 2000,20851539,453779681,SRR914335,20851539,750655404\nSRP026198,SRX311780,GSM1169549: Celeg-1-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449532,GSM1169549,Illumina HiSeq 2000,46096938,1610654289,SRR914334,46096938,2304846900\nSRP026198,SRX311779,GSM1169548: Celeg-3-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449531,GSM1169548,Illumina HiSeq 2000,27043901,943922301,SRR914333,27043901,1352195050\nSRP026198,SRX311778,GSM1169547: Celeg-2-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449530,GSM1169547,Illumina HiSeq 2000,15243931,541870283,SRR914332,15243931,762196550\nSRP026198,SRX311777,GSM1169546: Celeg-1-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449529,GSM1169546,Illumina HiSeq 2000,14429547,515974302,SRR914331,14429547,721477350\nSRP026198,SRX311776,GSM1169545: Celeg-3-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449528,GSM1169545,Illumina HiSeq 2000,23438522,822960576,SRR914330,23438522,1171926100\nSRP026198,SRX311775,GSM1169544: Celeg-2-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449527,GSM1169544,Illumina HiSeq 2000,31547222,1401361925,SRR914329,31547222,2366041650\nSRP026198,SRX311774,GSM1169543: Celeg-1-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449591,GSM1169543,Illumina HiSeq 2000,19452670,696539703,SRR914328,19452670,972633500\nSRP014427,SRX160517,L1 ribosome footprints replicate 4,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,172256552,7089950470,SRR522897,172256552,9990880016\nSRP014427,SRX160513,L2 ribosome footprints replicate 2 (seq-replicate),6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,160368455,6099790048,SRR522895,160368455,9301370390\nSRP014427,SRX160518,L4 ribosome footprints replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,174693758,7204894135,SRR522883,174693758,10132237964\nSRP014427,SRX160516,L1 ribosome footprints replicate 3,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,20213950,447522447,SRR522896,20213950,727702200\nSRP014427,SRX160515,L1 ribosome footprints replicate 2,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,59233837,2096895718,SRR522872,59233837,2961691850\nSRP014427,SRX160514,L1 ribosome footprints replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,30099263,1082257308,SRR522871,30099263,1504963150\nSRP014427,SRX160512,L2 ribosome footprints replicate 3,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,32939763,674223820,SRR522892,32939763,1185831468\nSRP014427,SRX160511,L2 ribosome footprints replicate 2,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,13600895,255011824,SRR522890,13600895,489632220\nSRP014427,SRX160510,L2 ribosome footprints replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,15787042,298610401,SRR522881,15787042,568333512\nSRP014427,SRX160293,L4 total RNA-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,58539675,1150293060,SRR522153,58539675,2107428300\nSRP014427,SRX160292,L1 total RNA-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,33245137,717344505,SRR522152,33245137,1196824932\nSRP014427,SRX160291,L4 mRNA-seq replicate 2,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina Genome Analyzer IIx,27313086,546661322,SRR522151,27313086,983271096\nSRP014427,SRX160290,L4 mRNA-seq replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,184752725,7621028154,SRR522882,184752725,10715658050\nSRP014427,SRX160157,L1 mRNA-seq replicate 4,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,97881671,4241570041,SRR522888,97881671,5677136918\nSRP014427,SRX160149,L1 replicate 3 mRNA-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,27043901,945136520,SRR522011,27043901,1352195050\nSRP014427,SRX160148,L1 replicate 2 mRNA-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,15243931,542413430,SRR522010,15243931,762196550\nSRP014427,SRX160147,L1 mRNA-seq replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,14429547,516477040,SRR522009,14429547,721477350\n"
  },
  {
    "path": "tests/data/test_search/sra_test_verbosity_3.csv",
    "content": 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rnaH27nsun3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240844,GSM4369051,Illumina HiSeq 2000,29156586,653560062,SRR11217925,29156586,1472955019,GSM4369051,GEO Accession,GSM4369051,<NA>,<NA>,<NA>,GSM4369051,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369051,LABEL: GSM4369051,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240844,<NA>,SINGLE,SAMN14262094,SRS6240844,1472955019,<NA>,Caenorhabditis elegans,GSM4369051,rnaH27nsun3,6239,GSM4369051_r1,382463198,383363002,348833145,556030,357739644,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29156586\"\" /><Elements count=\"\"1472955019\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11217925/ICN-12_S12.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11217925/ICN-12_S12.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:17,<NA>,71f7deb03542a4364d272b8bb3a388c6,fastq,718691668,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010955/SRR11217925,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR11217925/SRR11217925.1,gcp identity,gs.US,GCP,gs://sra-pub-run-7/SRR11217925/SRR11217925.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:43,SRR11217925,5f6cbd5ce0a57afa0c589b1289761370,run,653562181,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010955/SRR11217925,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1472955019,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262094,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27nsun3,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830164,GSM4369050: rnaH27nsun2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240843,GSM4369050,Illumina HiSeq 2000,22565640,506358031,SRR11217924,22565640,1139918538,GSM4369050,GEO Accession,GSM4369050,<NA>,<NA>,<NA>,GSM4369050,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369050,LABEL: GSM4369050,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240843,<NA>,SINGLE,SAMN14262095,SRS6240843,1139918538,<NA>,Caenorhabditis elegans,GSM4369050,rnaH27nsun2,6239,GSM4369050_r1,298818895,294922698,267736921,371135,278068889,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"22565640\"\" /><Elements count=\"\"1139918538\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-12/SRR11217924/ICN-11_S11.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-12/SRR11217924/ICN-11_S11.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:48:31,<NA>,6d752552a724ff725c949bb10acf3d3f,fastq,561312446,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/010955/SRR11217924,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11217924/SRR11217924.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11217924/SRR11217924.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:48:51,SRR11217924,6792d5c7e80a5c7ed19d6fcbbbc8b850,run,506360149,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra66/SRR/010955/SRR11217924,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1139918538,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262095,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27nsun2,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830163,GSM4369049: rnaH27nsun1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240842,GSM4369049,Illumina HiSeq 2000,23045718,517675060,SRR11217923,23045718,1164355435,GSM4369049,GEO Accession,GSM4369049,<NA>,<NA>,<NA>,GSM4369049,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369049,LABEL: GSM4369049,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240842,<NA>,SINGLE,SAMN14262096,SRS6240842,1164355435,<NA>,Caenorhabditis elegans,GSM4369049,rnaH27nsun1,6239,GSM4369049_r1,303774981,302133692,273117993,337197,284991572,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"23045718\"\" /><Elements count=\"\"1164355435\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11217923/ICN-10_S10.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11217923/ICN-10_S10.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:49:41,<NA>,09b25e1939de2b4a379afd4633369775,fastq,579257723,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010955/SRR11217923,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11217923/SRR11217923.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11217923/SRR11217923.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:05,SRR11217923,9ba3ae130439af2590c7307fe37ef21d,run,517677177,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra22/SRR/010955/SRR11217923,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1164355435,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262096,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27nsun1,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830162,GSM4369048: rnaH27WT3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240841,GSM4369048,Illumina HiSeq 2000,20220436,454916247,SRR11217922,20220436,1021477707,GSM4369048,GEO Accession,GSM4369048,<NA>,<NA>,<NA>,GSM4369048,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369048,LABEL: GSM4369048,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240841,<NA>,SINGLE,SAMN14262097,SRS6240841,1021477707,<NA>,Caenorhabditis elegans,GSM4369048,rnaH27WT3,6239,GSM4369048_r1,267649932,265386720,240228857,359263,247852935,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"20220436\"\" /><Elements count=\"\"1021477707\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR11217922/ICN-09_S9.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR11217922/ICN-09_S9.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:47:59,<NA>,314952e01bb1473982cf0c332ab91817,fastq,506379353,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/010955/SRR11217922,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-6/SRR11217922/SRR11217922.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR11217922/SRR11217922.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:48:17,SRR11217922,f60bf66704ca1278d5ce96a415971bed,run,454918368,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra28/SRR/010955/SRR11217922,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1021477707,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262097,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27WT3,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830161,GSM4369047: rnaH27WT2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240840,GSM4369047,Illumina HiSeq 2000,23193519,519655753,SRR11217921,23193519,1171799561,GSM4369047,GEO Accession,GSM4369047,<NA>,<NA>,<NA>,GSM4369047,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369047,LABEL: GSM4369047,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240840,<NA>,SINGLE,SAMN14262098,SRS6240840,1171799561,<NA>,Caenorhabditis elegans,GSM4369047,rnaH27WT2,6239,GSM4369047_r1,306725822,306004751,275721333,463743,282883912,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"23193519\"\" /><Elements count=\"\"1171799561\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11217921/ICN-08_S8.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11217921/ICN-08_S8.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:47:50,<NA>,2dea86900e8e176457d67f60324e0b28,fastq,574811709,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010955/SRR11217921,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11217921/SRR11217921.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11217921/SRR11217921.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:48:02,SRR11217921,feca6d4e41da203410303091728ad42a,run,519657875,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010955/SRR11217921,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1171799561,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262098,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27WT2,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830160,GSM4369046: rnaH27WT1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240839,GSM4369046,Illumina HiSeq 2000,29264100,659671877,SRR11217920,29264100,1478364947,GSM4369046,GEO Accession,GSM4369046,<NA>,<NA>,<NA>,GSM4369046,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369046,LABEL: GSM4369046,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240839,<NA>,SINGLE,SAMN14262099,SRS6240839,1478364947,<NA>,Caenorhabditis elegans,GSM4369046,rnaH27WT1,6239,GSM4369046_r1,382118207,382503596,349309307,861255,363572582,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29264100\"\" /><Elements count=\"\"1478364947\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR11217920/ICN-07_S7.fastq.gz.1,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR11217920/ICN-07_S7.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:49:25,<NA>,2b422efb98539cc38d7fd07e4f5ad280,fastq,740347495,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/010955/SRR11217920,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11217920/SRR11217920.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11217920/SRR11217920.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:49:44,SRR11217920,4cc08d2cd582626f82c7a1dec67d1b46,run,659673990,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra19/SRR/010955/SRR11217920,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1478364947,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,27,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262099,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaH27WT1,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830159,GSM4369045: rnaL20nsun3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240838,GSM4369045,Illumina HiSeq 2000,29891239,673813329,SRR11217919,29891239,1510005136,GSM4369045,GEO Accession,GSM4369045,<NA>,<NA>,<NA>,GSM4369045,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369045,LABEL: GSM4369045,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240838,<NA>,SINGLE,SAMN14262100,SRS6240838,1510005136,<NA>,Caenorhabditis elegans,GSM4369045,rnaL20nsun3,6239,GSM4369045_r1,390734249,388663023,357256079,696106,372655679,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29891239\"\" /><Elements count=\"\"1510005136\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-8/SRR11217919/ICN-06_S6.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-8/SRR11217919/ICN-06_S6.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:55:31,<NA>,4392ef76def5efa96469ef7c20ee0390,fastq,752039868,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/010954/SRR11217919,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-7/SRR11217919/SRR11217919.1,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR11217919/SRR11217919.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:56:13,SRR11217919,d08dee0029b7a17fa74a499dcbb9c6b3,run,673815447,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra15/SRR/010954/SRR11217919,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1510005136,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262100,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20nsun3,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830158,GSM4369044: rnaL20nsun2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240837,GSM4369044,Illumina HiSeq 2000,32298489,723109558,SRR11217918,32298489,1631781747,GSM4369044,GEO Accession,GSM4369044,<NA>,<NA>,<NA>,GSM4369044,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369044,LABEL: GSM4369044,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240837,<NA>,SINGLE,SAMN14262101,SRS6240837,1631781747,<NA>,Caenorhabditis elegans,GSM4369044,rnaL20nsun2,6239,GSM4369044_r1,426634172,419579176,384996637,588737,399983025,<NA>,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"32298489\"\" /><Elements count=\"\"1631781747\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRZ/011217/SRR11217918/ICN-05_S5.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:47,ICN-05_S5.fastq.gz,8103aefb1b95eaf0acb7578300651ec0,fastq,801345858,0,Original,https://sra-download.ncbi.nlm.nih.gov/traces/sra9/SRZ/011217/SRR11217918/ICN-05_S5.fastq.gz,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010954/SRR11217918,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11217918/SRR11217918.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11217918/SRR11217918.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:51:12,SRR11217918,756e31c0766fe84e79131bacf459f320,run,723111676,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra55/SRR/010954/SRR11217918,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1631781747,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262101,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20nsun2,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830157,GSM4369043: rnaL20nsun1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240836,GSM4369043,Illumina HiSeq 2000,29902595,671811120,SRR11217917,29902595,1510510194,GSM4369043,GEO Accession,GSM4369043,<NA>,<NA>,<NA>,GSM4369043,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369043,LABEL: GSM4369043,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240836,<NA>,SINGLE,SAMN14262102,SRS6240836,1510510194,<NA>,Caenorhabditis elegans,GSM4369043,rnaL20nsun1,6239,GSM4369043_r1,389909920,389932739,356931273,771186,372965076,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29902595\"\" /><Elements count=\"\"1510510194\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR11217917/ICN-04_S4.fastq.gz.1,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR11217917/ICN-04_S4.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:51:18,<NA>,916fe1fa029221d55d678f7fb8fc3850,fastq,741235433,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/010954/SRR11217917,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11217917/SRR11217917.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11217917/SRR11217917.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:51:41,SRR11217917,8f17921020f5338021259ad66cfa3d90,run,671813239,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra20/SRR/010954/SRR11217917,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1510510194,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,noNSUN,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262102,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20nsun1,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830156,GSM4369042: rnaL20WT3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240835,GSM4369042,Illumina HiSeq 2000,31692524,710100849,SRR11217916,31692524,1600940503,GSM4369042,GEO Accession,GSM4369042,<NA>,<NA>,<NA>,GSM4369042,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369042,LABEL: GSM4369042,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240835,<NA>,SINGLE,SAMN14262103,SRS6240835,1600940503,<NA>,Caenorhabditis elegans,GSM4369042,rnaL20WT3,6239,GSM4369042_r1,412825059,412495776,381736364,839315,393043989,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"31692524\"\" /><Elements count=\"\"1600940503\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11217916/ICN-03_S3.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11217916/ICN-03_S3.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:52:30,<NA>,0bd13a1fc7c8b899433d2b0703d058ae,fastq,788245180,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/010954/SRR11217916,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR11217916/SRR11217916.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR11217916/SRR11217916.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:52:54,SRR11217916,e0d2490640aa5c4320a1ef928ed541fc,run,710102964,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra44/SRR/010954/SRR11217916,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1600940503,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262103,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20WT3,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830155,GSM4369041: rnaL20WT2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240834,GSM4369041,Illumina HiSeq 2000,30511012,682577921,SRR11217915,30511012,1541330541,GSM4369041,GEO Accession,GSM4369041,<NA>,<NA>,<NA>,GSM4369041,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369041,LABEL: GSM4369041,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240834,<NA>,SINGLE,SAMN14262104,SRS6240834,1541330541,<NA>,Caenorhabditis elegans,GSM4369041,rnaL20WT2,6239,GSM4369041_r1,398519968,397956128,366381635,605330,377867480,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"30511012\"\" /><Elements count=\"\"1541330541\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11217915/ICN-02_S2.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11217915/ICN-02_S2.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:32,<NA>,4937a59fcdbbba1a31f931f2771dcdb1,fastq,747661439,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010954/SRR11217915,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR11217915/SRR11217915.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR11217915/SRR11217915.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:50:56,SRR11217915,1fe769ceb3acf5f9b8ba1d88b43131ad,run,682580036,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010954/SRR11217915,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1541330541,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262104,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20WT2,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP251352,SRX7830154,GSM4369040: rnaL20WT1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6240833,GSM4369040,Illumina HiSeq 2000,29920739,670669468,SRR11217914,29920739,1511594659,GSM4369040,GEO Accession,GSM4369040,<NA>,<NA>,<NA>,GSM4369040,\"Input RNA was extracted from the supernatant of the same samples used for polysome profiling and ribosome footprinting. RNA was depleted of DNA with a TURBO DNA-free kit (Invitrogen), according to the manufacturer's instructions. Libraries were prepared with 750 ng of starting material using the NEBNext Ultra II Directional RNA Library Prep Kit for Illumina, following rRNA depletion using a NEBNext rRNA Depletion Kit (Human/Mouse/Rat)\",<NA>,XREF_LINK,DB: gds,ID: 304369040,LABEL: GSM4369040,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6240833,<NA>,SINGLE,SAMN14262081,SRS6240833,1511594659,<NA>,Caenorhabditis elegans,GSM4369040,rnaL20WT1,6239,GSM4369040_r1,391850472,388020000,353950329,619598,377154260,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29920739\"\" /><Elements count=\"\"1511594659\"\" /></Statistics></Table></Database>\",true,true,2020-06-30 17:40:41,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11217914/ICN-01_S1.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11217914/ICN-01_S1.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:51:09,<NA>,40bb19b1388c4bac9166816869735de6,fastq,747260046,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/010954/SRR11217914,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11217914/SRR11217914.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11217914/SRR11217914.1,<NA>,<NA>,<NA>,<NA>,public,2020-03-03 08:51:39,SRR11217914,839fc0eebacce559f9a303e79d3f293a,run,670671586,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra73/SRR/010954/SRR11217914,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1511594659,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole animal,datapipeline,Pipeline2,temperature,20,genotype,WT,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14262081,BioSample,XREF_LINK,DB: bioproject,ID: 609901,LABEL: PRJNA609901,<NA>,<NA>,<NA>,<NA>,6239,rnaL20WT1,GSE146256,<NA>,<NA>,GEO,GSE146256,PRJNA609901,BioProject,<NA>,<NA>,<NA>,\"In order to fulfil a wide range of cellular functions, RNA molecules contain, in addition to the four canonical bases, a large number of chemically modified structures. Among those, the methylation of carbon-5 of cytosines (m5C) is an abundant, widespread mark in different classes of RNAs. m5C is catalysed by DNMT2 and by seven members of the NSUN family of enzymes. While some m5C-methyltransferases have been studied individually and implicated in phenotypes observed in organisms ranging from yeast to humans, it remains unclear how the m5C methylome acts to sustain development in homeostasis and stress. Here, using Caenorhabditis elegans as a model organism, we developed the first organism devoid of detectable m5C in RNA, providing strong evidence that this modification and its derivatives are non-essential for the nematode's development and fertility under standard laboratory conditions. We further used this genetic tool to determine the localisation of m5C sites in different RNA classes, and showed that NSUN-4 acts as a multisite-specific tRNA/rRNA methyltransferase in the mitochondria. In addition, we show that m5C is required for adaptation to temperature changes, as animals devoid of this modification present temperature-sensitive fertility defects. At the molecular level, we show that loss of m5C leads to increased ribosome pausing at triplets encoding for leucine and proline, the most frequently methylated tRNA isoacceptors in C. elegans. This is correlated with reduced translation efficiency of transcripts enriched in these amino acids. Finally, we found translation of Leu-UUG codons to be the most strongly affected upon heat shock, suggesting a role of m5C wobble methylation in the adaptation to heat stress. Overall design: RNASeq and Ribosome profilling from 4 samples of C. elegans. WT and NSUN mutants from 20 and 27 degrees celcius.