SYMBOL INDEX (210 symbols across 29 files)

FILE: causaldag/datasets/__init__.py
  function create_synthetic_difference (line 7) | def create_synthetic_difference(

FILE: causaldag/loaders.py
  function load_gml (line 5) | def load_gml(filename):

FILE: profiling/compare_all_dags.py
  function run_all_dags (line 14) | def run_all_dags():
  function run_all_dags2 (line 27) | def run_all_dags2():

FILE: profiling/profile_cpdag.py
  function compute_cpdags_new (line 16) | def compute_cpdags_new():
  function compute_cpdags (line 20) | def compute_cpdags():

FILE: profiling/profile_gsp.py
  function run_gsp (line 23) | def run_gsp():

FILE: profiling/profile_hsic.py
  function run_hsic_test (line 19) | def run_hsic_test():

FILE: profiling/profile_igsp.py
  function run_igsp (line 23) | def run_igsp():

FILE: profiling/profile_init.py
  function init_new (line 21) | def init_new():
  function init (line 25) | def init():

FILE: profiling/profile_pc.py
  function run_pc (line 20) | def run_pc():

FILE: profiling/time_create_graph.py
  function test_create_nx_small (line 7) | def test_create_nx_small():
  function test_create_dag_small (line 16) | def test_create_dag_small():
  function test_create_nx_large (line 35) | def test_create_nx_large():
  function test_create_dag_large (line 44) | def test_create_dag_large():
  function test_diff (line 51) | def test_diff():
  function test_all_at_once (line 57) | def test_all_at_once():

FILE: profiling/time_dec.py
  function timed (line 5) | def timed(func):

FILE: sphinx_docs/_build/html/_static/doctools.js
  function highlight (line 69) | function highlight(node, addItems) {

