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Repository: the-turing-way/the-turing-way
Branch: main
Commit: 73a7b88e56f0
Files: 575
Total size: 4.4 MB
Directory structure:
gitextract_nsbykdd0/
├── .all-contributorsrc
├── .github/
│ ├── ISSUE_TEMPLATE/
│ │ ├── 01_bug_report.yml
│ │ ├── 02_edit_a_chapter.yml
│ │ ├── 03_new_chapter.yml
│ │ ├── 04_request_translation.yml
│ │ ├── 05_general.yml
│ │ └── config.yml
│ ├── PULL_REQUEST_TEMPLATE.md
│ ├── config.yml
│ ├── dependabot.yaml
│ ├── in-solidarity.yml
│ ├── release-drafter.yml
│ └── workflows/
│ ├── accessibility-alt-text-bot.yml
│ ├── ci.yml
│ ├── crowdin-contributors.yml
│ ├── external_link_check.yml
│ ├── lorem-ipsums.yml
│ ├── no-bad-latin.yml
│ ├── release-drafter.yml
│ ├── release-workflow.yml
│ ├── resources/
│ │ └── external_link_check_header.md
│ ├── test-file-size.yml
│ ├── validate-all-contributorsrc.yml
│ ├── validate-dependabot.yml
│ ├── validate_citation.yml
│ ├── validate_issue_templates.yml
│ └── yamllint.yaml
├── .gitignore
├── .yamllint
├── .zenodo.json
├── ACCESSIBILITY.md
├── CITATION.cff
├── CODEOWNERS
├── CODE_OF_CONDUCT.md
├── CONTRIBUTING.md
├── GOVERNANCE_ROLES.md
├── LICENSE.md
├── README-translated/
│ ├── README-Chinese.md
│ ├── README-Dutch.md
│ ├── README-French.md
│ ├── README-German.md
│ ├── README-Indonesian.md
│ ├── README-Italian.md
│ ├── README-Korean.md
│ ├── README-Papiamento.md
│ ├── README-Portuguese.md
│ └── README-Spanish.md
├── README.md
├── Vagrantfile
├── book/
│ ├── .gitignore
│ ├── .words.lst
│ ├── Makefile
│ ├── README.md
│ ├── figures/
│ │ ├── logo/
│ │ │ ├── .picasa.ini
│ │ │ └── site.webmanifest
│ │ ├── main-branch.kra
│ │ ├── one-branch.kra
│ │ ├── sub-branch.kra
│ │ └── two-branches.kra
│ ├── requirements.in
│ ├── requirements.txt
│ ├── templates/
│ │ ├── book-stats.csv
│ │ ├── case-study-template/
│ │ │ ├── README.md
│ │ │ ├── case-study-template.md
│ │ │ └── reflection-questions.md
│ │ ├── chapter-template/
│ │ │ ├── README.md
│ │ │ ├── chapter-content/
│ │ │ │ ├── chapter-checklist.md
│ │ │ │ ├── chapter-content.md
│ │ │ │ ├── chapter-personal-stories.md
│ │ │ │ └── chapter-resources.md
│ │ │ └── chapter-landing-page.md
│ │ └── count-chapters.sh
│ └── website/
│ ├── LICENSE.md
│ ├── afterword/
│ │ ├── afterword.md
│ │ ├── bibliography.md
│ │ ├── collaborators.md
│ │ ├── contributors/
│ │ │ ├── all-contributors.md
│ │ │ ├── profiles.md
│ │ │ └── translators.md
│ │ ├── contributors-record.md
│ │ ├── data-usage-statement.md
│ │ ├── glossary.md
│ │ ├── legal-disclaimer.md
│ │ └── subprojects.md
│ ├── analytics/
│ │ └── web-analytics.js
│ ├── collaboration/
│ │ ├── academic-industry/
│ │ │ ├── academic-industry-community.md
│ │ │ ├── academic-industry-establish.md
│ │ │ ├── case-studies/
│ │ │ │ ├── BridgeAI_IndependentScientificAdvice.md
│ │ │ │ ├── practitioners-hub-case-study.md
│ │ │ │ └── turing-roche-case-study.md
│ │ │ ├── case-study-library.md
│ │ │ ├── intro-case-studies-and-best-practices-in-academic-industry-collaboration.md
│ │ │ └── online-resources-best-practices.md
│ │ ├── academic-industry.md
│ │ ├── ambassador-schemes/
│ │ │ ├── ambassador-schemes-establish.md
│ │ │ └── ambassador-schemes-personal-story.md
│ │ ├── ambassador-schemes.md
│ │ ├── collaboration.md
│ │ ├── github-novice/
│ │ │ ├── github-novice-advanced.md
│ │ │ ├── github-novice-features.md
│ │ │ ├── github-novice-firststeps.md
│ │ │ └── github-novice-motivation.md
│ │ ├── github-novice.md
│ │ ├── leadership/
│ │ │ ├── leadership-building.md
│ │ │ ├── leadership-features.md
│ │ │ ├── leadership-opportunities.md
│ │ │ ├── leadership-story-data-librarian.md
│ │ │ └── leadership-story-hackathon.md
│ │ ├── leadership.md
│ │ ├── maintain-review/
│ │ │ ├── maintain-review-maintenance.md
│ │ │ ├── maintain-review-merge.md
│ │ │ ├── maintain-review-permissions.md
│ │ │ ├── maintain-review-resources.md
│ │ │ └── maintain-review-review.md
│ │ ├── maintain-review.md
│ │ ├── meetings-events-co-working/
│ │ │ ├── chairing.md
│ │ │ ├── event-tools.md
│ │ │ ├── hybrid-collab/
│ │ │ │ ├── hybrid-collab-challenges.md
│ │ │ │ ├── hybrid-collab-guidelines.md
│ │ │ │ └── hybrid-collab-resources.md
│ │ │ ├── hybrid-collab.md
│ │ │ ├── organising-coding-cafe.md
│ │ │ ├── organising-conference/
│ │ │ │ ├── reg-form-template.md
│ │ │ │ └── reg-forms.md
│ │ │ ├── organising-conference.md
│ │ │ ├── ppie-events/
│ │ │ │ ├── ppie-events-comms.md
│ │ │ │ ├── ppie-events-location.md
│ │ │ │ ├── ppie-events-planning.md
│ │ │ │ ├── ppie-events-resources.md
│ │ │ │ ├── ppie-events-schedules.md
│ │ │ │ ├── ppie-events-socials.md
│ │ │ │ └── ppie-events-tech.md
│ │ │ ├── ppie-events.md
│ │ │ ├── remote-collab/
│ │ │ │ ├── coworking.md
│ │ │ │ ├── event-participation.md
│ │ │ │ ├── informal-chats.md
│ │ │ │ ├── organising-remote-meetings.md
│ │ │ │ ├── remote-collab-guidelines.md
│ │ │ │ ├── remote-collab-prosandcons.md
│ │ │ │ ├── remote-collab-team.md
│ │ │ │ └── remote-collab-useful-resources.md
│ │ │ └── remote-collab.md
│ │ ├── meetings-events-co-working.md
│ │ ├── new-community/
│ │ │ ├── new-community-differences.md
│ │ │ ├── new-community-guide.md
│ │ │ ├── new-community-teamwork.md
│ │ │ └── new-community-techissues.md
│ │ ├── new-community.md
│ │ ├── oss-sustainability/
│ │ │ ├── oss-sustainability-challenges.md
│ │ │ └── oss-sustainability-examples.md
│ │ ├── research-infrastructure-roles/
│ │ │ ├── community-manager.md
│ │ │ ├── data-steward-personal-story.md
│ │ │ ├── data-steward.md
│ │ │ ├── data-wrangler.md
│ │ │ ├── ram.md
│ │ │ ├── research-community-manager-personal-story-1.md
│ │ │ ├── research-infrastructure-developer.md
│ │ │ ├── rse-personal-story.md
│ │ │ └── rse.md
│ │ ├── research-infrastructure-roles.md
│ │ ├── shared-ownership/
│ │ │ ├── shared-ownership-challenges.md
│ │ │ ├── shared-ownership-defaults.md
│ │ │ ├── shared-ownership-models.md
│ │ │ └── shared-ownership-projects.md
│ │ ├── shared-ownership.md
│ │ ├── stakeholder-engagement.md
│ │ ├── team-manual/
│ │ │ └── team-manual-on-off-boarding.md
│ │ └── team-manual.md
│ ├── communication/
│ │ ├── aa/
│ │ │ ├── aa-equitable.md
│ │ │ ├── aa-misconduct.md
│ │ │ ├── aa-overview.md
│ │ │ ├── aa-resources.md
│ │ │ ├── aa-stories-community.md
│ │ │ ├── aa-stories-interdisciplinary.md
│ │ │ ├── aa-tips.md
│ │ │ └── aa-traditions.md
│ │ ├── aa.md
│ │ ├── binder/
│ │ │ └── zero-to-binder.md
│ │ ├── binder.md
│ │ ├── blogs/
│ │ │ ├── blogs-personal-stories.md
│ │ │ └── blogs-webpage.md
│ │ ├── blogs.md
│ │ ├── citable/
│ │ │ ├── citable-cff.md
│ │ │ ├── citable-cffinit.md
│ │ │ ├── citable-cite.md
│ │ │ ├── citable-linking.md
│ │ │ ├── citable-metadata.md
│ │ │ ├── citable-orcid.md
│ │ │ ├── citable-otherscite.md
│ │ │ ├── citable-resources.md
│ │ │ ├── citable-steps.md
│ │ │ └── citable-versioning.md
│ │ ├── citable.md
│ │ ├── comms-overview/
│ │ │ ├── comms-overview-accessibly.md
│ │ │ ├── comms-overview-principles.md
│ │ │ └── comms-overview-resources.md
│ │ ├── comms-overview.md
│ │ ├── communication.md
│ │ ├── dif-articles/
│ │ │ ├── data.md
│ │ │ ├── methods.md
│ │ │ ├── micro.md
│ │ │ ├── reg.md
│ │ │ └── software.md
│ │ ├── dif-articles.md
│ │ ├── lay-summaries/
│ │ │ └── lay-summaries-personal-stories.md
│ │ ├── lay-summaries.md
│ │ ├── open/
│ │ │ ├── curriculum-development.md
│ │ │ ├── education.md
│ │ │ └── embedding-ds.md
│ │ ├── open.md
│ │ ├── os-comms/
│ │ │ ├── os-comms-channels.md
│ │ │ └── os-comms-issue-tracking.md
│ │ ├── os-comms.md
│ │ ├── peer-review/
│ │ │ ├── peer-review-code.md
│ │ │ ├── peer-review-guidance.md
│ │ │ ├── peer-review-open.md
│ │ │ ├── peer-review-overview.md
│ │ │ └── peer-review-resources.md
│ │ ├── peer-review.md
│ │ ├── personal/
│ │ │ ├── personal-cv.md
│ │ │ └── personal-website.md
│ │ ├── personal.md
│ │ ├── podcasts/
│ │ │ └── podcasts-personal-stories.md
│ │ ├── podcasts.md
│ │ ├── presentations/
│ │ │ ├── presentations-personal-stories.md
│ │ │ └── presentations-remote.md
│ │ ├── presentations.md
│ │ ├── research-objects/
│ │ │ ├── ro-concepts.md
│ │ │ └── ro-implementation.md
│ │ ├── research-objects.md
│ │ ├── social-media/
│ │ │ ├── social-media-twitter-multiple.md
│ │ │ └── social-media-twitter-tips.md
│ │ └── social-media.md
│ ├── community-handbook/
│ │ ├── accessibility/
│ │ │ ├── accessibility-alt-text.md
│ │ │ ├── accessibility-comms-platforms.md
│ │ │ ├── accessibility-event-organising.md
│ │ │ └── accessibility-policy.md
│ │ ├── accessibility.md
│ │ ├── acknowledgement/
│ │ │ ├── acknowledgement-examples.md
│ │ │ ├── acknowledgement-members.md
│ │ │ └── acknowledgement-record.md
│ │ ├── acknowledgement.md
│ │ ├── bookdash/
│ │ │ ├── bookdash-after.md
│ │ │ ├── bookdash-application.md
│ │ │ ├── bookdash-events.md
│ │ │ ├── bookdash-illustrator.md
│ │ │ ├── bookdash-logistics.md
│ │ │ └── bookdash-selection.md
│ │ ├── bookdash.md
│ │ ├── coc/
│ │ │ ├── coc-acknowledgement.md
│ │ │ ├── coc-details.md
│ │ │ ├── coc-enforcement.md
│ │ │ └── coc-reporting.md
│ │ ├── coc.md
│ │ ├── communication-channels/
│ │ │ ├── slack-start-guide.md
│ │ │ └── slack-welcome-guide.md
│ │ ├── communication-channels.md
│ │ ├── community-calls/
│ │ │ ├── calendar.md
│ │ │ ├── community-calls-collabcafe.md
│ │ │ ├── community-calls-forums.md
│ │ │ ├── community-calls-motivation.md
│ │ │ └── community-calls-working-groups.md
│ │ ├── community-calls.md
│ │ ├── community-handbook.md
│ │ ├── contributing-chapters/
│ │ │ ├── contributing-templates.md
│ │ │ └── contributing-workflow.md
│ │ ├── contributing-chapters.md
│ │ ├── contributing.md
│ │ ├── fireside-chat/
│ │ │ ├── fireside-chat-checklist.md
│ │ │ └── fireside-chat-roles.md
│ │ ├── fireside-chat.md
│ │ ├── github-gardening.md
│ │ ├── infrastructure/
│ │ │ ├── infrastructure-contributors.md
│ │ │ ├── infrastructure-dns.md
│ │ │ ├── infrastructure-external-link-check.md
│ │ │ ├── infrastructure-pathways.md
│ │ │ ├── infrastructure-plugins.md
│ │ │ ├── infrastructure-redirects.md
│ │ │ └── infrastructure-teams-as-code.md
│ │ ├── infrastructure.md
│ │ ├── local-build.md
│ │ ├── newsletters/
│ │ │ ├── newsletters-process.md
│ │ │ ├── newsletters-style.md
│ │ │ └── newsletters-template.md
│ │ ├── newsletters.md
│ │ ├── onboarding-offboarding/
│ │ │ ├── offboarding-core-team.md
│ │ │ ├── onboarding-core-team.md
│ │ │ └── onboarding-general-calls.md
│ │ ├── onboarding-offboarding.md
│ │ ├── pathways/
│ │ │ ├── pathways-creation.md
│ │ │ └── pathways-example.md
│ │ ├── pathways.md
│ │ ├── presenting.md
│ │ ├── style/
│ │ │ ├── consistency/
│ │ │ │ ├── consistency-formatting.md
│ │ │ │ ├── consistency-language.md
│ │ │ │ └── consistency-structure.md
│ │ │ ├── style-blocks.md
│ │ │ ├── style-citing.md
│ │ │ ├── style-consistency.md
│ │ │ ├── style-crossref.md
│ │ │ ├── style-custom-roles-and-directives.md
│ │ │ ├── style-figures.md
│ │ │ ├── style-glossary.md
│ │ │ ├── style-videos.md
│ │ │ └── style-writing-markdown.md
│ │ ├── style.md
│ │ ├── templates/
│ │ │ ├── template-bookdash-feedback.md
│ │ │ ├── template-bookdash-github.md
│ │ │ ├── template-bookdash-index.md
│ │ │ ├── template-bookdash-notes.md
│ │ │ ├── template-bookdash-precall.md
│ │ │ ├── template-coworking-collabcafe.md
│ │ │ ├── template-fireside-chat.md
│ │ │ ├── template-new-chapter-announcement
│ │ │ └── template-newsletter-draft.md
│ │ ├── templates.md
│ │ ├── translation/
│ │ │ ├── translation-getting-started.md
│ │ │ ├── translation-hello-crowdin.md
│ │ │ ├── translation-localisation.md
│ │ │ └── translation-workflow.md
│ │ └── translation.md
│ ├── ethical-research/
│ │ ├── activism/
│ │ │ ├── activism-case-study-google.md
│ │ │ ├── activism-env-impact.md
│ │ │ ├── activism-robodebt.md
│ │ │ ├── activism-unionisation.md
│ │ │ └── activism-whistleblowing.md
│ │ ├── activism.md
│ │ ├── cultural-change/
│ │ │ ├── alt-models-discussion.md
│ │ │ └── cc-examples.md
│ │ ├── cultural-change.md
│ │ ├── data-feminism/
│ │ │ └── data-feminism-power.md
│ │ ├── data-feminism.md
│ │ ├── data-hazards/
│ │ │ ├── dh-case-study.md
│ │ │ ├── dh-how-to-use.md
│ │ │ └── dh-intro.md
│ │ ├── data-hazards.md
│ │ ├── ethical-research.md
│ │ ├── ethics-committees.md
│ │ ├── ethics-intro.md
│ │ ├── ethics-open-source-governance.md
│ │ ├── internal-policy.md
│ │ ├── law-policy/
│ │ │ ├── law-policy-ethics.md
│ │ │ ├── law-policy-resources.md
│ │ │ └── law-policy-rights.md
│ │ ├── law-policy.md
│ │ ├── preclinical-research.md
│ │ ├── self-reflection/
│ │ │ ├── sr-positionality.md
│ │ │ ├── sr-power.md
│ │ │ ├── sr-prompts.md
│ │ │ └── sr-resources.md
│ │ ├── self-reflection.md
│ │ └── social-data.md