\",Translational adaptation to heat stress is mediated by 5-methylcytosine RNA modification in Caenorhabditis elegans,Other,SRA1050341,GEO: GSE146256,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806834,GSM4340680: pmk-1(km25)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219869,GSM4340680,NextSeq 500,34364285,863253383,SRR11186550,34364285,2542957090,GSM4340680,GEO Accession,GSM4340680,<NA>,<NA>,<NA>,SAMN14213080,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340680,LABEL: GSM4340680,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219869,<NA>,PAIRED,SAMN14213080,SRS6219869,2542957090,<NA>,Caenorhabditis elegans,GSM4340680,pmk-1(km25)RPF Replicate 2,6239,GSM4340680_r1,645965116,601387526,690345517,231768,605027163,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"34364285\"\" /><Elements count=\"\"2542957090\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186550/PIR9_S10_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186550/PIR9_S10_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:49:19,<NA>,4060923ab1baa6e2a5e05714ece16189,fastq,741411436,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186550/PIR9_S10_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186550/PIR9_S10_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:49:34,<NA>,deaaf6db25d2938c49fbaf88cbdb6da9,fastq,762175645,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010924/SRR11186550,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11186550/SRR11186550.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11186550/SRR11186550.1,public,2020-02-26 13:49:58,SRR11186550,6a20b1926c9658ed66bc371947127a8f,run,863254910,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010924/SRR11186550,1,2542957090,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,pmk-1(km25),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213080,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,pmk-1(km25)RPF Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806833,GSM4340679: pmk-1(km25) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219868,GSM4340679,NextSeq 500,33631873,857793145,SRR11186549,33631873,2488758602,GSM4340679,GEO Accession,GSM4340679,<NA>,<NA>,<NA>,SAMN14213082,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340679,LABEL: GSM4340679,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219868,<NA>,PAIRED,SAMN14213082,SRS6219868,2488758602,<NA>,Caenorhabditis elegans,GSM4340679,pmk-1(km25) total mRNA Replicate 2,6239,GSM4340679_r1,658289904,592704304,586598856,227081,650938457,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"33631873\"\" /><Elements count=\"\"2488758602\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186549/PIT2_S9_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186549/PIT2_S9_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:33,<NA>,0e08699650705024c1d1e5f4cfb673f8,fastq,827866361,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186549/PIT2_S9_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186549/PIT2_S9_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:48,<NA>,5f833a2714523ce9e9dd38dfa0b03a45,fastq,835538518,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/010924/SRR11186549,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-7/SRR11186549/SRR11186549.1,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR11186549/SRR11186549.1,public,2020-02-26 13:49:17,SRR11186549,6573bb0ce40815f86d522da2d26d997e,run,857794670,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra6/SRR/010924/SRR11186549,1,2488758602,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,pmk-1(km25),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213082,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,pmk-1(km25) total mRNA Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806832,GSM4340678: pmk-1(km25)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219867,GSM4340678,NextSeq 500,30114094,778775375,SRR11186548,30114094,2228442956,GSM4340678,GEO Accession,GSM4340678,<NA>,<NA>,<NA>,SAMN14212991,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340678,LABEL: GSM4340678,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219867,<NA>,PAIRED,SAMN14212991,SRS6219867,2228442956,<NA>,Caenorhabditis elegans,GSM4340678,pmk-1(km25)RPF Replicate 1,6239,GSM4340678_r1,561020148,531841432,615224639,201393,520155344,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"30114094\"\" /><Elements count=\"\"2228442956\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11186548/PIR11_S4_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11186548/PIR11_S4_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 14:22:06,<NA>,e6cfb51999cffb964765bb7354581724,fastq,652443598,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11186548/PIR11_S4_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11186548/PIR11_S4_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 14:21:47,<NA>,abc2c605b9266d9298d10e3e6b4cafdb,fastq,691394934,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010924/SRR11186548,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11186548/SRR11186548.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11186548/SRR11186548.1,public,2020-02-26 14:22:40,SRR11186548,5fd0463a761492db2a52589c352cd827,run,778776905,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra8/SRR/010924/SRR11186548,1,2228442956,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,pmk-1(km25),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212991,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,pmk-1(km25)RPF Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806831,GSM4340677: pmk-1(km25) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219866,GSM4340677,NextSeq 500,29403277,748531060,SRR11186547,29403277,2175842498,GSM4340677,GEO Accession,GSM4340677,<NA>,<NA>,<NA>,SAMN14213083,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340677,LABEL: GSM4340677,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219866,<NA>,PAIRED,SAMN14213083,SRS6219866,2175842498,<NA>,Caenorhabditis elegans,GSM4340677,pmk-1(km25) total mRNA Replicate 1,6239,GSM4340677_r1,582874401,506189454,517929641,194150,568654852,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29403277\"\" /><Elements count=\"\"2175842498\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11186547/PIT7_S3_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11186547/PIT7_S3_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:50:25,<NA>,495c12e1abf50f9ccfafd887785db9a9,fastq,733056875,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR11186547/PIT7_S3_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR11186547/PIT7_S3_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:50:11,<NA>,3b0e1bc0b2db303485990b8945811ecb,fastq,740649686,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/010924/SRR11186547,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11186547/SRR11186547.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11186547/SRR11186547.1,public,2020-02-26 13:50:54,SRR11186547,130e35442a37d77c223aec911b45eba5,run,748532585,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra67/SRR/010924/SRR11186547,1,2175842498,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,pmk-1(km25),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213083,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,pmk-1(km25) total mRNA Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806830,GSM4340676: ced-3(n717)RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219865,GSM4340676,NextSeq 500,33357995,837113969,SRR11186546,33357995,2468491630,GSM4340676,GEO Accession,GSM4340676,<NA>,<NA>,<NA>,SAMN14213084,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340676,LABEL: GSM4340676,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219865,<NA>,PAIRED,SAMN14213084,SRS6219865,2468491630,<NA>,Caenorhabditis elegans,GSM4340676,ced-3(n717)RPF Replicate 2,6239,GSM4340676_r1,634808503,574548549,671146860,226579,587761139,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"33357995\"\" /><Elements count=\"\"2468491630\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186546/C3R10_S12_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186546/C3R10_S12_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:49:28,<NA>,cdf4234f909eb6da3c101438af875af0,fastq,703464289,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186546/C3R10_S12_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186546/C3R10_S12_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:49:41,<NA>,e66e6ef93c786adfaebe950f1f627084,fastq,723391112,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/010924/SRR11186546,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11186546/SRR11186546.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11186546/SRR11186546.1,public,2020-02-26 13:50:07,SRR11186546,f6ac4056f9695fef6935d8fd8022c022,run,837115501,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra75/SRR/010924/SRR11186546,1,2468491630,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,ced-3(n717),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213084,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,ced-3(n717)RPF Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806829,GSM4340675: ced-3(n717) total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219864,GSM4340675,NextSeq 500,31063779,804926730,SRR11186545,31063779,2298719646,GSM4340675,GEO Accession,GSM4340675,<NA>,<NA>,<NA>,SAMN14213085,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340675,LABEL: GSM4340675,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219864,<NA>,PAIRED,SAMN14213085,SRS6219864,2298719646,<NA>,Caenorhabditis elegans,GSM4340675,ced-3(n717) total mRNA Replicate 2,6239,GSM4340675_r1,613070283,539625724,541625432,206119,604192088,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"31063779\"\" /><Elements count=\"\"2298719646\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR11186545/C3T3_S11_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR11186545/C3T3_S11_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:53:22,<NA>,0b5ebe4a15329642624dba1310fcbc15,fastq,778434039,0,Original,<NA>,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR11186545/C3T3_S11_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR11186545/C3T3_S11_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:54:17,<NA>,fba52f4c23a85f2daabc9db2c4640c25,fastq,785327397,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/010924/SRR11186545,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11186545/SRR11186545.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11186545/SRR11186545.1,public,2020-02-26 13:55:26,SRR11186545,19c4d9f8bf9eec57ee2ebeb938793662,run,804928258,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra77/SRR/010924/SRR11186545,1,2298719646,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,ced-3(n717),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213085,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,ced-3(n717) total mRNA Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806828,GSM4340674: ced-3(n717)RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219863,GSM4340674,NextSeq 500,33350365,834857358,SRR11186544,33350365,2467927010,GSM4340674,GEO Accession,GSM4340674,<NA>,<NA>,<NA>,SAMN14213086,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340674,LABEL: GSM4340674,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219863,<NA>,PAIRED,SAMN14213086,SRS6219863,2467927010,<NA>,Caenorhabditis elegans,GSM4340674,ced-3(n717)RPF Replicate 1,6239,GSM4340674_r1,623583904,587738780,678977835,227025,577399466,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"33350365\"\" /><Elements count=\"\"2467927010\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186544/C3R12_S6_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186544/C3R12_S6_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:13,<NA>,115ee2f809a109b9744b550f84b19c08,fastq,685147616,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186544/C3R12_S6_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186544/C3R12_S6_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:26,<NA>,fd7d4228194453efa815bd7022d5df98,fastq,702813418,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010924/SRR11186544,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR11186544/SRR11186544.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR11186544/SRR11186544.1,public,2020-02-26 13:49:07,SRR11186544,59c7a29414f503c5e39964822ad78082,run,834858884,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra51/SRR/010924/SRR11186544,1,2467927010,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,ced-3(n717),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14213086,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,ced-3(n717)RPF Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806827,GSM4340673: ced-3(n717) total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219862,GSM4340673,NextSeq 500,30481900,774994143,SRR11186543,30481900,2255660600,GSM4340673,GEO Accession,GSM4340673,<NA>,<NA>,<NA>,SAMN14212992,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340673,LABEL: GSM4340673,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219862,<NA>,PAIRED,SAMN14212992,SRS6219862,2255660600,<NA>,Caenorhabditis elegans,GSM4340673,ced-3(n717) total mRNA Replicate 1,6239,GSM4340673_r1,603680558,524458579,534094109,207823,593219531,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"30481900\"\" /><Elements count=\"\"2255660600\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186543/C3T8_S5_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186543/C3T8_S5_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:28,<NA>,f948e19ae3a9985bcd35aad20afca0a9,fastq,769973461,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186543/C3T8_S5_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186543/C3T8_S5_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:48:42,<NA>,dfb5da371dbe7b13e21e6df88edc7d1e,fastq,778038161,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/010924/SRR11186543,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR11186543/SRR11186543.1,gcp identity,gs.US,GCP,gs://sra-pub-run-6/SRR11186543/SRR11186543.1,public,2020-02-26 13:49:07,SRR11186543,22a8dc52cf3dd3dc1f5f57159dea4021,run,774995669,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra34/SRR/010924/SRR11186543,1,2255660600,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,genotype,ced-3(n717),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212992,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,ced-3(n717) total mRNA Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806826,GSM4340672: WT RPF Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219861,GSM4340672,NextSeq 500,29791126,744716047,SRR11186542,29791126,2204543324,GSM4340672,GEO Accession,GSM4340672,<NA>,<NA>,<NA>,SAMN14212993,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340672,LABEL: GSM4340672,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219861,<NA>,PAIRED,SAMN14212993,SRS6219861,2204543324,<NA>,Caenorhabditis elegans,GSM4340672,WT RPF Replicate 2,6239,GSM4340672_r1,571060725,508680213,596572223,202856,528027307,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"29791126\"\" /><Elements count=\"\"2204543324\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186542/N2R5_S8_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186542/N2R5_S8_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:44:14,<NA>,64991fd231a1c3356a584f2b4e16eec2,fastq,643257441,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186542/N2R5_S8_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186542/N2R5_S8_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:44:19,<NA>,7215d0bccb51f84be4c09572ad63b316,fastq,656602269,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010924/SRR11186542,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-9/SRR11186542/SRR11186542.1,gcp identity,gs.US,GCP,gs://sra-pub-run-8/SRR11186542/SRR11186542.1,public,2020-02-26 13:44:35,SRR11186542,13ceb84dfef0f485b4b0856fdf9da83e,run,744717577,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010924/SRR11186542,1,2204543324,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,strain,N2,genotype,wild type,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212993,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,WT RPF Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806825,GSM4340671: WT total mRNA Replicate 2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219860,GSM4340671,NextSeq 500,30801390,784439721,SRR11186541,30801390,2279302860,GSM4340671,GEO Accession,GSM4340671,<NA>,<NA>,<NA>,SAMN14212994,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340671,LABEL: GSM4340671,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219860,<NA>,PAIRED,SAMN14212994,SRS6219860,2279302860,<NA>,Caenorhabditis elegans,GSM4340671,WT total mRNA Replicate 2,6239,GSM4340671_r1,605966930,537228611,538483468,210682,597413169,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"30801390\"\" /><Elements count=\"\"2279302860\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186541/N2T1_S7_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186541/N2T1_S7_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:50:32,<NA>,586eddd82810646ee6dc3beafa34b919,fastq,763205736,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR11186541/N2T1_S7_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR11186541/N2T1_S7_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:50:16,<NA>,d64156bc4bf61a71b450a0e94329de94,fastq,768157659,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/010924/SRR11186541,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR11186541/SRR11186541.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR11186541/SRR11186541.1,public,2020-02-26 13:51:25,SRR11186541,fd8e51fa7ad0f92afb78685cf70c73e2,run,784441248,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra58/SRR/010924/SRR11186541,1,2279302860,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,strain,N2,genotype,wild type,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212994,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,WT total mRNA Replicate 2,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806824,GSM4340670: WT RPF Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219859,GSM4340670,NextSeq 500,31188949,786278140,SRR11186540,31188949,2307982226,GSM4340670,GEO Accession,GSM4340670,<NA>,<NA>,<NA>,SAMN14212996,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340670,LABEL: GSM4340670,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219859,<NA>,PAIRED,SAMN14212996,SRS6219859,2307982226,<NA>,Caenorhabditis elegans,GSM4340670,WT RPF Replicate 1,6239,GSM4340670_r1,591272930,540451863,634630622,210871,541415940,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"31188949\"\" /><Elements count=\"\"2307982226\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR11186540/N2R6_S2_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR11186540/N2R6_S2_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:49:59,<NA>,60cb0c2efdbee3b860426ff5a0faec1a,fastq,650130909,0,Original,<NA>,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR11186540/N2R6_S2_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR11186540/N2R6_S2_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:51:44,<NA>,36502272075a324d21277406c9068c4b,fastq,669109609,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010924/SRR11186540,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-8/SRR11186540/SRR11186540.1,gcp identity,gs.US,GCP,gs://sra-pub-run-9/SRR11186540/SRR11186540.1,public,2020-02-26 13:52:14,SRR11186540,c3cf379acdfd07410ae7dd9ec2223315,run,786279668,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra25/SRR/010924/SRR11186540,1,2307982226,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,strain,N2,genotype,wild type,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212996,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,WT RPF Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP250832,SRX7806823,GSM4340669: WT total mRNA Replicate 1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS6219858,GSM4340669,NextSeq 500,33246237,847324162,SRR11186539,33246237,2460221538,GSM4340669,GEO Accession,GSM4340669,<NA>,<NA>,<NA>,SAMN14212997,\"The ribosomal profiling protocol and total mRNA isolation were modified based on a published protocol (Aeschimann et al., 2015) and the TruSeq® Ribo Profile Protocol (Illumina). TruSeq® Ribo Profile Protocol (Illumina). RNA-seq and Ribosome profilling\",<NA>,XREF_LINK,DB: gds,ID: 304340669,LABEL: GSM4340669,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS6219858,<NA>,PAIRED,SAMN14212997,SRS6219858,2460221538,<NA>,Caenorhabditis elegans,GSM4340669,WT total mRNA Replicate 1,6239,GSM4340669_r1,665570748,562628949,583277563,225081,648519197,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"33246237\"\" /><Elements count=\"\"2460221538\"\" /></Statistics></Table></Database>\",true,true,2020-05-05 11:25:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR11186539/N2T4_S1_R1_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR11186539/N2T4_S1_R1_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:47:24,<NA>,1216516c3cfc6e6eefa686ab2f4de78b,fastq,823881309,0,Original,<NA>,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR11186539/N2T4_S1_R2_001.fastq.gz.1,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR11186539/N2T4_S1_R2_001.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-26 13:47:39,<NA>,3aa78e16336b7c2c0c88df90dd3169bb,fastq,834413274,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010924/SRR11186539,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR11186539/SRR11186539.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR11186539/SRR11186539.1,public,2020-02-26 13:48:27,SRR11186539,4cedd6f32ca7e6dcbce9cca9ea5df668,run,847325690,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra53/SRR/010924/SRR11186539,1,2460221538,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole worm,Stage,L3,strain,N2,genotype,wild type,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN14212997,BioSample,XREF_LINK,DB: bioproject,ID: 608907,LABEL: PRJNA608907,<NA>,<NA>,<NA>,<NA>,6239,WT total mRNA Replicate 1,GSE145983,<NA>,<NA>,GEO,GSE145983,PRJNA608907,BioProject,<NA>,<NA>,<NA>,\"We identified more than 300 genes inversely regulated by ced-3 and pmk-1 that enriched for epidermal stress response factors in C elegans Overall design: We analyzed total mRNA and ribosome-associated mRNAs at the L3 stage for wild type, ced-3(n717), and pmk-1(km25) strains with two independent biological replicates\",Analyses of CED-3 caspase and PMK-1 p38 MAPK in gene regulation in C elegans,Transcriptome Analysis,SRA1048439,GEO: GSE145983,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098753,GSM4148088: Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611015,GSM4148088,Illumina HiSeq 2500,50180090,1461952152,SRR10398500,50180090,2509004500,GSM4148088,GEO Accession,GSM4148088,<NA>,<NA>,<NA>,GSM4148088,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148088,LABEL: GSM4148088,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611015,<NA>,SINGLE,SAMN13190923,SRS5611015,2509004500,<NA>,Caenorhabditis elegans,GSM4148088,Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3,6239,GSM4148088_r1,656429021,596900728,610841384,37276,644796091,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:47:46,Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz,790a2636a2df58b143c70090c99b119e,fastq,1977390816,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398500/Slee141_mRNAseqFP_meg34_JP1_GTGAAA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010154/SRR10398500,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398500/SRR10398500.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398500/SRR10398500.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:48:51,SRR10398500,a601ff03e04e3b0de9fa9a2e58441bec,run,1461953898,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra18/SRR/010154/SRR10398500,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2509004500,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190923,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee141_mRNAseqFP_meg34_3: meg-3meg-4 mRNAseq-3,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098752,GSM4148087: Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611014,GSM4148087,Illumina HiSeq 2500,59848989,1748019918,SRR10398499,59848989,2992449450,GSM4148087,GEO Accession,GSM4148087,<NA>,<NA>,<NA>,GSM4148087,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148087,LABEL: GSM4148087,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611014,<NA>,SINGLE,SAMN13190924,SRS5611014,2992449450,<NA>,Caenorhabditis elegans,GSM4148087,Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2,6239,GSM4148087_r1,779513578,712500026,731765736,43914,768626196,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:47:55,Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz,7eae8d165cb323700cd05e4fcac15634,fastq,2351880177,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398499/Slee139_mRNAseqFP_meg34_SL_2_GCCAAT.