FILE: sphinx_docs/_build/html/_static/jquery.js
  function DOMEval (line 97) | function DOMEval( code, doc, node ) {
  function toType (line 115) | function toType( obj ) {
  function isArrayLike (line 484) | function isArrayLike( obj ) {
  function Sizzle (line 716) | function Sizzle( selector, context, results, seed ) {
  function createCache (line 855) | function createCache() {
  function markFunction (line 873) | function markFunction( fn ) {
  function assert (line 882) | function assert( fn ) {
  function addHandle (line 904) | function addHandle( attrs, handler ) {
  function siblingCheck (line 919) | function siblingCheck( a, b ) {
  function createInputPseudo (line 945) | function createInputPseudo( type ) {
  function createButtonPseudo (line 956) | function createButtonPseudo( type ) {
  function createDisabledPseudo (line 967) | function createDisabledPseudo( disabled ) {
  function createPositionalPseudo (line 1023) | function createPositionalPseudo( fn ) {
  function testContext (line 1046) | function testContext( context ) {
  function setFilters (line 2128) | function setFilters() {}
  function toSelector (line 2199) | function toSelector( tokens ) {
  function addCombinator (line 2209) | function addCombinator( matcher, combinator, base ) {
  function elementMatcher (line 2273) | function elementMatcher( matchers ) {
  function multipleContexts (line 2287) | function multipleContexts( selector, contexts, results ) {
  function condense (line 2296) | function condense( unmatched, map, filter, context, xml ) {
  function setMatcher (line 2317) | function setMatcher( preFilter, selector, matcher, postFilter, postFinde...
  function matcherFromTokens (line 2410) | function matcherFromTokens( tokens ) {
  function matcherFromGroupMatchers (line 2468) | function matcherFromGroupMatchers( elementMatchers, setMatchers ) {
  function nodeName (line 2804) | function nodeName( elem, name ) {
  function winnow (line 2814) | function winnow( elements, qualifier, not ) {
  function sibling (line 3109) | function sibling( cur, dir ) {
  function createOptions (line 3196) | function createOptions( options ) {
  function Identity (line 3421) | function Identity( v ) {
  function Thrower (line 3424) | function Thrower( ex ) {
  function adoptValue (line 3428) | function adoptValue( value, resolve, reject, noValue ) {
  function resolve (line 3521) | function resolve( depth, deferred, handler, special ) {
  function completed (line 3886) | function completed() {
  function fcamelCase (line 3981) | function fcamelCase( all, letter ) {
  function camelCase (line 3988) | function camelCase( string ) {
  function Data (line 4005) | function Data() {
  function getData (line 4174) | function getData( data ) {
  function dataAttr (line 4199) | function dataAttr( elem, key, data ) {
  function adjustCSS (line 4512) | function adjustCSS( elem, prop, valueParts, tween ) {
  function getDefaultDisplay (line 4579) | function getDefaultDisplay( elem ) {
  function showHide (line 4602) | function showHide( elements, show ) {
  function getAll (line 4703) | function getAll( context, tag ) {
  function setGlobalEval (line 4728) | function setGlobalEval( elems, refElements ) {
  function buildFragment (line 4744) | function buildFragment( elems, context, scripts, selection, ignored ) {
  function returnTrue (line 4867) | function returnTrue() {
  function returnFalse (line 4871) | function returnFalse() {
  function safeActiveElement (line 4877) | function safeActiveElement() {
  function on (line 4883) | function on( elem, types, selector, data, fn, one ) {
  function manipulationTarget (line 5611) | function manipulationTarget( elem, content ) {
  function disableScript (line 5622) | function disableScript( elem ) {
  function restoreScript (line 5626) | function restoreScript( elem ) {
  function cloneCopyEvent (line 5636) | function cloneCopyEvent( src, dest ) {
  function fixInput (line 5671) | function fixInput( src, dest ) {
  function domManip (line 5684) | function domManip( collection, args, callback, ignored ) {
  function remove (line 5774) | function remove( elem, selector, keepData ) {
  function computeStyleTests (line 6067) | function computeStyleTests() {
  function roundPixelMeasures (line 6109) | function roundPixelMeasures( measure ) {
  function curCSS (line 6154) | function curCSS( elem, name, computed ) {
  function addGetHookIf (line 6207) | function addGetHookIf( conditionFn, hookFn ) {
  function vendorPropName (line 6244) | function vendorPropName( name ) {
  function finalPropName (line 6265) | function finalPropName( name ) {
  function setPositiveNumber (line 6273) | function setPositiveNumber( elem, value, subtract ) {
  function boxModelAdjustment (line 6285) | function boxModelAdjustment( elem, dimension, box, isBorderBox, styles, ...
  function getWidthOrHeight (line 6350) | function getWidthOrHeight( elem, dimension, extra ) {
  function Tween (line 6683) | function Tween( elem, options, prop, end, easing ) {
  function schedule (line 6806) | function schedule() {
  function createFxNow (line 6819) | function createFxNow() {
  function genFx (line 6827) | function genFx( type, includeWidth ) {
  function createTween (line 6847) | function createTween( value, prop, animation ) {
  function defaultPrefilter (line 6861) | function defaultPrefilter( elem, props, opts ) {
  function propFilter (line 7033) | function propFilter( props, specialEasing ) {
  function Animation (line 7070) | function Animation( elem, properties, options ) {
  function stripAndCollapse (line 7785) | function stripAndCollapse( value ) {
  function getClass (line 7791) | function getClass( elem ) {
  function classesToArray (line 7795) | function classesToArray( value ) {
  function buildParams (line 8417) | function buildParams( prefix, obj, traditional, add ) {
  function addToPrefiltersOrTransports (line 8567) | function addToPrefiltersOrTransports( structure ) {
  function inspectPrefiltersOrTransports (line 8601) | function inspectPrefiltersOrTransports( structure, options, originalOpti...
  function ajaxExtend (line 8630) | function ajaxExtend( target, src ) {
  function ajaxHandleResponses (line 8650) | function ajaxHandleResponses( s, jqXHR, responses ) {
  function ajaxConvert (line 8708) | function ajaxConvert( s, response, jqXHR, isSuccess ) {
  function done (line 9221) | function done( status, nativeStatusText, responses, headers ) {

FILE: sphinx_docs/_build/html/_static/js/badge_only.js
  function r (line 1) | function r(n){if(t[n])return t[n].exports;var o=t[n]={i:n,l:!1,exports:{...

FILE: sphinx_docs/_build/html/_static/js/theme.js
  function t (line 1) | function t(i){if(e[i])return e[i].exports;var o=e[i]={i:i,l:!1,exports:{...