│ ├── foreword/
│ │ ├── background.md
│ │ ├── cite.md
│ │ ├── community.md
│ │ ├── embracing-digital-commons.md
│ │ ├── emergent-strategy.md
│ │ ├── faqs.md
│ │ ├── foreword.md
│ │ ├── governance/
│ │ │ ├── governance-roles.md
│ │ │ └── ways-of-working.md
│ │ ├── governance.md
│ │ ├── guiding-principles.md
│ │ └── navigate.md
│ ├── index.md
│ ├── myst.yml
│ ├── pathways/
│ │ ├── pathways-community-management-concepts.md
│ │ ├── pathways-community-management-operations.md
│ │ ├── pathways-data-science-without-borders.md
│ │ ├── pathways-data-stewards.md
│ │ ├── pathways-early-career-researchers.md
│ │ ├── pathways-project-leaders.md
│ │ ├── pathways-research-software-engineers.md
│ │ ├── pathways-software-citation.md
│ │ └── pathways.md
│ ├── plugins/
│ │ └── profile.mjs
│ ├── project-design/
│ │ ├── data-security/
│ │ │ ├── data-governance/
│ │ │ │ ├── bigcode_casestudy.md
│ │ │ │ └── data-gov-ml.md
│ │ │ ├── data-governance.md
│ │ │ ├── sdp/
│ │ │ │ ├── biological.md
│ │ │ │ ├── combined.md
│ │ │ │ ├── confidential.md
│ │ │ │ ├── metadata.md
│ │ │ │ ├── personal.md
│ │ │ │ └── types.md
│ │ │ ├── sdp.md
│ │ │ ├── sdpm/
│ │ │ │ ├── data-privacy-strategies.md
│ │ │ │ ├── informed.md
│ │ │ │ ├── resources.md
│ │ │ │ └── sharing-sensitive-data.md
│ │ │ ├── sdpm.md
│ │ │ └── sdpw.md
│ │ ├── data-security.md
│ │ ├── info-management/
│ │ │ ├── code-styling.md
│ │ │ └── filenaming.md
│ │ ├── info-management.md
│ │ ├── missing-data/
│ │ │ ├── missing-data-checklist-resources.md
│ │ │ ├── missing-data-methods.md
│ │ │ ├── missing-data-structured-missingness.md
│ │ │ ├── missing-data-structures.md
│ │ │ └── missing-data-visualising-missingness.md
│ │ ├── missing-data.md
│ │ ├── pd-overview/
│ │ │ ├── pd-checklist.md
│ │ │ ├── pd-overview-methods.md
│ │ │ ├── pd-overview-planning.md
│ │ │ ├── pd-overview-repro.md
│ │ │ ├── pd-overview-sharing.md
│ │ │ ├── pd-overview-version.md
│ │ │ ├── project-repo/
│ │ │ │ ├── project-repo-advanced.md
│ │ │ │ ├── project-repo-contributors.md
│ │ │ │ ├── project-repo-participation.md
│ │ │ │ ├── project-repo-readme.md
│ │ │ │ ├── project-repo-resources.md
│ │ │ │ └── project-repo-roadmapping.md
│ │ │ └── project-repo.md
│ │ ├── pd-overview.md
│ │ ├── project-design.md
│ │ ├── project-management-methodologies/
│ │ │ └── overview.md
│ │ ├── risks-of-bias/
│ │ │ ├── confounding-variables.md
│ │ │ ├── discrimination-bias.md
│ │ │ ├── identifying-risks-of-bias.md
│ │ │ └── validation-generalisability.md
│ │ ├── risks-of-bias.md
│ │ ├── sdpw/
│ │ │ ├── pd-sdp-private-learning.md
│ │ │ ├── pd-sdp-sensitive-code.md
│ │ │ ├── pd-sdp-sensitive-files.md
│ │ │ └── pd-sdp-trew.md
│ │ ├── stakeholders/
│ │ │ ├── persona/
│ │ │ │ ├── persona-contributors.md
│ │ │ │ └── persona-creation.md
│ │ │ └── persona.md
│ │ └── stakeholders.md
│ ├── references.bib
│ └── reproducible-research/
│ ├── binderhub/
│ │ ├── binderhub-build.md
│ │ ├── binderhub-compute.md
│ │ ├── binderhub-introduction.md
│ │ └── binderhub-resources.md
│ ├── binderhub.md
│ ├── case-studies/
│ │ └── case-study-statistical.md
│ ├── case-studies.md
│ ├── ci/
│ │ ├── ci-building-gh-actions.md
│ │ ├── ci-github-actions.md
│ │ ├── ci-options.md
│ │ ├── ci-practices.md
│ │ └── ci-resources.md
│ ├── ci.md
│ ├── code-documentation/
│ │ ├── code-documentation-code.md
│ │ ├── code-documentation-project.md
│ │ └── code-documentation-resources.md
│ ├── code-documentation.md
│ ├── code-quality/
│ │ ├── code-quality-naming.md
│ │ ├── code-quality-readability.md
│ │ ├── code-quality-resources.md
│ │ ├── code-quality-robust.md
│ │ ├── code-quality-style-formatting.md
│ │ └── code-quality-style.md
│ ├── code-quality.md
│ ├── code-reuse/
│ │ ├── code-reuse-details.md
│ │ ├── code-reuse-overview.md
│ │ └── code-reuse-packages.md
│ ├── code-reuse.md
│ ├── compendia.md
│ ├── licensing/
│ │ ├── licensing-checklist.md
│ │ ├── licensing-compatibility.md
│ │ ├── licensing-data.md
│ │ ├── licensing-documentation.md
│ │ ├── licensing-ethical-source.md
│ │ ├── licensing-floss.md
│ │ ├── licensing-hardware.md
│ │ ├── licensing-ip.md
│ │ ├── licensing-ml-case-studies.md
│ │ └── licensing-ml.md
│ ├── licensing.md
│ ├── make/
│ │ ├── make-appendix.md
│ │ ├── make-casestudy.md
│ │ ├── make-debugging.md
│ │ ├── make-examples.md
│ │ ├── make-resources.md
│ │ └── make-results.md
│ ├── make.md
│ ├── open/
│ │ ├── open-access.md
│ │ ├── open-checklist.md
│ │ ├── open-data.md
│ │ ├── open-hardware.md
│ │ ├── open-notebooks.md
│ │ ├── open-resources.md
│ │ ├── open-scholarship.md
│ │ └── open-source.md
│ ├── open.md
│ ├── overview/
│ │ ├── overview-barriers.md
│ │ ├── overview-benefit.md
│ │ ├── overview-definitions.md
│ │ └── overview-resources.md
│ ├── overview.md
│ ├── rdm/
│ │ ├── rdm-article.md
│ │ ├── rdm-care.md
│ │ ├── rdm-checklist.md
│ │ ├── rdm-cleaning.md
│ │ ├── rdm-data-curation.md
│ │ ├── rdm-data.md
│ │ ├── rdm-dmp.md
│ │ ├── rdm-elns.md
│ │ ├── rdm-fair.md
│ │ ├── rdm-find.md
│ │ ├── rdm-metadata.md
│ │ ├── rdm-methods.md
│ │ ├── rdm-personal.md
│ │ ├── rdm-pid.md
│ │ ├── rdm-repository.md
│ │ ├── rdm-resources.md
│ │ ├── rdm-sharing.md
│ │ ├── rdm-smp.md
│ │ ├── rdm-spreadsheets.md
│ │ ├── rdm-storage.md
│ │ ├── rdm-stories.md
│ │ └── rdm-visualisation.md
│ ├── rdm.md
│ ├── renv/
│ │ ├── renv-containers.md
│ │ ├── renv-options.md
│ │ ├── renv-package.md
│ │ ├── renv-resources.md
│ │ ├── renv-virtualmachine.md
│ │ └── renv-yaml.md
│ ├── renv.md
│ ├── reproducible-research.md
│ ├── reviewing/
│ │ ├── reviewing-checklist.md
│ │ ├── reviewing-motivation.md
│ │ ├── reviewing-recommend.md
│ │ ├── reviewing-resources.md
│ │ └── reviewing-workflow.md
│ ├── reviewing.md
│ ├── risk-assess/
│ │ ├── risk-assess-impact.md
│ │ └── risk-assess-resources.md
│ ├── risk-assess.md
│ ├── testing/
│ │ ├── testing-acceptance-regression.md
│ │ ├── testing-checklist.md
│ │ ├── testing-driven-development.md
│ │ ├── testing-exceptions.md
│ │ ├── testing-guidance.md
│ │ ├── testing-integrationtest.md
│ │ ├── testing-overview.md
│ │ ├── testing-resources.md
│ │ ├── testing-runtime.md
│ │ ├── testing-smoketest.md
│ │ ├── testing-systemtest.md
│ │ └── testing-unittest.md
│ ├── testing.md
│ ├── vcs/
│ │ ├── vcs-checklist.md
│ │ ├── vcs-data.md
│ │ ├── vcs-git-branches.md
│ │ ├── vcs-git-commit.md
│ │ ├── vcs-git-compare.md
│ │ ├── vcs-git-general.md
│ │ ├── vcs-git-in-research.md
│ │ ├── vcs-git-interactive.md
│ │ ├── vcs-git-merge.md
│ │ ├── vcs-git-summary.md
│ │ ├── vcs-git.md
│ │ ├── vcs-github.md
│ │ ├── vcs-personal-stories.md
│ │ ├── vcs-resources.md
│ │ ├── vcs-workflow-branches.md
│ │ └── vcs-workflow.md
│ └── vcs.md
├── lychee.toml
├── netlify.toml
├── release-workflow.md
├── tests/
│ ├── lorem-ipsums.py
│ ├── no-bad-latin.py
│ ├── pull_files.py
│ ├── release_workflow.py
│ ├── requirements.txt
│ ├── test-file-size.sh
│ ├── validate-all-contributorsrc.py
│ └── validate-dependabot.py
└── ways_of_working.md
================================================
FILE CONTENTS
================================================
================================================
FILE: .all-contributorsrc
================================================
{
"_comment": "This JSON file controls the behaviour of the all contributors bot. A description of the keys can be found here: https://allcontributors.org/docs/en/bot/configuration",
"files": [
"README.md",
"book/website/afterword/contributors/all-contributors.md"
],
"imageSize": 100,
"contributorsPerLine": 6,
"badgeTemplate": "[](#contributors)",
"skipCi": false,
"contributorsSortAlphabetically": true,
"projectName": "the-turing-way",
"projectOwner": "the-turing-way",
"repoType": "github",
"repoHost": "https://github.com",
"commitConvention": "none",
"commitType": "docs",
"types": {
"a11y": {
"symbol": "♿️",
"description": "Accessibility",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#accessibility-working-group"
},
"content": {
"symbol": "🖋",
"description": "Content",
"link": "https://book.the-turing-way.org"
},
"ideas": {
"symbol": "🤔",
"description": "Ideas, Planning, & Feedback",
"link": "https://github.com/the-turing-way/the-turing-way/issues?q=is%3Aissue%20state%3Aopen%20label%3Aidea-for-discussion"
},
"eventOrganizing": {
"symbol": "📋",
"description": "Event Organizing",
"link": "https://docs.google.com/spreadsheets/d/1WsIAUKgdIRRfd3h09ee2gc7sVmV2u1gEEh3L6u6L1MQ/edit?gid=577525947#gid=577525947,"
},
"infra": {
"symbol": "🚇",
"description": "Infrastructure (Hosting, Build-Tools, etc)",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#subprojects-infra-wg"
},
"tool": {
"symbol": "🔧",
"description": "Tools",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#subprojects-infra-wg"
},
"video": {
"symbol": "📹",
"description": "Videos",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#subprojects-infra-wg"
},
"maintenance": {
"symbol": "🚧",
"description": "Maintenance",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#subprojects-infra-wg"
},
"question": {
"symbol": "💬",
"description": "Answering Questions",
"link": "https://github.com/orgs/the-turing-way/discussions"
},
"talk": {
"symbol": "📢",
"description": "Talks",
"link": "https://github.com/the-turing-way/conferences"
},
"promotion": {
"symbol": "📣",
"description": "Promotion",
"link": "https://github.com/the-turing-way/conferences"
},
"translation": {
"symbol": "🌍",
"description": "Translation",
"link": "https://book.the-turing-way.org/afterword/subprojects.html#translation-and-localisation-working-group"
},
"platform": {
"symbol": "📦",
"description": "Packaging/porting to new platform",
"link": "https://jupyterbook.org"
},
"design": {
"symbol": "🎨",
"description": "Design",
"link": "https://book.the-turing-way.org"
},
"example": {
"symbol": "💡",
"description": "Examples",
"link": "https://book.the-turing-way.org"
},
"blog": {
"symbol": "📝",
"description": "Blogposts",
"link": "https://github.com/the-turing-way/newsletter"
},
"userTesting": {
"symbol": "📓",
"description": "User Testing",
"link": "https://book.the-turing-way.org"
},
"fundingFinding": {
"symbol": "🔍",
"description": "Funding Finding",
"link": "https://book.the-turing-way.org"
},
"projectManagement": {
"symbol": "📆",
"description": "Project Management",
"link": "https://book.the-turing-way.org"
},
"tutorial": {
"symbol": "✅",
"description": "Tutorials",
"link": "https://book.the-turing-way.org"
}
},
"contributors": [
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"name": "Rachael Ainsworth",
"avatar_url": "https://avatars3.githubusercontent.com/u/10600877?v=4",
"profile": "https://rainsworth.github.io",
"contributions": [
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},
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"profile": "http://www.tarekallamjr.com",
"contributions": [
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},
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},
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},
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},
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"profile": "https://github.com/yaochengchen",
"contributions": [
"content"
]
},
{
"login": "BuildingTech24",
"name": "BuildingTech24",
"avatar_url": "https://avatars.githubusercontent.com/u/257283328?v=4",
"profile": "https://github.com/BuildingTech24",
"contributions": [
"review"
]
},
{
"login": "xchen101",
"name": "Xiaoli Chen",
"avatar_url": "https://avatars.githubusercontent.com/u/3393596?v=4",
"profile": "https://github.com/xchen101",
"contributions": [
"content"
]
},
{
"login": "mitre88",
"name": "Dr Alex Mitre",
"avatar_url": "https://avatars.githubusercontent.com/u/30060514?v=4",
"profile": "https://github.com/mitre88",
"contributions": [
"bug"
]
},
{
"login": "priya-gitTest",
"name": "Priyanka O",
"avatar_url": "https://avatars.githubusercontent.com/u/21082240?v=4",
"profile": "https://github.com/priya-gitTest",
"contributions": [
"content"
]
},
{
"login": "perashanid",
"name": "Shanid Sajjatuz Islam",
"avatar_url": "https://avatars.githubusercontent.com/u/155494150?v=4",
"profile": "http://shanidsajjatuz.is-a.dev",
"contributions": [
"content"
]
}
]
}
================================================
FILE: .github/ISSUE_TEMPLATE/01_bug_report.yml
================================================
name: "\U0001F41B Bug report"
description: Create a report to help us repair something that is currently broken
title: "[BUG]:"
labels: ["bug"]
body:
- type: markdown
attributes:
value: |
Use this template to raise issues about viewing or building _The Turing Way_.