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/010154/SRR10398499,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398499/SRR10398499.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398499/SRR10398499.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:50:30,SRR10398499,7505a1f8b4c18b6177570065b4d0642b,run,1748021666,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra70/SRR/010154/SRR10398499,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2992449450,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190924,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee139_mRNAseqFP_meg34_2: meg-3meg-4 mRNAseq-2,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098751,GSM4148086: Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611013,GSM4148086,Illumina HiSeq 2500,17823378,553495038,SRR10398498,17823378,891168900,GSM4148086,GEO Accession,GSM4148086,<NA>,<NA>,<NA>,GSM4148086,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148086,LABEL: GSM4148086,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611013,<NA>,SINGLE,SAMN13190925,SRS5611013,891168900,<NA>,Caenorhabditis elegans,GSM4148086,Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1,6239,GSM4148086_r1,236719557,208649845,213767928,47004,231984566,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:41:44,Slee125_meg34_embforFP_TGACCA.fastq.gz,dfbd152cd1e31d00701a38ce6427ef8b,fastq,735406084,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398498/Slee125_meg34_embforFP_TGACCA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398498,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398498/SRR10398498.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398498/SRR10398498.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:42:12,SRR10398498,0a34d177ee4ce19c94725aad9d997f7d,run,553496783,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398498,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,891168900,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190925,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee125_mRNAseqFP_meg34_1: meg-3meg-4 mRNAseq-1,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098750,GSM4148085: Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611012,GSM4148085,Illumina HiSeq 2500,64787771,1883244063,SRR10398497,64787771,3239388550,GSM4148085,GEO Accession,GSM4148085,<NA>,<NA>,<NA>,GSM4148085,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148085,LABEL: GSM4148085,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611012,<NA>,SINGLE,SAMN13190926,SRS5611012,3239388550,<NA>,Caenorhabditis elegans,GSM4148085,Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3,6239,GSM4148085_r1,856186524,762830092,773586474,47566,846737894,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:45:01,Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz,803fdcd6b531067e665f8f18d4fbb9c9,fastq,2529250772,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398497/Slee142_mRNAseqFP_N2_3_ATGTCA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/010154/SRR10398497,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398497/SRR10398497.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398497/SRR10398497.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:46:23,SRR10398497,6b6e67d3ebb7cf25c89a3ea084a5edc1,run,1883245812,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra72/SRR/010154/SRR10398497,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3239388550,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190926,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee142_mRNAseqFP_N2_3: wild type mRNAseq-3,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098749,GSM4148084: Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611011,GSM4148084,Illumina HiSeq 2500,54109682,1574815163,SRR10398496,54109682,2705484100,GSM4148084,GEO Accession,GSM4148084,<NA>,<NA>,<NA>,GSM4148084,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148084,LABEL: GSM4148084,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611011,<NA>,SINGLE,SAMN13190927,SRS5611011,2705484100,<NA>,Caenorhabditis elegans,GSM4148084,Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2,6239,GSM4148084_r1,715634947,637414540,645826922,40195,706567496,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:42:57,Slee138_mRNAseqFP_N2_2.fastq.gz,6298f503217039ca51f225c61d385ea1,fastq,2151342606,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398496/Slee138_mRNAseqFP_N2_2.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010154/SRR10398496,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398496/SRR10398496.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398496/SRR10398496.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:44:07,SRR10398496,e67b12feff28d5c85e641eb84fcd71e9,run,1574816909,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra31/SRR/010154/SRR10398496,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2705484100,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190927,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee138_mRNAseqFP_N2_2: wild type mRNAseq-2,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098748,GSM4148083: Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS5611010,GSM4148083,Illumina HiSeq 2500,53153078,1518355802,SRR10398495,53153078,2657653900,GSM4148083,GEO Accession,GSM4148083,<NA>,<NA>,<NA>,GSM4148083,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148083,LABEL: GSM4148083,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611010,<NA>,SINGLE,SAMN13190928,SRS5611010,2657653900,<NA>,Caenorhabditis elegans,GSM4148083,Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1,6239,GSM4148083_r1,734420835,594181567,603850976,272197,724928325,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:41:56,Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz,66243c579988cefc50cb73111ac3cf91,fastq,2069386069,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398495/Slee113_N2_H5M33BCX2_1_ACAGTG_1.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/010154/SRR10398495,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398495/SRR10398495.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398495/SRR10398495.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:42:40,SRR10398495,e024149ee56beaad1d57bc031784ccb1,run,1518357552,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra10/SRR/010154/SRR10398495,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2657653900,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,Ribo-Zero treated total RNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190928,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee113_mRNAseqFP_N2_1: wild type mRNAseq-1,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098747,GSM4148082: Slee135_meg34: meg-3meg-4 Riboseq-3; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611009,GSM4148082,Illumina HiSeq 2500,117347118,3430391353,SRR10398494,117347118,5867355900,GSM4148082,GEO Accession,GSM4148082,<NA>,<NA>,<NA>,GSM4148082,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148082,LABEL: GSM4148082,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611009,<NA>,SINGLE,SAMN13190929,SRS5611009,5867355900,<NA>,Caenorhabditis elegans,GSM4148082,Slee135_meg34: meg-3meg-4 Riboseq-3,6239,GSM4148082_r1,1119246168,1642504211,1582932236,82596,1522590689,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:49:30,Slee135_meg34_JP1_CAGATC.fastq.gz,6f256cff8675b5a0b357e4abe569c703,fastq,3923042444,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398494/Slee135_meg34_JP1_CAGATC.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398494,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398494/SRR10398494.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398494/SRR10398494.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:51:45,SRR10398494,efbc8db63ccb943e5c0fc9276ee2fd72,run,3430393099,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra26/SRR/010154/SRR10398494,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,5867355900,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190929,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee135_meg34: meg-3meg-4 Riboseq-3,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098746,GSM4148081: Slee133_meg34: meg-3meg-4 Riboseq-2; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611008,GSM4148081,Illumina HiSeq 2500,107081543,3125393193,SRR10398493,107081543,5354077150,GSM4148081,GEO Accession,GSM4148081,<NA>,<NA>,<NA>,GSM4148081,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148081,LABEL: GSM4148081,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611008,<NA>,SINGLE,SAMN13190905,SRS5611008,5354077150,<NA>,Caenorhabditis elegans,GSM4148081,Slee133_meg34: meg-3meg-4 Riboseq-2,6239,GSM4148081_r1,1005815846,1505849239,1424889751,75413,1417446901,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:48:29,Slee133_meg34_my_ACAGTG.fastq.gz,594d69d056915f2c1bd7e0841b8c35ad,fastq,3546501643,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398493/Slee133_meg34_my_ACAGTG.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010154/SRR10398493,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398493/SRR10398493.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398493/SRR10398493.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:50:32,SRR10398493,877ed87637bd8b87e64e48c1e3b3ce8d,run,3125394939,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra41/SRR/010154/SRR10398493,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,5354077150,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190905,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee133_meg34: meg-3meg-4 Riboseq-2,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098745,GSM4148080: Slee123_meg34: meg-3meg-4 Riboseq-1; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611007,GSM4148080,Illumina HiSeq 2500,35703383,867677732,SRR10398492,35703383,1785169150,GSM4148080,GEO Accession,GSM4148080,<NA>,<NA>,<NA>,GSM4148080,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148080,LABEL: GSM4148080,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611007,<NA>,SINGLE,SAMN13190906,SRS5611007,1785169150,<NA>,Caenorhabditis elegans,GSM4148080,Slee123_meg34: meg-3meg-4 Riboseq-1,6239,GSM4148080_r1,364456742,468615534,453999771,147848,497949255,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:40:06,Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz,de78001ddc02f5395bcdeee23332a076,fastq,976731160,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398492/Slee123_meg34_HFWH7BCX2_1_GCCAAT.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010154/SRR10398492,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398492/SRR10398492.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398492/SRR10398492.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:40:50,SRR10398492,c5866e045e4fd2597312faf9830c556f,run,867679482,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra71/SRR/010154/SRR10398492,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1785169150,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190906,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee123_meg34: meg-3meg-4 Riboseq-1,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098744,GSM4148079: Slee136_N2: wild type Riboseq-3; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611006,GSM4148079,Illumina HiSeq 2500,121439833,3342082520,SRR10398491,121439833,6071991650,GSM4148079,GEO Accession,GSM4148079,<NA>,<NA>,<NA>,GSM4148079,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148079,LABEL: GSM4148079,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611006,<NA>,SINGLE,SAMN13190907,SRS5611006,6071991650,<NA>,Caenorhabditis elegans,GSM4148079,Slee136_N2: wild type Riboseq-3,6239,GSM4148079_r1,1145148269,1700523165,1639975454,83417,1586261345,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:48:35,Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz,217d56f396c8074a6eea49e1ec7ee657,fastq,3755068572,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398491/Slee136_N2_HKV57BCX2_1_ACTTGA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010154/SRR10398491,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398491/SRR10398491.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398491/SRR10398491.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:50:54,SRR10398491,1e9c44b5fcca0f10f46c83e20270f9f3,run,3342084266,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra38/SRR/010154/SRR10398491,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,6071991650,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190907,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee136_N2: wild type Riboseq-3,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098743,GSM4148078: Slee132_N2: wild type Riboseq-2; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611005,GSM4148078,Illumina HiSeq 2500,134995957,3934664046,SRR10398490,134995957,6749797850,GSM4148078,GEO Accession,GSM4148078,<NA>,<NA>,<NA>,GSM4148078,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148078,LABEL: GSM4148078,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611005,<NA>,SINGLE,SAMN13190908,SRS5611005,6749797850,<NA>,Caenorhabditis elegans,GSM4148078,Slee132_N2: wild type Riboseq-2,6239,GSM4148078_r1,1475636242,1728625645,1779005140,94523,1766436300,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:50:29,Slee132_N2_2_TGACCA.fastq.gz,f16adaedc5f56747b4880f45c8436939,fastq,4564826338,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398490/Slee132_N2_2_TGACCA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010154/SRR10398490,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398490/SRR10398490.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398490/SRR10398490.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:53:04,SRR10398490,09968d70669715db1de9b19d0a09fa6e,run,3934665793,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra36/SRR/010154/SRR10398490,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,6749797850,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190908,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee132_N2: wild type Riboseq-2,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP228538,SRX7098742,GSM4148077: Slee111_N2: wild type Riboseq-1; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS5611004,GSM4148077,Illumina HiSeq 2500,76408239,1744253035,SRR10398489,76408239,3820411950,GSM4148077,GEO Accession,GSM4148077,<NA>,<NA>,<NA>,GSM4148077,\"Isolated embyros were freezed in liquied nitrogen with lysis buffer containing cycloheximide to stall ribosome. Freezed embryos were lyzed by freezer mill. Samples were cleared by centrifugation. Cleared lysates were then subject to ribosome profiling and RNAseq experiments For mRNAseq,  500ng of total RNA were subjected to Ribozero kit (illumina, MRZE706) to remove rRNA. Libraries were constructed using Truseq Library Prep Kit V2. For Ribosome profiling, library preparation protocol is descrbied in Wu et al., 2019 Mol. Cell.\",<NA>,XREF_LINK,DB: gds,ID: 304148077,LABEL: GSM4148077,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS5611004,<NA>,SINGLE,SAMN13190909,SRS5611004,3820411950,<NA>,Caenorhabditis elegans,GSM4148077,Slee111_N2: wild type Riboseq-1,6239,GSM4148077_r1,867058546,968334260,948800070,19434,1036199640,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-12-02 22:03:20,anonymous,worldwide,AWS,https://sra-pub-src-2.s3.amazonaws.com/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1,gcp identity,gs.US,GCP,gs://sra-pub-src-2/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:43:04,Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz,34689e4808fa6445e982d3ab7d310d95,fastq,1956921843,0,Original,https://sra-pub-src-2.s3.amazonaws.com/SRR10398489/Slee111_N2_HWCCTBCXY_2_ACTTGA.fastq.gz.1,anonymous,worldwide,NCBI,https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010154/SRR10398489,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR10398489/SRR10398489.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR10398489/SRR10398489.1,<NA>,<NA>,<NA>,<NA>,public,2019-11-06 03:44:25,SRR10398489,c0667438c003beb26481caae164c64a3,run,1744254785,1,Primary ETL,https://sra-download.ncbi.nlm.nih.gov/traces/sra3/SRR/010154/SRR10398489,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3820411950,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Embryo,tissue,mixed early embryo,molecule subtype,RNaseI treated Ribo-Zero treated ribosome bound RNA fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN13190909,BioSample,XREF_LINK,DB: bioproject,ID: 587444,LABEL: PRJNA587444,<NA>,<NA>,<NA>,<NA>,6239,Slee111_N2: wild type Riboseq-1,GSE139880,parent_bioproject,PRJNA587431,GEO,GSE139880,PRJNA587444,BioProject,XREF_LINK,DB: pubmed,ID: 31975687,RNA granules are cellular condensates that contain RNAs and proteins. The mechanism that drive the recruitment of many mRNAs to RNA granules are not fully understood.  Here we characterize the assembly and transcriptome of the germ (P) granules of C. elegans. We find that mRNAs are recruited into P granules by condensation with the intrinsically-disordered protein MEG-3. MEG-3 binds ~500 mRNAs in C. elegans embryos in a sequence-independent manner that favors mRNAs with low ribosome coverage. Translational stress causes additional mRNAs to localize to P granules and translational activation correlates with P granule exit for two mRNAs coding for germ cell fate regulators. MEG-3/RNA condensates assembled in vitro are gel-like and trap mRNAs in a non-dynamic state. Our observations reveal similarities between P granules and stress granules and identify gelation with intrinsically-disordered proteins as a sequence-independent mechanism to enrich low-translation mRNAs in RNA granules Overall design: 12 embryonic samples are included in this submission. It contains 6 RNAseq (3 wild type and 3 meg-3meg-4 mutant) and 6 corresponding ribosome profiling (3 wild type and 3 meg-3meg-4 mutant).,Recruitment of mRNAs to P granules by gelation with intrinsically-disordered proteins (RNAseq and ribosome profiling),Other,SRA991333,GEO: GSE139880,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP149446,SRX4147684,GSM3168388: C. elegans embryos ribosome profiling; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS3361274,GSM3168388,Illumina HiSeq 2500,76408239,1744253035,SRR7241911,76408239,3820411950,GSM3168388,GEO Accession,GSM3168388,<NA>,<NA>,<NA>,GSM3168388,\"Lysates were clarified and monosomes were isolated by sucrose gradient centrifugation after RNaseI treatment. RNA was extracted using SDS/hot phenol/chloroform. Fragments ranging from 15-34 nt were gel purified and rRNA was depleted from this pool through Ribo-Zero Gold treatment. Upon dephosphorylation of sample RNA, linker was ligated and this product was once again gel purified. This was followed by reverse transcription as well as circularization of cDNAs. PCR amplification of this library was then sent for sequencing.\",<NA>,XREF_LINK,DB: gds,ID: 303168388,LABEL: GSM3168388,<NA>,<NA>,<NA>,ILLUMINA,<NA>,<NA>,<NA>,SRS3361274,<NA>,SINGLE,SAMN09288722,SRS3361274,3820411950,<NA>,Caenorhabditis elegans,GSM3168388,C. elegans embryos ribosome profiling,6239,GSM3168388_r1,867058546,968334260,948800070,19434,1036199640,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2019-01-28 15:33:07,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-5/SRR7241911/N2.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-5/SRR7241911/N2.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-02-25 05:08:44,<NA>,3b6b6a97f17d864fac0ae2c2be7d6552,fastq,1956921805,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-13/SRR7241911/SRR7241911.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-14/SRR7241911/SRR7241911.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-4/SRR7241911/SRR7241911.1,gcp identity,gs.US,GCP,gs://sra-pub-run-4/SRR7241911/SRR7241911.1,public,2018-05-31 12:14:01,SRR7241911,224740e2b27a4b736fb1687ccb1a6c1b,run,1744254785,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-14/SRR7241911/SRR7241911.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3820411950,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,C. elegans embryos ribosome profiling,tissue,embryos,molecule subtype,Ribosome Protected mRNA (15-34 nt),<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN09288722,BioSample,XREF_LINK,DB: bioproject,ID: 473989,LABEL: PRJNA473989,<NA>,<NA>,<NA>,<NA>,6239,C. elegans embryos ribosome profiling,GSE115161,parent_bioproject,PRJNA473984,GEO,GSE115161,PRJNA473989,BioProject,<NA>,<NA>,<NA>,\"Ribosomes undergo substantial conformational changes during translation elongation to accommodate incoming aminoacyl-tRNAs and translocate along the mRNA template. We used multiple elongation inhibitors and chemical probing to define ribosome conformational states corresponding to different sized ribosome-protected mRNA fragments (RPFs) generated by ribosome profiling. We show using various genetic and environmental perturbations that the previously identified 20-22 nucleotide (nt) RPFs correspond predominantly to ribosomes in a pre-accommodation state with an open 40S ribosomal A site while the classical 27-29 nt fragments correspond to ribosomes in a pre-translocation state with an occupied 40S ribosomal A site. These distinct ribosome conformational states revealed by ribosome profiling are seen in all eukaryotes tested including fungi, worms and mammals. This high-resolution ribosome profiling approach reveals the anticipated Rck2-dependent inhibition of translocation through eEF2 phosphorylation during hyperosmotic stress. These same approaches reveal a strong translation elongation arrest during oxidative stress where the ribosomes are trapped in a pre-translocation state, but in this case the translational arrest is independent of Rck2-driven eEF2 phosphorylation. These results provide new insights and approaches for defining the molecular events that impact translation elongation throughout biology. Overall design: 24 biological samples are included for ribosome footprinting samples. These include HeLa, MB-MDA-231 and yeast cells and C. elegans embryos.\",Regulation of Translation Elongation Revealed by Ribosome Profiling [Dataset_4],Other,SRA713167,GEO: GSE115161,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP093364,SRX2352818,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,138903638,3355135395,SRR5026637,138903638,6945181900,Celegans_post_dauer_4h,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",<NA>,<NA>,Celegans_post_dauer_4h,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,6945181900,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,4h.riboseq,1488367505,1440112663,2120383213,5163569,1891154950,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"138903638\"\" /><Elements count=\"\"6945181900\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-8/SRR5026637/4h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-8/SRR5026637/4h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-01 07:47:34,<NA>,13748e5462e1ec6041f7edaac18ebfab,fastq,5253783950,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026637/SRR5026637.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026637/SRR5026637.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR5026637/SRR5026637.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR5026637/SRR5026637.1,public,2016-12-21 13:09:36,SRR5026637,d4602ae0b49b56af106297de299b24aa,run,3355136924,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026637/SRR5026637.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,6945181900,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP093364,SRX2352801,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,139378431,3450860219,SRR5026603,139378431,6968921550,Celegans_3h_post_dauer,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",<NA>,<NA>,Celegans_3h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,6968921550,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,3h.riboseq,1460936703,1466941582,2136536817,5153562,1899352886,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"139378431\"\" /><Elements count=\"\"6968921550\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-4/SRR5026603/3h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-4/SRR5026603/3h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-01 07:47:25,<NA>,e8723fd9a96833bf57d268318a2bbdfd,fastq,5431691664,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026603/SRR5026603.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026603/SRR5026603.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR5026603/SRR5026603.1,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR5026603/SRR5026603.1,public,2016-12-21 10:24:22,SRR5026603,c0f444f972b31d7c457490fbc5de6408,run,3450861748,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026603/SRR5026603.