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Repository: RomeroBarata/skeleton_based_anomaly_detection
Branch: master
Commit: 37c3203866d1
Files: 110
Total size: 626.7 KB

Directory structure:
gitextract_xhfl4dwo/

├── .gitignore
├── README.md
├── environment.yml
├── evaluate.py
├── pretrained/
│   └── CVPR19/
│       ├── Avenue/
│       │   └── combined_model/
│       │       └── _mp_Grobust_Lrobust_Orobust_concatdown_/
│       │           └── 01_2018_11_13_06_36_20/
│       │               ├── architecture.txt
│       │               ├── global_scaler.pkl
│       │               ├── local_scaler.pkl
│       │               ├── out_scaler.pkl
│       │               ├── training_report.csv
│       │               └── weights_082_0.18.h5
│       └── ShanghaiTech/
│           └── combined_model/
│               └── _mp_Grobust_Lrobust_Orobust_concatdown_/
│                   ├── 01_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 02_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 03_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 04_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 05_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 06_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 07_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 08_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 09_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 10_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 11_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   └── 12_2018_11_09_10_55_13/
│                       ├── architecture.txt
│                       ├── global_scaler.pkl
│                       ├── local_scaler.pkl
│                       ├── out_scaler.pkl
│                       ├── training_report.csv
│                       └── weights_065_0.14.h5
├── tbad/
│   ├── __init__.py
│   ├── autoencoder/
│   │   ├── __init__.py
│   │   ├── autoencoder.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   └── train.py
│   ├── combined_model/
│   │   ├── __init__.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   ├── fusion.py
│   │   ├── message_passing.py
│   │   └── train.py
│   ├── data.py
│   ├── eval.py
│   ├── gpu.py
│   ├── losses.py
│   ├── rnn_autoencoder/
│   │   ├── __init__.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   ├── rnn.py
│   │   └── train.py
│   ├── train.py
│   ├── utils.py
│   └── visualisation.py
├── train.py
├── utils/
│   ├── metrics.py
│   └── score_scaling.py
└── visualise.py

================================================
FILE CONTENTS
================================================

================================================
FILE: .gitignore
================================================
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
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lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
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nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don’t work, or not
#   install all needed dependencies.
#Pipfile.lock

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
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ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/


================================================
FILE: README.md
================================================
This is the code for the CVPR'19 paper ["Learning Regularity in Skeleton Trajectories for Anomaly Detection in Videos".](https://openaccess.thecvf.com/content_CVPR_2019/html/Morais_Learning_Regularity_in_Skeleton_Trajectories_for_Anomaly_Detection_in_Videos_CVPR_2019_paper.html)

# Environment Setup
First please create an appropriate environment using conda: 

> conda env create -f environment.yml

> conda activate tbad

# Download Data
Due to space constraints in the Github repository, please download the data from the following link and place the `data` folder in this directory.

Link: [trajectories](https://bit.ly/2TWCxFY)

# Test Pre-Trained Models
To evaluate pre-trained models run the evaluate.py script.
Some examples:

#### Evaluate MPED-RNN on all cameras individually and all cameras combined on HR-ShanghaiTech.
> python evaluate.py --gpu_ids 0 --gpu_memory 0.2 combined_models ./pretrained/CVPR19/ShanghaiTech/combined_model/\_mp_Grobust_Lrobust_Orobust_concatdown\_
 ./data/HR-ShanghaiTech/testing/trajectories ./data/HR-ShanghaiTech/testing/frame_level_masks --video_resolution 856x480 --overlapping_trajectories

#### Evaluate MPED-RNN on HR-Avenue.
> python evaluate.py --gpu_ids 0 --gpu_memory 0.2 combined_model ./pretrained/CVPR19/Avenue/combined_model/\_mp_Grobust_Lrobust_Orobust_concatdown\_/01_2018_11_13_06_36_20 
./data/HR-Avenue/testing/trajectories/01 ./data/HR-Avenue/testing/frame_level_masks/01 --video_resolution 640x360 --overlapping_trajectories

# Train Models from Scratch
To train a model from scratch you should look up the model's configuration options using the option --help on the training.py script. Here is one example:

#### Train MPED-RNN on the ShanghaiTech data set.
> python train.py --gpu_ids 0 --gpu_memory 0.1 combined_model ./data/HR-ShanghaiTech/training/trajectories/00 
--video_resolution 856x480 --message_passing --reconstruct_original_data --multiple_outputs --multiple_outputs_before_concatenation --input_length 12
 --rec_length 12 --pred_length 6 --reconstruct_reverse --cell gru --global_hidden 8 --local_hidden 16 --output_activation linear 
 --optimiser adam --learning_rate 0.001 --loss mse --epochs 5 --batch_size 256 --global_normalisation robust --local_normalisation robust 
 --out_normalisation robust