If you would like to raise an issue about fixing typos, or formatting issues in chapters, please use the [Editor's Issue template](https://github.com/alan-turing-institute/the-turing-way/issues/new?assignees=&labels=&template=EDITOR_ISSUE_TEMPLATE.yml).
- type: textarea
attributes:
label: Description
description: Use this section to clearly and concisely describe the bug.
validations:
required: true
- type: textarea
attributes:
label: Expected behavior
description: Tell us what you thought would happen.
- type: textarea
attributes:
label: Actual behaviour
description: Tell us what actually happens.
- type: textarea
attributes:
label: How to reproduce
description: Use this section to describe the steps that a user would take to experience this bug.
placeholder: |
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error -->
- type: textarea
attributes:
label: Your personal set up
description: Tell us a little about the system you're using or tested this bug in.
value: |
- **Operating System**:
- **Browser**:
- type: textarea
attributes:
label: Dependencies
description:
If you have found a bug when building the book, please give a list of the dependencies you are using.
You can generate a list of this using `pip freeze`.
- type: textarea
attributes:
label: Log messages
description:
Please include any relevant log or error messages here.
You may also include screenshots.
================================================
FILE: .github/ISSUE_TEMPLATE/02_edit_a_chapter.yml
================================================
name: "\U0001F50D Edit a chapter"
description: An existing chapter needs to be updated
title: "[TO EDIT]: chapter/subchapter"
body:
- type: markdown
attributes:
value: |
This template will guide you through the steps necessary for you to propose a chapter/subchapter to edit, review or restructure.
Please fill in the title above but do not remove the text "[TO EDIT]".
- type: textarea
id: summary
attributes:
label: Summary
description: |
Please provide a detailed description of the chapter/subchapter you propose to edit, review or restructure.
Please provide as much context as possible and link to related issues and/or pull requests.
Providing links to sections you're referencing for clarity is highly encouraged.
validations:
required: true
- type: textarea
id: todo
attributes:
label: What needs to be done?
description: |
Please comment on the overall structure of the file.
Your response can cover the questions such as,
"Do sections need clearer headings? Are there any technical terms that might not be understood? Is something missing that is worth discussing before adding?"
placeholder: Please use bullets (* or -) and filled checkboxes ([x]) as necessary.
validations:
required: true
- type: textarea
id: helpers
attributes:
label: Who can help?
description: |
If you know the original author the chapter/section, it may be useful to tag them here for their input.
placeholder: |
- …
- …
- type: checkboxes
id: updates
attributes:
label: Updates
description: |
Please update the initial issue with important updates (for example, actions or decisions taken) regularly so that all the important information is available at one glance.
You may use the checklist here to get started, feel free to modify this list.
options:
- label: "First set of edits to chapter/subchapter"
- label: "Proofread"
- label: "Request reviews"
- label: "Address reviews"
- label: "Merge to main branch"
================================================
FILE: .github/ISSUE_TEMPLATE/03_new_chapter.yml
================================================
name: "\U0001F4D6 New chapter"
description: Propose a new chapter
title: "[CHAPTER]: chapter"
labels: [book]
body:
- type: markdown
attributes:
value: |
Please complete the following sections to propose a new chapter.
- type: input
id: title
attributes:
label: Title
description: |
Your proposed chapter's title.
validations:
required: true
- type: input
id: guide
attributes:
label: Guide
description: |
Which Guide will your chapter be a part of? Please reference the [book](https://the-turing-way.netlify.app/welcome.html)'s table of contents to see which Guides make up the book.
validations:
required: true
- type: input
id: branch
attributes:
label: Draft
description: |
Please provide a link to your draft.
This might be in a document such as a hackmd or a new file on your GitHub branch.
If you already have a PR you can update the PR with a keyword to link directly to this issue - see instructions [here](https://docs.github.com/en/issues/tracking-your-work-with-issues/linking-a-pull-request-to-an-issue).
You can provide this later if you haven't started yet!
- type: textarea
id: summary
attributes:
label: Summary of proposed chapter
description: |
Please provide a detailed description of the chapter you are proposing.
- What is the purpose of your chapter?
- Why are you proposing it?
validations:
required: true
- type: textarea
id: resources
attributes:
label: Resources
description: List and describe any external resources that may be helpful when writing the chapter.
placeholder: |
- …
- …
- type: textarea
id: who_can_help
attributes:
label: Who can help?
description: Suggest people who can help.
placeholder: |
- …
- …
- type: checkboxes
id: updates
attributes:
label: Updates
description: Please comment on this issue with updates so that all the important information is available at a glance. You may use the checklist here to get started or create a new checklist in the comments.
options:
- label: Write chapter outline
- label: Add material to the chapter
- label: Combine materials into a readable chapter
- label: Proofread
- label: Create PR and link in the comments
- label: Request reviews
- label: Address reviews
- label: Merge to main branch
- type: markdown
attributes:
value: "**When you are ready to create a pull request for your chapter please don't forget to add a link in the comments on this issue.**"
================================================
FILE: .github/ISSUE_TEMPLATE/04_request_translation.yml
================================================
name: "\U0001F4D1 Request Translation"
description: Propose a translation
title: "[TRANSLATION]:"
body:
- type: markdown
attributes:
value: |
Use this template to propose a tnraslation.
- type: textarea
attributes:
label: Summary
description: |
Please provide a detailed description of the language/languages that you want to translate to and the chapters that you would like to translate.
Please provide as much context as possible and link to related issues and/or pull requests.
Providing links to sections you're referencing for clarity is highly encouraged.
validations:
required: true
- type: input
attributes:
label: Target language
description: What is/are the target language/languages?
validations:
required: true
- type: checkboxes
attributes:
label: Translation options
options:
- label: I wish to be manager in Crowdin for entries in this language.
- label: I will only proofread translation for this language.
- label: I have a local translation to be uploaded to the Translation Memory?
- type: textarea
attributes:
label: Chapters to translation
description: Which chapters do you want to translate?
placeholder: |
- …
- …
- type: textarea
id: who_can_help
attributes:
label: Who can help?
description: Suggest people who can help.
placeholder: |
- …
- …
================================================
FILE: .github/ISSUE_TEMPLATE/05_general.yml
================================================
name: "\u2728 General"
description: Have a different idea?
body:
- type: markdown
attributes:
value: |
Please complete the following sections when you open an issue.
- type: textarea
attributes:
label: Summary
description: |
Please provide a detailed description of the change or addition you are proposing, or the question you're asking.
Please provide as much context as possible and link to related issues and/or pull requests.
validations:
required: true
- type: textarea
attributes:
label: What needs to be done?
description:
We suggest using bullets (indicated by * or -) and filled checkboxes [x] here.
placeholder: |
- [ ] …
- [ ] …
- type: textarea
attributes:
label: Who can help?
description: |
Suggest people who can help.
placeholder: |
- …
- …
================================================
FILE: .github/ISSUE_TEMPLATE/config.yml
================================================
contact_links:
- name: "\U0001F525 Suggest a Fireside Chat"
url: https://github.com/the-turing-way/fireside-chats/issues/new?template=12_fireside_chat_checklist.md
about: Resources and checklist for giving a talk about the Turing Way
- name: "\U0001F4E3 Give a talk"
url: https://github.com/the-turing-way/conferences/issues/new?assignees=&labels=talks-and-workshops%2Cnewsletter&projects=&template=give_a_talk.yml&title=%5BTALK%5D+%3Ctitle%3E
about: Resources and checklist for giving a talk about the Turing Way
- name: "\u2615 Collaboration cafe"
url: https://book.the-turing-way.org/community-handbook/community-calls/community-calls-collabcafe/
about: Sign up for mentored sprints and co-working sessions with Turing Way community members
- name: "\U0001F5E3 All other questions and general chat"
url: https://slack.the-turing-way.org
about: Chat with the Turing Way community on Slack
================================================
FILE: .github/PULL_REQUEST_TEMPLATE.md
================================================
<!--
Please complete the following sections when you submit your pull request. You are encouraged to keep this top level comment box updated as you develop and respond to reviews. Note that text within html comment tags will not be rendered.
-->
### Checklist
- [ ] I agree to follow _The Turing Way_'s [code of conduct](https://book.the-turing-way.org/community-handbook/coc/)
- [ ] I have read the [contribution guide](https://book.the-turing-way.org/community-handbook/contributing/)
- [ ] I have read the [style guide](https://book.the-turing-way.org/community-handbook/style/)
### Summary
<!-- Describe the problem you're trying to fix in this pull request. Please reference any related issue and use fixes/close to automatically close them, if pertinent. For example: "Fixes #58", or "Addresses (but does not close) #238". -->
Fixes #<NUM>
*Lorem ipsum dolor sit amet, consectetur adipiscing.*
### List of changes proposed in this PR (pull-request)
<!-- We suggest using bullets (indicated by * or -) and filled checkboxes [x] here -->
* *Lorem ipsum dolor sit amet, consectetur adipiscing.*
* *Lorem ipsum dolor sit amet, consectetur adipiscing.*
### What should a reviewer concentrate their feedback on?
<!-- This section is particularly useful if you have a pull request that is still in development. You can guide the reviews to focus on the parts that are ready for their comments. We suggest using bullets (indicated by * or -) and filled checkboxes [x] here -->
- [ ] *Lorem ipsum dolor sit amet, consectetur adipiscing.*
- [ ] Everything looks ok?
### Acknowledging contributors
<!-- Please select the correct box -->
- [ ] All contributors to this pull request are already named in the [table of contributors](https://github.com/the-turing-way/the-turing-way/blob/main/README.md#contributors) in the README file.
- [ ] The following people should be added to the [table of contributors](https://github.com/the-turing-way/the-turing-way/blob/main/README.md#contributors) in the README file: <!-- replace this text with the GitHub IDs of any new contributors -->
================================================
FILE: .github/config.yml
================================================
# Configuration for welcome - https://github.com/behaviorbot/welcome
# Configuration for new-issue-welcome - https://github.com/behaviorbot/new-issue-welcome
# Comment to be posted to on first time issues
newIssueWelcomeComment: >
[](https://zenodo.org/record/3695300)
🎉 Welcome to _The Turing Way_! 🎉
We're really excited to have your input into the project! 💖
<br>If you haven't done so already, please make sure you check out our [Contributing Guidelines](https://github.com/the-turing-way/the-turing-way/blob/main/CONTRIBUTING.md) and [Code of Conduct](https://github.com/the-turing-way/the-turing-way/blob/main/CODE_OF_CONDUCT.md).
If you need to connect more synchronously with members of _The Turing Way_ community, please feel free to chat with us in our [Slack workspace](https://join.slack.com/t/theturingway/shared_invite/zt-fn608gvb-h_ZSpoA29cCdUwR~TIqpBw), or you can join our [Collaboration Cafe](https://the-turing-way.netlify.app/community-handbook/coworking/coworking-collabcafe.html) for mentored contribution or co-working.
# Configuration for new-pr-welcome - https://github.com/behaviorbot/new-pr-welcome
# Comment to be posted to on PRs from first time contributors in your repository
newPRWelcomeComment: >
[](https://zenodo.org/record/3695300)
💖 Thanks for opening this pull request! 💖
_The Turing Way_ community really appreciates your time and effort to contribute to the project.
Please make sure you have read our [Contributing Guidelines](https://github.com/the-turing-way/the-turing-way/blob/main/CONTRIBUTING.md) and filled in our pull request template to the best of your ability.
If you are submitting a new chapter, here are some things that will help get your pull request across the finish line! 🏁
- Check you have removed all _lorem ipsums_ from the chapter template (if you used it)
- Check for any abbreviations or latin phrases (such as "e.g." or "i.e.") in your writing. See our [style guide](https://github.com/the-turing-way/the-turing-way/blob/main/CONTRIBUTING.md#writing-style) for more information on this topic.
- Make sure you have added your new chapter to the [Table of Contents](https://github.com/the-turing-way/the-turing-way/blob/main/book/website/myst.yml)
<br>We have Continuous Integration tests that check the writing style and will help you track down any slip-ups ♻
The Netlify bot will also comment with a preview of the book with your additions so you can see how it will look once it's merged! 🎉
<br>We get a lot of pull requests on this repo, so please be patient and we will get back to you as soon as we can.
If we don't acknowledge this pull request after 7 days, feel free to chat to us about it in our [Slack workspace](https://join.slack.com/t/theturingway/shared_invite/zt-fn608gvb-h_ZSpoA29cCdUwR~TIqpBw).
# Configuration for first-pr-merge - https://github.com/behaviorbot/first-pr-merge
# Comment to be posted to on pull requests merged by a first time user
firstPRMergeComment: >
[](https://zenodo.org/record/3695300)
Congrats on merging your first pull request! 🎉
We here at _The Turing Way_ are proud of you! 💖
Thank you so much for your contribution 🎁
================================================
FILE: .github/dependabot.yaml
================================================
version: 2
updates:
# Maintain dependencies for GitHub Actions in workflow files
# By default, the directory to be checked is .github/workflows for the github-actions
# package ecosystem
# ref: https://docs.github.com/en/code-security/dependabot/working-with-dependabot/keeping-your-actions-up-to-date-with-dependabot
- package-ecosystem: "github-actions"
directory: "/"
schedule:
interval: "monthly"
groups:
# Group all GHA updates together into single PR (to avoid desync in related actions e.g. upload-artifact, download-artifact)
# ref: https://docs.github.com/en/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file#groups
actions:
patterns:
- "*"
# "pip" is the package ecosystem value for pip-compile
# https://docs.github.com/en/code-security/reference/supply-chain-security/dependabot-options-reference#package-ecosystem-
- package-ecosystem: "pip"
directory: "/book/"
schedule:
interval: "monthly"
groups:
# Group all dependencies into a single PR
dependencies:
patterns:
- '*'
# Ignore patch updates
ignore:
- dependency-name: "*"
update-types: ["version-update:semver-patch"]
================================================
FILE: .github/in-solidarity.yml
================================================
rules:
master:
level: warning
slave:
level: failure
whitelist:
level: failure
blacklist:
level: failure
================================================
FILE: .github/release-drafter.yml
================================================
template: |
## The Turing Way: A handbook for reproducible, ethical and collaborative research
[The Turing Way March 2022](https://github.com/the-turing-way/the-turing-way/releases/tag/v1.0.2) [Latest](https://github.com/the-turing-way/the-turing-way/releases/latest)
The Turing Way is an open source community-driven guide to reproducible, ethical, inclusive and collaborative data science. The Turing Way book is collaboratively developed by its diverse community of researchers, learners, educators, and other stakeholders.
The Turing Way project is openly developed and any and all questions, comments and recommendations are welcome at our github repository: https://github.com/the-turing-way/the-turing-way. In 2020, the project underwent a major overhaul categorising chapters into 5 guides on reproducible research, project design, collaboration, communication and ethical research. Additionally, we added a community handbook to document all the practices designed and implemented towards the development of the project and community.
This release in 2021 includes additional chapters developed by our contributors across five guides and the community handbook. In addition, all the project documents from the project are provided as they appear on The Turing Way GitHub repository including the Zenodo metadata: https://github.com/the-turing-way/the-turing-way.
Release log
v1.0.3: Zenodo metadata information and additional chapters from Book Dash May 2022
v1.0.2: Zenodo metadata information and additional chapters since Book Dash November 2021
v1.0.1: Zenodo metadata information and additional chapters.
v1.0.0: Five guide expansion of The Turing Way with a community handbook
v0.0.4: Continuous integration chapter merged to main.
v0.0.3: Reproducible environments chapter merged to main.
v0.0.2: Version control chapter merged to main.
v0.0.1: Reproducibility chapter merged to main.