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,6968921550,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP093364,SRX2352796,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,109643569,2602261551,SRR5026592,109643569,5482178450,Celegans_2h_post_dauer,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",<NA>,<NA>,Celegans_2h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,5482178450,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,2h.riboseq,1157521325,1112387324,1680370083,4058792,1527840926,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"109643569\"\" /><Elements count=\"\"5482178450\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-8/SRR5026592/2h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-8/SRR5026592/2h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-01 06:48:29,<NA>,02f04689891068eb9fe68f8f99aaee80,fastq,3946715094,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026592/SRR5026592.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026592/SRR5026592.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR5026592/SRR5026592.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR5026592/SRR5026592.1,public,2016-12-21 07:03:41,SRR5026592,896bcf9a683156dd100a6fc513cef181,run,2602263079,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026592/SRR5026592.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,5482178450,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP093364,SRX2352779,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,125934593,3035330434,SRR5026589,125934593,6296729650,Celegans_1h_post_dauer,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (Aeschimann et al. 2015), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",<NA>,<NA>,Celegans_1h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,6296729650,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,1h.riboseq,1262039504,1297158829,1975704211,5892661,1755934445,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"125934593\"\" /><Elements count=\"\"6296729650\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-5/SRR5026589/1h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-5/SRR5026589/1h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-03 14:38:32,<NA>,010dac39f64f9ae9cec6d5c16d69b81e,fastq,4735630889,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026589/SRR5026589.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026589/SRR5026589.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR5026589/SRR5026589.1,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR5026589/SRR5026589.1,public,2016-12-20 11:30:53,SRR5026589,cf21be976e011645edc8e654328e6564,run,3035331963,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026589/SRR5026589.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,6296729650,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP093364,SRX2352572,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,66094062,1613138917,SRR5026359,66094062,3304703100,Celegans_0.5h_post_dauer,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (PMID: 26102273), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",<NA>,<NA>,Celegans_0.5h_post_dauer,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,3304703100,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,0-5h.riboseq,676902968,711204979,1023398877,1356087,891840189,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"66094062\"\" /><Elements count=\"\"3304703100\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-7/SRR5026359/0-5h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-7/SRR5026359/0-5h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-03 07:38:53,<NA>,f2ae040a036eef3b6afaa70412779eb4,fastq,2524982092,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026359/SRR5026359.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026359/SRR5026359.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-4/SRR5026359/SRR5026359.1,gcp identity,gs.US,GCP,gs://sra-pub-run-4/SRR5026359/SRR5026359.1,public,2016-12-20 08:03:41,SRR5026359,4df663100fb2692b249c24411e845cd4,run,1613140446,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026359/SRR5026359.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3304703100,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP093364,SRX2349147,Bayesian Prediction of RNA Translation from Ribosome Profiling,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,unspecified,SRS1799345,DAUER_0h,Illumina HiSeq 2000,335001052,8622020036,SRR5026356,335001052,16750052600,Celegans_0h_post_dauer,<NA>,<NA>,1,<NA>,\"The ribosome profiling experiments were performed according to our published detailed protocol (6), with monosomes purified using size exclusion chromatography and libraries sequenced on an Illumina HiSeq 2000 machine.\",SAMN06017629,<NA>,Dauer_0h,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1799345,50,SINGLE,SAMN06017629,SRS1799345,16750052600,<NA>,Caenorhabditis elegans,DAUER_0h,<NA>,6239,RiboSeq_0h_post_dauer,3341432627,3503233191,5118789672,155609475,4630987635,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"335001052\"\" /><Elements count=\"\"16750052600\"\" /></Statistics></Table></Database>\",true,true,2017-11-15 00:01:15,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-8/SRR5026356/0h.riboseq.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-8/SRR5026356/0h.riboseq.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-03 08:38:22,<NA>,3a6e35bd2b2210e630e121fd8b7ad990,fastq,13239832190,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos2/sra-pub-run-9/SRR5026356/SRR5026356.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026356/SRR5026356.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR5026356/SRR5026356.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR5026356/SRR5026356.1,public,2016-12-19 18:24:02,SRR5026356,9631a8d7680378af7ccf7ca30085cca5,run,8622021565,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos1/sra-pub-run-10/SRR5026356/SRR5026356.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,16750052600,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,N2,dev_stage,Dauer,sex,hermaphrodite,tissue,whole body,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN06017629,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,<NA>,PRJNA353604,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA353604,BioProject,<NA>,<NA>,<NA>,Bayesian Prediction of RNA Translation from Ribosome Profiling in C. elegans,Caenorhabditis elegans strain:N2 Transcriptome or Gene expression,Whole Genome Sequencing,SRA494245,Celegans_RPBP,<NA>,University Heidelberg,Bioinformatics and Systems Cardiology,C.elegans data set for Bayesian Prediction of RNA Translation from Ribosome Profiling,<NA>\nSRP064516,SRX1626372,unc-54(cc3389) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335846,SJA131,Illumina MiSeq,3200939,79101256,SRR3219264,3200939,176051645,SJA131M,<NA>,<NA>,1,<NA>,\"Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.\",<NA>,<NA>,SJA131M,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1335846,30,SINGLE,SAMN04546343,SRS1335846,176051645,<NA>,Caenorhabditis elegans,SJA131,unc-54(cc3389) homozygotes,6239,SJA131M,53387587,42673445,45536318,0,34454295,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"3200939\"\" /><Elements count=\"\"176051645\"\" /></Statistics></Table></Database>\",true,true,2016-05-18 14:37:47,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-8/SRR3219264/131M_S6_L001_R1_001.fastq,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-8/SRR3219264/131M_S6_L001_R1_001.fastq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-17 14:08:10,<NA>,e5e911e1d18e08c0f0b7f25f30b75ff3,fastq,539123454,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR3219264/SRR3219264.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219264/SRR3219264.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR3219264/SRR3219264.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR3219264/SRR3219264.1,public,2016-03-11 14:21:07,SRR3219264,dfd37af28dbd9d4e42293abeb80d15d3,run,79102196,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219264/SRR3219264.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,176051645,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,PD3389,isolate,unc-54(cc3389),dev_stage,L4,sex,hermaphrodite,tissue,whole organism,collection_date,24-Jan-2016,growth_protocol,XL NGM plates seeded with OP50,BioSampleModel,Model organism or animal,<NA>,SAMN04546343,BioSample,XREF_LINK,DB: bioproject,ID: 297873,LABEL: PRJNA297873,<NA>,<NA>,<NA>,<NA>,6239,unc-54(cc3389) homozygotes,PRJNA297873,<NA>,<NA>,BioProject,Caenorhabditis elegans,PRJNA297873,BioProject,XREF_LINK,DB: pubmed,ID: 27281202,\"A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.\",Translation Readthrough Mitigation,Other,SRA384301,SJA131,<NA>,Stanford Univerisy,Pathology,SJA131 (unc-54(cc3389)),<NA>\nSRP064516,SRX1626361,unc-54(+) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335837,SJA130,Illumina MiSeq,2845260,69990868,SRR3219253,2845260,156489300,SJA130M,<NA>,<NA>,1,<NA>,\"Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.\",<NA>,<NA>,SJA130M,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1335837,30,SINGLE,SAMN04546334,SRS1335837,156489300,<NA>,Caenorhabditis elegans,SJA130,unc-54(e1301) homozygotes,6239,SJA130M,47109133,37898612,38879415,0,32602140,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"2845260\"\" /><Elements count=\"\"156489300\"\" /></Statistics></Table></Database>\",true,true,2016-05-18 14:38:02,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-5/SRR3219253/130M_S4_L001_R1_001.fastq,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-5/SRR3219253/130M_S4_L001_R1_001.fastq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-17 17:07:19,<NA>,8d6d622e5286d92754253580920f5c2f,fastq,479216622,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR3219253/SRR3219253.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219253/SRR3219253.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR3219253/SRR3219253.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR3219253/SRR3219253.1,public,2016-03-11 14:21:03,SRR3219253,437d25fc9650403251fbe2db5375da93,run,69991807,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219253/SRR3219253.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,156489300,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,PD2013,isolate,unc-54(e1301),dev_stage,L4,sex,hermaphrodite,tissue,whole organism,collection_date,24-Jan-2016,BioSampleModel,Model organism or animal,<NA>,<NA>,<NA>,SAMN04546334,BioSample,XREF_LINK,DB: bioproject,ID: 297873,LABEL: PRJNA297873,<NA>,<NA>,<NA>,<NA>,6239,unc-54(e1301) homozygotes,PRJNA297873,<NA>,<NA>,BioProject,Caenorhabditis elegans,PRJNA297873,BioProject,XREF_LINK,DB: pubmed,ID: 27281202,\"A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.\",Translation Readthrough Mitigation,Other,SRA384300,SJA130,<NA>,Stanford Univerisy,Pathology,SJA130 (unc-54(e1301)),<NA>\nSRP064516,SRX1626357,unc-54(+) Ribo-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,other,SRS1335834,SJA129,Illumina MiSeq,3407482,84664325,SRR3219248,3407482,187411510,SJA129M,<NA>,<NA>,1,<NA>,\"Ribosome footprint profiling Ribo-seq, using 3'ligation with AF-JA-34.2 and circular DNA ligase.\",<NA>,<NA>,SJA129M,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS1335834,30,SINGLE,SAMN04546333,SRS1335834,187411510,<NA>,Caenorhabditis elegans,SJA129,unc-54(+) homozygotes,6239,SJA129M,57094872,44809730,46994910,0,38511998,<NA>,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,\"<Database><Table name=\"\"SEQUENCE\"\"><Statistics source=\"\"meta\"\"><Rows count=\"\"3407482\"\" /><Elements count=\"\"187411510\"\" /></Statistics></Table></Database>\",true,true,2016-05-18 14:37:55,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-6/SRR3219248/129M_S2_L001_R1_001.fastq,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-6/SRR3219248/129M_S2_L001_R1_001.fastq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-17 14:07:17,<NA>,e10d5eada3dff418ce3a9ab606dbc8a6,fastq,573910581,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR3219248/SRR3219248.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219248/SRR3219248.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR3219248/SRR3219248.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR3219248/SRR3219248.1,public,2016-03-11 14:23:41,SRR3219248,09976d20d5fafb0b5d2b76d4ebddf427,run,84665264,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR3219248/SRR3219248.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,187411510,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,strain,VC2010,isolate,PD1074,dev_stage,L4,sex,hermaphrodite,tissue,whole organism,collection_date,24-Jan-2016,growth_protocol,XL NGM plates seeded with OP50,BioSampleModel,Model organism or animal,<NA>,SAMN04546333,BioSample,XREF_LINK,DB: bioproject,ID: 297873,LABEL: PRJNA297873,<NA>,<NA>,<NA>,<NA>,6239,unc-54(+) homozygotes,PRJNA297873,<NA>,<NA>,BioProject,Caenorhabditis elegans,PRJNA297873,BioProject,XREF_LINK,DB: pubmed,ID: 27281202,\"A fraction of ribosomes engaged in translation will fail to terminate when reaching a stop codon, yielding nascent proteins inappropriately extended on their C-termini. Although such extended proteins can interfere with normal cellular processes, known mechanisms of translational surveillance are insufficient to protect cells from potential dominant consequences. Using C. elegans, we demonstrate a consistent ability of cells to block accumulation of C-terminal extended proteins that result from failure to terminate at stop codons. These repressive effects are mediated through decreased protein accumulation without a detectable effect on mRNA levels. 3’UTR-encoded peptides are sufficient to confer the observed effects, suggesting a co- or post-translational mechanism of action. We suggest 3’UTRs may be optimized for sequences that destabilize the attached protein, providing a surveillance mechanism for unwelcome/inadmissible and varied translation errors.\",Translation Readthrough Mitigation,Other,SRA384295,SJA129RZ,<NA>,Stanford Univerisy,Pathology,SJA129 (unc-54(+)),<NA>\nSRP055039,SRX878014,GSM1611598: frac_26-34nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845968,GSM1611598,Illumina HiSeq 2000,50364078,1532513718,SRR1804351,50000000,2500000000,GSM1611598,GEO Accession,GSM1611598,<NA>,GEO,<NA>,GSM1611598,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611598,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611598,<NA>,XREF_LINK,DB: gds,ID: 301611598,ILLUMINA,<NA>,<NA>,<NA>,SRS845968,<NA>,SINGLE,SAMN03349121,SRS845968,2518203900,<NA>,Caenorhabditis elegans,GSM1611598,frac_26-34nt,6239,GSM1611598_r1,493565775,463995023,748665620,85322693,708450889,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR1804351/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR1804351/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-30 14:16:06,<NA>,4705b3e5f6cb66db7234826987570aa9,fastq,2007720705,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804351/SRR1804351.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804351/SRR1804351.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804351/SRR1804351.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804351/SRR1804351.1,public,2015-02-14 16:25:44,SRR1804351,9ccd957adca3a1c584fd1974666af6d6,run,1532515463,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804351/SRR1804351.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2500000000,false,SRR1804352,GSM1611598_r2,3660196,3327131,4865116,2185658,4165799,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,true,true,2018-02-12 16:55:10,9743361,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR1804352/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_002.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR1804352/BSSE_QGF_10403_121218_SN792_0194_AD1FBUACXX_8_GCCAAT_L008_R1_002.fastq.gz,public,2020-05-02 11:28:44,88970fc3484ce2f9e0e771f7ae750437,fastq,14495316,0,Original,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804352/SRR1804352.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804352/SRR1804352.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804352/SRR1804352.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804352/SRR1804352.1,public,2015-02-14 16:18:00,SRR1804352,b76dc871990ec82537e86b8b3b32865a,run,9745113,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804352/SRR1804352.1,1,18203900,false,18203900,364078,source_name,Whole-worm,strain,N2,age,larval stage 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349121,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,frac_26-34nt,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878013,GSM1611597: frac_28-35nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845969,GSM1611597,Illumina HiSeq 2000,66596977,1238978094,SRR1804349,50000000,2500000000,GSM1611597,GEO Accession,GSM1611597,<NA>,GEO,<NA>,GSM1611597,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611597,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611597,<NA>,XREF_LINK,DB: gds,ID: 301611597,ILLUMINA,<NA>,<NA>,<NA>,SRS845969,<NA>,SINGLE,SAMN03349117,SRS845969,3329848850,<NA>,Caenorhabditis elegans,GSM1611597,frac_28-35nt,6239,GSM1611597_r1,472626167,433173853,790016672,377982,803805326,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-12/SRR1804349/BSSE_QGF_10856_130208_SN792_0204_BD1W0VACXX_8_TGACCA_L008_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-12/SRR1804349/BSSE_QGF_10856_130208_SN792_0204_BD1W0VACXX_8_TGACCA_L008_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-30 18:44:27,<NA>,f5b54adf7e46fdedd46d8cad255ed981,fastq,1527124253,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR1804349/SRR1804349.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804349/SRR1804349.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR1804349/SRR1804349.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR1804349/SRR1804349.1,public,2015-02-24 15:26:58,SRR1804349,8233b748ec2563f339c82b60be0fd7c9,run,1238979844,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804349/SRR1804349.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2500000000,false,SRR1804350,GSM1611597_r2,156977287,143696069,262360391,137036,266678067,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,true,true,2018-02-12 16:55:10,416463529,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR1804350/BSSE_QGF_10856_130208_SN792_0204_BD1W0VACXX_8_TGACCA_L008_R1_002.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR1804350/BSSE_QGF_10856_130208_SN792_0204_BD1W0VACXX_8_TGACCA_L008_R1_002.fastq.gz,public,2020-05-01 07:19:59,4271138d37f3427aec5298f140d9fd64,fastq,514134042,0,Original,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804350/SRR1804350.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804350/SRR1804350.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804350/SRR1804350.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804350/SRR1804350.1,public,2015-02-14 16:19:43,SRR1804350,6a0b44d76bf882c50ec58ad457bb2723,run,416465274,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804350/SRR1804350.1,1,829848850,false,829848850,16596977,source_name,Whole-worm,strain,N2,age,larval stage 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349117,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,frac_28-35nt,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878012,GSM1611596: frac_28-30nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845970,GSM1611596,Illumina HiSeq 2000,46376697,1564322597,SRR1804348,46376697,2318834850,GSM1611596,GEO Accession,GSM1611596,<NA>,GEO,<NA>,GSM1611596,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611596,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611596,<NA>,XREF_LINK,DB: gds,ID: 301611596,ILLUMINA,<NA>,<NA>,<NA>,SRS845970,<NA>,SINGLE,SAMN03349114,SRS845970,2318834850,<NA>,Caenorhabditis elegans,GSM1611596,frac_28-30nt,6239,GSM1611596_r1,516028598,491769070,705903773,314058,604819351,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR1804348/BSSE_QGF_10855_130208_SN792_0204_BD1W0VACXX_8_CGATGT_L008_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR1804348/BSSE_QGF_10855_130208_SN792_0204_BD1W0VACXX_8_CGATGT_L008_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-02 03:17:53,<NA>,7e0162e86a03801a5f4dd28ac558c182,fastq,2142088366,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-1/SRR1804348/SRR1804348.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804348/SRR1804348.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-1/SRR1804348/SRR1804348.1,gcp identity,gs.US,GCP,gs://sra-pub-run-1/SRR1804348/SRR1804348.1,public,2015-02-24 15:26:37,SRR1804348,02d1470fa0e2140fda0c05230720c2ac,run,1564324341,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-3/SRR1804348/SRR1804348.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2318834850,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,strain,N2,age,larval stage 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349114,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,frac_28-30nt,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878011,GSM1611595: frac_25-30nt; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845971,GSM1611595,Illumina HiSeq 2000,58434235,1765202980,SRR1804346,50000000,2500000000,GSM1611595,GEO Accession,GSM1611595,<NA>,GEO,<NA>,GSM1611595,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611595,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611595,<NA>,XREF_LINK,DB: gds,ID: 301611595,ILLUMINA,<NA>,<NA>,<NA>,SRS845971,<NA>,SINGLE,SAMN03349115,SRS845971,2921711750,<NA>,Caenorhabditis elegans,GSM1611595,frac_25-30nt,6239,GSM1611595_r1,586839040,574182587,756997279,327819,581653275,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR1804346/BSSE_QGF_10858_130208_SN792_0204_BD1W0VACXX_8_GCCAAT_L008_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR1804346/BSSE_QGF_10858_130208_SN792_0204_BD1W0VACXX_8_GCCAAT_L008_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-30 03:36:19,<NA>,9b6aca5936347e0b1883473eefdeeeed,fastq,2448203020,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1804346/SRR1804346.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804346/SRR1804346.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-4/SRR1804346/SRR1804346.1,gcp identity,gs.US,GCP,gs://sra-pub-run-4/SRR1804346/SRR1804346.1,public,2015-02-24 15:28:00,SRR1804346,3a8d30a3d997783fc99652f851e34f4e,run,1765204729,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804346/SRR1804346.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2500000000,false,SRR1804347,GSM1611595_r2,99089476,96631092,127864278,49597,98077307,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,true,true,2018-02-12 16:55:10,299911254,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR1804347/BSSE_QGF_10858_130208_SN792_0204_BD1W0VACXX_8_GCCAAT_L008_R1_002.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR1804347/BSSE_QGF_10858_130208_SN792_0204_BD1W0VACXX_8_GCCAAT_L008_R1_002.fastq.gz,public,2020-05-02 10:54:14,73f29f4ce4277eb7b972b0271c92e328,fastq,416787944,0,Original,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804347/SRR1804347.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804347/SRR1804347.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804347/SRR1804347.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804347/SRR1804347.1,public,2015-02-14 16:19:02,SRR1804347,898695ecf57b6383fc53644f60fab88c,run,299913003,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804347/SRR1804347.1,1,421711750,false,421711750,8434235,source_name,Whole-worm,strain,N2,age,larval stage 4,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349115,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,frac_25-30nt,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878010,GSM1611594: 04_N2_893_GCkit; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845972,GSM1611594,Illumina HiSeq 2000,48751368,1774440563,SRR1804345,48751368,2486319768,GSM1611594,GEO Accession,GSM1611594,<NA>,GEO,<NA>,GSM1611594,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611594,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611594,<NA>,XREF_LINK,DB: gds,ID: 301611594,ILLUMINA,<NA>,<NA>,<NA>,SRS845972,<NA>,SINGLE,SAMN03349119,SRS845972,2486319768,<NA>,Caenorhabditis elegans,GSM1611594,04_N2_893_GCkit,6239,GSM1611594_r1,730345497,566080787,702045096,355701,487492687,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-12/SRR1804345/BSSE_QGF_15362_131114_SN792_0291_BC35TGACXX_3_CTTGTAA_L003_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-12/SRR1804345/BSSE_QGF_15362_131114_SN792_0291_BC35TGACXX_3_CTTGTAA_L003_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-02 15:44:38,<NA>,4e6511cbb0918b73e747f16dd8e73077,fastq,2460852885,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804345/SRR1804345.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804345/SRR1804345.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804345/SRR1804345.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804345/SRR1804345.1,public,2015-02-14 16:24:48,SRR1804345,ab6823807294a56c0a88805ee471cc18,run,1774442308,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804345/SRR1804345.