FILE: sphinx_docs/_build/html/_static/language_data.js
  function splitQuery (line 278) | function splitQuery(query) {

FILE: sphinx_docs/_build/html/_static/searchtools.js
  function splitQuery (line 45) | function splitQuery(query) {
  function pulse (line 102) | function pulse() {
  function displayNextItem (line 233) | function displayNextItem() {

FILE: tests/test_ci_tests.py
  class TestKCI (line 13) | class TestKCI(TestCase):
    method test_hsic_invariance_cond_set_false_negatives (line 124) | def test_hsic_invariance_cond_set_false_negatives(self):

FILE: tests/test_classes/test_ancestral_graph.py
  class TestAncestralGraph (line 12) | class TestAncestralGraph(TestCase):
    method setUp (line 13) | def setUp(self):
    method test_children (line 16) | def test_children(self):
    method test_parents (line 22) | def test_parents(self):
    method test_spouses (line 28) | def test_spouses(self):
    method test_neighbors (line 34) | def test_neighbors(self):
    method test_add_node (line 40) | def test_add_node(self):
    method test_add_directed (line 44) | def test_add_directed(self):
    method test_msep_from_given (line 86) | def test_msep_from_given(self):
    method test_msep (line 91) | def test_msep(self):
    method test_disc_paths (line 152) | def test_disc_paths(self):
    method test_legitimate_mark_changes (line 166) | def test_legitimate_mark_changes(self):
    method test_ancestor_dict (line 179) | def test_ancestor_dict(self):
    method test_fast_markov_equivalence_simple (line 188) | def test_fast_markov_equivalence_simple(self):
    method test_fast_markov_equivalence_all (line 196) | def test_fast_markov_equivalence_all(self):

FILE: tests/test_classes/test_dag.py
  class TestDAG (line 7) | class TestDAG(TestCase):
    method setUp (line 8) | def setUp(self):
    method test_neighbors (line 11) | def test_neighbors(self):
    method test_children (line 18) | def test_children(self):
    method test_parents (line 25) | def test_parents(self):
    method test_downstream (line 32) | def test_downstream(self):
    method test_upstream (line 39) | def test_upstream(self):
    method test_sources (line 46) | def test_sources(self):
    method test_sinks (line 49) | def test_sinks(self):
    method test_add_node (line 52) | def test_add_node(self):
    method test_add_arc (line 56) | def test_add_arc(self):
    method test_topological_sort (line 65) | def test_topological_sort(self):
    method test_add_arc_cycle (line 71) | def test_add_arc_cycle(self):
    method test_interventional_cpdag_2node (line 81) | def test_interventional_cpdag_2node(self):
    method test_interventional_cpdag_3node (line 90) | def test_interventional_cpdag_3node(self):
    method test_incident_arcs (line 110) | def test_incident_arcs(self):
    method test_shd (line 117) | def test_shd(self):
    method test_dsep (line 133) | def test_dsep(self):
    method test_is_invariant (line 150) | def test_is_invariant(self):
    method test_marginal_mag (line 160) | def test_marginal_mag(self):
    method test_markov_blanket (line 167) | def test_markov_blanket(self):

FILE: tests/test_classes/test_dag_basics.py
  class TestDAG (line 7) | class TestDAG(TestCase):
    method setUp (line 8) | def setUp(self):
    method test_neighbors (line 11) | def test_neighbors(self):
    method test_children (line 18) | def test_children(self):
    method test_parents (line 25) | def test_parents(self):
    method test_downstream (line 32) | def test_downstream(self):
    method test_upstream (line 39) | def test_upstream(self):
    method test_add_node (line 46) | def test_add_node(self):
    method test_add_arc (line 50) | def test_add_arc(self):
    method test_topological_sort (line 59) | def test_topological_sort(self):
    method test_add_arc_cycle (line 65) | def test_add_arc_cycle(self):
    method test_amat (line 81) | def test_amat(self):
    method test_incident_arcs (line 89) | def test_incident_arcs(self):