================================================
FILE: environment.yml
================================================
name: tbad
channels:
  - defaults
dependencies:
  - _tflow_180_select=1.0=gpu
  - absl-py=0.2.2=py36_0
  - astor=0.6.2=py36_0
  - blas=1.0=mkl
  - bleach=1.5.0=py36_0
  - bzip2=1.0.6=h14c3975_5
  - ca-certificates=2018.03.07=0
  - cairo=1.14.12=h7636065_2
  - certifi=2018.10.15=py36_0
  - cloudpickle=0.6.1=py36_0
  - cudatoolkit=9.0=h13b8566_0
  - cudnn=7.1.2=cuda9.0_0
  - cupti=9.0.176=0
  - cycler=0.10.0=py36h93f1223_0
  - dask-core=0.20.1=py36_0
  - dbus=1.13.2=h714fa37_1
  - decorator=4.3.0=py36_0
  - expat=2.2.5=he0dffb1_0
  - ffmpeg=4.0=h04d0a96_0
  - fontconfig=2.12.6=h49f89f6_0
  - freetype=2.8=hab7d2ae_1
  - gast=0.2.0=py36_0
  - glib=2.56.1=h000015b_0
  - graphite2=1.3.11=h16798f4_2
  - grpcio=1.12.0=py36hdbcaa40_0
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  - harfbuzz=1.7.6=h5f0a787_1
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  - icu=58.2=h9c2bf20_1
  - imageio=2.4.1=py36_0
  - intel-openmp=2018.0.3=0
  - jasper=1.900.1=hd497a04_4
  - jpeg=9b=h024ee3a_2
  - keras=2.1.6=py36_0
  - kiwisolver=1.0.1=py36h764f252_0
  - libedit=3.1.20170329=h6b74fdf_2
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  - openssl=1.0.2p=h14c3975_0
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  - pillow=5.1.0=py36h3deb7b8_0
  - pip=10.0.1=py36_0
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    - nibabel==2.3.0
    - pandas==0.23.4
    - pyzmq==17.1.2
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    - urllib3==1.23
    - visdom==0.1.8.5
    - websocket-client==0.52.0



================================================
FILE: evaluate.py
================================================
import argparse

from tbad.autoencoder.evaluate import eval_ae, eval_aes
from tbad.rnn_autoencoder.evaluate import eval_rnn_ae, eval_rnn_aes
from tbad.combined_model.evaluate import eval_combined_model, eval_combined_models
from tbad.gpu import configure_gpu_resources


def create_arg_parser():
    parser = argparse.ArgumentParser(description='Functions for Evaluation of Trained Trajectory-Based Anomaly Models.')

    gp_gpu = parser.add_argument_group('GPU')
    gp_gpu.add_argument('--gpu_ids', default='0', type=str, help='Which GPUs to use.')
    gp_gpu.add_argument('--gpu_memory_fraction', default=0.20, type=float,
                        help='Fraction of the memory to grab from each GPU.')

    subparsers = parser.add_subparsers(title='sub-commands', description='Valid sub-commands.')

    # Create sub-parser for evaluation of a pre-trained Autoencoder model
    parser_ae = subparsers.add_parser('autoencoder',
                                      help='Evaluate a Trained Autoencoder Model.')
    parser_ae.add_argument('pretrained_model', type=str,
                           help='Directory containing pre-trained model architecture definition, model weights and '
                                'data scaler.')
    parser_ae.add_argument('trajectories', type=str,
                           help='Directory containing skeleton\'s trajectories.')
    parser_ae.add_argument('frame_level_anomaly_masks', type=str,
                           help='Directory containing .npy files for each video in the specific camera.')
    parser_ae.add_argument('--video_resolution', default='856x480', type=str,
                           help='Resolution of the trajectories\' original video(s). It should be specified '
                                'as WxH, where W is the width and H the height of the video.')

    parser_ae.set_defaults(func=eval_ae)

    # Create sub-parser for evaluation of multiple pre-trained Autoencoder models
    parser_aes = subparsers.add_parser('autoencoders',
                                       help='Evaluate Several Trained Autoencoder Models.')
    parser_aes.add_argument('pretrained_models', type=str,
                            help='Directory containing a folder for each pre-trained model.')
    parser_aes.add_argument('all_trajectories', type=str,
                            help='Directory containing a folder for each camera, where each folder contains the '
                                 'trajectories for the associated camera.')
    parser_aes.add_argument('all_frame_level_anomaly_masks', type=str,
                            help='Directory containing a folder for the anomaly masks of each camera.')
    parser_aes.add_argument('--video_resolution', default='856x480', type=str,
                            help='Resolution of the trajectories\' original video(s). It should be specified '
                                 'as WxH, where W is the width and H the height of the video.')

    parser_aes.set_defaults(func=eval_aes)

    # Create sub-parser for evaluation of a pre-trained RNN Autoencoder model
    parser_rnn_ae = subparsers.add_parser('rnn_autoencoder', help='Evaluate a Trained RNN Autoencoder model.')
    parser_rnn_ae.add_argument('pretrained_model', type=str,
                               help='Directory containing pre-trained model architecture definition, model weights and '
                                    'data scaler.')
    parser_rnn_ae.add_argument('trajectories', type=str,
                               help='Directory containing skeleton\'s trajectories.')
    parser_rnn_ae.add_argument('frame_level_anomaly_masks', type=str,
                               help='Directory containing .npy files for each video in the specific camera.')
    parser_rnn_ae.add_argument('--video_resolution', default='856x480', type=str,
                               help='Resolution of the trajectories\' original video(s). It should be specified '
                                    'as WxH, where W is the width and H the height of the video.')
    parser_rnn_ae.add_argument('--overlapping_trajectories', action='store_true')

    gp_rnn_ae_logging = parser_rnn_ae.add_argument_group('Evaluation Logging')
    gp_rnn_ae_logging.add_argument('--write_reconstructions', type=str,
                                   help='TO DO')

    parser_rnn_ae.set_defaults(func=eval_rnn_ae)