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2486319768,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,strain,N2,age,young adult,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349119,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,04_N2_893_GCkit,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878009,GSM1611593: 03_N2_893_SGkit; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845973,GSM1611593,Illumina HiSeq 2000,67420201,1803539052,SRR1804343,50000000,2550000000,GSM1611593,GEO Accession,GSM1611593,<NA>,GEO,<NA>,GSM1611593,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611593,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611593,<NA>,XREF_LINK,DB: gds,ID: 301611593,ILLUMINA,<NA>,<NA>,<NA>,SRS845973,<NA>,SINGLE,SAMN03349116,SRS845973,3438430251,<NA>,Caenorhabditis elegans,GSM1611593,03_N2_893_SGkit,6239,GSM1611593_r1,772367233,600519393,692703648,502681,483907045,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR1804343/BSSE_QGF_15361_131114_SN792_0291_BC35TGACXX_3_CAGATCA_L003_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR1804343/BSSE_QGF_15361_131114_SN792_0291_BC35TGACXX_3_CAGATCA_L003_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-02 12:34:01,<NA>,8f8c356db28da864927c3a45274ad79a,fastq,2523746848,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804343/SRR1804343.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804343/SRR1804343.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804343/SRR1804343.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804343/SRR1804343.1,public,2015-02-14 16:25:10,SRR1804343,e7828ed64e58cdbbff1761c3b87aa1b9,run,1803540798,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804343/SRR1804343.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2550000000,false,SRR1804344,GSM1611593_r2,269208933,209069402,241376205,78778,168696933,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,true,true,2018-02-12 16:55:10,633192898,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR1804344/BSSE_QGF_15361_131114_SN792_0291_BC35TGACXX_3_CAGATCA_L003_R1_002.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR1804344/BSSE_QGF_15361_131114_SN792_0291_BC35TGACXX_3_CAGATCA_L003_R1_002.fastq.gz,public,2020-05-02 13:45:50,75723bc9ec3892d0d32ad70ef7c6e950,fastq,886815560,0,Original,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804344/SRR1804344.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804344/SRR1804344.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804344/SRR1804344.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804344/SRR1804344.1,public,2015-02-14 16:20:08,SRR1804344,7a742428a0474b8545e02b72ec5b35aa,run,633194650,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804344/SRR1804344.1,1,888430251,false,888430251,17420201,source_name,Whole-worm,strain,N2,age,young adult,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349116,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,03_N2_893_SGkit,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878008,GSM1611592: 02_N2_893_GCop; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845974,GSM1611592,Illumina HiSeq 2000,52891603,1798510443,SRR1804341,50000000,2550000000,GSM1611592,GEO Accession,GSM1611592,<NA>,GEO,<NA>,GSM1611592,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611592,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611592,<NA>,XREF_LINK,DB: gds,ID: 301611592,ILLUMINA,<NA>,<NA>,<NA>,SRS845974,<NA>,SINGLE,SAMN03349120,SRS845974,2697471753,<NA>,Caenorhabditis elegans,GSM1611592,02_N2_893_GCop,6239,GSM1611592_r1,602084863,537944306,778317239,635426,631018166,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR1804341/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR1804341/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-02 14:41:06,<NA>,8feade7c0a74d7d067cd11bdd436943b,fastq,2510930241,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804341/SRR1804341.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804341/SRR1804341.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804341/SRR1804341.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804341/SRR1804341.1,public,2015-02-14 16:27:11,SRR1804341,b3aac1263865f9139a02f74fc90eff98,run,1798512186,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804341/SRR1804341.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2550000000,false,SRR1804342,GSM1611592_r2,34930898,31054597,44976377,12968,36496913,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,true,true,2018-02-12 16:55:10,107864653,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR1804342/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_002.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR1804342/BSSE_QGF_15359_131114_SN792_0291_BC35TGACXX_3_GCCAATA_L003_R1_002.fastq.gz,public,2020-04-30 01:47:37,7fedae726a673ec501483438c64949c2,fastq,150651832,0,Original,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR1804342/SRR1804342.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804342/SRR1804342.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR1804342/SRR1804342.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR1804342/SRR1804342.1,public,2015-02-14 16:18:20,SRR1804342,c7d0fd1f23e7dcc60b5dd1bb230be773,run,107866400,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR1804342/SRR1804342.1,1,147471753,false,147471753,2891603,source_name,Whole-worm,strain,N2,age,young adult,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349120,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,02_N2_893_GCop,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP055039,SRX878007,GSM1611591: 01_N2_893_SGop; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS845975,GSM1611591,Illumina HiSeq 2000,49787580,1806454729,SRR1804340,49787580,2539166580,GSM1611591,GEO Accession,GSM1611591,<NA>,GEO,<NA>,GSM1611591,\"Worms were lysed, monosomes purified and RNA was isolated using Tri-reagent (MRC). The RNA from the monosomal fraction was separated using a 15% TBE-Urea Gel (Invitrogen) and the region around 28-30 nucleotides (or the region indicated) excised to isolate Ribosome protected fragments (RPFs). The gel piece was forced through a pierced small tube inside an eppendorf tube by centrifugation and RNA from the gel debris was eluted by overnight incubation in 600 µl cracking buffer (20 mM Tris-HCl (pH 7.9), 1 mM EDTA, 400 mM NH4Acetate, 0.5 % SDS). RNA was precipitated with isopropanol at -80 °C for at least 4 hours (isopropanol precipitation). RPFs were 3’ dephosphorylated with 10 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer with 40 Units of RNasin for 1 hour at 37 °C. Following isopropanol precipitation, the RNA samples were ligated to 3’ adapters according to the Illumina® TruSeq™ Small RNA Sample Preparation protocol and using the reagents of the kit, then again precipitated with isopropanol. Ligation products were 5’ phosphorylated for 30 minutes at 37 °C with 15 Units of T4 polynucleotide kinase (NEB) in T4 PNK buffer, 1 mM ATP and 40 Units of RNasin. Following heat-inactivation of the enzyme for 10 minutes at 70 °C, the RNA was precipitated by isopropanol. Ligation to 5’ adapters, reverse transcription, PCR amplification with barcoded primers and gel-purification of the PCR products were performed using the Illumina® TruSeq™ Small RNA Sample Prep kit. The following barcodes were used: RPIX 2, 4, 6, 7, 12\",<NA>,URL_LINK,LABEL: GEO Sample GSM1611591,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1611591,<NA>,XREF_LINK,DB: gds,ID: 301611591,ILLUMINA,<NA>,<NA>,<NA>,SRS845975,<NA>,SINGLE,SAMN03349118,SRS845975,2539166580,<NA>,Caenorhabditis elegans,GSM1611591,01_N2_893_SGop,6239,GSM1611591_r1,631766277,568784013,744259365,586562,593770363,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2018-02-12 16:55:10,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-12/SRR1804340/BSSE_QGF_15358_131114_SN792_0291_BC35TGACXX_3_TGACCAA_L003_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-12/SRR1804340/BSSE_QGF_15358_131114_SN792_0291_BC35TGACXX_3_TGACCAA_L003_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-04-30 11:03:51,<NA>,474a19e996e2826ee0cefe7a5957e4aa,fastq,2556290784,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1804340/SRR1804340.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804340/SRR1804340.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR1804340/SRR1804340.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR1804340/SRR1804340.1,public,2015-02-24 15:35:43,SRR1804340,44e8b1174d10bd6aeeb2cf3697c7ba2c,run,1806456475,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1804340/SRR1804340.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2539166580,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,strain,N2,age,young adult,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,SAMN03349118,BioSample,XREF_LINK,DB: bioproject,ID: 275470,LABEL: PRJNA275470,<NA>,<NA>,<NA>,<NA>,6239,01_N2_893_SGop,GSE65948,<NA>,<NA>,GEO,GSE65948,PRJNA275470,BioProject,XREF_LINK,DB: pubmed,ID: 26102273,\"Experiments for optimization of the ribosome profiling protocol using C. elegans lysates. We report that optimizing the cutting accuracy to a narrow window of 28-30 nucleotides when PAGE-purifying the ribosome-protected fragments (RPFs) significantly improves the quality of the RPF library. In addition, we find that purifying monosomes by sucrose gradient fractionation clearly removed more contaminating ribosomal RNA from the samples compared to the purification by gel filtration columns. Overall design: Experiment 1 (samples 1-4): Comparison between different methods to isolate monosomes and between different library preparations. Experiment 2 (samples 5-8): Optimization of the cutting accuracy to PAGE purify ribosome-protected fragments.\",Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling,Other,SRA242099,GEO: GSE65948,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP049413,SRX747690,GSM1534607: RNASeq_c14_2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734047,GSM1534607,Illumina HiSeq 2500,49019407,1169023236,SRR1635379,49019407,2450970350,GSM1534607,GEO Accession,GSM1534607,<NA>,GEO,<NA>,GSM1534607,Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol,<NA>,URL_LINK,LABEL: GEO Sample GSM1534607,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534607,<NA>,XREF_LINK,DB: gds,ID: 301534607,ILLUMINA,<NA>,<NA>,<NA>,SRS734047,<NA>,SINGLE,SAMN03153517,SRS734047,2450970350,<NA>,Caenorhabditis elegans,GSM1534607,RNASeq_c14_2,6239,GSM1534607_r1,724865454,525274064,588425450,114825,612290557,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-01-08 16:29:17,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-12/SRR1635379/134F4-1_140226_D00404_0047_AC3P05ACXX_CTTGTA-NoIndex_L007_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-12/SRR1635379/134F4-1_140226_D00404_0047_AC3P05ACXX_CTTGTA-NoIndex_L007_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-11 22:15:14,<NA>,d08a4ba71328f05abf9a4fd22a0e8bbd,fastq,2034483190,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635379/SRR1635379.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635379/SRR1635379.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-4/SRR1635379/SRR1635379.1,gcp identity,gs.US,GCP,gs://sra-pub-run-4/SRR1635379/SRR1635379.1,public,2014-10-30 12:24:24,SRR1635379,dc5e2400fc33421ee4eace3610cbf0c9,run,1169024981,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635379/SRR1635379.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2450970350,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,time in development,young adults,strain,\"cey-1 (rrr12), cey-4 (ok858) mutant\",<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN03153517,BioSample,XREF_LINK,DB: bioproject,ID: 265852,LABEL: PRJNA265852,XREF_LINK,DB: bioproject,ID: 265853,LABEL: PRJNA265853,6239,RNASeq_c14_2,GSE62858,parent_bioproject,PRJNA265853,GEO,Caenorhabditis elegans,PRJNA265852,BioProject,XREF_LINK,DB: pubmed,ID: 25378320,\"We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.\",Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq),Transcriptome Analysis,SRA197072,GEO: GSE62858,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP049413,SRX747689,GSM1534606: RNASeq_c14_1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734046,GSM1534606,Illumina HiSeq 2500,63457303,1540925484,SRR1635378,63457303,3172865150,GSM1534606,GEO Accession,GSM1534606,<NA>,GEO,<NA>,GSM1534606,Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol,<NA>,URL_LINK,LABEL: GEO Sample GSM1534606,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534606,<NA>,XREF_LINK,DB: gds,ID: 301534606,ILLUMINA,<NA>,<NA>,<NA>,SRS734046,<NA>,SINGLE,SAMN03153520,SRS734046,3172865150,<NA>,Caenorhabditis elegans,GSM1534606,RNASeq_c14_1,6239,GSM1534606_r1,941279013,666050996,777121810,146748,788266583,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-01-08 16:29:17,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR1635378/134F3-1_140226_D00404_0047_AC3P05ACXX_GGCTAC-NoIndex_L007_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR1635378/134F3-1_140226_D00404_0047_AC3P05ACXX_GGCTAC-NoIndex_L007_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-11 22:15:29,<NA>,dbb04689976a68a3c812963c2def4061,fastq,2669147192,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635378/SRR1635378.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635378/SRR1635378.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR1635378/SRR1635378.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR1635378/SRR1635378.1,public,2014-10-30 12:24:34,SRR1635378,c4deababcde0877038b302e6354e9a5b,run,1540927232,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635378/SRR1635378.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3172865150,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,time in development,young adults,strain,\"cey-1 (rrr12), cey-4 (ok858) mutant\",<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN03153520,BioSample,XREF_LINK,DB: bioproject,ID: 265852,LABEL: PRJNA265852,XREF_LINK,DB: bioproject,ID: 265853,LABEL: PRJNA265853,6239,RNASeq_c14_1,GSE62858,parent_bioproject,PRJNA265853,GEO,Caenorhabditis elegans,PRJNA265852,BioProject,XREF_LINK,DB: pubmed,ID: 25378320,\"We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.\",Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq),Transcriptome Analysis,SRA197072,GEO: GSE62858,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP049413,SRX747688,GSM1534605: RNASeq_N2_2; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734045,GSM1534605,Illumina HiSeq 2500,54290105,1318568086,SRR1635377,54290105,2714505250,GSM1534605,GEO Accession,GSM1534605,<NA>,GEO,<NA>,GSM1534605,Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol,<NA>,URL_LINK,LABEL: GEO Sample GSM1534605,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534605,<NA>,XREF_LINK,DB: gds,ID: 301534605,ILLUMINA,<NA>,<NA>,<NA>,SRS734045,<NA>,SINGLE,SAMN03153515,SRS734045,2714505250,<NA>,Caenorhabditis elegans,GSM1534605,RNASeq_N2_2,6239,GSM1534605_r1,805782067,580966383,661891020,124931,665740849,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-01-08 16:29:17,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR1635377/134F2-1_140226_D00404_0047_AC3P05ACXX_TAGCTT-NoIndex_L007_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR1635377/134F2-1_140226_D00404_0047_AC3P05ACXX_TAGCTT-NoIndex_L007_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-12 19:05:59,<NA>,49241146db0d25570ae1d12c5a47a277,fastq,2282314660,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635377/SRR1635377.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635377/SRR1635377.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR1635377/SRR1635377.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR1635377/SRR1635377.1,public,2014-10-30 12:23:51,SRR1635377,c3e1a33280f98045ce8cee56166fbe09,run,1318569835,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635377/SRR1635377.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2714505250,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,time in development,young adults,strain,N2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN03153515,BioSample,XREF_LINK,DB: bioproject,ID: 265852,LABEL: PRJNA265852,XREF_LINK,DB: bioproject,ID: 265853,LABEL: PRJNA265853,6239,RNASeq_N2_2,GSE62858,parent_bioproject,PRJNA265853,GEO,Caenorhabditis elegans,PRJNA265852,BioProject,XREF_LINK,DB: pubmed,ID: 25378320,\"We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.\",Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq),Transcriptome Analysis,SRA197072,GEO: GSE62858,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP049413,SRX747687,GSM1534604: RNASeq_N2_1; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS734044,GSM1534604,Illumina HiSeq 2500,64579253,1537362492,SRR1635376,64579253,3228962650,GSM1534604,GEO Accession,GSM1534604,<NA>,GEO,<NA>,GSM1534604,Total RNA isolation was performed using Trizol Reagent (Life Technologies). Important: Total RNA was extracted from the same lysate used subsequently for the corresponding ribosome profiling experiment. Library preparation was performed using the ScriptSeq v2 RNA-Seq library preparation kit (Epicentre) according to the manufacturer's protocol,<NA>,URL_LINK,LABEL: GEO Sample GSM1534604,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1534604,<NA>,XREF_LINK,DB: gds,ID: 301534604,ILLUMINA,<NA>,<NA>,<NA>,SRS734044,<NA>,SINGLE,SAMN03153516,SRS734044,3228962650,<NA>,Caenorhabditis elegans,GSM1534604,RNASeq_N2_1,6239,GSM1534604_r1,941585225,671517732,811145455,151602,804562636,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-01-08 16:29:17,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR1635376/134F1-1_140226_D00404_0047_AC3P05ACXX_ACAGTG-NoIndex_L007_R1_001.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR1635376/134F1-1_140226_D00404_0047_AC3P05ACXX_ACAGTG-NoIndex_L007_R1_001.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-11 15:28:42,<NA>,265b4257e5732c4ae710c01bbb52a09e,fastq,2663059402,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR1635376/SRR1635376.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635376/SRR1635376.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-2/SRR1635376/SRR1635376.1,gcp identity,gs.US,GCP,gs://sra-pub-run-2/SRR1635376/SRR1635376.1,public,2014-10-30 12:24:58,SRR1635376,6f85936e84108a1753c03881e2e0eca5,run,1537364240,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR1635376/SRR1635376.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,3228962650,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,Whole-worm,time in development,young adults,strain,N2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN03153516,BioSample,XREF_LINK,DB: bioproject,ID: 265852,LABEL: PRJNA265852,XREF_LINK,DB: bioproject,ID: 265853,LABEL: PRJNA265853,6239,RNASeq_N2_1,GSE62858,parent_bioproject,PRJNA265853,GEO,Caenorhabditis elegans,PRJNA265852,BioProject,XREF_LINK,DB: pubmed,ID: 25378320,\"We present a basic characterization of the function of Y-box binding proteins in C. elegans. Besides playing an important role for fertility in the germline (all four CEY proteins), we found that the presence of CEY-1 and CEY-4 is essential for the assembly of larger polysomes in the soma. We therefore performed ribosome-profiling in combination with total RNA sequencing in wild type and cey-1,-4 double mutant animals to globally compare mRNA levels and their translation status. Overall design: Total RNA sequencing was peformed on RNA extacted from wild type and cey-1,-4 mutant animals in duplicates. Four samples in total.\",Functional characterization of C. elegans Y-box binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes (RNA-Seq),Transcriptome Analysis,SRA197072,GEO: GSE62858,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311785,GSM1169554: Celeg-3-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449537,GSM1169554,Illumina HiSeq 2000,20213950,446723077,SRR914339,20213950,727702200,GSM1169554,GEO Accession,GSM1169554,<NA>,GEO,<NA>,GSM1169554,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169554,<NA>,XREF_LINK,DB: gds,ID: 301169554,ILLUMINA,<NA>,<NA>,<NA>,SRS449537,<NA>,SINGLE,SAMN02209117,SRS449537,727702200,<NA>,Caenorhabditis elegans,GSM1169554,Celeg-3-FED-RPF,6239,GSM1169554_r1,197286514,134780436,195169449,25706,200440095,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-07-22 17:03:37,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR914339/120223_BRISCOE_0086_BD0PE4ACXX_L2_GCCTAA_pf_renamed.fastq,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR914339/120223_BRISCOE_0086_BD0PE4ACXX_L2_GCCTAA_pf_renamed.fastq,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-23 14:17:25,<NA>,8fe3c4b474f3558d5cbec5e427899e7e,fastq,3033418810,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914339/SRR914339.2,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914339/SRR914339.2,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-6/SRR914339/SRR914339.2,gcp identity,gs.US,GCP,gs://sra-pub-run-6/SRR914339/SRR914339.2,public,2015-10-22 15:13:15,SRR914339,0f6fe45cf469a5948e1bc1c9f63a505b,run,446724822,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914339/SRR914339.2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,727702200,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,3,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209117,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-3-FED-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311784,GSM1169553: Celeg-2-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449536,GSM1169553,Illumina HiSeq 2000,59233837,2094108084,SRR914338,59233837,2961691850,GSM1169553,GEO Accession,GSM1169553,<NA>,GEO,<NA>,GSM1169553,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169553,<NA>,XREF_LINK,DB: gds,ID: 301169553,ILLUMINA,<NA>,<NA>,<NA>,SRS449536,<NA>,SINGLE,SAMN02209118,SRS449536,2961691850,<NA>,Caenorhabditis elegans,GSM1169553,Celeg-2-FED-RPF,6239,GSM1169553_r1,876926009,620466445,815306174,161657,648831565,GEO,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2013-06-21 16:12:03,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914338/SRR914338.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914338/SRR914338.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-6/SRR914338/SRR914338.1,gcp identity,gs.US,GCP,gs://sra-pub-run-6/SRR914338/SRR914338.1,public,2013-06-20 08:54:39,SRR914338,6af543a293d10d1fba96ccd76fd478bc,run,2094109832,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914338/SRR914338.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2961691850,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,2,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209118,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-2-FED-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311783,GSM1169552: Celeg-1-FED-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449535,GSM1169552,Illumina HiSeq 2000,30099263,1080856284,SRR914337,30099263,1504963150,GSM1169552,GEO Accession,GSM1169552,<NA>,GEO,<NA>,GSM1169552,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169552,<NA>,XREF_LINK,DB: gds,ID: 301169552,ILLUMINA,<NA>,<NA>,<NA>,SRS449535,<NA>,SINGLE,SAMN02209116,SRS449535,1504963150,<NA>,Caenorhabditis elegans,GSM1169552,Celeg-1-FED-RPF,6239,GSM1169552_r1,437435234,323426113,408129512,58131,335914160,GEO,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2013-06-21 16:12:03,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914337/SRR914337.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914337/SRR914337.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR914337/SRR914337.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR914337/SRR914337.1,public,2013-06-20 08:46:23,SRR914337,228cd7a040066de489c4f8b963e3fb51,run,1080858035,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914337/SRR914337.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1504963150,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,1,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209116,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-1-FED-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311782,GSM1169551: Celeg-3-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449534,GSM1169551,Illumina HiSeq 2000,50278819,1757277248,SRR914336,50278819,2513940950,GSM1169551,GEO Accession,GSM1169551,<NA>,GEO,<NA>,GSM1169551,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169551,<NA>,XREF_LINK,DB: gds,ID: 301169551,ILLUMINA,<NA>,<NA>,<NA>,SRS449534,<NA>,SINGLE,SAMN02209115,SRS449534,2513940950,<NA>,Caenorhabditis elegans,GSM1169551,Celeg-3-ST-RPF,6239,GSM1169551_r1,728994069,528764298,677805498,142790,578234295,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2013-06-21 16:12:03,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-10/SRR914336/R63-L2-P6-CACTGT-Sequences_merged.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-10/SRR914336/R63-L2-P6-CACTGT-Sequences_merged.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-25 08:30:04,<NA>,fc2435ed94c5d38e7bcbb0320d908ad5,fastq,1735022610,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914336/SRR914336.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914336/SRR914336.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-7/SRR914336/SRR914336.1,gcp identity,gs.US,GCP,gs://sra-pub-run-7/SRR914336/SRR914336.1,public,2013-06-20 09:10:45,SRR914336,8a494e99b7c492c6cfdf0548365f8091,run,1757278994,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914336/SRR914336.