SYMBOL INDEX (43 symbols across 6 files)

FILE: metatime/annotator.py
  function annotator (line 18) | def annotator( dat: Union[pd.DataFrame, anndata.AnnData],
  function overcluster (line 86) | def overcluster(adata: anndata.AnnData,
  function pdataToTable (line 117) | def pdataToTable( pdata: anndata.AnnData,
  function saveToAdata (line 163) | def saveToAdata( adata : anndata.AnnData,
  function saveToPdata (line 201) | def saveToPdata( pdata : anndata.AnnData,

FILE: metatime/dmec.py
  function _get_score_pd (line 14) | def _get_score_pd( adata, meccols ):
  function count_cell_condition (line 31) | def count_cell_condition( obs,  countbycols : list):
  function enrich_mec_cluster (line 52) | def enrich_mec_cluster(  labeltype, adata, labelcol , meccols , mecnamed...
  function enrich_mec (line 80) | def enrich_mec( adata , labelcol , mecnamedict ):
  function cohend (line 122) | def cohend( x1, x2 ):
  function test_sig_smallcluster (line 127) | def test_sig_smallcluster(Xproj, meci, cellscond1, cellscond2, test_meth...
  function plot_top1mec (line 145) | def plot_top1mec( adata, mec_enriched , legend_loc ='on data'):
  function dmec (line 152) | def dmec( adata,
  function plotdata_diffmec (line 241) | def plotdata_diffmec( diffmec, mecnamedict):
  function plot_diffmec (line 269) | def plot_diffmec( diffmec, mecnamedict):
  function topdiff_df (line 321) | def topdiff_df(diffmec,
  function plot_topdiff (line 368) | def plot_topdiff( diffmec, fontsize = 5 ,

FILE: metatime/loaddata.py
  function isRawCount (line 13) | def isRawCount( ds ):
  function adatapp (line 40) | def adatapp(
  function load (line 134) | def load(
  function batchharmonize (line 190) | def batchharmonize(
  function add_extra_metainfo (line 243) | def add_extra_metainfo( adata, meta ):

FILE: metatime/mecmapper.py
  function projectMec (line 12) | def projectMec(expr, mec, glstcol = 'TopGene20'):
  function annToDataFrame (line 58) | def annToDataFrame( adata_input, genescaling = False,  layer = 'norm_dat...
  function scale (line 88) | def scale(df):
  function projectMecAnn (line 92) | def projectMecAnn( adata_input,
  function projectModuleAnn_aucell (line 155) | def projectModuleAnn_aucell( adata, module, glstcol = 'TopGene20'):

FILE: metatime/mecs.py
  function load_mecname (line 13) | def load_mecname( mode='table',
  function getmecnamedict_ct (line 47) | def getmecnamedict_ct( mectable, only_include_mecs_UseForCellStateAnno =...
  class MetatimeMecs (line 72) | class MetatimeMecs():
    method __init__ (line 91) | def __init__(self, mec_score, mec_topg, mec_anno ) :
    method load_mec_precomputed (line 97) | def load_mec_precomputed(  mecDIR = config.SCMECDIR, ):
    method feature (line 132) | def feature(self) -> np.ndarray:
    method nmecs (line 137) | def nmecs(self) -> np.float:

FILE: metatime/plmapper.py
  class MidpointNormalize (line 15) | class MidpointNormalize(colors.Normalize):
    method __init__ (line 32) | def __init__(self, vmin=None, vmax=None, midpoint=None, clip=False):
    method __call__ (line 36) | def __call__(self, value, clip=None):
  function plot_umap_proj (line 43) | def plot_umap_proj( adata : anndata.AnnData,
  function plot_umap_proj_pdata (line 108) | def plot_umap_proj_pdata( pdata, mecnamedict,
  function plot_umap_mec (line 145) | def plot_umap_mec(pdata : anndata.AnnData,
  function plot_umap_mecproj_2condition (line 193) | def plot_umap_mecproj_2condition( pdata, meccol, mecnamedict,
  function gen_mpl_labels (line 259) | def gen_mpl_labels(
  function plot_annotation_on_data (line 286) | def plot_annotation_on_data(