Full Changelog: https://github.com/the-turing-way/the-turing-way/compare/v1.0.1...v1.0.2 (Previous release: https://github.com/the-turing-way/the-turing-way/compare/v0.0.3...v1.0.1)
$PREVIOUS_TAG
================================================
FILE: .github/workflows/accessibility-alt-text-bot.yml
================================================
name: Accessibility-alt-text-bot
on:
issues:
types: [opened, edited]
pull_request:
types: [opened, edited]
issue_comment:
types: [created, edited]
discussion:
types: [created, edited]
discussion_comment:
types: [created, edited]
permissions:
issues: write
pull-requests: write
discussions: write
jobs:
accessibility_alt_text_bot:
name: Check alt text is set on issue or pull requests
runs-on: ubuntu-latest
if: ${{ github.event.issue || github.event.pull_request || github.event.discussion }}
steps:
- name: Get action 'github/accessibility-alt-text-bot'
uses: github/accessibility-alt-text-bot@v1.7.3
================================================
FILE: .github/workflows/ci.yml
================================================
name: CI
# run on pull requests to main
on:
pull_request:
branches:
- main
# set the default shell to bash for all jobs
# this is important for the windows OS!
defaults:
run:
shell: bash
jobs:
build-jb:
name: Build
strategy:
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python_version: ["3.13"]
fail-fast: false # Don't cancel all jobs if one fails
runs-on: ${{ matrix.os }}
permissions:
issues: write
pull-requests: write
steps:
- name: Extract the PR number from the ref
# only for pull requests from the all-contributors bot
if: ${{ contains(github.head_ref, 'all-contributors') && contains(matrix.os, 'ubuntu') }}
id: pr_number
run: |
if [[ ${{ github.ref }} =~ [0-9]+ ]]; then
echo "pr_num=${BASH_REMATCH[0]}" >> "$GITHUB_OUTPUT"
else
exit 1
fi
- name: Post a comment about skipping this workflow
# only for pull requests from the all-contributors bot
if: ${{ contains(github.head_ref, 'all-contributors') && contains(matrix.os, 'ubuntu') }}
uses: peter-evans/create-or-update-comment@v5
with:
token: ${{ secrets.GITHUB_TOKEN }}
issue-number: ${{ steps.pr_number.outputs.pr_num }}
body: >-
Hello human reviewer! I have marked the CI build for this PR as
passed because it has come from an `all-contributors` branch - which
we do not want to build - but allows branch protection rules to pass.
Please check that this PR is indeed related to the `all-contributors`
bot. If not, the branch may need renaming so that the tests trigger
correctly.
- name: Checkout-repository
# ignore pull requests from the all-contributors bot
if: ${{ !contains(github.head_ref, 'all-contributors') }}
uses: actions/checkout@v6
- name: Setup Python ${{ matrix.python_version }}
# ignore pull requests from the all-contributors bot
if: ${{ !contains(github.head_ref, 'all-contributors') }}
uses: actions/setup-python@v6
with:
python-version: ${{ matrix.python_version }}
- name: Install dependencies
# ignore pull requests from the all-contributors bot
if: ${{ !contains(github.head_ref, 'all-contributors') }}
run: make deps
working-directory: ./book
- name: Build the book
# ignore pull requests from the all-contributors bot
if: ${{ !contains(github.head_ref, 'all-contributors') }}
working-directory: ./book
run: make ci
- name: Upload html output as artifact
# ignore pull requests from the all-contributors bot
if: contains(matrix.os, 'ubuntu') && !contains(github.head_ref, 'all-contributors')
uses: actions/upload-artifact@v7
with:
name: book-html-${{ github.run_id }}
path: ./book/website/_build/html/
offline-link-check:
name: Link Check
needs: build-jb
if: ${{ !contains(github.head_ref, 'all-contributors') }}
runs-on: ubuntu-latest
steps:
# We only need the lychee config file from the repository
- name: Checkout lychee config file from repository
uses: actions/checkout@v6
with:
sparse-checkout: |
lychee.toml
sparse-checkout-cone-mode: false
- name: Ensure destination folder exists
run: |
mkdir -p ./book/website/_build/html
- name: Download book html files from artifact
uses: actions/download-artifact@v8
with:
name: book-html-${{ github.run_id }}
path: ./book/website/_build/html/
- name: Check offline links
uses: lycheeverse/lychee-action@v2.8.0
with:
args: --config './lychee.toml' --no-progress --offline --root-dir "$GITHUB_WORKSPACE/book/website/_build/html/" 'book/website/_build/html/**/*.html'
fail: true
env:
GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} # Use runners GitHub token to avoid rate limiting
================================================
FILE: .github/workflows/crowdin-contributors.yml
================================================
name: Crowdin Contributors Action
on:
schedule:
- cron: '0 0 * * 1' # 'https://crontab.guru/#0_0_*_*_1'
# To manually run this workflow
workflow_dispatch:
jobs:
crowdin-contributors:
runs-on: ubuntu-latest
# This environment contains secrets specific to crowdin and only workflows
# listing this environment can use them
environment: crowdin
steps:
- name: Checkout
uses: actions/checkout@v6
- name: Generate Crowdin Contributors table
uses: andrii-bodnar/action-crowdin-contributors@v3.2.0
with:
contributors_per_line: 5
max_contributors: 10000
image_size: 100
min_words_contributed: 1
include_languages: true
placeholder_start: <!-- CROWDIN-CONTRIBUTORS-LIST:START -->
placeholder_end: <!-- CROWDIN-CONTRIBUTORS-LIST:END -->
crowdin_project_link: https://turingway.crowdin.com/turing-way
files: |
README.md
book/website/afterword/contributors/translators.md
env:
CROWDIN_PROJECT_ID: 1
CROWDIN_PERSONAL_TOKEN: ${{ secrets.CROWDIN_PERSONAL_TOKEN }}
CROWDIN_ORGANIZATION: turingway
- name: Create Pull Request
uses: peter-evans/create-pull-request@v8
with:
token: ${{ secrets.CROWDIN_ACTION_TOKEN }}
title: Update Crowdin Contributors table
body: By [action-crowdin-contributors](https://github.com/andrii-bodnar/action-crowdin-contributors) GitHub action
commit-message: Update Crowdin Contributors table
committer: Crowdin Bot <support+bot@crowdin.com>
branch: crowdin-contributors/patch
team-reviewers: |
translation
================================================
FILE: .github/workflows/external_link_check.yml
================================================
name: External Link Check
on:
workflow_dispatch:
schedule:
- cron: "0 0 * * MON"
jobs:
external-link-check:
name: External Link Check
runs-on: ubuntu-latest
steps:
- name: Checkout-repository
uses: actions/checkout@v6
- name: Setup Python
uses: actions/setup-python@v6
with:
python-version: "3.13"
- name: Install dependencies
run: make deps
working-directory: ./book
- name: Build Jupyter-Book
run: make book
working-directory: ./book
- name: Restore lychee cache
uses: actions/cache@v5
with:
path: .lycheecache
key: cache-lychee-${{ github.sha }} # save cache using commit sha
restore-keys: cache-lychee- # restore latest cache (not a specific commit)
- name: Check links
uses: lycheeverse/lychee-action@v2
with:
args: --config './lychee.toml' --no-progress --root-dir "$GITHUB_WORKSPACE/book/website/_build/html/" 'book/website/_build/html/**/*.html'
fail: false
env:
GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}} # Use runner's GitHub token to avoid rate limiting
- name: Concatenate Lychee output with issue header
run: cat .github/workflows/resources/external_link_check_header.md lychee/out.md > issue_text.md
- name: Update Issue
uses: peter-evans/create-issue-from-file@v6
with:
title: Broken links
issue-number: 3171
content-filepath: issue_text.md
token: ${{secrets.GITHUB_TOKEN}}
labels: |
infrastructure
caretaking
================================================
FILE: .github/workflows/lorem-ipsums.yml
================================================
# Give your test a name!
name: Check for Lorem Ipsums
# Decide when to run the tests
#
# This configuration sets the test to run on pushes to main
# and on pull requests that are opened to main
on:
push:
branches:
- main
pull_request:
branches:
- main
# Set up the Continuous Integration job
jobs:
lorem-ipsums:
if: (github.event.pull_request) && !contains(github.head_ref, 'all-contributors')
# Run on the latest Ubuntu distribution
runs-on: ubuntu-latest
# This section collects together the steps involved in running the test
steps:
# Checkout the repository. Relies on another GH-Action.
- uses: actions/checkout@v6
# Set up the Python version. Relies on another GH-Action.
- name: Setup Python 3.13
uses: actions/setup-python@v6
with:
python-version: "3.13"
# Install Python dependencies
- name: Install dependencies
working-directory: ./tests
run: |
python -m pip install --upgrade pip
python -m pip install -r requirements.txt
# Run a Python script
- name: Run Python script to check for rogue "Lorem ipsums" - Pull Request
working-directory: ./tests
if: github.event.pull_request
run: |
python lorem-ipsums.py \
--pull-request ${{ github.event.pull_request.number }} \
--github-token ${{ secrets.GITHUB_TOKEN }}
- name: Run Python script to check for rogue "Lorem ipsums" - Main branch
working-directory: ./tests
if: github.event_name == 'push' && github.ref == 'refs/heads/main'
run: |
python lorem-ipsums.py
================================================
FILE: .github/workflows/no-bad-latin.yml
================================================
# Give your test a name!
name: Check for Latin Phrases
# Decide when to run the tests
#
# This configuration sets the test to run on pushes to main
# and on pull requests that are opened to main
on:
push:
branches:
- main
pull_request:
branches:
- main
# Set up the Continuous Integration job
jobs:
latin-phrases:
if: (github.event.pull_request) && !contains(github.head_ref, 'all-contributors')
# Run on the latest Ubuntu distribution
runs-on: ubuntu-latest
# This section collects together the steps involved in running the test
steps:
# Checkout the repository. Relies on another GH-Action.
- uses: actions/checkout@v6
# Set up the Python version. Relies on another GH-Action.
- name: Setup Python 3.13
uses: actions/setup-python@v6
with:
python-version: "3.13"
# Install Python dependencies
- name: Install dependencies
working-directory: ./tests
run: |
python -m pip install --upgrade pip
python -m pip install -r requirements.txt
# Run a Python script
- name: Run Python script to check for latin phrases - Main branch
working-directory: ./tests
if: github.event_name == 'push' && github.ref == 'refs/heads/main'
run: |
python no-bad-latin.py
- name: Run Python script to check for latin phrases - Pull Request
working-directory: ./tests
if: github.event.pull_request
run: |
python no-bad-latin.py --pull-request ${{ github.event.pull_request.number }}
================================================
FILE: .github/workflows/release-drafter.yml
================================================
name: Release Drafter
on:
workflow_dispatch:
push:
branches:
- main
jobs:
update-release-draft:
runs-on: ubuntu-latest
steps:
- name: Draft a new release
uses: release-drafter/release-drafter@v7
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This might depend on how the github token is set up in the project as an environment variable
================================================
FILE: .github/workflows/release-workflow.yml
================================================
name: ReleaseWorkflow
on:
workflow_dispatch:
# schedule:
# # minute (0 - 59), hour (0 - 23), day of month (1 - 31), month(1 - 12 or JAN-DEC), day of week (0 - 6 or SUN-SAT)
# - cron: '0 0 25 */2 *' # Do we want it to run at the start or end of every month?
jobs:
release-workflow:
runs-on: ubuntu-latest
steps:
- name: Checkout branch
uses: actions/checkout@v6
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install ruamel.yaml
- name: Update CITATION.cff file
working-directory: ./tests
run: |
python release_workflow.py
- name: Validate a CITATION.cff from a subdirectory
uses: citation-file-format/cffconvert-github-action@2.0.0
with:
args: "--infile ./CITATION.cff --validate"
- name: Convert CITATION.cff to Zenodo metadata format
uses: citation-file-format/cffconvert-github-action@2.0.0
with:
args: "--infile ./CITATION.cff --format zenodo --outfile ./.zenodo.json"
- name: Commit changes and create a Pull Request
uses: peter-evans/create-pull-request@v8
with:
add-paths: .zenodo.json, CITATION.cff
commit-message: "🤖 Update citation.cff and .zenodo.json"
title: "[automated-pr] Update citation.cff and .zenodo.json"
branch: release-workflow-bot
delete-branch: true
body: |
Update citation.cff and generate Zenodo metadata
- Updated by changing version and date-released in Citation.cff then running cffconvert to generate new Zenodo metadata file.
labels: |
automated-pr-release-workflow
author: "CI User <ci-user@github.local>"
committer: "CI User <ci-user@github.local>"
================================================
FILE: .github/workflows/resources/external_link_check_header.md
================================================
# Broken Links
**This is an automated issue created in a weekly continuous integration job 🤖.**
This issue contains a list of links external to The Turing Way that appeared to be broken when the check was last run.
**The conversation on this issue has been locked.**
This is because the list of broken links will change whenever the job is run, so this is not a good place to discuss particular links.
## Understanding the Errors
### Locating Errors
Errors are grouped by the output html pages they appear in.
The paths of these pages after `book/website/_build/html` correspond to their source Markdown files.
For example, `book/website/_build/html/reproducible-research/vcs/vcs-workflow.html` corresponds to `book/website/reproducible-research/vcs/vcs-workflow.md`.
Broken links can be fixed in the Markdown file.
### False Negatives
The list of error **will contain false negatives**.
Some domains will interpret the link checker as a possible denial of service attack, especially if it makes multiple requests.
Others may require authentication for particular pages.
The link checker may then be unable to verify that certain links works.
If certain domains are repeatedly producing false negatives they can be ignored by adding an entry to the `exclude` list in the [Lychee configuration file](https://github.com/the-turing-way/the-turing-way/blob/main/lychee.toml).
### Link Status
Each failing link is presented with its status which is either a string like `ERR`, `TIMEOUT` or a HTTP response status code like `404`.
Mozilla has a [guide to HTTP response codes](https://developer.mozilla.org/en-US/docs/Web/HTTP/Status) which can help explain the codes in the list.
Here are some rules of thumb.