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2513940950,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,3,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209115,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-3-ST-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311781,GSM1169550: Celeg-2-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449533,GSM1169550,Illumina HiSeq 2000,20851539,453779681,SRR914335,20851539,750655404,GSM1169550,GEO Accession,GSM1169550,<NA>,GEO,<NA>,GSM1169550,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169550,<NA>,XREF_LINK,DB: gds,ID: 301169550,ILLUMINA,<NA>,<NA>,<NA>,SRS449533,<NA>,SINGLE,SAMN02209128,SRS449533,750655404,<NA>,Caenorhabditis elegans,GSM1169550,Celeg-2-ST-RPF,6239,GSM1169550_r1,204267796,139589333,202211009,27387,204559879,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-07-22 17:03:37,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR914335/120223_BRISCOE_0086_BD0PE4ACXX_L2_ATTGGC_pf.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR914335/120223_BRISCOE_0086_BD0PE4ACXX_L2_ATTGGC_pf.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-23 17:10:15,<NA>,55c7c95acdb366b2905ed1b4498787e9,fastq,536164456,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914335/SRR914335.2,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914335/SRR914335.2,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR914335/SRR914335.2,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR914335/SRR914335.2,public,2015-10-22 15:14:59,SRR914335,e7622c42ca0227058bd85c7812a94ad3,run,453781426,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914335/SRR914335.2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,750655404,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,2,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209128,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-2-ST-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311780,GSM1169549: Celeg-1-ST-RPF; Caenorhabditis elegans; OTHER,6239,Caenorhabditis elegans,OTHER,TRANSCRIPTOMIC,other,SRS449532,GSM1169549,Illumina HiSeq 2000,46096938,1610654289,SRR914334,46096938,2304846900,GSM1169549,GEO Accession,GSM1169549,<NA>,GEO,<NA>,GSM1169549,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169549,<NA>,XREF_LINK,DB: gds,ID: 301169549,ILLUMINA,<NA>,<NA>,<NA>,SRS449532,<NA>,SINGLE,SAMN02209113,SRS449532,2304846900,<NA>,Caenorhabditis elegans,GSM1169549,Celeg-1-ST-RPF,6239,GSM1169549_r1,685828992,486534030,634967175,100489,497416214,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2013-06-21 16:12:03,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR914334/R63-L5-P1-CGTGAT-Sequences.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR914334/R63-L5-P1-CGTGAT-Sequences.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-25 08:29:24,<NA>,a2054f99ffb297dda2eee68591f12e3c,fastq,1641542868,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914334/SRR914334.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914334/SRR914334.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR914334/SRR914334.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR914334/SRR914334.1,public,2013-06-20 09:11:15,SRR914334,ff86497014e0b8f81e0b4bf2d464320b,run,1610656034,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914334/SRR914334.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2304846900,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,1,strain,N2,rna subtype,ribosome protected fragments,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209113,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-1-ST-RPF,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311779,GSM1169548: Celeg-3-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449531,GSM1169548,Illumina HiSeq 2000,27043901,943922301,SRR914333,27043901,1352195050,GSM1169548,GEO Accession,GSM1169548,<NA>,GEO,<NA>,GSM1169548,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169548,<NA>,XREF_LINK,DB: gds,ID: 301169548,ILLUMINA,<NA>,<NA>,<NA>,SRS449531,<NA>,SINGLE,SAMN02209111,SRS449531,1352195050,<NA>,Caenorhabditis elegans,GSM1169548,Celeg-3-FED-mRNA,6239,GSM1169548_r1,435961986,305273380,343089574,64210,267805900,GEO,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2013-06-21 16:12:03,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914333/SRR914333.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914333/SRR914333.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-7/SRR914333/SRR914333.1,gcp identity,gs.US,GCP,gs://sra-pub-run-7/SRR914333/SRR914333.1,public,2013-06-20 08:41:49,SRR914333,c8127fca53f0e638e0c55293999990c9,run,943924052,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914333/SRR914333.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1352195050,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,3,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209111,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-3-FED-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311778,GSM1169547: Celeg-2-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449530,GSM1169547,Illumina HiSeq 2000,15243931,541870283,SRR914332,15243931,762196550,GSM1169547,GEO Accession,GSM1169547,<NA>,GEO,<NA>,GSM1169547,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169547,<NA>,XREF_LINK,DB: gds,ID: 301169547,ILLUMINA,<NA>,<NA>,<NA>,SRS449530,<NA>,SINGLE,SAMN02209114,SRS449530,762196550,<NA>,Caenorhabditis elegans,GSM1169547,Celeg-2-FED-mRNA,6239,GSM1169547_r1,257860440,167904092,189081774,1382011,145968233,GEO,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2013-06-21 16:12:03,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914332/SRR914332.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914332/SRR914332.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-6/SRR914332/SRR914332.1,gcp identity,gs.US,GCP,gs://sra-pub-run-6/SRR914332/SRR914332.1,public,2013-06-20 08:39:46,SRR914332,83dd0290087a971630f794e54d6f3954,run,541872028,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914332/SRR914332.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,762196550,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,2,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209114,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-2-FED-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311777,GSM1169546: Celeg-1-FED-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449529,GSM1169546,Illumina HiSeq 2000,14429547,515974302,SRR914331,14429547,721477350,GSM1169546,GEO Accession,GSM1169546,<NA>,GEO,<NA>,GSM1169546,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169546,<NA>,XREF_LINK,DB: gds,ID: 301169546,ILLUMINA,<NA>,<NA>,<NA>,SRS449529,<NA>,SINGLE,SAMN02209109,SRS449529,721477350,<NA>,Caenorhabditis elegans,GSM1169546,Celeg-1-FED-mRNA,6239,GSM1169546_r1,239948923,155621308,184391141,1304955,140211023,GEO,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2013-06-21 16:12:03,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914331/SRR914331.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914331/SRR914331.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR914331/SRR914331.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR914331/SRR914331.1,public,2013-06-20 08:36:35,SRR914331,bee20bdc58ba88343522a78a270e6508,run,515976049,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914331/SRR914331.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,721477350,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 fed 3 hours,batch,1,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209109,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-1-FED-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311776,GSM1169545: Celeg-3-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449528,GSM1169545,Illumina HiSeq 2000,23438522,822960576,SRR914330,23438522,1171926100,GSM1169545,GEO Accession,GSM1169545,<NA>,GEO,<NA>,GSM1169545,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169545,<NA>,XREF_LINK,DB: gds,ID: 301169545,ILLUMINA,<NA>,<NA>,<NA>,SRS449528,<NA>,SINGLE,SAMN02209110,SRS449528,1171926100,<NA>,Caenorhabditis elegans,GSM1169545,Celeg-3-ST-mRNA,6239,GSM1169545_r1,384292936,262755964,291724712,89897,233062591,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2013-06-21 16:12:03,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-14/SRR914330/R63-L7-P4-CACTGT-Sequences.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-14/SRR914330/R63-L7-P4-CACTGT-Sequences.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-25 07:12:31,<NA>,09b04fc38f8ce8a1a8cea52797ee7eb7,fastq,959396099,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914330/SRR914330.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914330/SRR914330.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-7/SRR914330/SRR914330.1,gcp identity,gs.US,GCP,gs://sra-pub-run-7/SRR914330/SRR914330.1,public,2013-06-20 09:07:48,SRR914330,6483de6ff4d28fd538ea0a85e77c723a,run,822962326,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914330/SRR914330.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1171926100,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,3,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209110,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-3-ST-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311775,GSM1169544: Celeg-2-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449527,GSM1169544,Illumina HiSeq 2000,31547222,1401361925,SRR914329,31547222,2366041650,GSM1169544,GEO Accession,GSM1169544,<NA>,GEO,<NA>,GSM1169544,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169544,<NA>,XREF_LINK,DB: gds,ID: 301169544,ILLUMINA,<NA>,<NA>,<NA>,SRS449527,<NA>,SINGLE,SAMN02209112,SRS449527,2366041650,<NA>,Caenorhabditis elegans,GSM1169544,Celeg-2-ST-mRNA,6239,GSM1169544_r1,751090037,559629169,541834016,614482,512873946,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2013-06-21 16:12:03,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR914329/R67-L5-P1-CGTGAT-Sequences_merged.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR914329/R67-L5-P1-CGTGAT-Sequences_merged.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-24 13:09:39,<NA>,485340d750fd77474a0cdc21a9b3c7cb,fastq,1562156180,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914329/SRR914329.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914329/SRR914329.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-6/SRR914329/SRR914329.1,gcp identity,gs.US,GCP,gs://sra-pub-run-6/SRR914329/SRR914329.1,public,2013-06-20 09:06:06,SRR914329,98d32d71fbc6cf4ecf0c29a0783f6863,run,1401363675,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914329/SRR914329.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,2366041650,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,2,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209112,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-2-ST-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP026198,SRX311774,GSM1169543: Celeg-1-ST-mRNA; Caenorhabditis elegans; RNA-Seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,cDNA,SRS449591,GSM1169543,Illumina HiSeq 2000,19452670,696539703,SRR914328,19452670,972633500,GSM1169543,GEO Accession,GSM1169543,<NA>,GEO,<NA>,GSM1169543,\"Total mRNA was isolated using Ambion's micro-poly(A) purist kit, fragmented by alkali and heat, followed by library preparation. Ribosome profiling was carried out as described in Ingolia et al (2009) with modifications as Stadler and Fire (2011). Libraries were constructed using the circligase protocol as described in Ingolia et al. (2009) with modifications described in Stadler and Fire (2013).\",<NA>,URL_LINK,LABEL: GEO Sample,URL: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1169543,<NA>,XREF_LINK,DB: gds,ID: 301169543,ILLUMINA,<NA>,<NA>,<NA>,SRS449591,<NA>,SINGLE,SAMN02209160,SRS449591,972633500,<NA>,Caenorhabditis elegans,GSM1169543,Celeg-1-ST-mRNA,6239,GSM1169543_r1,323752472,208936436,243562009,37625,196344958,GEO,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2013-06-21 16:12:03,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-13/SRR914328/R63-L1-P1-CGTGAT-Sequences.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-13/SRR914328/R63-L1-P1-CGTGAT-Sequences.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-05-23 17:15:29,<NA>,a20ad51bcab81af751cc739fd6e106c7,fastq,847764171,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR914328/SRR914328.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914328/SRR914328.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR914328/SRR914328.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR914328/SRR914328.1,public,2013-06-20 09:03:53,SRR914328,a24773c73c8e4d81e24b0be737e3d07a,run,696541450,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR914328/SRR914328.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,972633500,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,source_name,population-whole animal,developmental stage,L1 diapause,batch,1,strain,N2,rna subtype,total mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,GEO,SAMN02209160,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Celeg-1-ST-mRNA,GSE48140,<NA>,<NA>,GEO,GSE48140,PRJNA208993,BioProject,XREF_LINK,DB: pubmed,ID: 24098135,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition Overall design: mRNA-seq and Ribo-seq,mRNA and Ribosome Profiling in Four Nematode Species Traversing a Shared Developmental Transition,Other,SRA091389,GEO: GSE48140,GEO,GEO,<NA>,submission brokered by GEO,<NA>\nSRP014427,SRX160517,L1 ribosome footprints replicate 4,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,172256552,7089950470,SRR522897,172256552,9990880016,L1 ribosome footprints replicate 4,<NA>,<NA>,1,Stanford University,<NA>,<NA>,<NA>,MS-63,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS350385,58,SINGLE,SAMN01090422,SRS350385,9990880016,<NA>,Caenorhabditis elegans,C. elegans,Caenorhabditis elegans,6239,L1 ribosome footprints replicate 4,2742011224,2329571991,2626922712,62722476,2229651613,Stanford University,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2015-07-22 17:07:48,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522897/SRR522897.2,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522897/SRR522897.2,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR522897/SRR522897.2,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR522897/SRR522897.2,public,2015-12-07 05:01:00,SRR522897,7e87ba9273ef0bdc84f2cad8410b36f1,run,7089952215,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522897/SRR522897.2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,9990880016,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,SAMN01090422,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Caenorhabditis elegans,PRJNA170771,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA170771,BioProject,<NA>,<NA>,<NA>,Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets,Caenorhabditis elegans ribosome profiling of miRNA targets,Other,SRA055804,Stadler_Fire_2012,<NA>,Stanford University,Andrew Fire,NA,2012-07-10T15:00:00Z\nSRP014427,SRX160513,L2 ribosome footprints replicate 2 (seq-replicate),6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,160368455,6099790048,SRR522895,160368455,9301370390,L2 ribosome footprints replicate 2 (seq-replicate),<NA>,<NA>,1,Stanford University,<NA>,<NA>,<NA>,MS-65,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS350385,58,SINGLE,SAMN01090422,SRS350385,9301370390,<NA>,Caenorhabditis elegans,C. elegans,Caenorhabditis elegans,6239,L2 ribosome footprints replicate 2 (seq-replicate),4395868552,1355230557,1585499480,58020711,1906751090,Stanford University,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2015-07-22 17:07:48,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-11/SRR522895/s_7_all.fastq.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR522895/s_7_all.fastq.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-06-10 00:30:40,<NA>,d806388a3edc097ad0fecf5eb1fc18ef,fastq,6540149063,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522895/SRR522895.2,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522895/SRR522895.2,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-4/SRR522895/SRR522895.2,gcp identity,gs.US,GCP,gs://sra-pub-run-4/SRR522895/SRR522895.2,public,2015-12-07 04:27:24,SRR522895,dd6fb591e96742c30c76181738c16f4e,run,6099791796,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522895/SRR522895.2,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,9301370390,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,SAMN01090422,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Caenorhabditis elegans,PRJNA170771,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA170771,BioProject,<NA>,<NA>,<NA>,Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets,Caenorhabditis elegans ribosome profiling of miRNA targets,Other,SRA055804,Stadler_Fire_2012,<NA>,Stanford University,Andrew Fire,NA,2012-07-10T15:00:00Z\nSRP014427,SRX160518,L4 ribosome footprints replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,174693758,7204894135,SRR522883,174693758,10132237964,L4 ribosome footprints replicate 1,<NA>,<NA>,1,Stanford University,<NA>,<NA>,<NA>,MS-61,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS350385,58,SINGLE,SAMN01090422,SRS350385,10132237964,<NA>,Caenorhabditis elegans,C. elegans,Caenorhabditis elegans,6239,L4 ribosome footprints replicate 1,2899435466,2230705525,2619710238,56903562,2325483173,Stanford University,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2015-07-22 17:07:44,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-5/SRR522883/SRR522883.2,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-6/SRR522883/SRR522883.2,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-3/SRR522883/SRR522883.2,gcp identity,gs.US,GCP,gs://sra-pub-run-3/SRR522883/SRR522883.2,public,2015-11-27 11:25:57,SRR522883,bf1692c0354cfc5e1bd3ee9590529240,run,7204895879,1,Primary 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Delivery,-,GCP,gs://sra-pub-src-11/SRR522011/R63-L2-P3-GCCTAA-Sequences.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-11/SRR522011/R63-L2-P3-GCCTAA-Sequences.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-06-07 10:13:31,<NA>,f83d24dce6e7af8275724880c822ce27,fastq,1101202901,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522011/SRR522011.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522011/SRR522011.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR522011/SRR522011.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR522011/SRR522011.1,public,2012-07-16 19:45:48,SRR522011,836ffe1bbcb202840f032c3c092f061f,run,945138269,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522011/SRR522011.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,1352195050,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,SAMN01090422,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Caenorhabditis elegans,PRJNA170771,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA170771,BioProject,<NA>,<NA>,<NA>,Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets,Caenorhabditis elegans ribosome profiling of miRNA targets,Other,SRA055804,Stadler_Fire_2012,<NA>,Stanford University,Andrew Fire,NA,2012-07-10T15:00:00Z\nSRP014427,SRX160148,L1 replicate 2 mRNA-seq,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,15243931,542413430,SRR522010,15243931,762196550,Celeg_2_FED_mRNA,<NA>,<NA>,1,Stanford University,<NA>,<NA>,<NA>,Celeg_2_FED_mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS350385,50,SINGLE,SAMN01090422,SRS350385,762196550,<NA>,Caenorhabditis elegans,C. elegans,Caenorhabditis elegans,6239,Celeg_2_FED_mRNA,257860440,167904092,189081774,1382011,145968233,Stanford University,run,gs.US,gs,run,s3.us-east-1,s3,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,<NA>,true,true,2012-07-18 00:00:00,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522010/SRR522010.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522010/SRR522010.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR522010/SRR522010.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR522010/SRR522010.1,public,2012-07-16 18:49:18,SRR522010,0c907f640bd5b9afb2aa33662a599837,run,542415177,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522010/SRR522010.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,762196550,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,SAMN01090422,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Caenorhabditis elegans,PRJNA170771,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA170771,BioProject,<NA>,<NA>,<NA>,Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets,Caenorhabditis elegans ribosome profiling of miRNA targets,Other,SRA055804,Stadler_Fire_2012,<NA>,Stanford University,Andrew Fire,NA,2012-07-10T15:00:00Z\nSRP014427,SRX160147,L1 mRNA-seq replicate 1,6239,Caenorhabditis elegans,RNA-Seq,TRANSCRIPTOMIC,unspecified,SRS350385,C. elegans,Illumina HiSeq 2000,14429547,516477040,SRR522009,14429547,721477350,L1_FED_1_mRNA,<NA>,<NA>,1,Stanford University,<NA>,<NA>,<NA>,Celeg_FED_1_mRNA,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,ILLUMINA,Application Read,0,Forward,SRS350385,50,SINGLE,SAMN01090422,SRS350385,721477350,<NA>,Caenorhabditis elegans,C. elegans,Caenorhabditis elegans,6239,Celeg_1_FED_mRNA,239948923,155621308,184391141,1304955,140211023,Stanford University,fastq,gs.US,gs,fastq,s3.us-east-1,s3,run,gs.US,gs,run,s3.us-east-1,s3,public,<NA>,true,true,2012-07-24 18:22:22,Use Cloud Data Delivery,-,GCP,gs://sra-pub-src-9/SRR522009/R63-L3-P3-ACATCG-Sequences.txt.gz,Use Cloud Data Delivery,-,AWS,s3://sra-pub-src-9/SRR522009/R63-L3-P3-ACATCG-Sequences.txt.gz,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,public,2020-06-09 06:05:26,<NA>,eafcd43edebc8929eb80025d386b4049,fastq,612472957,0,Original,<NA>,anonymous,worldwide,NCBI,https://sra-downloadb.be-md.ncbi.nlm.nih.gov/sos1/sra-pub-run-2/SRR522009/SRR522009.1,anonymous,worldwide,NCBI,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522009/SRR522009.1,aws identity,s3.us-east-1,AWS,s3://sra-pub-run-5/SRR522009/SRR522009.1,gcp identity,gs.US,GCP,gs://sra-pub-run-5/SRR522009/SRR522009.1,public,2012-07-24 18:21:47,SRR522009,6c5960720cf3667250c78c77086773ff,run,516478781,1,Primary ETL,https://sra-downloadb.st-va.ncbi.nlm.nih.gov/sos2/sra-pub-run-4/SRR522009/SRR522009.1,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,1,721477350,false,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,Stanford University,SAMN01090422,BioSample,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,<NA>,6239,Caenorhabditis elegans,PRJNA170771,<NA>,<NA>,BioProject,Caenorhabditis elegans strain:N2,PRJNA170771,BioProject,<NA>,<NA>,<NA>,Ribosome profiling and mRNA-seq of C. elegans larvae to investigate regulation of miRNA targets,Caenorhabditis elegans ribosome profiling of miRNA targets,Other,SRA055804,Stadler_Fire_2012,<NA>,Stanford University,Andrew Fire,NA,2012-07-10T15:00:00Z\n"
  },
  {
    "path": "tests/data/test_search/sra_uids.txt",
    "content": "155791\n155790\n"
  },
  {
    "path": "tests/test_geoweb.py",
    "content": "\"\"\"Tests for GEOweb\"\"\"\n\nimport os\nimport time\n\nimport pandas as pd\nimport pytest\n\nfrom pysradb.geoweb import GEOweb\n\n\n@pytest.fixture(scope=\"module\")\ndef geoweb_connection():\n    client = GEOweb()\n    time.sleep(2)\n    return client\n\n\ndef test_valid_download_links(geoweb_connection):\n    \"\"\"Test if all links for a project are scraped\"\"\"\n    links, url = geoweb_connection.get_download_links(\"GSE161707\")\n    assert links == [\"GSE161707_RAW.tar\", \"filelist.txt\"]\n\n\ndef test_invalid_download_links(geoweb_connection):\n    \"\"\"Test if invalid GEO ID raises the expected error\"\"\"\n    with pytest.raises(KeyError):\n        links, url = geoweb_connection.get_download_links(\"GSE1691709\")\n\n\ndef test_file_download(geoweb_connection):\n    \"\"\"Test if file actually gets downloaded\"\"\"\n    geoweb_connection.download(\n        links=[\"GSE161707_RAW.tar\", \"filelist.txt\"],\n        root_url=\"https://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161707/suppl/\",\n        gse=\"GSE161707\",\n        out_dir=\"geoweb_downloads\",\n    )\n    assert os.path.getsize(\"geoweb_downloads/GSE161707/GSE161707_RAW.tar\")\n    assert os.path.getsize(\"geoweb_downloads/GSE161707/GSE161707_filelist.txt\")\n"
  },
  {
    "path": "tests/test_search.py",