    # Create sub-parser for evaluation of multiple pre-trained RNN Autoencoder models
    parser_rnn_aes = subparsers.add_parser('rnn_autoencoders',
                                           help='Evaluate Multiple Pre-Trained RNN Autoencoder models.')
    parser_rnn_aes.add_argument('pretrained_models', type=str,
                                help='Directory containing a folder for each pre-trained model.')
    parser_rnn_aes.add_argument('all_trajectories', type=str,
                                help='Directory containing a folder for each camera, where each folder contains the '
                                     'trajectories for the associated camera.')
    parser_rnn_aes.add_argument('all_frame_level_anomaly_masks', type=str,
                                help='Directory containing a folder for the anomaly masks of each camera.')
    parser_rnn_aes.add_argument('--video_resolution', default='856x480', type=str,
                                help='Resolution of the trajectories\' original video(s). It should be specified '
                                     'as WxH, where W is the width and H the height of the video.')
    parser_rnn_aes.add_argument('--overlapping_trajectories', action='store_true')

    gp_rnn_aes_logging = parser_rnn_aes.add_argument_group('Evaluation Logging')
    gp_rnn_aes_logging.add_argument('--write_reconstructions', type=str,
                                    help='TO DO')

    parser_rnn_aes.set_defaults(func=eval_rnn_aes)

    # Create a sub-parser for evaluation of a trained Combined model
    parser_combined_model = subparsers.add_parser('combined_model',
                                                  help='Evaluate a Trained Combined Model.')
    parser_combined_model.add_argument('pretrained_model', type=str,
                                       help='Directory containing pre-trained model architecture definition, model '
                                            'weights and data scaler.')
    parser_combined_model.add_argument('trajectories', type=str,
                                       help='Directory containing skeleton\'s trajectories.')
    parser_combined_model.add_argument('frame_level_anomaly_masks', type=str,
                                       help='Directory containing .npy files for each video in the specific camera.')
    parser_combined_model.add_argument('--video_resolution', default='856x480', type=str,
                                       help='Resolution of the trajectories\' original video(s). It should be '
                                            'specified as WxH, where W is the width and H the height of the video.')
    parser_combined_model.add_argument('--overlapping_trajectories', action='store_true')

    gp_combined_model_logging = parser_combined_model.add_argument_group('Evaluation Logging')
    gp_combined_model_logging.add_argument('--write_reconstructions', action='store_true')
    gp_combined_model_logging.add_argument('--write_bounding_boxes', action='store_true')
    gp_combined_model_logging.add_argument('--write_predictions', action='store_true')
    gp_combined_model_logging.add_argument('--write_predictions_bounding_boxes', action='store_true')
    gp_combined_model_logging.add_argument('--write_anomaly_masks', action='store_true')
    gp_combined_model_logging.add_argument('--write_mistakes', action='store_true')

    parser_combined_model.set_defaults(func=eval_combined_model)

    # Create a sub-parser for evaluation of multiple pre-trained Combined models
    parser_combined_models = subparsers.add_parser('combined_models',
                                                   help='Evaluate Multiple Pre-Trained Combined Models.')
    parser_combined_models.add_argument('pretrained_models', type=str,
                                        help='Directory containing a folder for each pre-trained model.')
    parser_combined_models.add_argument('all_trajectories', type=str,
                                        help='Directory containing a folder for each camera, where each folder '
                                             'contains the trajectories for the associated camera.')
    parser_combined_models.add_argument('all_frame_level_anomaly_masks', type=str,
                                        help='Directory containing a folder for the anomaly masks of each camera.')
    parser_combined_models.add_argument('--video_resolution', default='856x480', type=str,
                                        help='Resolution of the trajectories\' original video(s). It should be '
                                             'specified as WxH, where W is the width and H the height of the video.')
    parser_combined_models.add_argument('--overlapping_trajectories', action='store_true')

    gp_combined_models_logging = parser_combined_models.add_argument_group('Evaluation Logging')
    gp_combined_models_logging.add_argument('--write_reconstructions', action='store_true')
    gp_combined_models_logging.add_argument('--write_bounding_boxes', action='store_true')
    gp_combined_models_logging.add_argument('--write_predictions', action='store_true')
    gp_combined_models_logging.add_argument('--write_predictions_bounding_boxes', action='store_true')
    gp_combined_models_logging.add_argument('--write_anomaly_masks', action='store_true')
    gp_combined_models_logging.add_argument('--write_mistakes', action='store_true')

    parser_combined_models.set_defaults(func=eval_combined_models)

    return parser


def main():
    arg_parser = create_arg_parser()
    args = arg_parser.parse_args()

    configure_gpu_resources(args.gpu_ids, args.gpu_memory_fraction)
    args.func(args)


if __name__ == '__main__':
    main()