These are quite likely to be false negatives,
- 403
- TIMEOUT
These are quite likely to be genuine problems,
- 404
- ERR
- 50? (500, 501, 502, _etc._)
================================================
FILE: .github/workflows/test-file-size.yml
================================================
# Give your test a name!
name: TestFileSizes
# Decide when to run the tests
#
# This configuration sets the test to run on pushes to main
# and on pull requests that are opened to main
on:
push:
branches:
- main
pull_request:
branches:
- main
# Set up the Continuous Integration job
jobs:
testfilesizes:
# Run on the latest Ubuntu distribution
runs-on: ubuntu-latest
# This section collects together the steps involved in running the test
steps:
# Checkout the repository. Relies on another GH-Action.
- uses: actions/checkout@v6
# Run the script to check file sizes
- name: Check for large files
run: |
./tests/test-file-size.sh
================================================
FILE: .github/workflows/validate-all-contributorsrc.yml
================================================
name: Validate All Contributors file
on:
push:
branches:
- main
pull_request:
paths:
- ".all-contributorsrc"
- "tests/validate-all-contributorsrc.py"
jobs:
validate:
name: Validate all-contributorsrc
runs-on: ubuntu-latest
steps:
- name: Checkout-repository
uses: actions/checkout@v6
- name: Setup Python
uses: actions/setup-python@v6
with:
python-version: "3.13"
- name: Install dependencies
working-directory: ./tests/
run: pip install -r requirements.txt
- name: Run validation script
working-directory: ./tests/
run: python3 validate-all-contributorsrc.py
================================================
FILE: .github/workflows/validate-dependabot.yml
================================================
name: Validate Dependabot configuration
on:
push:
branches:
- main
pull_request:
paths:
- ".github/dependabot.yaml"
- "tests/validate-dependabot.py"
jobs:
validate:
name: Validate Dependabot configuration
runs-on: ubuntu-latest
steps:
- name: Checkout-repository
uses: actions/checkout@v6
- name: Setup Python
uses: actions/setup-python@v6
with:
python-version: "3.13"
- name: Install dependencies
working-directory: ./tests/
run: pip install -r requirements.txt
- name: Run validation script
working-directory: ./tests/
run: python3 validate-dependabot.py
================================================
FILE: .github/workflows/validate_citation.yml
================================================
name: Validate citation file
on:
push:
branches:
- main
pull_request:
paths:
- CITATION.cff
jobs:
validate:
name: "validate"
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v6
- name: Validate CITATION.cff
uses: citation-file-format/cffconvert-github-action@2.0.0
with:
args: "--validate"
================================================
FILE: .github/workflows/validate_issue_templates.yml
================================================
name: Validate GitHub Issue templates
on:
push:
branches:
- main
pull_request:
paths:
- ".github/ISSUE_TEMPLATE/**"
workflow_dispatch:
jobs:
validate:
name: Validate GitHub Issue templates
runs-on: ubuntu-latest
steps:
- name: Checkout-repository
uses: actions/checkout@v6
- name: Setup Python
uses: actions/setup-python@v6
with:
python-version: "3.13"
- name: Install dependencies
run: pipx install check-jsonschema
- name: Validate templates
working-directory: .github/ISSUE_TEMPLATE/
run: |
check-jsonschema --verbose --schemafile https://json.schemastore.org/github-issue-forms.json ./??_*.yml
================================================
FILE: .github/workflows/yamllint.yaml
================================================
name: Lint and Validate YAML files
on:
pull_request:
paths:
- "**.yaml"
- "**.yml"
push:
branches:
- main
jobs:
yamllint:
runs-on: ubuntu-latest
steps:
- name: Checkout repo
uses: actions/checkout@v6
- name: Setup Python 3.10
uses: actions/setup-python@v6
with:
python-version: "3.10"
- name: Install yamllint via pip
run: |
python -m pip install yamllint
# This command automatically reads in the .yamllint config file
- name: Run yamllint on all files in the repo
run: |
yamllint -f colored .
================================================
FILE: .gitignore
================================================
# Project management files that should not be in public VC
.secrets/*
# OS dependent metadata files
.DS_Store
# Large, binary files
workshops/boost-research-reproducibility-binder/workshop-presentations/*pptx
# Compiled files
**/__pycache__/
# IDE configs
.vscode/settings.json
.Rproj.user
.idea
# Python virtual environments
venv/
env/
================================================
FILE: .yamllint
================================================
# Learn about yamllint configuration here
# https://yamllint.readthedocs.io/en/stable/configuration.html
#
# Learn about yamllint rules here
# https://yamllint.readthedocs.io/en/stable/rules.html
---
extends: relaxed
rules:
line-length: disable
================================================
FILE: .zenodo.json
================================================
{
"creators": [
{
"name": "The Turing Way Community"
}
],
"description": "This is the most recent release of the main repository of The Turing Way Book",
"license": {
"id": "CC-BY-4.0"
},
"publication_date": "2025-04-14",
"title": "The Turing Way handbook for reproducible, ethical and collaborative research",
"version": "1.2.3"
}
================================================
FILE: ACCESSIBILITY.md
================================================
# Accessibility Policy of The Turing Way Community
Within _The Turing Way_ community, we define accessibility practices as a set of community-wide, behavioural, social, and technical decisions that can be taken to ensure that all are welcome and are able to enter and participate in research, data-driven processes, communities and events despite any barriers for access.
While accessibility is commonly understood with respect to disability, we – meaning _The Turing Way_ community – define accessibility as giving access to everyone, with specific attention given to ensuring proper access for groups of people that encounter different barriers for participation. Barriers may be anything related to, including, and extending beyond the following:
- Age
- Disability
- Ethnicity and race
- Family
- Language (written and/or spoken)
- Geography
- Nationality
- Religion, faith and belief
- Sex and gender
- Sexual orientation
- Socioeconomic status
- Technical or disciplinary background
- Mental health
- Digital barriers (such as connectivity, computational capacity, and design)
We recognise the complex and interlinking ways in which intersectionality affects identity, and thereby, access or inclusion within any community project like _The Turing Way_. So in this sense, our accessibility practices may overlap with practices that enable inclusion more broadly within any community.
In developing this policy, we aim to draw from the [access-centered framework](https://accesscenteredmovement.com/what-access-centered-means/) in describing access as a constant process that changes in each space with each individual. This document is a part of a broader collection of documentation across accessibility, listed below:
- [Accessibility policy](https://github.com/the-turing-way/the-turing-way/blob/main/ACCESSIBILITY.md): Our vision and guiding principles for how we practice accessibility.
- [Community Handbook Accessibility Guidelines](https://book.the-turing-way.org/community-handbook/accessibility): Practical advice to build accessibility into your contributions and activity within the community.
- Accessibility Guide: A broader discussion of accessibility and access-related practices that extend beyond The Turing Way.
Each resource (this Accessibility Policy, Community Handbook Accessibility Guidelines, and our Accessibility Guide) plays a different yet overlapping role in enabling, documenting, and sharing our evolving language around accessible and inclusive collaboration.
This policy is a work in progress, as are the practices that we employ as a community. Much like how _The Turing Way_ is always being written and rewritten, our accessibility policies and practices are constantly being updated as broader awareness grows and changes in technology are made.
## 1.1 Core Principles
These core principles are at the heart of our accessibility policy, and they extend beyond the web accessibility of our open access guides to our broader practices as a community, expanded upon in Section 2.0.
This means that questions of access are tied to how people read the guides as well as their ability to participate in the project and the community. Participation in _The Turing Way_ itself can be defined broadly, but doing so often requires navigating a number of different platforms. In all contexts, we aim to facilitate access in a broad sense through:
1. **Removing barriers**: We actively advocate for and employ tactics that seek to remove barriers for any current or future participants in our community. This may include people who have historically been limited or structurally excluded from participating due to any of the barriers listed above.
2. **Sharing openly**: We aim to draft, write, review, and edit our open access guides
gitextract_nsbykdd0/ ├── .all-contributorsrc ├── .github/ │ ├── ISSUE_TEMPLATE/ │ │ ├── 01_bug_report.yml │ │ ├── 02_edit_a_chapter.yml │ │ ├── 03_new_chapter.yml │ │ ├── 04_request_translation.yml │ │ ├── 05_general.yml │ │ └── config.yml │ ├── PULL_REQUEST_TEMPLATE.md │ ├── config.yml │ ├── dependabot.yaml │ ├── in-solidarity.yml │ ├── release-drafter.yml │ └── workflows/ │ ├── accessibility-alt-text-bot.yml │ ├── ci.yml │ ├── crowdin-contributors.yml │ ├── external_link_check.yml │ ├── lorem-ipsums.yml │ ├── no-bad-latin.yml │ ├── release-drafter.yml │ ├── release-workflow.yml │ ├── resources/ │ │ └── external_link_check_header.md │ ├── test-file-size.yml │ ├── validate-all-contributorsrc.yml │ ├── validate-dependabot.yml │ ├── validate_citation.yml │ ├── validate_issue_templates.yml │ └── yamllint.yaml ├── .gitignore ├── .yamllint ├── .zenodo.json ├── ACCESSIBILITY.md ├── CITATION.cff ├── CODEOWNERS ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── GOVERNANCE_ROLES.md ├── LICENSE.md ├── README-translated/ │ ├── README-Chinese.md │ ├── README-Dutch.md │ ├── README-French.md │ ├── README-German.md │ ├── README-Indonesian.md │ ├── README-Italian.md │ ├── README-Korean.md │ ├── README-Papiamento.md │ ├── README-Portuguese.md │ └── README-Spanish.md ├── README.md ├── Vagrantfile ├── book/ │ ├── .gitignore │ ├── .words.lst │ ├── Makefile │ ├── README.md │ ├── figures/ │ │ ├── logo/ │ │ │ ├── .picasa.ini │ │ │ └── site.webmanifest │ │ ├── main-branch.kra │ │ ├── one-branch.kra │ │ ├── sub-branch.kra │ │ └── two-branches.kra │ ├── requirements.in │ ├── requirements.txt │ ├── templates/ │ │ ├── book-stats.csv │ │ ├── case-study-template/ │ │ │ ├── README.md │ │ │ ├── case-study-template.md │ │ │ └── reflection-questions.md │ │ ├── chapter-template/ │ │ │ ├── README.md │ │ │ ├── chapter-content/ │ │ │ │ ├── chapter-checklist.md │ │ │ │ ├── chapter-content.md │ │ │ │ ├── chapter-personal-stories.md │ │ │ │ └── chapter-resources.md │ │ │ └── chapter-landing-page.md │ │ └── count-chapters.sh │ └── website/ │ ├── LICENSE.md │ ├── afterword/ │ │ ├── afterword.md │ │ ├── bibliography.md │ │ ├── collaborators.md │ │ ├── contributors/ │ │ │ ├── all-contributors.md │ │ │ ├── profiles.md │ │ │ └── translators.md │ │ ├── contributors-record.md │ │ ├── data-usage-statement.md │ │ ├── glossary.md │ │ ├── legal-disclaimer.md │ │ └── subprojects.md │ ├── analytics/ │ │ └── web-analytics.js │ ├── collaboration/ │ │ ├── academic-industry/ │ │ │ ├── academic-industry-community.md │ │ │ ├── academic-industry-establish.md │ │ │ ├── case-studies/ │ │ │ │ ├── BridgeAI_IndependentScientificAdvice.md │ │ │ │ ├── practitioners-hub-case-study.md │ │ │ │ └── turing-roche-case-study.md │ │ │ ├── case-study-library.md │ │ │ ├── intro-case-studies-and-best-practices-in-academic-industry-collaboration.md │ │ │ └── online-resources-best-practices.md │ │ ├── academic-industry.md │ │ ├── ambassador-schemes/ │ │ │ ├── ambassador-schemes-establish.md │ │ │ └── ambassador-schemes-personal-story.md │ │ ├── ambassador-schemes.md │ │ ├── collaboration.md │ │ ├── github-novice/ │ │ │ ├── github-novice-advanced.md │ │ │ ├── github-novice-features.md │ │ │ ├── github-novice-firststeps.md │ │ │ └── github-novice-motivation.md │ │ ├── github-novice.md │ │ ├── leadership/ │ │ │ ├── leadership-building.md │ │ │ ├── leadership-features.md │ │ │ ├── leadership-opportunities.md │ │ │ ├── leadership-story-data-librarian.md │ │ │ └── leadership-story-hackathon.md │ │ ├── leadership.md │ │ ├── maintain-review/ │ │ │ ├── maintain-review-maintenance.md │ │ │ ├── maintain-review-merge.md │ │ │ ├── maintain-review-permissions.md │ │ │ ├── maintain-review-resources.md │ │ │ └── maintain-review-review.md │ │ ├── maintain-review.md │ │ ├── meetings-events-co-working/ │ │ │ ├── chairing.md │ │ │ ├── event-tools.md │ │ │ ├── hybrid-collab/ │ │ │ │ ├── hybrid-collab-challenges.md │ │ │ │ ├── hybrid-collab-guidelines.md │ │ │ │ └── hybrid-collab-resources.md │ │ │ ├── hybrid-collab.md │ │ │ ├── organising-coding-cafe.md │ │ │ ├── organising-conference/ │ │ │ │ ├── reg-form-template.md │ │ │ │ └── reg-forms.md │ │ │ ├── organising-conference.md │ │ │ ├── ppie-events/ │ │ │ │ ├── ppie-events-comms.md │ │ │ │ ├── ppie-events-location.md │ │ │ │ ├── ppie-events-planning.md │ │ │ │ ├── ppie-events-resources.md │ │ │ │ ├── ppie-events-schedules.md │ │ │ │ ├── ppie-events-socials.md │ │ │ │ └── ppie-events-tech.md │ │ │ ├── ppie-events.md │ │ │ ├── remote-collab/ │ │ │ │ ├── coworking.md │ │ │ │ ├── event-participation.md │ │ │ │ ├── informal-chats.md │ │ │ │ ├── organising-remote-meetings.md │ │ │ │ ├── remote-collab-guidelines.md │ │ │ │ ├── remote-collab-prosandcons.md │ │ │ │ ├── remote-collab-team.md │ │ │ │ └── remote-collab-useful-resources.md │ │ │ └── remote-collab.md │ │ ├── meetings-events-co-working.md │ │ ├── new-community/ │ │ │ ├── new-community-differences.md │ │ │ ├── new-community-guide.md │ │ │ ├── new-community-teamwork.md │ │ │ └── new-community-techissues.md │ │ ├── new-community.md │ │ ├── oss-sustainability/ │ │ │ ├── oss-sustainability-challenges.md │ │ │ └── oss-sustainability-examples.md │ │ ├── research-infrastructure-roles/ │ │ │ ├── community-manager.md │ │ │ ├── data-steward-personal-story.md │ │ │ ├── data-steward.md │ │ │ ├── data-wrangler.md │ │ │ ├── ram.md │ │ │ ├── research-community-manager-personal-story-1.md │ │ │ ├── research-infrastructure-developer.md │ │ │ ├── rse-personal-story.md │ │ │ └── rse.md │ │ ├── research-infrastructure-roles.md │ │ ├── shared-ownership/ │ │ │ ├── shared-ownership-challenges.md │ │ │ ├── shared-ownership-defaults.md │ │ │ ├── shared-ownership-models.md │ │ │ └── shared-ownership-projects.md │ │ ├── shared-ownership.md │ │ ├── stakeholder-engagement.md │ │ ├── team-manual/ │ │ │ └── team-manual-on-off-boarding.md │ │ └── team-manual.md │ ├── communication/ │ │ ├── aa/ │ │ │ ├── aa-equitable.md │ │ │ ├── aa-misconduct.md │ │ │ ├── aa-overview.md │ │ │ ├── aa-resources.md │ │ │ ├── aa-stories-community.md │ │ │ ├── aa-stories-interdisciplinary.md │ │ │ ├── aa-tips.md │ │ │ └── aa-traditions.md │ │ ├── aa.md │ │ ├── binder/ │ │ │ └── zero-to-binder.md │ │ ├── binder.md │ │ ├── blogs/ │ │ │ ├── blogs-personal-stories.md │ │ │ └── blogs-webpage.md │ │ ├── blogs.md │ │ ├── citable/ │ │ │ ├── citable-cff.md │ │ │ ├── citable-cffinit.md │ │ │ ├── citable-cite.md │ │ │ ├── citable-linking.md │ │ │ ├── citable-metadata.md │ │ │ ├── citable-orcid.md │ │ │ ├── citable-otherscite.md │ │ │ ├── citable-resources.md │ │ │ ├── citable-steps.md │ │ │ └── citable-versioning.md │ │ ├── citable.md │ │ ├── comms-overview/ │ │ │ ├── comms-overview-accessibly.md │ │ │ ├── comms-overview-principles.md │ │ │ └── comms-overview-resources.md │ │ ├── comms-overview.md │ │ ├── communication.md │ │ ├── dif-articles/ │ │ │ ├── data.md │ │ │ ├── methods.md │ │ │ ├── micro.md │ │ │ ├── reg.md │ │ │ └── software.md │ │ ├── dif-articles.md │ │ ├── lay-summaries/ │ │ │ └── lay-summaries-personal-stories.md │ │ ├── lay-summaries.md │ │ ├── open/ │ │ │ ├── curriculum-development.md │ │ │ ├── education.md │ │ │ └── embedding-ds.md │ │ ├── open.md │ │ ├── os-comms/ │ │ │ ├── os-comms-channels.md │ │ │ └── os-comms-issue-tracking.md │ │ ├── os-comms.md │ │ ├── peer-review/ │ │ │ ├── peer-review-code.md │ │ │ ├── peer-review-guidance.md │ │ │ ├── peer-review-open.md │ │ │ ├── peer-review-overview.md │ │ │ └── peer-review-resources.md │ │ ├── peer-review.md │ │ ├── personal/ │ │ │ ├── personal-cv.md │ │ │ └── personal-website.md │ │ ├── personal.md │ │ ├── podcasts/ │ │ │ └── podcasts-personal-stories.md │ │ ├── podcasts.md │ │ ├── presentations/ │ │ │ ├── presentations-personal-stories.md │ │ │ └── presentations-remote.md │ │ ├── presentations.md │ │ ├── research-objects/ │ │ │ ├── ro-concepts.md │ │ │ └── ro-implementation.md │ │ ├── research-objects.md │ │ ├── social-media/ │ │ │ ├── social-media-twitter-multiple.md │ │ │ └── social-media-twitter-tips.md │ │ └── social-media.md │ ├── community-handbook/ │ │ ├── accessibility/ │ │ │ ├── accessibility-alt-text.md │ │ │ ├── accessibility-comms-platforms.md │ │ │ ├── accessibility-event-organising.md │ │ │ └── accessibility-policy.md │ │ ├── accessibility.md │ │ ├── acknowledgement/ │ │ │ ├── acknowledgement-examples.md │ │ │ ├── acknowledgement-members.md │ │ │ └── acknowledgement-record.md │ │ ├── acknowledgement.md │ │ ├── bookdash/ │ │ │ ├── bookdash-after.md │ │ │ ├── bookdash-application.md │ │ │ ├── bookdash-events.md │ │ │ ├── bookdash-illustrator.md │ │ │ ├── bookdash-logistics.md │ │ │ └── bookdash-selection.md │ │ ├── bookdash.md │ │ ├── coc/ │ │ │ ├── coc-acknowledgement.md │ │ │ ├── coc-details.md │ │ │ ├── coc-enforcement.md │ │ │ └── coc-reporting.md │ │ ├── coc.md │ │ ├── communication-channels/ │ │ │ ├── slack-start-guide.md │ │ │ └── slack-welcome-guide.md │ │ ├── communication-channels.md │ │ ├── community-calls/ │ │ │ ├── calendar.md │ │ │ ├── community-calls-collabcafe.md │ │ │ ├── community-calls-forums.md │ │ │ ├── community-calls-motivation.md │ │ │ └── community-calls-working-groups.md │ │ ├── community-calls.md │ │ ├── community-handbook.md │ │ ├── contributing-chapters/ │ │ │ ├── contributing-templates.md │ │ │ └── contributing-workflow.md │ │ ├── contributing-chapters.md │ │ ├── contributing.md │ │ ├── fireside-chat/ │ │ │ ├── fireside-chat-checklist.md │ │ │ └── fireside-chat-roles.md │ │ ├── fireside-chat.md │ │ ├── github-gardening.md │ │ ├── infrastructure/ │ │ │ ├── infrastructure-contributors.md │ │ │ ├── infrastructure-dns.md │ │ │ ├── infrastructure-external-link-check.md │ │ │ ├── infrastructure-pathways.md │ │ │ ├── infrastructure-plugins.md │ │ │ ├── infrastructure-redirects.md │ │ │ └── infrastructure-teams-as-code.md │ │ ├── infrastructure.md │ │ ├── local-build.md │ │ ├── newsletters/ │ │ │ ├── newsletters-process.md │ │ │ ├── newsletters-style.md │ │ │ └── newsletters-template.md │ │ ├── newsletters.md │ │ ├── onboarding-offboarding/ │ │ │ ├── offboarding-core-team.md │ │ │ ├── onboarding-core-team.md │ │ │ └── onboarding-general-calls.md │ │ ├── onboarding-offboarding.md │ │ ├── pathways/ │ │ │ ├── pathways-creation.md │ │ │ └── pathways-example.md │ │ ├── pathways.md │ │ ├── presenting.md │ │ ├── style/ │ │ │ ├── consistency/ │ │ │ │ ├── consistency-formatting.md │ │ │ │ ├── consistency-language.md │ │ │ │ └── consistency-structure.md │ │ │ ├── style-blocks.md │ │ │ ├── style-citing.md │ │ │ ├── style-consistency.md │ │ │ ├── style-crossref.md │ │ │ ├── style-custom-roles-and-directives.md │ │ │ ├── style-figures.md │ │ │ ├── style-glossary.md │ │ │ ├── style-videos.md │ │ │ └── style-writing-markdown.md │ │ ├── style.md │ │ ├── templates/ │ │ │ ├── template-bookdash-feedback.md │ │ │ ├── template-bookdash-github.md │ │ │ ├── template-bookdash-index.md │ │ │ ├── template-bookdash-notes.md │ │ │ ├── template-bookdash-precall.md │ │ │ ├── template-coworking-collabcafe.md │ │ │ ├── template-fireside-chat.md │ │ │ ├── template-new-chapter-announcement │ │ │ └── template-newsletter-draft.md │ │ ├── templates.md │ │ ├── translation/ │ │ │ ├── translation-getting-started.md │ │ │ ├── translation-hello-crowdin.md │ │ │ ├── translation-localisation.md │ │ │ └── translation-workflow.md │ │ └── translation.md │ ├── ethical-research/ │ │ ├── activism/ │ │ │ ├── activism-case-study-google.md │ │ │ ├── activism-env-impact.md │ │ │ ├── activism-robodebt.md │ │ │ ├── activism-unionisation.md │ │ │ └── activism-whistleblowing.md │ │ ├── activism.md │ │ ├── cultural-change/ │ │ │ ├── alt-models-discussion.md │ │ │ └── cc-examples.md │ │ ├── cultural-change.md │ │ ├── data-feminism/ │ │ │ └── data-feminism-power.md │ │ ├── data-feminism.md │ │ ├── data-hazards/ │ │ │ ├── dh-case-study.md │ │ │ ├── dh-how-to-use.md │ │ │ └── dh-intro.md │ │ ├── data-hazards.md │ │ ├── ethical-research.md │ │ ├── ethics-committees.md │ │ ├── ethics-intro.md │ │ ├── ethics-open-source-governance.md │ │ ├── internal-policy.md │ │ ├── law-policy/ │ │ │ ├── law-policy-ethics.md │ │ │ ├── law-policy-resources.md │ │ │ └── law-policy-rights.md │ │ ├── law-policy.md │ │ ├── preclinical-research.md │ │ ├── self-reflection/ │ │ │ ├── sr-positionality.md │ │ │ ├── sr-power.md │ │ │ ├── sr-prompts.md │ │ │ └── sr-resources.md │ │ ├── self-reflection.md │ │ └── social-data.md │ ├── foreword/ │ │ ├── background.md │ │ ├── cite.md │ │ ├── community.md │ │ ├── embracing-digital-commons.md │ │ ├── emergent-strategy.md │ │ ├── faqs.md │ │ ├── foreword.md │ │ ├── governance/ │ │ │ ├── governance-roles.md │ │ │ └── ways-of-working.md │ │ ├── governance.md │ │ ├── guiding-principles.md │ │ └── navigate.md │ ├── index.md │ ├── myst.yml │ ├── pathways/ │ │ ├── pathways-community-management-concepts.md │ │ ├── pathways-community-management-operations.md │ │ ├── pathways-data-science-without-borders.md │ │ ├── pathways-data-stewards.md │ │ ├── pathways-early-career-researchers.md │ │ ├── pathways-project-leaders.md │ │ ├── pathways-research-software-engineers.md │ │ ├── pathways-software-citation.md │ │ └── pathways.md │ ├── plugins/ │ │ └── profile.mjs │ ├── project-design/ │ │ ├── data-security/ │ │ │ ├── data-governance/ │ │ │ │ ├── bigcode_casestudy.md │ │ │ │ └── data-gov-ml.md │ │ │ ├── data-governance.md │ │ │ ├── sdp/ │ │ │ │ ├── biological.md │ │ │ │ ├── combined.md │ │ │ │ ├── confidential.md │ │ │ │ ├── metadata.md │ │ │ │ ├── personal.md │ │ │ │ └── types.md │ │ │ ├── sdp.md │ │ │ ├── sdpm/ │ │ │ │ ├── data-privacy-strategies.md │ │ │ │ ├── informed.md │ │ │ │ ├── resources.md │ │ │ │ └── sharing-sensitive-data.md │ │ │ ├── sdpm.md │ │ │ └── sdpw.md │ │ ├── data-security.md │ │ ├── info-management/ │ │ │ ├── code-styling.md │ │ │ └── filenaming.md │ │ ├── info-management.md │ │ ├── missing-data/ │ │ │ ├── missing-data-checklist-resources.md │ │ │ ├── missing-data-methods.md │ │ │ ├── missing-data-structured-missingness.md │ │ │ ├── missing-data-structures.md │ │ │ └── missing-data-visualising-missingness.md │ │ ├── missing-data.md │ │ ├── pd-overview/ │ │ │ ├── pd-checklist.md │ │ │ ├── pd-overview-methods.md │ │ │ ├── pd-overview-planning.md │ │ │ ├── pd-overview-repro.md │ │ │ ├── pd-overview-sharing.md │ │ │ ├── pd-overview-version.md │ │ │ ├── project-repo/ │ │ │ │ ├── project-repo-advanced.md │ │ │ │ ├── project-repo-contributors.md │ │ │ │ ├── project-repo-participation.md │ │ │ │ ├── project-repo-readme.md │ │ │ │ ├── project-repo-resources.md │ │ │ │ └── project-repo-roadmapping.md │ │ │ └── project-repo.md │ │ ├── pd-overview.md │ │ ├── project-design.md │ │ ├── project-management-methodologies/ │ │ │ └── overview.md │ │ ├── risks-of-bias/ │ │ │ ├── confounding-variables.md │ │ │ ├── discrimination-bias.md │ │ │ ├── identifying-risks-of-bias.md │ │ │ └── validation-generalisability.md │ │ ├── risks-of-bias.md │ │ ├── sdpw/ │ │ │ ├── pd-sdp-private-learning.md │ │ │ ├── pd-sdp-sensitive-code.md │ │ │ ├── pd-sdp-sensitive-files.md │ │ │ └── pd-sdp-trew.md │ │ ├── stakeholders/ │ │ │ ├── persona/ │ │ │ │ ├── persona-contributors.md │ │ │ │ └── persona-creation.md │ │ │ └── persona.md │ │ └── stakeholders.md │ ├── references.bib │ └── reproducible-research/ │ ├── binderhub/ │ │ ├── binderhub-build.md │ │ ├── binderhub-compute.md │ │ ├── binderhub-introduction.md │ │ └── binderhub-resources.md │ ├── binderhub.md │ ├── case-studies/ │ │ └── case-study-statistical.md │ ├── case-studies.md │ ├── ci/ │ │ ├── ci-building-gh-actions.md │ │ ├── ci-github-actions.md │ │ ├── ci-options.md │ │ ├── ci-practices.md │ │ └── ci-resources.md │ ├── ci.md │ ├── code-documentation/ │ │ ├── code-documentation-code.md │ │ ├── code-documentation-project.md │ │ └── code-documentation-resources.md │ ├── code-documentation.md │ ├── code-quality/ │ │ ├── code-quality-naming.md │ │ ├── code-quality-readability.md │ │ ├── code-quality-resources.md │ │ ├── code-quality-robust.md │ │ ├── code-quality-style-formatting.md │ │ └── code-quality-style.md │ ├── code-quality.md │ ├── code-reuse/ │ │ ├── code-reuse-details.md │ │ ├── code-reuse-overview.md │ │ └── code-reuse-packages.md │ ├── code-reuse.md │ ├── compendia.md │ ├── licensing/ │ │ ├── licensing-checklist.md │ │ ├── licensing-compatibility.md │ │ ├── licensing-data.md │ │ ├── licensing-documentation.md │ │ ├── licensing-ethical-source.md │ │ ├── licensing-floss.md │ │ ├── licensing-hardware.md │ │ ├── licensing-ip.md │ │ ├── licensing-ml-case-studies.md │ │ └── licensing-ml.md │ ├── licensing.md │ ├── make/ │ │ ├── make-appendix.md │ │ ├── make-casestudy.md │ │ ├── make-debugging.md │ │ ├── make-examples.md │ │ ├── make-resources.md │ │ └── make-results.md │ ├── make.md │ ├── open/ │ │ ├── open-access.md │ │ ├── open-checklist.md │ │ ├── open-data.md │ │ ├── open-hardware.md │ │ ├── open-notebooks.md │ │ ├── open-resources.md │ │ ├── open-scholarship.md │ │ └── open-source.md │ ├── open.md │ ├── overview/ │ │ ├── overview-barriers.md │ │ ├── overview-benefit.md │ │ ├── overview-definitions.md │ │ └── overview-resources.md │ ├── overview.md │ ├── rdm/ │ │ ├── rdm-article.md │ │ ├── rdm-care.md │ │ ├── rdm-checklist.md │ │ ├── rdm-cleaning.md │ │ ├── rdm-data-curation.md │ │ ├── rdm-data.md │ │ ├── rdm-dmp.md │ │ ├── rdm-elns.md │ │ ├── rdm-fair.md │ │ ├── rdm-find.md │ │ ├── rdm-metadata.md │ │ ├── rdm-methods.md │ │ ├── rdm-personal.md │ │ ├── rdm-pid.md │ │ ├── rdm-repository.md │ │ ├── rdm-resources.md │ │ ├── rdm-sharing.md │ │ ├── rdm-smp.md │ │ ├── rdm-spreadsheets.md │ │ ├── rdm-storage.md │ │ ├── rdm-stories.md │ │ └── rdm-visualisation.md │ ├── rdm.md │ ├── renv/ │ │ ├── renv-containers.md │ │ ├── renv-options.md │ │ ├── renv-package.md │ │ ├── renv-resources.md │ │ ├── renv-virtualmachine.md │ │ └── renv-yaml.md │ ├── renv.md │ ├── reproducible-research.md │ ├── reviewing/ │ │ ├── reviewing-checklist.md │ │ ├── reviewing-motivation.md │ │ ├── reviewing-recommend.md │ │ ├── reviewing-resources.md │ │ └── reviewing-workflow.md │ ├── reviewing.md │ ├── risk-assess/ │ │ ├── risk-assess-impact.md │ │ └── risk-assess-resources.md │ ├── risk-assess.md │ ├── testing/ │ │ ├── testing-acceptance-regression.md │ │ ├── testing-checklist.md │ │ ├── testing-driven-development.md │ │ ├── testing-exceptions.md │ │ ├── testing-guidance.md │ │ ├── testing-integrationtest.md │ │ ├── testing-overview.md │ │ ├── testing-resources.md │ │ ├── testing-runtime.md │ │ ├── testing-smoketest.md │ │ ├── testing-systemtest.md │ │ └── testing-unittest.md │ ├── testing.md │ ├── vcs/ │ │ ├── vcs-checklist.md │ │ ├── vcs-data.md │ │ ├── vcs-git-branches.md │ │ ├── vcs-git-commit.md │ │ ├── vcs-git-compare.md │ │ ├── vcs-git-general.md │ │ ├── vcs-git-in-research.md │ │ ├── vcs-git-interactive.md │ │ ├── vcs-git-merge.md │ │ ├── vcs-git-summary.md │ │ ├── vcs-git.md │ │ ├── vcs-github.md │ │ ├── vcs-personal-stories.md │ │ ├── vcs-resources.md │ │ ├── vcs-workflow-branches.md │ │ └── vcs-workflow.md │ └── vcs.md ├── lychee.toml ├── netlify.toml ├── release-workflow.md ├── tests/ │ ├── lorem-ipsums.py │ ├── no-bad-latin.py │ ├── pull_files.py │ ├── release_workflow.py │ ├── requirements.txt │ ├── test-file-size.sh │ ├── validate-all-contributorsrc.py │ └── validate-dependabot.py └── ways_of_working.md
SYMBOL INDEX (28 symbols across 7 files)
FILE: book/website/plugins/profile.mjs
method run (line 10) | run(data) {
method run (line 33) | run(data) {
method run (line 56) | run(data) {
method run (line 79) | run(data) {
method run (line 105) | run(data) {
method run (line 130) | run(data) {
method run (line 210) | run(data, vfile, ctx) {
function listItem (line 315) | function listItem(prefix, role, data) {
function cardItem (line 329) | function cardItem(title, nodes) {
FILE: tests/lorem-ipsums.py
function parse_args (line 11) | def parse_args():
function remove_comments (line 32) | def remove_comments(text_string):
function check_changed_files (line 46) | def check_changed_files(pr_num, github_token=None, bad_phrase=BAD_PHRASE):
function check_all_files (line 79) | def check_all_files(
function main (line 105) | def main():
FILE: tests/no-bad-latin.py
function parse_args (line 11) | def parse_args():
function remove_comments (line 26) | def remove_comments(text_string):
function get_lines (line 41) | def get_lines(text_string, sub_string):
function construct_error_message (line 56) | def construct_error_message(files_dict):
function read_and_check_files (line 78) | def read_and_check_files(files):
function get_all_files (line 119) | def get_all_files(directory=os.path.join(ABSOLUTE_HERE, "book", "website...
function main (line 140) | def main():
FILE: tests/pull_files.py
function parse_args (line 9) | def parse_args():
function get_files_from_pr (line 30) | def get_files_from_pr(pr_num, github_token=None):
function filter_files (line 61) | def filter_files(pr_num, github_token=None, start_phrase="book/website",...