    "content": "\"\"\"Tests for search.py\"\"\"\n\nimport json\n\nimport pandas as pd\nimport pytest\n\nfrom pysradb.search import *\n\n# =========================== pytest fixtures ============================\n# pytest fixtures containing simulated input/outputs for various functions\n# used in the search module\n\n# Search inputs are packaged in lists in the following formats so that they\n# can be passed to test functions easily:\n# Format for Sra/Ena: [verbosity, return_max, query, accession, organism,\n# layout, mbases, publication_date, platform, selection, source, strategy,\n# title, suppress_validations]\n# Format for Geo: [verbosity, return_max, query, accession, organism,\n# layout, mbases, publication_date, platform, selection, source, strategy,\n# title, geo_query, geo_dataset_type, geo_entry_type, suppress_validations]\n\n\n@pytest.fixture(scope=\"module\")\ndef valid_search_inputs_1():\n    \"\"\"Basic search input tests for Sra and Ena (single inputs)\"\"\"\n    return [\n        [\n            0,\n            20,\n            [\"covid-19\"],\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # verbosity\n        [\n            3,\n            20,\n            [\"covid-19\"],\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # query\n        [\n            2,\n            20,\n            None,\n            \"SRS6898940\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # accession\n        [\n            2,\n            20,\n            None,\n            None,\n            \"Escherichia coli\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # organism\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            \"PAIRED\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # layout\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            5,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # mbases\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"01-01-2019:31-12-2019\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # pdat\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"ion torrent\",\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # platform\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"random\",\n            None,\n            None,\n            None,\n            False,\n        ],  # selection\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"genomic\",\n            None,\n            None,\n            False,\n        ],  # source\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"wgs\",\n            None,\n            False,\n        ],  # strategy\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"Homo sapiens; RNA-Seq\",\n            False,\n        ],  # title\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef valid_search_inputs_2():\n    \"\"\"More complex input tests for Sra and Ena\"\"\"\n    return [\n        [\n            0,\n            20,\n            None,\n            None,\n            None,\n            \"Triple\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            True,\n        ],  # suppress_validation\n        [\n            2,\n            20,\n            [\"Escherichia\", \"coli\"],\n            \"SRS6898222\",\n            \"Escherichia coli\",\n            \"paired\",\n            6,\n            \"01-01-1999:31-12-2019\",\n            \"ILLUMINA\",\n            \"dnase\",\n            \"metatranscriptomic\",\n            \"mbd seq\",\n            None,\n            False,\n        ],\n        [\n            1,\n            2,\n            [],\n            None,\n            None,\n            \"single\",\n            \"5\",\n            \"31-12-2019\",\n            \"Nanopore\",\n            \"MBD2 protein methyl-CpG binding domain\",\n            \"genomic single cell\",\n            \"amplicon selection\",\n            None,\n            False,\n        ],\n        [\n            0,\n            200000,\n            None,\n            None,\n            None,\n            \"Paired\",\n            None,\n            None,\n            \"complete genomics\",\n            \"Inverse rRNA\",\n            \"TRANSCRIPTOMIC\",\n            \"hi-c\",\n            None,\n            False,\n        ],\n        [\n            3,\n            1,\n            None,\n            None,\n            None,\n            \"SINGLE\",\n            None,\n            None,\n            \"ls454\",\n            \"oligo-dt\",\n            \"transcriptomic single-cell\",\n            \"miRNA\",\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"smrt\",\n            \"cDNA_oligo_dT\",\n            \"metagenomic\",\n            \"MBD\",\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"Pacbio\",\n            \"pcr\",\n            \"others\",\n            \"EST\",\n            None,\n            False,\n        ],\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef valid_search_inputs_geo():\n    \"\"\"Basic search input tests for Geo\"\"\"\n    return [\n        [\n            2,\n            20,\n            \"query\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"GEO query\",\n            None,\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            [\"query\"],\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"GEO query\",\n            None,\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            None,\n            \"SRS6898940\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"GEO query\",\n            None,\n            None,\n            False,\n        ],\n        [\n            2,\n            20,\n            None,\n            None,\n            \"Escherichia coli\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # organism\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"01-01-2019:31-12-2019\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # pdat\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"GEO dataset type\",\n            None,\n            False,\n        ],  # Geo dataset type\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"GEO entry type\",\n            False,\n        ],\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef empty_search_inputs():\n    return [\n        [],\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],\n        [2, 20, [], [], [], [], [], [], [], [], [], [], []],\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef empty_search_inputs_geo():\n    return [\n        [],\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],\n        [2, 20, [], [], [], [], [], [], [], [], [], [], []],\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef invalid_search_inputs():\n    \"\"\"Invalid search input tests for QuerySearch\"\"\"\n    return [\n        [\n            4,\n            20,\n            [\"covid-19\"],\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # verbosity\n        [\n            3,\n            0,\n            [\"covid-19\"],\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # return_max\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            \"X\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # layout\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            \"Charmander\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # mbases\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            -1,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # mbases\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"31-31-2019\",\n            None,\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # pdat\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"pacbio nanopore\",\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # platform\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"no such platform\",\n            None,\n            None,\n            None,\n            None,\n            False,\n        ],  # platform\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"polyA hybrid\",\n            None,\n            None,\n            None,\n            False,\n        ],  # selection\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"no such selection\",\n            None,\n            None,\n            None,\n            False,\n        ],  # selection\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"genomic transcriptomic\",\n            None,\n            None,\n            False,\n        ],  # source\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"metagenomic viral rna \",\n            None,\n            None,\n            False,\n        ],  # source\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"wgs wga\",\n            None,\n            False,\n        ],  # strategy\n        [\n            2,\n            20,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            None,\n            \"Bulbasaur\",\n            None,\n            False,\n        ],  # strategy\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef sra_response_xml_1():\n    return \"./tests/data/test_search/sra_test.xml\"\n\n\n@pytest.fixture(scope=\"module\")\ndef sra_formatted_responses_1():\n    return [\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_verbosity_0.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_verbosity_1.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_verbosity_2.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_verbosity_3.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef sra_response_xml_2():\n    return \"./tests/data/test_search/sra_test_ERS3331676.xml\"\n\n\n@pytest.fixture(scope=\"module\")\ndef sra_formatted_responses_2():\n    return [\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_2_verbosity_0.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_2_verbosity_1.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_2_verbosity_2.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/sra_test_2_verbosity_3.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n    ]\n\n\n@pytest.fixture(scope=\"module\")\ndef sra_uids():\n    with open(\"./tests/data/test_search/sra_uids.txt\", \"r\") as f:\n        uids = f.read().splitlines()\n    return uids\n\n\n@pytest.fixture(scope=\"module\")\ndef ena_responses_json():\n    data = []\n    for i in range(4):\n        with open(f\"./tests/data/test_search/ena_test_verbosity_{i}.json\") as f:\n            data.append(json.load(f))\n    return data\n\n\n@pytest.fixture(scope=\"module\")\ndef ena_formatted_responses():\n    return [\n        pd.read_csv(\n            \"./tests/data/test_search/ena_test_verbosity_0.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/ena_test_verbosity_1.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/ena_test_verbosity_2.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n        pd.read_csv(\n            \"./tests/data/test_search/ena_test_verbosity_3.csv\",\n            dtype=object,\n            keep_default_na=False,\n        ),\n    ]\n\n\n# ============================= General Tests =============================\n\n\ndef missing_query_test(empty_search_inputs):\n    for empty_search_input in empty_search_inputs:\n        with pytest.raises(MissingQueryException):\n            QuerySearch(*empty_search_input)\n\n\ndef test_invalid_search_query(invalid_search_inputs):\n    error_messages = [\n        \"Incorrect verbosity format\",\n        \"Incorrect return_max format\",\n        \"Incorrect layout field format\",\n        \"Incorrect mbases format\",\n        \"Incorrect mbases format\",\n        \"Incorrect publication date format\",\n        \"Multiple potential matches have been identified for pacbio nanopore\",\n        \"Incorrect platform\",\n        \"Multiple potential matches have been identified for polyA hybrid\",\n        \"Incorrect selection\",\n        \"Incorrect source\",\n        \"Multiple potential matches have been identified for metagenomic viral rna\",\n        \"Multiple potential matches have been identified for wgs wga\",\n        \"Incorrect strategy\",\n    ]\n    for i in range(len(invalid_search_inputs)):\n        with pytest.raises(IncorrectFieldException) as e:\n            QuerySearch(*invalid_search_inputs[i])\n        assert error_messages[i] in str(e.value)\n\n\n# ======================== SraSearch component tests ======================\n\n\ndef test_sra_search_1():\n    instance = SraSearch(\n        3, 1000, query=\"ribosome profiling\", publication_date=\"01-10-2012:01-01-2013\"\n    )\n    instance.search()\n    found_accessions = set(instance.get_df()[\"experiment_accession\"])\n    with open(\"./tests/data/test_search/sra_search_test1.txt\", \"r\") as f:\n        expected_accessions = f.read().splitlines()\n    assert found_accessions == set(expected_accessions)\n\n\ndef test_sra_uids(sra_uids):\n    instance = SraSearch(\n        3, 1000, query=\"ribosome profiling\", publication_date=\"01-10-2012:01-01-2013\"\n    )\n    instance.search()\n    assert instance.get_uids() == sra_uids\n\n\ndef test_valid_search_query_1_sra(valid_search_inputs_1):\n    expected_query = [\n        \"covid-19\",\n        \"covid-19\",\n        \"SRS6898940[Accession]\",\n        \"Escherichia coli[Organism]\",\n        \"PAIRED[Layout]\",\n        \"5[Mbases]\",\n        \"2019/01/01:2019/12/31[PDAT]\",\n        \"ION_TORRENT[Platform]\",\n        \"RANDOM[Selection]\",\n        \"GENOMIC[Source]\",\n        \"WGS[Strategy]\",\n        \"Homo sapiens; RNA-Seq[Title]\",\n    ]\n    for i in range(len(valid_search_inputs_1)):\n        assert (\n            SraSearch(*valid_search_inputs_1[i])._format_query_string()\n            == expected_query[i]\n        )\n\n\ndef test_valid_search_query_2_sra(valid_search_inputs_2):\n    expected_query = [\n        \"Triple[Layout]\",\n        \"Escherichia coli AND SRS6898222[Accession] AND Escherichia coli[Organism] AND paired[Layout] AND \"\n        \"6[Mbases] AND 1999/01/01:2019/12/31[PDAT] AND ILLUMINA[Platform] AND DNase[Selection] AND \"\n        \"METATRANSCRIPTOMIC[Source] AND MBD-Seq[Strategy]\",\n        \"single[Layout] AND 5[Mbases] AND 2019/12/31[PDAT] AND OXFORD_NANOPORE[Platform] AND \"\n        \"MBD2 protein methyl-CpG binding domain[Selection] AND GENOMIC SINGLE CELL[Source] AND AMPLICON[Strategy]\",\n        \"Paired[Layout] AND COMPLETE_GENOMICS[Platform] AND Inverse rRNA[Selection] AND TRANSCRIPTOMIC[Source] AND \"\n        \"Hi-C[Strategy]\",\n        \"SINGLE[Layout] AND LS454[Platform] AND Oligo-dT[Selection] AND TRANSCRIPTOMIC SINGLE CELL[Source] AND \"\n        \"miRNA-Seq[Strategy]\",\n        \"PACBIO_SMRT[Platform] AND cDNA_oligo_dT.*[Selection] AND METAGENOMIC[Source] AND MBD-Seq[Strategy]\",\n        \"PACBIO_SMRT[Platform] AND PCR[Selection] AND OTHER[Source] AND EST[Strategy]\",\n    ]\n    for i in range(len(valid_search_inputs_2)):\n        assert (\n            SraSearch(*valid_search_inputs_2[i])._format_query_string()\n            == expected_query[i]\n        )\n\n\ndef test_sra_search_format_request():\n    assert SraSearch(\n        0,\n        1000,\n        query=\"covid-19\",\n    )._format_request() == {\n        \"db\": \"sra\",\n        \"term\": \"covid-19\",\n        \"retmode\": \"json\",\n        \"retmax\": 1000,\n    }\n\n\ndef test_sra_search_format_result_1(sra_response_xml_1, sra_formatted_responses_1):\n    for i in range(2, 4):\n        query = SraSearch(\n            i,\n            1000,\n            query=\"ribosome profiling\",\n            platform=\"illumina\",\n            organism=\"Caenorhabditis elegans\",\n        )\n        query._format_response(sra_response_xml_1)\n        query._format_result()\n        col0 = [\n            c\n            for c in query.get_df().columns\n            if (\"run\" not in c.lower() and \"sample\" not in c.lower())\n        ]\n        col1 = [\n            c\n            for c in sra_formatted_responses_1[i].columns\n            if (\"run\" not in c.lower() and \"sample\" not in c.lower())\n        ]\n        expected_df = (\n            sra_formatted_responses_1[i][col1].fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        )\n        actual_df = query.get_df()[col0].fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        pd.testing.assert_frame_equal(expected_df, actual_df, check_dtype=False)\n\n\ndef test_sra_search_format_result_2(sra_response_xml_2, sra_formatted_responses_2):\n    for i in range(4):\n        query = SraSearch(i, 1000, accession=\"ERS3331676\")\n\n        query._format_response(sra_response_xml_2)\n        query._format_result()\n        col0 = [\n            c\n            for c in query.get_df().columns\n            if (\"run\" not in c.lower() and \"sample\" not in c.lower())\n        ]\n        col1 = [\n            c\n            for c in sra_formatted_responses_2[i].columns\n            if (\"run\" not in c.lower() and \"sample\" not in c.lower())\n        ]\n        expected_df = (\n            sra_formatted_responses_2[i][col1].fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        )\n        actual_df = query.get_df()[col0].fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        pd.testing.assert_frame_equal(expected_df, actual_df, check_dtype=False)\n\n\n# ====================== EnaSearch component tests ========================\n\n\ndef _test_ena_search_1():\n    instance = EnaSearch(\n        0, 1000, platform=\"pacbio\", publication_date=\"01-10-2012:01-01-2013\"\n    )\n    instance.search()\n    df = instance.get_df()[\"run_accession\"].to_list()\n    with open(\"./tests/data/test_search/ena_search_test1.txt\", \"r\") as f:\n        expected_accessions = f.read().splitlines()\n    for accession in df:\n        assert accession in expected_accessions\n\n\ndef _test_ena_search_2(capsys):\n    EnaSearch(0, 1000, query=\"hehehuhuhaha\").search()\n    out, err = capsys.readouterr()\n    assert \"No results found for the following search query:\" in out\n    assert err == \"\"\n\n\ndef _test_ena_search_3(capsys):\n    with pytest.raises(SystemExit) as e:\n        EnaSearch(0, 1000, selection='\"Pikachu', suppress_validation=True).search()\n    assert \"HTTPError: This is likely caused by an invalid search query:\" in str(\n        e.value\n    )\n\n\ndef _test_valid_search_query_1_ena(valid_search_inputs_1):\n    expected_query = [\n        '(experiment_title=\"*covid-19*\" OR study_accession=\"COVID-19\" OR secondary_study_accession=\"COVID-19\" OR'\n        ' sample_accession=\"COVID-19\" OR secondary_sample_accession=\"COVID-19\" OR experiment_accession=\"COVID-19\" OR'\n        ' submission_accession=\"COVID-19\" OR run_accession=\"COVID-19\")',\n        '(experiment_title=\"*covid-19*\" OR study_accession=\"COVID-19\" OR secondary_study_accession=\"COVID-19\" OR'\n        ' sample_accession=\"COVID-19\" OR secondary_sample_accession=\"COVID-19\" OR experiment_accession=\"COVID-19\" OR'\n        ' submission_accession=\"COVID-19\" OR run_accession=\"COVID-19\")',\n        '(study_accession=\"SRS6898940\" OR secondary_study_accession=\"SRS6898940\" OR sample_accession=\"SRS6898940\" OR'\n        ' secondary_sample_accession=\"SRS6898940\" OR experiment_accession=\"SRS6898940\" OR'\n        ' submission_accession=\"SRS6898940\" OR run_accession=\"SRS6898940\")',\n        \"tax_eq(562)\",\n        'library_layout=\"PAIRED\"',\n        \"base_count>=4500000 AND base_count<5500000\",\n        \"first_created>=2019-01-01 AND first_created<=2019-12-31\",\n        'instrument_platform=\"ION_TORRENT\"',\n        'library_selection=\"RANDOM\"',\n        'library_source=\"GENOMIC\"',\n        'library_strategy=\"WGS\"',\n        'experiment_title=\"*Homo sapiens; RNA-Seq*\"',\n    ]\n    for i in range(len(valid_search_inputs_1)):\n        assert (\n            EnaSearch(*valid_search_inputs_1[i])._format_query_string()\n            == expected_query[i]\n        )\n\n\ndef _test_valid_search_query_2_ena(valid_search_inputs_2):\n    expected_query = [\n        'library_layout=\"TRIPLE\"',\n        '(experiment_title=\"*Escherichia coli*\") AND (study_accession=\"SRS6898222\" OR '\n        'secondary_study_accession=\"SRS6898222\" OR sample_accession=\"SRS6898222\" OR '\n        'secondary_sample_accession=\"SRS6898222\" OR experiment_accession=\"SRS6898222\" OR '\n        'submission_accession=\"SRS6898222\" OR run_accession=\"SRS6898222\") AND tax_eq(562) AND library_layout=\"PAIRED\" '\n        \"AND base_count>=5500000 AND base_count<6500000 AND first_created>=1999-01-01 AND \"\n        'first_created<=2019-12-31 AND instrument_platform=\"ILLUMINA\" AND library_selection=\"DNase\" AND '\n        'library_source=\"METATRANSCRIPTOMIC\" AND library_strategy=\"MBD-Seq\"',\n        'library_layout=\"SINGLE\" AND base_count>=4500000 AND base_count<5500000 AND first_created=2019-12-31 AND '\n        'instrument_platform=\"OXFORD_NANOPORE\" AND library_selection=\"MBD2 protein methyl-CpG binding domain\" AND '\n        'library_source=\"GENOMIC SINGLE CELL\" AND library_strategy=\"AMPLICON\"',\n        'library_layout=\"PAIRED\" AND instrument_platform=\"COMPLETE_GENOMICS\" AND library_selection=\"Inverse rRNA\" AND '\n        'library_source=\"TRANSCRIPTOMIC\" AND library_strategy=\"Hi-C\"',\n        'library_layout=\"SINGLE\" AND instrument_platform=\"LS454\" AND library_selection=\"Oligo-dT\" AND '\n        'library_source=\"TRANSCRIPTOMIC SINGLE CELL\" AND library_strategy=\"miRNA-Seq\"',\n        'instrument_platform=\"PACBIO_SMRT\" AND library_selection=\"cDNA_oligo_dT.*\" AND '\n        'library_source=\"METAGENOMIC\" AND library_strategy=\"MBD-Seq\"',\n        'instrument_platform=\"PACBIO_SMRT\" AND library_selection=\"PCR\" AND library_source=\"OTHER\" AND '\n        'library_strategy=\"EST\"',\n    ]\n\n    for i in range(len(valid_search_inputs_2)):\n        assert (\n            EnaSearch(*valid_search_inputs_2[i])._format_query_string()\n            == expected_query[i]\n        )\n\n\ndef test_ena_search_format_request():\n    query_string = (\n        '(experiment_title=\"*covid-19*\" OR study_accession=\"COVID-19\" OR '\n        'secondary_study_accession=\"COVID-19\" OR sample_accession=\"COVID-19\" OR '\n        'secondary_sample_accession=\"COVID-19\" OR experiment_accession=\"COVID-19\" OR '\n        'submission_accession=\"COVID-19\" OR run_accession=\"COVID-19\")'\n    )\n\n    assert EnaSearch(2, 20, \"covid-19\")._format_request() == {\n        \"query\": query_string,\n        \"result\": \"read_run\",\n        \"format\": \"json\",\n        \"limit\": 20,\n        \"fields\": \"study_accession,experiment_accession,experiment_title,description,tax_id,scientific_name,\"\n        \"library_strategy,library_source,library_selection,sample_accession,sample_title,\"\n        \"instrument_model,run_accession,read_count,base_count,first_public,library_layout,instrument_platform\",\n    }\n\n\ndef test_ena_search_format_result(ena_responses_json, ena_formatted_responses):\n    for i in range(4):\n        query = EnaSearch(\n            i,\n            1000,\n            query=\"ribosome profiling\",\n            platform=\"illumina\",\n            organism=\"Caenorhabditis elegans\",\n        )\n        query._format_result(ena_responses_json[i])\n        expected_df = ena_formatted_responses[i].fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        actual_df = query.get_df().fillna(\"N/A\").replace(\"<NA>\", \"N/A\")\n        pd.testing.assert_frame_equal(expected_df, actual_df, check_dtype=False)\n\n\n# ====================== GeoSearch component tests ========================\n\n\ndef missing_query_test_geo(empty_search_inputs_geo):\n    for empty_search_input in empty_search_inputs_geo:\n        with pytest.raises(MissingQueryException):\n            QuerySearch(*empty_search_input)\n\n\ndef test_geo_search_1():\n    instance = GeoSearch(3, 1000, geo_query=\"human\")\n    instance.search()\n    df = instance.get_df()\n    assert not df.empty\n\n    experiment_accessions = instance.get_df()[\"experiment_accession\"].to_list()\n    assert len(experiment_accessions) > 10\n    # with open(\"./tests/data/test_search/geo_search_test1.txt\", \"r\") as f:\n    #    expected_accessions = f.read().splitlines()\n\n    # assert len(set(expected_accessions).intersection(df)) > 1\n\n\ndef test_valid_search_query_geo(valid_search_inputs_geo):\n    expected_sra_query = [\n        \"query AND sra gds[Filter]\",\n        \"\",\n        \"query AND sra gds[Filter]\",\n        \"sra gds[Filter] AND SRS6898940[Accession]\",\n        \"sra gds[Filter] AND Escherichia coli[Organism]\",\n        \"sra gds[Filter] AND 2019/01/01:2019/12/31[PDAT]\",\n        \"\",\n        \"\",\n    ]\n    expected_geo_query = [\n        \"\",\n        \"GEO query AND gds sra[Filter]\",\n        \"GEO query AND gds sra[Filter]\",\n        \"GEO query AND gds sra[Filter]\",\n        \"gds sra[Filter] AND Escherichia coli[Organism]\",\n        \"gds sra[Filter] AND 2019/01/01:2019/12/31[PDAT]\",\n        \"gds sra[Filter] AND GEO dataset type[DataSet Type]\",\n        \"gds sra[Filter] AND GEO entry type[Entry Type]\",\n    ]\n\n    for i in range(len(valid_search_inputs_geo)):\n        instance = GeoSearch(*valid_search_inputs_geo[i])\n        assert instance._format_query_string() == expected_sra_query[i]\n        assert instance._format_geo_query_string() == expected_geo_query[i]\n\n\ndef test_geo_search_format_request():\n    assert GeoSearch(\n        0,\n        1000,\n        query=\"covid-19\",\n    )._format_request() == {\n        \"db\": \"sra\",\n        \"term\": \"covid-19 AND sra gds[Filter]\",\n        \"retmode\": \"json\",\n        \"retmax\": 1000,\n    }\n\n\ndef test_geo_info():\n    assert type(GeoSearch.info()) == str and GeoSearch.info().startswith(\n        \"General Information:\"\n    )\n"
  },
  {
    "path": "tests/test_sraweb.py",