================================================
FILE: pretrained/CVPR19/Avenue/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/01_2018_11_13_06_36_20/architecture.txt
================================================
input_length 8
global_input_dim 4
local_input_dim 34
reconstruction_length 8
prediction_length 4
global_hidden_dims 4
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/Avenue/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/01_2018_11_13_06_36_20/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_17_loss,lambda_18_loss,lambda_19_loss,lambda_20_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_17_loss,val_lambda_18_loss,val_lambda_19_loss,val_lambda_20_loss,val_loss
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/01_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/01_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
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FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/02_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/02_2018_11_09_10_55_13/training_report.csv
================================================
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/03_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/03_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/04_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/04_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
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FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/05_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/05_2018_11_09_10_55_13/training_report.csv
================================================
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/06_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/06_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/07_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/07_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
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================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/08_2018_11_09_10_55_13/architecture.txt
================================================
input_length 12
global_input_dim 4
local_input_dim 34
reconstruction_length 12
prediction_length 6
global_hidden_dims 8
local_hidden_dims 16
extra_hidden_dims
output_activation linear
reconstruct_reverse True
reconstruct_original_data True
multiple_outputs True
multiple_outputs_before_concatenation True
cell_type gru
optimiser adam
learning_rate 0.001
loss mse
l1_reg 0.0
l2_reg 0.0


================================================
FILE: pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/08_2018_11_09_10_55_13/training_report.csv
================================================
epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_dense_9_loss,val_lambda_25_loss,val_lambda_26_loss,val_lambda_27_loss,val_lambda_28_loss,val_loss
0,0.029125705570853408,0.029847205965794408,0.04481872873383093,0.18057588653412762,0.04289848201920371,0.1828160467525054,0.5100820570405953,0.004735653380491816,0.004381425982601341,0.012086026719442696,0.11879763961383098,0.014986722538376558,0.1300569647686523,0.2850444321984324
1,0.003241854165861908,0.0031851323763014273,0.009876334753333625,0.11588565249155722,0.011695036169829781,0.13155527143591328,0.27543928012522834,0.0023776189865064874,0.0024051106589492166,0.009010716668064649,0.09673793184883701,0.010148880412539283,0.11334251728568229,0.23402277535705246
2,0.0020624825342874433,0.002006102089736452,0.00835313227154338,0.09841402452287085,0.0095990880651096,0.12052887182151656,0.24096370178156876,0.0017630881913961191,0.0017274214911610338,0.008028584224520642,0.08749710036628021,0.009089501632967647,0.10751897039363802,0.21562466552081577
3,0.0016774065966217032,0.0015777490619820972,0.007578286029095361,0.09051340608964388,0.008821162243286489,0.11477660628245266,0.22494461666658452,0.0015362741197251927,0.0014324511512579159,0.007322589812099016,0.08049985427761444,0.008542061366980467,0.10244517179073018,0.2017784005823145
4,0.0014674535954722072,0.0013391816214609713,0.006977109359735158,0.08338759604302212,0.00837477599049125,0.10954692207356907,0.21109303867650164,0.0013341421436740288,0.001204360283134357,0.0065865317237730125,0.07486775121941305,0.00802377888781253,0.09847737560118623,0.1904939402302045
5,0.00126773872688773,0.0011552416579594434,0.0062616433987845365,0.0781978081057097,0.007849926576264923,0.1060986307932635,0.2008309894045685,0.0011516839574313128,0.0010634435492947532,0.005878902360449001,0.07006104793875495,0.0074801128793446975,0.09618700185862837,0.181822192439197
6,0.0011244726937000159,0.0010185253090466376,0.005660027631498085,0.07379045170810995,0.007323994404372241,0.10375700809888061,0.19267447988688224,0.001032941824393958,0.0009677417909673687,0.0053433147306550825,0.06690054809747951,0.0069516347747478795,0.09452911903527889,0.17572529903388853
7,0.0010313739713858927,0.0009137302752238689,0.00525917910389004,0.07130988207991887,0.006854583052465759,0.10202344332476349,0.18739219143870853,0.0009259232486469904,0.0008540316844220044,0.005032719140451775,0.06514489106107511,0.0065148202225315584,0.09363875407769329,0.1721111397289818
8,0.0009689955233615539,0.0008450602998684311,0.005022780766568064,0.06967693309773679,0.006491371175883964,0.1007059088540619,0.18371105015250952,0.0008970686321361717,0.0007840815429754191,0.004844459692612797,0.06391364448713073,0.006233961138940576,0.09229205226674986,0.16896526658675062
9,0.0009073009811210361,0.0007846467166902128,0.004862820446971536,0.068396189712297,0.006245508318007729,0.09964012450107247,0.1808365902110088,0.0008492880513540157,0.0007379862805851587,0.004717444484585733,0.06297408751873983,0.0060762651680441445,0.09156784045505624,0.16692291138226015
10,0.0008713984784643907,0.0007442243140032974,0.004743495009174236,0.06722119500723142,0.0060859601756558055,0.09872339744531432,0.17838967064593128,0.0008166064721014424,0.0006961534448776536,0.004589391763673556,0.06189762959649776,0.0059102633979516836,0.09080950184867616,0.16471954598593297
11,0.0008374930655080777,0.0007097154738029792,0.004614090591145283,0.06610427180840461,0.005963880475164679,0.09783466622358145,0.1760641188276293,0.0007760136011268825,0.000682990035915917,0.004434138910011677,0.06085281671119167,0.0057830653567488375,0.09012591077254285,0.16265493392947866
12,0.0008119078182204317,0.0006868114957133419,0.004430562028369358,0.06507626391059299,0.00586683593442581,0.09703476066246462,0.17390714128286094,0.0008175804639859116,0.0006848252755577496,0.004236954214453897,0.06028657458519279,0.0057084814914026534,0.08962073318373505,0.1613551491006762
13,0.00078793316796032,0.0006620368048715703,0.004216760175350991,0.0642709923187426,0.005779663354721898,0.0963713871255329,0.17208877246371573,0.000742177354030854,0.0006214537361875933,0.004015095072263449,0.05947589561258966,0.005607937430149475,0.08908702170990003,0.15954958068165
14,0.0007609138284408751,0.0006378616350021573,0.004041573392221517,0.06362585588910852,0.005708239646199687,0.09576604463997652,0.17054048827452328,0.0007504390181574597,0.0006056014401164378,0.003847134944604999,0.059068552681841885,0.005545279048459288,0.08867257292519393,0.15848958010129596
15,0.0007399770816408478,0.0006208302212724182,0.003905731552035015,0.06308347117463348,0.005649199968456911,0.09528266696887738,0.16928187732942868,0.0007097828908710124,0.0006019788487431864,0.0037444637681839105,0.0586804000553054,0.005498083515509075,0.08862764713090408,0.1578623554578101
16,0.0007249796720845992,0.0006091269720176375,0.0038024367257400746,0.06254689069313003,0.005602483977520798,0.09482429336657114,0.16811021055023115,0.0007058312126386224,0.0005830459537522977,0.003671854459287303,0.0582985747371584,0.005445715340339034,0.08838630632671003,0.1570913281167368
17,0.0007041729584668064,0.0005958633875174047,0.0037162222283426477,0.06201326607921183,0.00555915119922131,0.09437668788728606,0.16696536375282542,0.0006832726979294873,0.0005777163133622494,0.0035832805158780485,0.05772806891435237,0.0054127052505592325,0.08774353954996067,0.15572858172813442
18,0.0006902640663810697,0.000588541286631492,0.0036460560377078927,0.06147887513625892,0.00552427287418623,0.09396428301094346,0.16589229277920314,0.0007026915187941777,0.0005837160363433421,0.003500643184844065,0.05733401769520581,0.005372440551235387,0.08765712054590048,0.1551506285470361
19,0.0006774166111763158,0.0005806096782509484,0.003578058721612281,0.060961722517995316,0.005494917325161111,0.09362957452409977,0.16492229951051365,0.0006700181928280259,0.0005610242533677402,0.0034481495421893674,0.05691668846407793,0.005334889160765919,0.0872993711819343,0.15423014044095684
20,0.0006696941205962405,0.0005769004906770275,0.0035235914048983644,0.06035008670967826,0.005469622646649863,0.09325112924299807,0.16384102385973306,0.0006817083533817102,0.0005534360949159364,0.003389804388189079,0.05638474991958361,0.005313467707045145,0.08742187553660594,0.15374504168990508
21,0.0006551617716868758,0.0005686646613549185,0.0034691957698543686,0.059710265386126865,0.0054445852952668475,0.09298172027631647,0.16282959354549922,0.0006370179938616062,0.0005500561844570512,0.0033415180064186975,0.05584394331698661,0.00530494870889132,0.0869558752305012,0.15263335894866786
22,0.0006496127163237465,0.0005604618451861787,0.0034150267829602047,0.05902353493212876,0.005426673733831437,0.09264535053907859,0.16172066027789486,0.0006337918353020746,0.0005511392306442823,0.0032849037496628618,0.05513701335498451,0.005270346842086498,0.08677823088512651,0.1516554271349977
23,0.0006354170545975247,0.0005485939606459503,0.0033539587762678826,0.05835583686175855,0.005403104192313467,0.0923688884215756,0.16066579843361833,0.0006503503439449941,0.0005498156587854059,0.0032263736331705727,0.054710971022445896,0.0052793606467194595,0.08694490543477876,0.15136177681709603
24,0.00062566963722934,0.00053897858208
Download .txt
gitextract_xhfl4dwo/

