SYMBOL INDEX (14 symbols across 3 files)

FILE: scripts/bam_HiCplotter.py
  function get_read_pos_with_sam_bam_file (line 10) | def get_read_pos_with_sam_bam_file(sam_bam_file):
  function get_chr_len (line 37) | def get_chr_len(chr_list):
  function calc_read_count_per_bin (line 51) | def calc_read_count_per_bin(chr_len_db, chr_order, read_on_chr, bin_size):
  function draw_heatmap (line 115) | def draw_heatmap(data, chrn, bin_size, ext):

FILE: scripts/partition_gmap.py
  function get_opt (line 9) | def get_opt():
  function read_fasta (line 19) | def read_fasta(in_fa):
  function load_allele (line 34) | def load_allele(allele_table):
  function split_files (line 63) | def split_files(chrn, allele_table, ref, bam_file, wrkdir):
  function partition_gmap (line 86) | def partition_gmap(ref, allele_table, bam, wrkdir, threads):

FILE: scripts/remove_small_contigs.py
  function assembly_to_groups (line 11) | def assembly_to_groups(assembly, len_cutoff):
  function output_clusters (line 29) | def output_clusters(ctg_dict, cluster_list):
  function output_counts (line 37) | def output_counts(ctg_dict, counts):
  function output_fasta (line 48) | def output_fasta(ctg_dict, fasta):
  function main (line 62) | def main():