    "content": "\"\"\"Tests for SRAweb\"\"\"\n\nimport time\n\nimport pandas as pd\nimport pytest\n\nfrom pysradb.sraweb import SRAweb\n\n\n@pytest.fixture(scope=\"module\")\ndef sraweb_connection():\n    client = SRAweb()\n    time.sleep(2)\n    return client\n\n\ndef test_sra_metadata(sraweb_connection):\n    \"\"\"Test if metadata has right number of entries\"\"\"\n    df = sraweb_connection.sra_metadata(\"SRP016501\")\n    assert df.shape[0] == 134\n\n\ndef test_sra_metadata_missing_orgname(sraweb_connection):\n    \"\"\"Test if metadata has right number of entries\"\"\"\n    df = sraweb_connection.sra_metadata(\"ERP000171\")\n    # See: https://github.com/saketkc/pysradb/issues/46#issuecomment-657268760\n    assert sum(pd.isna(df.organism_name.tolist())) > 0\n\n\ndef test_sra_metadata_multiple(sraweb_connection):\n    \"\"\"Test if metadata has right number of entries\"\"\"\n    df = sraweb_connection.sra_metadata([\"SRP016501\", \"SRP096025\", \"SRP103009\"])\n    assert list(sorted(df.study_accession.unique())) == [\n        \"SRP016501\",\n        \"SRP096025\",\n        \"SRP103009\",\n    ]\n\n\ndef test_sra_metadata_multiple_detailed(sraweb_connection):\n    \"\"\"Test if metadata has right number of entries\"\"\"\n    df = sraweb_connection.sra_metadata([\"SRP002605\", \"SRP098789\"], detailed=True)\n    columns = [\"treatment time\", \"library type\", \"transfection\", \"time\"]\n    assert len(set(columns).intersection(set(df.columns))) == 4\n    ftp_cols = [\n        \"ena_fastq_http\",\n        \"ena_fastq_http_1\",\n        \"ena_fastq_http_2\",\n        \"ena_fastq_ftp\",\n        \"ena_fastq_ftp_1\",\n        \"ena_fastq_ftp_2\",\n    ]\n    assert len(set(ftp_cols).intersection(set(df.columns))) == 6\n\n\ndef test_tissue_column(sraweb_connection):\n    \"\"\"Test if tissue column exists\"\"\"\n    df = sraweb_connection.sra_metadata(\"SRP096025\", detailed=\"True\")\n    assert list(df[\"tissue\"]) == [\"Kidney\"] * 4\n\n\ndef test_metadata_exp_accession(sraweb_connection):\n    \"\"\"Test if experiment_accession column is correct\"\"\"\n    df = sraweb_connection.sra_metadata(\"SRP103009\", detailed=\"True\")\n    assert \"SRX2705123\" in list(df[\"experiment_accession\"])\n\n\ndef test_fetch_gds_results(sraweb_connection):\n    \"\"\"Test if fetch_gds_result returns correct values\"\"\"\n    df = sraweb_connection.fetch_gds_results(\"GSE34438\")\n    assert df[\"accession\"][1] == \"GSM849112\"\n\n\ndef test_srp_to_gse(sraweb_connection):\n    \"\"\"Test if srp is converted to gse correctly\"\"\"\n    df = sraweb_connection.srp_to_gse(\"SRP009836\")\n    assert df[\"study_alias\"][0] == \"GSE34438\"\n\n\ndef test_srp_to_srr(sraweb_connection):\n    \"\"\"Test if srp is converted to srr correctly\"\"\"\n    df = sraweb_connection.srp_to_srr(\"SRP002605\", detailed=True)\n    assert df[\"run_accession\"].tolist()[:5] == [\n        \"SRR057511\",\n        \"SRR057512\",\n        \"SRR057513\",\n        \"SRR057514\",\n        \"SRR057515\",\n    ]\n\n\ndef test_srp_to_srs(sraweb_connection):\n    \"\"\"Test if srp is converted to srs correctly\"\"\"\n    df = sraweb_connection.srp_to_srs(\"SRP014542\")\n    assert sorted(list(df[\"sample_accession\"])) == [\n        \"SRS351513\",\n        \"SRS351514\",\n        \"SRS351515\",\n        \"SRS351516\",\n        \"SRS351517\",\n        \"SRS351518\",\n    ]\n\n\ndef test_srp_to_srx(sraweb_connection):\n    \"\"\"Test if srp is converted to srx correctly\"\"\"\n    df = sraweb_connection.srp_to_srx(\"SRP044932\")\n    assert list(df[\"experiment_accession\"]) == [\"SRX663253\", \"SRX663254\"]\n\n\ndef test_gse_to_gsm(sraweb_connection):\n    \"\"\"Test if gse is converted to gsm correctly\"\"\"\n    df = sraweb_connection.gse_to_gsm(\"GSE56924\", detailed=False)\n    assert df.shape[0] == 96\n\n\ndef test_gse_to_gsm2(sraweb_connection):\n    \"\"\"Test for gse to gsm\"\"\"\n    df = sraweb_connection.gse_to_gsm(\"GSE200028\", detailed=False)\n    assert df.shape[0] == 15\n\n\ndef test_gse_to_gsm1(sraweb_connection):\n    \"\"\"Test if gse_to_gsm works without passing `detailed` parameter\"\"\"\n    df = sraweb_connection.gse_to_gsm(\"GSE63858\")\n    assert list(sorted(df[\"experiment_alias\"])) == [\"GSM1558530\", \"GSM1558531\"]\n\n\ndef test_gse_to_srp(sraweb_connection):\n    \"\"\"Test if gse is converted to srp correctly\"\"\"\n    df = sraweb_connection.gse_to_srp(\"GSE63858\")\n    assert df[\"study_accession\"].tolist()[0] == \"SRP050548\"\n\n\ndef test_gse_to_srp2(sraweb_connection):\n    \"\"\"Test if gse is converted to srp correctly\"\"\"\n    df = sraweb_connection.gse_to_srp([\"GSE168880\", \"GSE209835\"])\n    assert df[\"study_accession\"].tolist()[0] == \"SRP310566\"\n    assert df[\"study_accession\"].tolist()[1] == \"SRP388275\"\n\n\ndef test_gse_to_srp_with_nan_sra(sraweb_connection):\n    \"\"\"Test gse_to_srp when GSE has NaN SRA field but GSM entries have SRX values\n\n    GSE192742 has no direct SRA link in the GSE entry, but GSM entries contain\n    SRX accessions (like SRX13549307).\n\n    Expected: SRP352825 (and possibly SRP352824 depending on GSM distribution)\n    \"\"\"\n    df = sraweb_connection.gse_to_srp(\"GSE192742\")\n    assert not df.empty\n    assert \"GSE192742\" in df[\"study_alias\"].tolist()\n    srps = df[\"study_accession\"].tolist()\n    assert \"SRP352825\" in srps\n    assert all(pd.notna(srps))\n\n\ndef test_gsm_to_srp(sraweb_connection):\n    \"\"\"Test if gsm is converted to srp correctly\"\"\"\n    df = sraweb_connection.gsm_to_srp(\"GSM1371490\")\n    assert df[\"study_accession\"].tolist()[0] == \"SRP041298\"\n\n\ndef test_gsm_to_gse(sraweb_connection):\n    \"\"\"Test if gsm is converted to gse correctly\"\"\"\n    df = sraweb_connection.gsm_to_gse(\"GSM1371490\")\n    assert df[\"study_alias\"].tolist()[0] == \"GSE56924\"\n\n\ndef test_gsm_to_gse_multiple_gses(sraweb_connection):\n    \"\"\"Test GSM that maps to multiple GSE accessions (GSM7430904 -> GSE233587, GSE234305)\"\"\"\n    df = sraweb_connection.gsm_to_gse(\"GSM7430904\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    assert \"study_alias\" in df.columns\n    assert \"study_accession\" in df.columns\n    study_aliases = df[\"study_alias\"].tolist()\n    assert len(study_aliases) >= 2\n    study_aliases = df[\"study_alias\"].tolist()\n    expected_gses = {\"GSE233587\", \"GSE234305\"}\n    actual_gses = set(study_aliases)\n    assert expected_gses.issubset(\n        actual_gses\n    ), f\"Expected {expected_gses} to be subset of {actual_gses}\"\n\n    assert \"GSE234305\" in study_aliases\n\n\ndef test_gsm_to_srr(sraweb_connection):\n    \"\"\"Test if gsm is converted to srr correctly\"\"\"\n    df = sraweb_connection.gsm_to_srr(\"GSM1371489\")\n    assert df[\"run_accession\"].tolist()[0] == \"SRR1257271\"\n\n\ndef test_gsm_to_srs(sraweb_connection):\n    \"\"\"Test if gsm is converted to srs correctly\"\"\"\n    df = sraweb_connection.gsm_to_srs(\"GSM1371469\")\n    assert df[\"sample_accession\"].tolist()[0] == \"SRS594838\"\n\n\ndef test_gsm_to_srx(sraweb_connection):\n    \"\"\"Test if gsm is converted to srx correctly\"\"\"\n    df = sraweb_connection.gsm_to_srx(\"GSM1371454\")\n    assert list(df[\"experiment_accession\"]) == [\"SRX522468\"]\n\n\ndef test_srr_to_gsm(sraweb_connection):\n    df = sraweb_connection.srr_to_gsm(\"SRR057515\")\n    assert df[\"experiment_alias\"].tolist()[0] == \"GSM546921\"\n\n\ndef test_srr_to_srp(sraweb_connection):\n    \"\"\"Test if srr is converted to srp correctly\"\"\"\n    df = sraweb_connection.srr_to_srp(\"SRR057511\", detailed=False)\n    assert list(df[\"study_accession\"]) == [\"SRP002605\"]\n\n\ndef test_srr_to_srp1(sraweb_connection):\n    \"\"\"Test if srr_to_srp works without passing the `detailed` parameter\"\"\"\n    df = sraweb_connection.srr_to_srp(\"SRR057515\")\n    assert list(df[\"study_accession\"]) == [\"SRP002605\"]\n\n\ndef test_srr_to_srs(sraweb_connection):\n    \"\"\"Test if srr is converted to srs correctly\"\"\"\n    df = sraweb_connection.srr_to_srs(\"SRR057513\")\n    assert list(df[\"sample_accession\"]) == [\"SRS079386\"]\n\n\ndef test_srr_to_srx(sraweb_connection):\n    \"\"\"Test if srr is converted to srx correctly\"\"\"\n    df = sraweb_connection.srr_to_srx(\"SRR057514\")\n    assert list(df[\"experiment_accession\"]) == [\"SRX021967\"]\n\n\ndef test_srs_to_gsm(sraweb_connection):\n    \"\"\"Test if srs is converted to gsm correctly\"\"\"\n    df = sraweb_connection.srs_to_gsm(\"SRS079386\")\n    assert df[\"experiment_alias\"][0] == \"GSM546921\"\n\n\ndef test_srs_to_srx(sraweb_connection):\n    \"\"\"Test if srs is converted to srx correctly\"\"\"\n    df = sraweb_connection.srs_to_srx(\"SRS594838\")\n    assert list(df[\"experiment_accession\"]) == [\"SRX522483\"]\n\n\ndef test_srx_to_gsm(sraweb_connection):\n    \"\"\"Test if srx is converted to gsm correctly\"\"\"\n    df = sraweb_connection.srx_to_gsm(\"SRX663253\")\n    assert list(df[\"experiment_alias\"]) == [\"GSM1446832\"]\n\n\ndef test_srx_to_srp(sraweb_connection):\n    \"\"\"Test if srx is converted to srp correctly\"\"\"\n    df = sraweb_connection.srx_to_srp(\"SRX663254\")\n    assert list(df[\"study_accession\"]) == [\"SRP044932\"]\n\n\ndef test_srx_to_srr(sraweb_connection):\n    \"\"\"Test if srx is converted to srr correctly\"\"\"\n    df = sraweb_connection.srx_to_srr(\"SRX2705123\")\n    assert list(df[\"run_accession\"]) == [\"SRR5413172\"]\n\n\ndef test_srx_to_srr1(sraweb_connection):\n    \"\"\"Test if srx is converted to srr correctly, including multiple srrs\"\"\"\n    df = sraweb_connection.srx_to_srr(\"SRX8998846\")\n    assert list(df[\"run_accession\"]) == [\"SRR12508064\", \"SRR12508065\"]\n\n\ndef test_srx_to_srs(sraweb_connection):\n    \"\"\"Test if srx is converted to srs correctly\"\"\"\n    df = sraweb_connection.srx_to_srs(\"SRX663253\")\n    assert list(df[\"sample_accession\"]) == [\"SRS668126\"]\n\n\n# This is currently failing\ndef _test_xmlns_id(sraweb_connection):\n    df = sraweb_connection.sra_metadata([\"GSM1013144\", \"GSM2520660\"])\n    library_layouts = list(df[\"library_layout\"])\n    assert library_layouts[0] == \"PAIRED\"\n    assert library_layouts[1] == \"SINGLE\"\n\n\ndef test_GCP_url(sraweb_connection):\n    df = sraweb_connection.sra_metadata([\"SRP002605\"], detailed=True)\n    assert df[\"gcp_url\"].tolist()[-1].startswith(\"gs:\")\n\n\ndef test_GCP_url2(sraweb_connection):\n    df = sraweb_connection.sra_metadata([\"DRR138929\"], detailed=True)\n    assert df[\"gcp_url\"].tolist()[-1].startswith(\"gs:\")\n\n\ndef test_gse_to_srp3(sraweb_connection):\n    # https://github.com/saketkc/pysradb/issues/190\n    df = sraweb_connection.gse_to_srp([\"GSE89545\"])\n    assert df[\"study_accession\"].tolist()[0] == \"SRP093251\"\n\n\ndef test_gse_to_srp_multiple_srps(sraweb_connection):\n    \"\"\"Test GSE that maps to multiple SRP accessions (GSE234305 -> SRP411077, SRP439808)\"\"\"\n    df = sraweb_connection.gse_to_srp(\"GSE234305\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    assert \"study_alias\" in df.columns\n    assert \"study_accession\" in df.columns\n\n    # Check that GSE234305 maps to the expected SRPs\n    study_aliases = df[\"study_alias\"].tolist()\n    study_accessions = df[\"study_accession\"].tolist()\n\n    assert \"GSE234305\" in study_aliases\n    # Should map to multiple SRPs\n    assert len(set(study_accessions)) >= 2\n    # Check for the known SRP accessions\n    expected_srps = {\"SRP411077\", \"SRP439808\"}\n    actual_srps = set(study_accessions)\n    assert expected_srps.issubset(\n        actual_srps\n    ), f\"Expected {expected_srps} to be subset of {actual_srps}\"\n\n\ndef test_geo_metadata_for_gse_without_srp(sraweb_connection):\n    \"\"\"GSE286254 should return GEO metadata even without SRP links\"\"\"\n    df = sraweb_connection.geo_metadata(\"GSE286254\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    assert \"GSE286254\" in df[\"study_accession\"].unique()\n    assert \"GSM8721777\" in df[\"sample_accession\"].values\n\n\ndef test_geo_metadata_with_sample_attributes(sraweb_connection):\n    \"\"\"Ensure sample_attribute flag adds sample summaries\"\"\"\n    df = sraweb_connection.geo_metadata(\"GSE286254\", sample_attribute=True)\n    assert \"sample_summary\" in df.columns\n    assert df[\"sample_summary\"].notna().any()\n\n\ndef test_geo_metadata_covid19_characteristics(sraweb_connection):\n    \"\"\"Test GSE155673 COVID-19 metadata with disease_status and custom characteristics\"\"\"\n    df = sraweb_connection.geo_metadata(\"GSE155673\", detailed=True)\n\n    # Find the specific sample GSM4712885\n    sample = df[df[\"sample_accession\"] == \"GSM4712885\"]\n    assert not sample.empty, \"Sample GSM4712885 not found\"\n\n    # Verify disease field captures disease_status\n    disease_value = sample[\"disease\"].iloc[0]\n    assert pd.notna(disease_value), \"Disease field should not be NA\"\n    assert (\n        \"COVID-19\" in str(disease_value).upper()\n        or \"COVID\" in str(disease_value).upper()\n    ), f\"Disease should contain COVID-19, got: {disease_value}\"\n\n    # Verify custom characteristics are captured\n    assert \"disease_severity\" in df.columns, \"disease_severity column should exist\"\n    assert (\n        \"days_since_symptom_onset\" in df.columns\n    ), \"days_since_symptom_onset column should exist\"\n\n    # Verify values for GSM4712885\n    sample_severity = sample[\"disease_severity\"].iloc[0]\n    assert pd.notna(\n        sample_severity\n    ), \"disease_severity should not be NA for COVID sample\"\n    assert \"Severe\" in str(\n        sample_severity\n    ), f\"Expected 'Severe', got: {sample_severity}\"\n\n    days_onset = sample[\"days_since_symptom_onset\"].iloc[0]\n    assert pd.notna(days_onset), \"days_since_symptom_onset should not be NA\"\n    assert str(days_onset) == \"15\", f\"Expected '15', got: {days_onset}\"\n\n    # Verify standard fields\n    assert sample[\"sex\"].iloc[0] == \"F\", \"Sex should be F\"\n    assert str(sample[\"age\"].iloc[0]) == \"75\", \"Age should be 75\"\n    assert sample[\"cell_type\"].iloc[0] == \"PBMC\", \"Cell type should be PBMC\"\n\n    # Verify comprehensive SOFT field capture (no filtering)\n    # These fields should be present when detailed=True\n    expected_soft_fields = [\n        \"sample_instrument_model\",\n        \"sample_library_strategy\",\n        \"sample_library_source\",\n        \"sample_organism_ch1\",\n        \"sample_taxid_ch1\",\n        \"sample_molecule_ch1\",\n        \"sample_contact_name\",\n        \"sample_contact_institute\",\n        \"sample_data_processing\",\n        \"sample_platform_id\",\n    ]\n\n    for field in expected_soft_fields:\n        assert (\n            field in df.columns\n        ), f\"SOFT field '{field}' should be captured in detailed mode\"\n        assert pd.notna(\n            sample[field].iloc[0]\n        ), f\"SOFT field '{field}' should have a value\"\n\n    # Verify specific values for comprehensive check\n    assert \"Illumina\" in str(\n        sample[\"sample_instrument_model\"].iloc[0]\n    ), \"Should capture instrument model\"\n    assert (\n        sample[\"sample_library_strategy\"].iloc[0] == \"RNA-Seq\"\n    ), \"Should capture library strategy\"\n    assert (\n        str(sample[\"sample_taxid_ch1\"].iloc[0]) == \"9606\"\n    ), \"Should capture taxid (human)\"\n\n\ndef test_fetch_bioproject_pmids(sraweb_connection):\n    \"\"\"Test fetching PMIDs for BioProject accessions\"\"\"\n    # Use a known BioProject that should have publications\n    result = sraweb_connection.fetch_bioproject_pmids(\"PRJNA257197\")\n    assert isinstance(result, dict)\n    assert \"PRJNA257197\" in result\n\n\ndef test_fetch_bioproject_pmids_multiple(sraweb_connection):\n    \"\"\"Test fetching PMIDs for multiple BioProjects\"\"\"\n    bioprojects = [\"PRJNA257197\", \"PRJNA200000\"]  # Mix of real and potentially missing\n    result = sraweb_connection.fetch_bioproject_pmids(bioprojects)\n    assert isinstance(result, dict)\n    assert len(result) == 2\n    for bp in bioprojects:\n        assert bp in result\n        assert isinstance(result[bp], list)\n    # Check that PRJNA200000 returns an empty list (no PMIDs)\n    assert result[\"PRJNA200000\"] == []\n\n\ndef test_search_pmc_by_bioproject(sraweb_connection):\n    \"\"\"Test PMC search fallback for bioproject IDs\"\"\"\n    # PRJEB39301 doesn't have PMIDs in bioproject XML but is cited in PMC (PMC8379757)\n    pmids = sraweb_connection._search_pmc_by_bioproject(\"PRJEB39301\")\n    assert isinstance(pmids, list)\n    assert len(pmids) > 0\n    # Should find PMID 34419158 (from PMC8379757)\n    assert \"34419158\" in pmids\n\n\ndef test_fetch_bioproject_pmids_with_pmc_fallback(sraweb_connection):\n    \"\"\"Test that fetch_bioproject_pmids falls back to PMC search when XML has no PMIDs\"\"\"\n    # PRJEB39301 - bioproject XML has no publications, but PMC search should find them\n    result = sraweb_connection.fetch_bioproject_pmids(\"PRJEB39301\")\n    assert isinstance(result, dict)\n    assert \"PRJEB39301\" in result\n    assert isinstance(result[\"PRJEB39301\"], list)\n    # Should have found PMID via PMC fallback\n    assert len(result[\"PRJEB39301\"]) > 0\n    assert \"34419158\" in result[\"PRJEB39301\"]\n\n\ndef test_srp_to_pmid_with_pmc_fallback(sraweb_connection):\n    \"\"\"Test srp_to_pmid with bioproject that uses PMC fallback\"\"\"\n    # ERP122802 uses PRJEB39301 which requires PMC fallback to find PMID\n    df = sraweb_connection.srp_to_pmid(\"ERP122802\")\n    assert isinstance(df, pd.DataFrame)\n    assert \"srp_accession\" in df.columns\n    assert \"bioproject\" in df.columns\n    assert \"pmid\" in df.columns\n    # Check that we got a result for ERP122802\n    assert len(df) > 0\n    erp_row = df[df[\"srp_accession\"] == \"ERP122802\"]\n    assert len(erp_row) > 0\n    # Should have PMID 34419158 via PMC fallback\n    assert erp_row.iloc[0][\"pmid\"] == \"34419158\"\n\n\ndef test_sra_to_pmid(sraweb_connection):\n    \"\"\"Test SRA to PMID functionality (backward compatibility)\"\"\"\n    df = sraweb_connection.sra_to_pmid(\"SRP002605\")\n    assert isinstance(df, pd.DataFrame)\n    required_columns = {\"srp_accession\", \"bioproject\", \"pmid\"}\n    assert required_columns.issubset(set(df.columns))\n\n\ndef test_srp_to_pmid(sraweb_connection):\n    \"\"\"Test SRP to PMID main method\"\"\"\n    df = sraweb_connection.srp_to_pmid(\"SRP002605\")\n    assert isinstance(df, pd.DataFrame)\n    assert \"srp_accession\" in df.columns\n    assert \"pmid\" in df.columns\n\n\ndef test_srr_to_pmid(sraweb_connection):\n    \"\"\"Test SRR to PMID convenience method\"\"\"\n    df = sraweb_connection.srr_to_pmid(\"SRR057511\")\n    assert isinstance(df, pd.DataFrame)\n    assert \"srp_accession\" in df.columns\n    assert \"pmid\" in df.columns\n\n\ndef test_sra_to_pmid_multiple(sraweb_connection):\n    \"\"\"Test SRA to PMID with multiple accessions (backward compatibility)\"\"\"\n    df = sraweb_connection.sra_to_pmid([\"SRP002605\", \"SRP016501\"])\n    assert isinstance(df, pd.DataFrame)\n    assert len(df) >= 2  # Should have at least one row per input SRA\n\n\ndef test_srp_to_pmid_multiple(sraweb_connection):\n    \"\"\"Test SRP to PMID with multiple accessions\"\"\"\n    df = sraweb_connection.srp_to_pmid([\"SRP002605\", \"SRP016501\"])\n    assert isinstance(df, pd.DataFrame)\n    assert len(df) >= 2  # Should have at least one row per input SRP\n    assert \"srp_accession\" in df.columns\n    assert \"pmid\" in df.columns\n\n\ndef test_gse_to_pmid(sraweb_connection):\n    \"\"\"Test GSE to PMID functionality\"\"\"\n    df = sraweb_connection.gse_to_pmid(\"GSE253406\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"gse_accession\", \"pmid\"}\n    assert required_columns.issubset(df.columns)\n\n\ndef test_gse_to_pmid_multiple(sraweb_connection):\n    \"\"\"Test GSE to PMID with multiple accessions\"\"\"\n    df = sraweb_connection.gse_to_pmid([\"GSE253406\", \"GSE168776\"])\n    assert isinstance(df, pd.DataFrame)\n    assert len(df) >= 2  # Should have one row per input GSE\n    assert \"gse_accession\" in df.columns\n    assert \"pmid\" in df.columns\n\n\ndef test_pmid_to_pmc(sraweb_connection):\n    \"\"\"Test PMID to PMC conversion\"\"\"\n    mapping = sraweb_connection.pmid_to_pmc(\"27373336\")\n    assert isinstance(mapping, dict)\n    assert \"27373336\" in mapping\n\n\ndef test_pmid_to_pmc_multiple(sraweb_connection):\n    \"\"\"Test PMID to PMC with multiple PMIDs\"\"\"\n    mapping = sraweb_connection.pmid_to_pmc([\"27373336\", \"39528918\"])\n    assert isinstance(mapping, dict)\n    assert len(mapping) == 2\n\n\ndef test_extract_identifiers_from_text(sraweb_connection):\n    \"\"\"Test extraction of identifiers from text\"\"\"\n    test_text = \"This study uses data from GSE12345 and SRP067890. The BioProject is PRJNA123456 with samples SRR1234567.\"\n    identifiers = sraweb_connection.extract_identifiers_from_text(test_text)\n    assert isinstance(identifiers, dict)\n    assert \"GSE12345\" in identifiers[\"gse\"]\n    assert \"SRP067890\" in identifiers[\"srp\"]\n    assert \"PRJNA123456\" in identifiers[\"prjna\"]\n    assert \"SRR1234567\" in identifiers[\"srr\"]\n\n\n@pytest.mark.slow\ndef test_pmc_to_identifiers(sraweb_connection):\n    \"\"\"Test PMC to identifiers extraction - requires PMC full text access\"\"\"\n    # Using a known PMC article that mentions GEO/SRA identifiers\n    df = sraweb_connection.pmc_to_identifiers(\"PMC5316890\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"pmc_id\", \"gse_ids\", \"srp_ids\", \"prjna_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\n@pytest.mark.slow\ndef test_pmid_to_identifiers(sraweb_connection):\n    \"\"\"Test PMID to identifiers extraction\"\"\"\n    df = sraweb_connection.pmid_to_identifiers(\"27373336\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"pmid\", \"pmc_id\", \"gse_ids\", \"srp_ids\", \"prjna_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\n@pytest.mark.slow\ndef test_pmid_to_gse(sraweb_connection):\n    \"\"\"Test PMID to GSE extraction\"\"\"\n    df = sraweb_connection.pmid_to_gse(\"27373336\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"pmid\", \"pmc_id\", \"gse_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\n@pytest.mark.slow\ndef test_pmid_to_srp(sraweb_connection):\n    \"\"\"Test PMID to SRP extraction\"\"\"\n    df = sraweb_connection.pmid_to_srp(\"27373336\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"pmid\", \"pmc_id\", \"srp_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\ndef test_doi_to_pmid(sraweb_connection):\n    \"\"\"Test DOI to PMID conversion\"\"\"\n    mapping = sraweb_connection.doi_to_pmid(\"10.12688/f1000research.18676.1\")\n    assert isinstance(mapping, dict)\n    assert \"10.12688/f1000research.18676.1\" in mapping\n\n\ndef test_doi_to_pmid_multiple(sraweb_connection):\n    \"\"\"Test DOI to PMID with multiple DOIs\"\"\"\n    mapping = sraweb_connection.doi_to_pmid(\n        [\"10.12688/f1000research.18676.1\", \"10.1186/s13059-016-1070-5\"]\n    )\n    assert isinstance(mapping, dict)\n    assert len(mapping) == 2\n\n\n@pytest.mark.slow\ndef test_doi_to_identifiers(sraweb_connection):\n    \"\"\"Test DOI to identifiers extraction\"\"\"\n    df = sraweb_connection.doi_to_identifiers(\"10.12688/f1000research.18676.1\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"doi\", \"pmid\", \"pmc_id\", \"gse_ids\", \"srp_ids\", \"prjna_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\n@pytest.mark.slow\ndef test_doi_to_gse(sraweb_connection):\n    \"\"\"Test DOI to GSE extraction\"\"\"\n    df = sraweb_connection.doi_to_gse(\"10.12688/f1000research.18676.1\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"doi\", \"pmid\", \"pmc_id\", \"gse_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\n@pytest.mark.slow\ndef test_doi_to_srp(sraweb_connection):\n    \"\"\"Test DOI to SRP extraction\"\"\"\n    df = sraweb_connection.doi_to_srp(\"10.12688/f1000research.18676.1\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    required_columns = {\"doi\", \"pmid\", \"pmc_id\", \"srp_ids\"}\n    assert required_columns.issubset(df.columns)\n\n\ndef test_unified_metadata_with_gse(sraweb_connection):\n    \"\"\"Test unified metadata() function with GSE accession\"\"\"\n    df = sraweb_connection.metadata(\"GSE286254\")\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    assert \"GSE286254\" in df[\"study_accession\"].unique()\n\n\ndef test_unified_metadata_with_srp(sraweb_connection):\n    \"\"\"Test unified metadata() function with SRP accession\"\"\"\n    df = sraweb_connection.metadata(\"SRP016501\")\n    assert isinstance(df, pd.DataFrame)\n    assert df.shape[0] == 134\n    assert \"SRP016501\" in df[\"study_accession\"].unique()\n\n\ndef test_unified_metadata_with_multiple_gse(sraweb_connection):\n    \"\"\"Test unified metadata() function with multiple GSE accessions\"\"\"\n    df = sraweb_connection.metadata([\"GSE168880\", \"GSE209835\"])\n    assert isinstance(df, pd.DataFrame)\n    assert not df.empty\n    gse_ids = df[\"study_accession\"].unique()\n    assert \"GSE168880\" in gse_ids or \"GSE209835\" in gse_ids\n\n\ndef test_unified_metadata_invalid_accession(sraweb_connection):\n    \"\"\"Test unified metadata() function with invalid accession type\"\"\"\n    with pytest.raises(ValueError, match=\"Unsupported accession type\"):\n        sraweb_connection.metadata(\"INVALID123\")\n"
  },
  {
    "path": "tests/test_utils.py",
    "content": "\"\"\"Tests for utils.py\"\"\"\n\nimport pytest\n\nfrom pysradb.utils import *\n\n\n@pytest.fixture(scope=\"module\")\ndef invalid_name():\n    return \"Red blood cells\"\n\n\n@pytest.fixture(scope=\"module\")\ndef valid_name():\n    return \"Homo sapiens\"\n\n\ndef invalid_scientific_name_to_taxid(invalid_name):\n    with pytest.raises(IncorrectFieldException) as e:\n        scientific_name_to_taxid(invalid_name)\n    assert \"Unknown scientific name\" in str(e.value)\n\n\ndef valid_scientific_name_to_taxid(valid_name):\n    assert scientific_name_to_taxid(valid_name) == \"9606\"\n"
  }
]