├── .gitignore
├── README.md
├── environment.yml
├── evaluate.py
├── pretrained/
│   └── CVPR19/
│       ├── Avenue/
│       │   └── combined_model/
│       │       └── _mp_Grobust_Lrobust_Orobust_concatdown_/
│       │           └── 01_2018_11_13_06_36_20/
│       │               ├── architecture.txt
│       │               ├── global_scaler.pkl
│       │               ├── local_scaler.pkl
│       │               ├── out_scaler.pkl
│       │               ├── training_report.csv
│       │               └── weights_082_0.18.h5
│       └── ShanghaiTech/
│           └── combined_model/
│               └── _mp_Grobust_Lrobust_Orobust_concatdown_/
│                   ├── 01_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 02_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 03_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 04_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 05_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 06_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 07_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 08_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 09_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 10_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   ├── 11_2018_11_09_10_55_13/
│                   │   ├── architecture.txt
│                   │   ├── global_scaler.pkl
│                   │   ├── local_scaler.pkl
│                   │   ├── out_scaler.pkl
│                   │   ├── training_report.csv
│                   │   └── weights_065_0.14.h5
│                   └── 12_2018_11_09_10_55_13/
│                       ├── architecture.txt
│                       ├── global_scaler.pkl
│                       ├── local_scaler.pkl
│                       ├── out_scaler.pkl
│                       ├── training_report.csv
│                       └── weights_065_0.14.h5
├── tbad/
│   ├── __init__.py
│   ├── autoencoder/
│   │   ├── __init__.py
│   │   ├── autoencoder.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   └── train.py
│   ├── combined_model/
│   │   ├── __init__.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   ├── fusion.py
│   │   ├── message_passing.py
│   │   └── train.py
│   ├── data.py
│   ├── eval.py
│   ├── gpu.py
│   ├── losses.py
│   ├── rnn_autoencoder/
│   │   ├── __init__.py
│   │   ├── data.py
│   │   ├── evaluate.py
│   │   ├── rnn.py
│   │   └── train.py
│   ├── train.py
│   ├── utils.py
│   └── visualisation.py
├── train.py
├── utils/
│   ├── metrics.py
│   └── score_scaling.py
└── visualise.py
Download .txt
SYMBOL INDEX (260 symbols across 25 files)