FILE: tests/release_workflow.py
function update_citation_file (line 16) | def update_citation_file(citation_file_path):
FILE: tests/validate-all-contributorsrc.py
function get_schema (line 11) | def get_schema() -> dict[Any, Any]:
function main (line 29) | def main() -> None:
FILE: tests/validate-dependabot.py
function main (line 11) | def main() -> None:
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"path": ".gitignore",
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"preview": "# The Turing Way\n\n[](https://book.the-turing-way."
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"preview": "# The Turing Way\n\n[](https://book.the-turing-way.or"
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"chars": 5070,
"preview": "# Welcome\n\nThank you for contributing to _The Turing Way_ book by writing a case study!\n\n_The Turing Way_ chapters are c"
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"path": "book/templates/case-study-template/case-study-template.md",
"chars": 6401,
"preview": "(sectioninitials-filename)=\n# Case Study Title\n\n***Please remove all the Blockquotes (sentences that start with \">\")***\n"
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"path": "book/templates/chapter-template/README.md",
"chars": 8377,
"preview": "# Welcome\n\nWell done on taking the first steps towards writing a chapter for _The Turing Way_ book!\n\nIn order to standa"
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"path": "book/templates/chapter-template/chapter-content/chapter-checklist.md",
"chars": 1464,
"preview": "(sectioninitials-filename)=\n# Checklist\n\n> List out the action points you want the readers to take based on the key idea"
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"path": "book/templates/chapter-template/chapter-content/chapter-content.md",
"chars": 5544,
"preview": "<!-- \nIdentify the major themes/topics that make up your chapter. \nThese will be the subchapters of your chapter.\nWrite "
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"path": "book/templates/chapter-template/chapter-content/chapter-personal-stories.md",
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"preview": "(sectioninitials-filename)=\n# Personal Stories\n\n***Please remove all the Blockquotes (sentences that start with \">\")***\n"
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"preview": "(sectioninitials-filename)=\n# Resources\n\n> Use this subchapter to\n> - tell readers what other chapters in _The Turing W"
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"path": "book/templates/chapter-template/chapter-landing-page.md",
"chars": 3033,
"preview": "(sectioninitials-filename)=\n# Chapter Title\n\n> Labels (above headers) should follow the cross-referencing conventions de"
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"path": "book/templates/count-chapters.sh",
"chars": 1411,
"preview": "#!/bin/bash\n# run this script locally in the 'quarterly report' folder\n# Indicate the date and time for last stat genera"
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"path": "book/website/LICENSE.md",
"chars": 310,
"preview": "# License for this book\n\nAll content in this book (located in the `book/website/` folder)\nis licensed under the [Creativ"
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"chars": 832,
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"preview": "(contributors-record-translators)=\n# Translators\n\n_The Turing Way_ uses Crowdin as a platform for contributing [translat"
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"preview": "(data-usage)=\n# _The Turing Way_ Book Data Usage\n\nWe want to understand and optimise the use, geographical reach, and fi"
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"path": "book/website/afterword/legal-disclaimer.md",
"chars": 2250,
"preview": "(legal-disclaimer)=\n# Legal disclaimer: The Turing Way is not legal advice!\n\n_The Turing Way_ is a lightly opinionated g"
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"path": "book/website/afterword/subprojects.md",
"chars": 6793,
"preview": "(subprojects)=\n# Working Groups, Funded Projects and Informal Initiatives\n\nThis page provides access to various group-ba"
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"preview": "/**\n * This file contains the tracking code that allows analytics to work on The Turing Way using Matomo\n*/\n\nvar _paq = "
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"preview": "(cl-academic-industry-community)=\n# Community Building in an Academic-Industry Collaboration\n\nBuilding an engaged commun"
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"path": "book/website/collaboration/academic-industry/academic-industry-establish.md",
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"preview": "(cl-academic-industry-establish)=\n# Establishing an Academic-Industry Collaboration\n\n(cl-academic-industry-establish-ini"
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"preview": "(cl-bridgeai-isa-case-study)=\n# BridgeAI - Independent Scientific Advice\n\n## Overview\nIn 2023, [Innovate UK BridgeAI](ht"
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"preview": "(cl-practitioners-hub-case-study)=\n# Case Study: _The Turing Way_ Practitioners Hub \n\n```{figure} ../../../../figures/pr"
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"path": "book/website/collaboration/academic-industry/case-studies/turing-roche-case-study.md",
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"preview": "(cl-turing-roche-case-study)= \n# Case Study: Turing-Roche Community Activities\n\n```{figure} ../../../../figures/turing-"
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"path": "book/website/collaboration/academic-industry/case-study-library.md",
"chars": 2274,
"preview": "(cl-academic-industry-case-studies)=\n# Case Studies in Academic-industry Collaboration\nThis is a library of case studies"
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"path": "book/website/collaboration/academic-industry/intro-case-studies-and-best-practices-in-academic-industry-collaboration.md",
"chars": 2598,
"preview": "(cl-academic-industry-best-practices)=\n# Case studies and best practices in industry-academia collaboration\nThe creation"
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"path": "book/website/collaboration/academic-industry/online-resources-best-practices.md",
"chars": 3815,
"preview": "(cl-academic-industry-online-resources)=\n# Online Resources\nThis document provides valuable resources for you to impleme"
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"path": "book/website/collaboration/academic-industry.md",
"chars": 4058,
"preview": "(cl-academic-industry)=\n# Academic-Industry Collaborations\n\n(cl-academic-industry-prerequisites)=\n## Prerequisites\n\n\n| P"
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"path": "book/website/collaboration/ambassador-schemes/ambassador-schemes-establish.md",
"chars": 6220,
"preview": "(cl-ambassador-schemes-establish)=\n# Establishing and Running an Ambassador Scheme \n\n(cl-ambassador-schemes-establish-se"
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"path": "book/website/collaboration/ambassador-schemes/ambassador-schemes-personal-story.md",
"chars": 17244,
"preview": "(cl-ambassador-schemes-personal-story)= \n# Turing-Roche Community Scholar Scheme Personal Story\n\n## Introduction\n\nMy na"
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"chars": 4216,
"preview": "(cl-ambassador-schemes)=\n# Ambassador Schemes\n\n(cl-ambassador-schemes-prerequisites)=\n## Prerequisites\n\n| Prerequisites "
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"chars": 2423,
"preview": "(cl-github-novice-advanced)=\n# Advanced GitHub features\n## More collaboration\nGitHub makes it easy to collaborate and cr"
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"path": "book/website/collaboration/github-novice/github-novice-features.md",
"chars": 3924,
"preview": "(cl-github-novice-features)=\n# Using more GitHub features\n\nNow that your repo is set up, you are ready to add more stuff"
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{
"path": "book/website/collaboration/github-novice/github-novice-firststeps.md",
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"preview": "(cl-github-novice-firststeps)=\n# First steps on GitHub\n\nHere, we provide step-by-step instructions to get started with G"
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"chars": 3235,
"preview": "(cl-github-novice-motivation)=\n# Motivation for Using GitHub\n\nGitHub is an online web interface for collaborating, devel"
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"chars": 1536,
"preview": "(cl-github-novice)=\n# Getting Started With GitHub\n\n## Prerequisites\n\n| Prerequisite | Importance | Notes |\n| -------"
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"preview": "(cl-leadership-building)=\n# Building Healthy Leadership Skills\n\nBy healthy leadership, we mean creating an ideal environ"
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"path": "book/website/collaboration/leadership/leadership-features.md",
"chars": 8776,
"preview": "(cl-leadership-features)=\n# Important Features of Leadership\n\n```{note}\n\"A leader is anyone who takes responsibility for"
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"chars": 5962,
"preview": "(cl-leadership-opportunities)=\n# Creating Leadership Opportunities\n\nWhile leadership opportunities can emerge, it can be"
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"chars": 4207,
"preview": "# Personal Story of Leadership by a Data Librarian\n\n## What does leadership for research infrastructure roles look like?"
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"chars": 3894,
"preview": "(cl-leadership-story-hackathon)=\n# Personal Story from Running a Hackathon\n\n## Diving into Leadership: lessons from lead"
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"chars": 7616,
"preview": "(cl-leadership)=\n# Open Leadership in Data Science\n\n## Overview\n\nEvery team, every project and every collaboration has p"
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"path": "book/website/collaboration/maintain-review/maintain-review-maintenance.md",
"chars": 2549,
"preview": "(cl-maintain-review-maintenance)=\n# Project Maintenance\n\nAn open source project allows many people to make contributions"
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"path": "book/website/collaboration/maintain-review/maintain-review-merge.md",
"chars": 915,
"preview": "(cl-maintain-review-merging)=\n# Merging Contributions\nPull requests made by contributors can be approved or merged by ma"
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"path": "book/website/collaboration/maintain-review/maintain-review-permissions.md",
"chars": 2185,
"preview": "(cl-maintain-review-permissions)=\n# Ownership and Permissions\nIn any team or organisation owned project, there are diffe"
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"path": "book/website/collaboration/maintain-review/maintain-review-resources.md",
"chars": 994,
"preview": "(cl-maintain-review-resources)=\n# Resources\n\n* [Community communications for open source](https://book.the-turing-way.or"
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{
"path": "book/website/collaboration/maintain-review/maintain-review-review.md",
"chars": 6576,
"preview": "(cl-maintain-review-reviewing)=\n# Reviewing Contributions\n\n## Reviewing process\nIn a project or codebase, a set of chang"
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"path": "book/website/collaboration/maintain-review.md",
"chars": 2365,
"preview": "(cl-maintain-review)=\n# Maintainers and Reviewers on GitHub\n\n## Prerequisites\n\n| Prerequisite | Importance |\n| ---------"
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"path": "book/website/collaboration/meetings-events-co-working/chairing.md",
"chars": 9316,
"preview": "(cl-mec-chairing)=\n# Chairing Events\n\nTo run an event smoothly, part of planning and preparation is to delegate tasks of"
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{
"path": "book/website/collaboration/meetings-events-co-working/event-tools.md",
"chars": 10173,
"preview": "(cl-mec-event-tools)=\n# Tools for Collaboration\n\nMany free and commercial tools exist to improve people's experience of "
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"path": "book/website/collaboration/meetings-events-co-working/hybrid-collab/hybrid-collab-challenges.md",
"chars": 4934,
"preview": "(cl-mec-hybrid-collab-challenges)=\n# Challenges faced during Hybrid Collaboration\n\nCollaborating in a hybrid setting pre"
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{
"path": "book/website/collaboration/meetings-events-co-working/hybrid-collab/hybrid-collab-guidelines.md",
"chars": 9115,
"preview": "(cl-mec-hybrid-collab-guidelines)=\n# Guidelines for Hybrid Collaboration\n\n## Chairing Hybrid Events\n- The Facilitator sh"
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{
"path": "book/website/collaboration/meetings-events-co-working/hybrid-collab/hybrid-collab-resources.md",
"chars": 1138,
"preview": "(cl-mec-hybrid-collab-resources)=\n\n# Useful resources\n\nHere are some useful guides, tips and tutorials on how to facilit"
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{
"path": "book/website/collaboration/meetings-events-co-working/hybrid-collab.md",
"chars": 1813,
"preview": "(cl-mec-hybrid-collab)=\n# Hybrid Collaboration\n\nHybrid collaboration is a way of working where individuals collaborate f"
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{
"path": "book/website/collaboration/meetings-events-co-working/organising-coding-cafe.md",
"chars": 24302,
"preview": "(cl-mec-organising-coding-cafe)=\n# Organising a Programming CAFE\n\nA programming CAFE (Code Along, Feel Empowered) is a "
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{
"path": "book/website/collaboration/meetings-events-co-working/organising-conference/reg-form-template.md",
"chars": 8594,
"preview": "# Template for Conference or Event Registration Form\n\nThis template includes all the different questions you might want "
},
{
"path": "book/website/collaboration/meetings-events-co-working/organising-conference/reg-forms.md",
"chars": 4999,
"preview": "(cl-organising-conferences-reg-forms)=\n# Registration Forms\n\n(cl-organising-conferences-reg-forms-host)=\n## Where will y"
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"path": "book/website/collaboration/meetings-events-co-working/organising-conference.md",
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"preview": "(cl-mec-organising-conferences)=\n# Organising a Conference\n\n*Recommendations listed in this subchapter also apply to lon"
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{
"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-comms.md",
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"preview": "(cl-mec-ppie-events-comms)=\n# Planning Communications for PPIE Events\nHaving a good plan on how and when to communicate "
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{
"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-location.md",
"chars": 7600,
"preview": "(cl-mec-ppie-events-location)=\n# Location\nThis section provides guidance that is most relevant for in-person or hybrid e"
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"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-planning.md",
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"preview": "(cl-mec-ppie-events-planning)=\n# Planning your Event\nFor many projects, the involvement of individuals and communities w"
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"preview": "(cl-mec-ppie-events-resources)=\n# Resources\n\n\n(cl-mec-ppie-events-resources-learn)=\n## What to Learn Next\n\n> **Recommend"
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"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-schedules.md",
"chars": 31687,
"preview": "(cl-mec-ppie-events-schedule-planning)=\n# Creating Schedules and Agendas for Inclusive Events\nThe timing and design of y"
},
{
"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-socials.md",
"chars": 11341,
"preview": "(cl-mec-ppie-events-social-and-networking-guide)=\n# Inclusive Social and Networking Events\nSocial events, dinners, and e"
},
{
"path": "book/website/collaboration/meetings-events-co-working/ppie-events/ppie-events-tech.md",
"chars": 9997,
"preview": "(cl-mec-ppie-events-technology)=\n# Technology Considerations for Inclusive Events\nWhen planning an event that will be at"
},
{
"path": "book/website/collaboration/meetings-events-co-working/ppie-events.md",
"chars": 6370,