FILE: tests/test_classes/test_pdag.py
  class TestDAG (line 11) | class TestDAG(TestCase):
    method test_copy (line 12) | def test_copy(self):
    method test_cpdag_confounding (line 27) | def test_cpdag_confounding(self):
    method test_cpdag_v (line 53) | def test_cpdag_v(self):
    method test_interventional_cpdag (line 127) | def test_interventional_cpdag(self):
    method test_pdag2alldags_3nodes_complete (line 146) | def test_pdag2alldags_3nodes_complete(self):
    method test_pdag2alldags_3nodes_chain (line 163) | def test_pdag2alldags_3nodes_chain(self):
    method test_pdag2alldags_5nodes (line 174) | def test_pdag2alldags_5nodes(self):
    method test_pdag2alldags_6nodes_complete (line 187) | def test_pdag2alldags_6nodes_complete(self):
    method test_icpdag2alldags (line 193) | def test_icpdag2alldags(self):
    method test_optimal_intervention_1intervention (line 199) | def test_optimal_intervention_1intervention(self):
    method test_optimal_intervention_2interventions (line 205) | def test_optimal_intervention_2interventions(self):
    method test_optimal_intervention_2interventions2 (line 212) | def test_optimal_intervention_2interventions2(self):
    method test_fully_orienting_interventions_6nodes_complete (line 219) | def test_fully_orienting_interventions_6nodes_complete(self):
    method test_to_dag (line 223) | def test_to_dag(self):
    method test_to_dag_complete3 (line 234) | def test_to_dag_complete3(self):
    method test_from_amat (line 259) | def test_from_amat(self):
    method test_shd (line 269) | def test_shd(self):
    method test_to_complete_pdag (line 305) | def test_to_complete_pdag(self):

FILE: tests/test_gaussdag.py
  class TestGaussDAG (line 8) | class TestGaussDAG(TestCase):
    method setUp (line 9) | def setUp(self):
    method test_arcs (line 16) | def test_arcs(self):
    method test_add_node (line 19) | def test_add_node(self):
    method test_add_arc (line 22) | def test_add_arc(self):
    method test_remove_node (line 25) | def test_remove_node(self):
    method test_remove_arc (line 28) | def test_remove_arc(self):
    method test_logpdf_observational (line 41) | def test_logpdf_observational(self):

FILE: tests/test_id_formula.py
  class TestIDFormula (line 6) | class TestIDFormula(TestCase):
    method test_marginalizing_probability_term (line 7) | def test_marginalizing_probability_term(self):
    method test_marginalizing_prob_term_twice (line 17) | def test_marginalizing_prob_term_twice(self):
    method test_conditioning_probability_term (line 39) | def test_conditioning_probability_term(self):
    method test_marginalizing_product (line 53) | def test_marginalizing_product(self):
    method test_conditioning_product (line 62) | def test_conditioning_product(self):
    method test_marginalizing_marginal (line 71) | def test_marginalizing_marginal(self):
    method test_conditioning_marginal (line 89) | def test_conditioning_marginal(self):

FILE: tests/test_interventions.py
  class TestDAG (line 10) | class TestDAG(TestCase):
    method setUp (line 11) | def setUp(self):
    method test_arcs (line 18) | def test_arcs(self):
    method test_add_node (line 21) | def test_add_node(self):
    method test_add_arc (line 24) | def test_add_arc(self):
    method test_remove_node (line 27) | def test_remove_node(self):
    method test_remove_arc (line 30) | def test_remove_arc(self):
    method test_scaling_intervention (line 97) | def test_scaling_intervention(self):
    method test_mixed_interventions (line 145) | def test_mixed_interventions(self):

FILE: tests/test_scores/test_bge_score.py
  class TestBGEScore (line 13) | class TestBGEScore(TestCase):
    method test_1 (line 14) | def test_1(self):

FILE: tests/test_scores/test_max_likelihood.py
  class TestDAG (line 7) | class TestDAG(TestCase):
    method test1 (line 8) | def test1(self):

FILE: tests/test_structure_learning/test_gsp.py
  class TestGSP (line 18) | class TestGSP(TestCase):
    method test_gsp (line 19) | def test_gsp(self):

FILE: tests/test_structure_learning/test_pcalg.py
  class TestDAG (line 7) | class TestDAG(TestCase):
    method test_cpdag_confounding (line 8) | def test_cpdag_confounding(self):