FILE: evaluate.py
  function create_arg_parser (line 9) | def create_arg_parser():
  function main (line 145) | def main():

FILE: tbad/autoencoder/autoencoder.py
  class Autoencoder (line 13) | class Autoencoder:
    method __init__ (line 14) | def __init__(self, input_dim, hidden_dims=(16,), output_activation='si...
    method build (line 25) | def build(self):
    method compile (line 34) | def compile(self):
    method train (line 38) | def train(self, X_train, y_train, epochs=5, initial_epoch=0, batch_siz...
    method predict (line 66) | def predict(self, X_test):
    method load_weights (line 69) | def load_weights(self, weights_path):
    method _maybe_write_architecture (line 73) | def _maybe_write_architecture(self, log_dir):
  function load_ae_pretrained_models (line 89) | def load_ae_pretrained_models(all_pretrained_models_path):
  function load_pretrained_ae (line 101) | def load_pretrained_ae(pretrained_model_path):
  function _compute_ae_reconstruction_errors (line 120) | def _compute_ae_reconstruction_errors(X, X_reconstructed, loss):
  function compute_ae_reconstruction_errors (line 125) | def compute_ae_reconstruction_errors(coordinates, coordinates_reconstruc...
  function reconstruct_skeletons (line 133) | def reconstruct_skeletons(anomaly_model, trajectories_coordinates):

FILE: tbad/autoencoder/data.py
  class Trajectory (line 12) | class Trajectory:
    method __init__ (line 13) | def __init__(self, trajectory_id, frames, coordinates):
    method __len__ (line 20) | def __len__(self):
    method use_global_features (line 23) | def use_global_features(self, video_resolution, extract_delta=False, u...
    method use_size_features (line 28) | def use_size_features(self, video_resolution):
    method _extract_size_features (line 31) | def _extract_size_features(self, video_resolution):
    method _extract_global_features (line 36) | def _extract_global_features(self, video_resolution, extract_delta=Fal...
    method _extract_bounding_box_centre (line 55) | def _extract_bounding_box_centre(bb):
    method _extract_bounding_box_measurements (line 62) | def _extract_bounding_box_measurements(bb):
    method change_coordinate_system (line 68) | def change_coordinate_system(self, video_resolution, coordinate_system...
    method _from_global_to_image (line 90) | def _from_global_to_image(coordinates, video_resolution):
    method _from_image_to_global (line 97) | def _from_image_to_global(coordinates, video_resolution):
    method _from_image_to_bounding_box (line 104) | def _from_image_to_bounding_box(coordinates, video_resolution, locatio...
    method _from_image_to_top_left_bounding_box (line 117) | def _from_image_to_top_left_bounding_box(coordinates, video_resolution):
    method _from_image_to_centre_bounding_box (line 131) | def _from_image_to_centre_bounding_box(coordinates, video_resolution):
    method is_short (line 153) | def is_short(self, input_length, input_gap, pred_length=0):
    method input_missing_steps (line 158) | def input_missing_steps(self):
  function load_trajectories (line 184) | def load_trajectories(trajectories_path):
  function extract_global_features (line 202) | def extract_global_features(trajectories, video_resolution, extract_delt...
  function extract_size_features (line 210) | def extract_size_features(trajectories, video_resolution):
  function change_coordinate_system (line 217) | def change_coordinate_system(trajectories, video_resolution, coordinate_...
  function split_into_train_and_test (line 224) | def split_into_train_and_test(trajectories, train_ratio=0.8, seed=42):
  function scale_trajectories (line 260) | def scale_trajectories(X, scaler=None, strategy='zero_one'):
  function scale_trajectories_zero_one (line 279) | def scale_trajectories_zero_one(X, scaler=None):
  function scale_trajectories_three_stds (line 299) | def scale_trajectories_three_stds(X, scaler=None):
  function scale_trajectories_robust (line 313) | def scale_trajectories_robust(X, scaler=None):
  function aggregate_autoencoder_data (line 325) | def aggregate_autoencoder_data(trajectories):
  function aggregate_autoencoder_evaluation_data (line 333) | def aggregate_autoencoder_evaluation_data(trajectories):
  function remove_missing_skeletons (line 343) | def remove_missing_skeletons(X, *arrs):
  function compute_ae_reconstruction_errors (line 353) | def compute_ae_reconstruction_errors(X, reconstructed_X, loss):
  function load_anomaly_masks (line 358) | def load_anomaly_masks(anomaly_masks_path):
  function assemble_ground_truth_and_reconstructions (line 369) | def assemble_ground_truth_and_reconstructions(anomaly_masks, trajectory_...
  function quantile_transform_errors (line 399) | def quantile_transform_errors(y_hats):
  function input_trajectories_missing_steps (line 406) | def input_trajectories_missing_steps(trajectories):