"preview": "(cl-mec-ppie-events)=\n# Hosting Events with Members of the Public\nA guide for involving members of the public at researc"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/coworking.md",
"chars": 10986,
"preview": "(cl-mec-remote-coworking)=\n# Organising Coworking Calls or Meetings\n\nThe concept of coworking is generally associated wi"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/event-participation.md",
"chars": 7471,
"preview": "(cl-mec-remote-event-participation)=\n# Participating in Remote Events\n\n## Motivation\n\nNow that you have been invited to "
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/informal-chats.md",
"chars": 4226,
"preview": "(cl-mec-remote-informal-chats)=\n# Informal Coffee Chats\n\nWhen a team is working remotely, they can get together at speci"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/organising-remote-meetings.md",
"chars": 10884,
"preview": "(cl-mec-remote-organising-meetings)=\n# Organising Remote Meetings\n\nA successful meeting in the context of research or te"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/remote-collab-guidelines.md",
"chars": 6706,
"preview": "(cl-mec-remote-collab-guidelines)=\n# Guidelines for Remote Collaboration\n\nIn this chapter, guidelines are a set of recom"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/remote-collab-prosandcons.md",
"chars": 3843,
"preview": "(cl-mec-remote-collab-prosandcons)=\n# Pros and Cons\n\nIt is needless to say that the same setting can not always work for"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/remote-collab-team.md",
"chars": 2281,
"preview": "(cl-mec-remote-collab-team)=\n# Managing Distributed Teams\n\nIn the {ref}`cl-new-community` and {ref}`Leadership in Data S"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab/remote-collab-useful-resources.md",
"chars": 1605,
"preview": "(cl-mec-remote-collab-useful-resources)=\n# Useful resources\n\nHere are some useful guides, papers and tutorials on how to"
},
{
"path": "book/website/collaboration/meetings-events-co-working/remote-collab.md",
"chars": 1936,
"preview": "(cl-mec-remote-collab)=\n# Remote Collaboration\n\nRemote collaboration refers to the ability to interact and work with oth"
},
{
"path": "book/website/collaboration/meetings-events-co-working.md",
"chars": 226,
"preview": "(cl-mec)=\n# Meetings, Events, & Co-working\n\nThis sub-chapter is about planning, organising, and participating in organis"
},
{
"path": "book/website/collaboration/new-community/new-community-differences.md",
"chars": 4285,
"preview": "(cl-new-community-differences)=\n# Valuing Diversity and Differences\n\nWhen people collaborate with others, no matter if t"
},
{
"path": "book/website/collaboration/new-community/new-community-guide.md",
"chars": 9437,
"preview": "(cl-new-community-guide)=\n# Guide to Planning a Community\n\nWhat if you started a project with a thought like, “I have th"
},
{
"path": "book/website/collaboration/new-community/new-community-teamwork.md",
"chars": 2665,
"preview": "(cl-new-community-teamwork)=\n# Teamwork\nThe widespread standard in academia has been, and still is, to work individually"
},
{
"path": "book/website/collaboration/new-community/new-community-techissues.md",
"chars": 4736,
"preview": "(cm-new-community-techissue)=\n# Addressing Technical Issues\n\nMake sure that you also have plans in place for people who "
},
{
"path": "book/website/collaboration/new-community.md",
"chars": 3371,
"preview": "(cl-new-community)=\n# Managing a New Community and Team\n\nAs researchers, scientists and 'techies' we look for ways to us"
},
{
"path": "book/website/collaboration/oss-sustainability/oss-sustainability-challenges.md",
"chars": 4791,
"preview": "\n\n# Sustainability of Open Source Projects\n\nEarly-stage projects often reach a point when funding has run out for a proj"
},
{
"path": "book/website/collaboration/oss-sustainability/oss-sustainability-examples.md",
"chars": 3771,
"preview": "# Examples of Open Source Business Models\n\nOpen source has been an important theme for AI communities in academia and in"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/community-manager.md",
"chars": 11022,
"preview": "(cl-infrastructure-community-managers)=\n# Research Community Managers: Overview\n\nCommunity Management as a profession wa"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/data-steward-personal-story.md",
"chars": 4989,
"preview": "(cl-infrastructure-data-steward-personal-story)=\n# Data Steward Personal Story\n\n## Introduction\n\nMy name is [Esther Plom"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/data-steward.md",
"chars": 8150,
"preview": "(cl-infrastructure-data-stewards)=\n# Data Stewards: Overview\n\nData Stewards are a growing role within scientific communi"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/data-wrangler.md",
"chars": 8131,
"preview": "(cl-infrastructure-data-wranglers)=\n# Data Wranglers: Overview\n\nData Wranglers can be viewed as a specialised type of da"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/ram.md",
"chars": 4235,
"preview": "(cl-infrastructure-ram)=\n# Research Application Managers: Overview\n\n## Context and the unmet need\n\nAcademic incentives e"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/research-community-manager-personal-story-1.md",
"chars": 7509,
"preview": "(cl-infrastructure-research-community-manager-personal-story-1)=\n# Research Community Manager Personal Story\n\n## Introdu"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/research-infrastructure-developer.md",
"chars": 4299,
"preview": "(cl-infrastructure-rid)=\n# Research Infrastructure Developer: Overview\n\nResearch Infrastructure Developers (RIDs) are ex"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/rse-personal-story.md",
"chars": 12023,
"preview": "(cl-infrastructure-rse-personal-story)=\n# Research Software Engineering Personal Story\n\n## Introduction\n\n\nThe [Society o"
},
{
"path": "book/website/collaboration/research-infrastructure-roles/rse.md",
"chars": 2893,
"preview": "(cl-infrastructure-rse)=\n# Research Software Engineer: Overview\n\nResearch Software Engineers (RSEs) are programmers with"
},
{
"path": "book/website/collaboration/research-infrastructure-roles.md",
"chars": 5372,
"preview": "(cl-research-infrastructure-roles)=\n# Research Infrastructure Roles: Introduction\n\n```{figure} ../../figures/researchers"
},
{
"path": "book/website/collaboration/shared-ownership/shared-ownership-challenges.md",
"chars": 2995,
"preview": "(cl-shared-ownership-challenges)=\n# Challenges with Applying Ownership Models Retroactively\n\nWhile the project ownership"
},
{
"path": "book/website/collaboration/shared-ownership/shared-ownership-defaults.md",
"chars": 5835,
"preview": "(cl-shared-ownership-defaults)=\n# Nudging for a Better Default\n\nResearch has shown that humans making decisions have a s"
},
{
"path": "book/website/collaboration/shared-ownership/shared-ownership-models.md",
"chars": 5570,
"preview": "(cl-shared-ownership-models)=\n# Shared Ownership Models\n\nAt the time of writing this chapter, We have identified the fol"
},
{
"path": "book/website/collaboration/shared-ownership/shared-ownership-projects.md",
"chars": 4685,
"preview": "(cl-shared-ownership-projects)=\n# Project Ownership\n\nBefore we unpack how a project's shared ownership affects research "
},
{
"path": "book/website/collaboration/shared-ownership.md",
"chars": 3277,
"preview": "(cl-shared-ownership)=\n# Shared Ownership in Open Source Projects\n\nOpen source or open research movement allows anybody "
},
{
"path": "book/website/collaboration/stakeholder-engagement.md",
"chars": 16952,
"preview": "(cl-stakeholder-engagement)=\n# Facilitating Stakeholder Engagement\n\nWhen working with stakeholders beyond your own team,"
},
{
"path": "book/website/collaboration/team-manual/team-manual-on-off-boarding.md",
"chars": 3671,
"preview": "(cl-team-manual-on-off-boarding)=\n# On- and offboarding team members\n\nHaving clear onboarding processes ensure that grou"
},
{
"path": "book/website/collaboration/team-manual.md",
"chars": 14063,
"preview": "(cl-team-manual)=\n# Team Manuals\n\nTeam manuals describe expectations for team members, highlight resources and provides "
},
{
"path": "book/website/communication/aa/aa-equitable.md",
"chars": 3495,
"preview": "(cm-aa-equitable)=\n# Large and Equitable Authorships \n\nLarge collaborative projects are becoming more frequent and deali"
},
{
"path": "book/website/communication/aa/aa-misconduct.md",
"chars": 3327,
"preview": "(cm-aa-misconduct)=\n# Types of authorship misconduct\n\nThere are various forms of authorship misconduct. \nThese reflect u"
},
{
"path": "book/website/communication/aa/aa-overview.md",
"chars": 6489,
"preview": "(cm-aa-overview)=\n# Overview of Academic Authorship\n\nA great deal of value is placed on academic authorship because a pe"
},
{
"path": "book/website/communication/aa/aa-resources.md",
"chars": 871,
"preview": "(cm-aa-resources)=\n# Resources: \n* American Journal of Experts [The ethics of manuscript authorship](https://www.aje.com"
},
{
"path": "book/website/communication/aa/aa-stories-community.md",
"chars": 15583,
"preview": "(cm-aa-stories-community)=\n# Personal stories - Large Collaborative Research Community\n\n## Discussion with Remi Gau and "
},
{
"path": "book/website/communication/aa/aa-stories-interdisciplinary.md",
"chars": 8078,
"preview": "(cm-aa-stories-interdisciplinary)=\n# Personal stories - Authorship on Interdisciplinary Projects\n\n## Federico Nanni and "
},
{
"path": "book/website/communication/aa/aa-tips.md",
"chars": 5325,
"preview": "(cm-aa-tips)=\n# Tips for Getting Authorship Right\n\n(cm-aa-tips-who)=\n## Establish who wants to be an author\n\nIt is worth"
},
{
"path": "book/website/communication/aa/aa-traditions.md",
"chars": 6743,
"preview": "(cm-aa-traditions)=\n# Discipline Specific Authorship Traditions\n\nWhen you speak to researchers from different discipline"
},
{
"path": "book/website/communication/aa.md",
"chars": 1646,
"preview": "(cm-aa)=\n# Academic Authorship\n\n(cm-aa-prerequisites)=\n## Prerequisites\n\n| Prerequisite | Importance | Skill Level | Not"
},
{
"path": "book/website/communication/binder/zero-to-binder.md",
"chars": 23424,
"preview": "(z2b)=\n# Zero-to-Binder\n\nIn this chapter, we will create a Binder project from scratch: we will first make a repository "
},
{
"path": "book/website/communication/binder.md",
"chars": 10953,
"preview": "(binder)=\n# Binder\n\nIn this chapter, we will discuss Project Binder and mybinder.org as a means to transparently and int"
},
{
"path": "book/website/communication/blogs/blogs-personal-stories.md",
"chars": 4184,
"preview": "(cm-blogs-personal-stories)=\n# Personal Stories - Blogs\n\n## Veronika Cheplygina: Writing a Successful Blog Series\n\n**Dr "
},
{
"path": "book/website/communication/blogs/blogs-webpage.md",
"chars": 2807,
"preview": "(cm-blogs-webpage)=\n# Building a Webpage for Blogs\n\nMaking a website for a blog is easier than you think so don't be put"
},
{
"path": "book/website/communication/blogs.md",
"chars": 4245,
"preview": "(cm-blogs)=\n# Blogs for Research Communication\n\nA blog is a website that contains informal articles, usually with a cent"
},
{
"path": "book/website/communication/citable/citable-cff.md",
"chars": 10063,
"preview": "(cm-citable-cff)=\n# Software Citation with CITATION.cff\n\nThe [Citation File Format](https://citation-file-format.github."
},
{
"path": "book/website/communication/citable/citable-cffinit.md",
"chars": 5275,
"preview": "(cm-citable-cffinit)=\n# Create a `CITATION.cff` using `cffinit`\n\n`cffinit` is a web application which helps users create"
},
{
"path": "book/website/communication/citable/citable-cite.md",
"chars": 9610,
"preview": "(cm-citable-cite)=\n# Citing your own Research Objects\n\nWhen citing your own research objects, it is important to conside"
},
{
"path": "book/website/communication/citable/citable-linking.md",
"chars": 5207,
"preview": "(cm-citable-linking)=\n\n# Linking Research Objects\n\nLinking your data, code and article will ensure that you receive **cr"
},
{
"path": "book/website/communication/citable/citable-metadata.md",
"chars": 13989,
"preview": "(cm-citable-metadata)=\n\n# Connection Metadata: Creating Rich Linkages\n\nThe strategies above describe when and how to pub"
},
{
"path": "book/website/communication/citable/citable-orcid.md",
"chars": 3206,
"preview": "(cm-citable-orcid)=\n# ORCID to Collect your Research Objects\n\nYou can use ORCID to access or sign up to services that ut"
},
{
"path": "book/website/communication/citable/citable-otherscite.md",
"chars": 5295,
"preview": "(cm-citable-otherscite)=\n# Citing other people's Research Objects\n\nWhen citing research objects from other people/resear"
},
{
"path": "book/website/communication/citable/citable-resources.md",
"chars": 1566,
"preview": "(cm-citable-checklist)=\n# Checklists and Resources\n\n(cm-citable-checklist-authors)=\n## Checklist For Authors\n\n- Pick out"
},
{
"path": "book/website/communication/citable/citable-steps.md",
"chars": 5419,
"preview": "(cm-citable-steps)=\n# Steps for Making Research Objects Citable\n\nThere are many reasons why authors don't cite the data,"
},
{
"path": "book/website/communication/citable/citable-versioning.md",
"chars": 4142,
"preview": "(cm-citable-linking-versions)=\n# Managing Versions Through PIDs\n\nResearch outputs often evolve over time: you might fix "
},
{
"path": "book/website/communication/citable.md",
"chars": 3523,
"preview": "(cm-citable)=\n# Making Research Objects Citable\n\n## Prerequisites / recommended skill level\n\n| Prerequisite | Importanc"
},
{
"path": "book/website/communication/comms-overview/comms-overview-accessibly.md",
"chars": 4684,
"preview": "(cm-comms-overview-accessibly)=\n# Communicating Accessibly\n\nAccessibility of your writing or presentation is more than j"
},
{
"path": "book/website/communication/comms-overview/comms-overview-principles.md",
"chars": 1805,
"preview": "(cm-comms-overview-principles)=\n# Principles of Communicating with Wider Audiences\n\nResearchers should consider communic"
},
{
"path": "book/website/communication/comms-overview/comms-overview-resources.md",
"chars": 5343,
"preview": "(cm-comms-overview-resources)=\n# Resources and Recommendations\n\n(cm-comms-overview-resources-accessibility)=\n## Accessib"
},
{
"path": "book/website/communication/comms-overview.md",
"chars": 2971,
"preview": "(cm-comms-overview)=\n# Overview of the Guide for Communication\n\nResearch projects, publications and communities are eval"
},
{
"path": "book/website/communication/communication.md",
"chars": 2318,
"preview": "(cm)=\n# Guide for Communication\n\n***This guide covers topics related to effective communication in research.***\n\nData an"
},
{
"path": "book/website/communication/dif-articles/data.md",
"chars": 7609,
"preview": "(cm-dif-articles-data)=\n# Data Papers\n\n(cm-dif-articles-data-what)=\n## What are Data Papers?\n\nThe purpose of a data pape"
},
{
"path": "book/website/communication/dif-articles/methods.md",
"chars": 3011,
"preview": "(cm-dif-articles-methods)=\n# Methods Papers \n\n(cm-dif-articles-methods-what)=\n## What are Methods Papers?\n\nSimply put me"
},
{
"path": "book/website/communication/dif-articles/micro.md",
"chars": 3435,
"preview": "\n(cm-dif-articles-micropublishing)=\n# Micropublishing\n\n(cm-dif-articles-micropublishing-what)=\n## What is Micropublishin"
},
{
"path": "book/website/communication/dif-articles/reg.md",
"chars": 9457,
"preview": "(cm-dif-articles-registered-reports)=\n# Registered Reports\n\n(cm-dif-articles-registered-reports-what)=\n## What are Regis"
},
{
"path": "book/website/communication/dif-articles/software.md",
"chars": 4053,
"preview": "(cm-dif-articles-software)=\n# Software Papers \n\n(cm-dif-articles-software-what)=\n## What are Software Papers?\n\nIn compar"
},
{
"path": "book/website/communication/dif-articles.md",
"chars": 3328,
"preview": "(cm-dif-articles)=\n# Publishing Different Article Types\n\n\n```{figure} ../../figures/publishing-diff-articles.*\n---\nheigh"
}
]
// ... and 375 more files (download for full content)
About this extraction
This page contains the full source code of the the-turing-way/the-turing-way GitHub repository, extracted and formatted as plain text for AI agents and large language models (LLMs). The extraction includes 575 files (4.4 MB), approximately 1.2M tokens, and a symbol index with 28 extracted functions, classes, methods, constants, and types. Use this with OpenClaw, Claude, ChatGPT, Cursor, Windsurf, or any other AI tool that accepts text input. You can copy the full output to your clipboard or download it as a .txt file.
Extracted by GitExtract — free GitHub repo to text converter for AI. Built by Nikandr Surkov.