FILE: tbad/autoencoder/evaluate.py
  function eval_ae (line 14) | def eval_ae(args):
  function eval_aes (line 76) | def eval_aes(args):

FILE: tbad/autoencoder/train.py
  function train_ae (line 13) | def train_ae(args):

FILE: tbad/combined_model/data.py
  function inverse_scale (line 8) | def inverse_scale(X, scaler):
  function restore_global_coordinate_system (line 18) | def restore_global_coordinate_system(X, video_resolution):
  function restore_original_trajectory (line 26) | def restore_original_trajectory(reconstructed_X_global, reconstructed_X_...
  function write_reconstructed_trajectories (line 41) | def write_reconstructed_trajectories(pretrained_model_path, reconstructe...
  function extract_video_and_skeleton_ids (line 82) | def extract_video_and_skeleton_ids(reconstruction_ids):
  function detect_most_anomalous_or_most_normal_frames (line 93) | def detect_most_anomalous_or_most_normal_frames(reconstruction_errors, a...
  function compute_num_frames_per_video (line 106) | def compute_num_frames_per_video(anomaly_masks):
  function write_predicted_masks (line 115) | def write_predicted_masks(pretrained_model_path, num_frames_per_video, a...
  function compute_worst_mistakes (line 151) | def compute_worst_mistakes(y_true, y_hat, video_ids, error_type='false_p...
  function generate_array_of_frames (line 185) | def generate_array_of_frames(x):
  function write_worst_mistakes (line 195) | def write_worst_mistakes(pretrained_model_path, worst_false_positives, w...
  function clip_trajectories (line 213) | def clip_trajectories(trajectories, video_resolution, margin=0.05):
  function clip_trajectory (line 222) | def clip_trajectory(trajectory, video_resolution, margin=0.05):
  function normalise_errors_by_bounding_box_area (line 250) | def normalise_errors_by_bounding_box_area(errors, X, video_resolution):

FILE: tbad/combined_model/evaluate.py
  function eval_combined_model (line 35) | def eval_combined_model(args):
  function eval_combined_models (line 274) | def eval_combined_models(args):

FILE: tbad/combined_model/fusion.py
  class CombinedEncoderDecoder (line 14) | class CombinedEncoderDecoder:
    method __init__ (line 15) | def __init__(self, input_length, global_input_dim, local_input_dim, re...
    method build (line 42) | def build(self):
    method train (line 168) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 229) | def predict(self, X_test, batch_size=256):
    method reconstruct (line 234) | def reconstruct(self, global_features, local_features):
    method compile (line 246) | def compile(self):
    method load_weights (line 250) | def load_weights(self, weights_path):
    method _construct_input_data (line 254) | def _construct_input_data(self, X_global, X_local):
    method _construct_output_data (line 272) | def _construct_output_data(self, X_global, X_local, y_global=None, y_l...
    method _construct_output_data_alt (line 301) | def _construct_output_data_alt(self, X_out, y_out=None, X_global=None,...
    method _maybe_write_architecture (line 329) | def _maybe_write_architecture(self, log_dir):
  function load_complete_rnn_ae_pretrained_models (line 358) | def load_complete_rnn_ae_pretrained_models(all_pretrained_models_path):
  function load_pretrained_combined_model (line 373) | def load_pretrained_combined_model(pretrained_model_path, message_passin...
  function coordinate_change (line 406) | def coordinate_change(x):

FILE: tbad/combined_model/message_passing.py
  class MessagePassingEncoderDecoder (line 12) | class MessagePassingEncoderDecoder:
    method __init__ (line 13) | def __init__(self, input_length, global_input_dim, local_input_dim, re...
    method build (line 40) | def build(self):
    method train (line 248) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 307) | def predict(self, X_test, batch_size=256):
    method compile (line 312) | def compile(self):
    method load_weights (line 316) | def load_weights(self, weights_path):
    method _construct_input_data (line 319) | def _construct_input_data(self, X_global, X_local):
    method _construct_output_data (line 328) | def _construct_output_data(self, X_global, X_local, y_global=None, y_l...
    method _construct_output_data_alt (line 357) | def _construct_output_data_alt(self, X_out, y_out=None, X_global=None,...
    method _maybe_write_architecture (line 385) | def _maybe_write_architecture(self, log_dir):

FILE: tbad/combined_model/train.py
  function train_combined_model (line 17) | def train_combined_model(args):

FILE: tbad/data.py
  class Trajectory (line 11) | class Trajectory:
    method __init__ (line 12) | def __init__(self, trajectory_id, frames, coordinates):
    method __len__ (line 18) | def __len__(self):
  function load_trajectories (line 22) | def load_trajectories(trajectories_path):
  function is_short_trajectory (line 57) | def is_short_trajectory(trajectory_coordinates, input_length, input_gap=...
  function remove_short_trajectories (line 77) | def remove_short_trajectories(trajectories_coordinates, input_length, in...
  function input_trajectory_missing_steps (line 100) | def input_trajectory_missing_steps(trajectory_coordinates):
  function input_trajectories_missing_steps (line 134) | def input_trajectories_missing_steps(trajectories_coordinates):
  function normalise_trajectory_video_resolution (line 141) | def normalise_trajectory_video_resolution(trajectory_coordinates, video_...
  function normalise_trajectories_video_resolution (line 157) | def normalise_trajectories_video_resolution(trajectories_coordinates, vi...
  function normalise_trajectories (line 178) | def normalise_trajectories(trajectories_coordinates, video_resolution, s...
  function normalise_bounding_box (line 192) | def normalise_bounding_box(trajectory_coordinates, video_resolution):
  function normalise_bounding_boxes (line 210) | def normalise_bounding_boxes(trajectories_coordinates, video_resolution):
  function normalise_joints (line 218) | def normalise_joints(X, min_max_values=None):
  function denormalise_trajectory (line 235) | def denormalise_trajectory(trajectory_coordinates, video_resolution):
  function denormalise_trajectories (line 241) | def denormalise_trajectories(trajectories_coordinates, video_resolution):
  function collect_trajectories (line 264) | def collect_trajectories(trajectory_coordinates, input_length, input_gap...
  function collect_test_trajectories (line 327) | def collect_test_trajectories(trajectory_coordinates, trajectory_frames,...
  function collect_overlapping_trajectories (line 360) | def collect_overlapping_trajectories(trajectory_coordinates, trajectory_...
  function pad_trajectory (line 413) | def pad_trajectory(trajectory_coordinates, padding_length):
  function shuffle_data (line 440) | def shuffle_data(X, y=None, seed=None):
  function input2table (line 461) | def input2table(reconstructed_trajectory):
  function write_trajectories (line 475) | def write_trajectories(write_path, trajectories):
  function load_anomaly_masks (line 497) | def load_anomaly_masks(masks_path, camera_id=None):
  function assemble_trajectories (line 521) | def assemble_trajectories(trajectories_frames, trajectories_coordinates,...
  function detect_anomalous_frames (line 534) | def detect_anomalous_frames(reconstruction_errors, anomaly_threshold):
  function detect_most_anomalous_or_most_normal_frames (line 542) | def detect_most_anomalous_or_most_normal_frames(reconstruction_errors, a...
  function uniquify_reconstruction (line 560) | def uniquify_reconstruction(trajectory_frames, reconstructed_coordinates):
  function uniquify_reconstructions (line 588) | def uniquify_reconstructions(reconstructed_trajectories):
  function discard_steps_from_padded_frames (line 617) | def discard_steps_from_padded_frames(reconstructed_trajectories, origina...
  function denormalise_all_trajectories (line 645) | def denormalise_all_trajectories(reconstructed_trajectories, video_resol...
  function write_all_reconstructed_trajectories (line 673) | def write_all_reconstructed_trajectories(reconstructed_trajectories, wri...
  function extract_input_dim (line 705) | def extract_input_dim(trajectories_coordinates):
  function reverse_trajectories (line 710) | def reverse_trajectories(trajectories_coordinates):
  function collect_skeletons (line 717) | def collect_skeletons(trajectories_frames, trajectories_coordinates):
  function remove_missing_skeletons (line 730) | def remove_missing_skeletons(trajectories_frames, trajectories_coordinat...
  function extract_center_of_mass (line 742) | def extract_center_of_mass(trajectory_coordinates):
  function extract_centre_of_bounding_box (line 760) | def extract_centre_of_bounding_box(trajectory_coordinates, video_resolut...
  function extract_width_height (line 769) | def extract_width_height(trajectory_coordinates, video_resolution):
  function extract_global_features_from_trajectory (line 778) | def extract_global_features_from_trajectory(trajectory_coordinates, vide...
  function extract_global_features (line 786) | def extract_global_features(trajectories_coordinates, video_resolution):
  function concatenate_features (line 794) | def concatenate_features(global_features, local_features):
  function local_to_global_coordinates (line 802) | def local_to_global_coordinates(reconstructed_features, video_resolution):
  function discard_global_features (line 825) | def discard_global_features(reconstructed_features):
  class StdScaler (line 838) | class StdScaler:
    method __init__ (line 839) | def __init__(self, stds=3):
    method fit (line 844) | def fit(self, X):
    method transform (line 848) | def transform(self, X):
    method inverse_transform (line 856) | def inverse_transform(self, X):
  function scale_trajectories_three_stds (line 865) | def scale_trajectories_three_stds(trajectories_coordinates, scaler=None):
  function scale_trajectories_zero_one (line 893) | def scale_trajectories_zero_one(trajectories_coordinates, scaler=None):
  function scale_trajectories (line 929) | def scale_trajectories(trajectories_coordinates, scaler=None, strategy='...
  function inverse_scale_trajectories (line 940) | def inverse_scale_trajectories(reconstructed_trajectories, global_scaler...
  function inverse_single_scale_trajectories (line 953) | def inverse_single_scale_trajectories(reconstructed_trajectories, scaler):
  function _train_test_split_through_time (line 965) | def _train_test_split_through_time(trajectory_id, trajectory_coordinates...
  function train_test_split_through_time (line 990) | def train_test_split_through_time(trajectories_coordinates, input_length...
  function train_test_split_trajectories (line 1013) | def train_test_split_trajectories(trajectories_frames, trajectories_coor...
  function pull_global_features (line 1036) | def pull_global_features(all_reconstructed_features):
  function compute_bounding_boxes_from_global_features (line 1045) | def compute_bounding_boxes_from_global_features(all_reconstructed_featur...
  function compute_bounding_boxes_from_image_features (line 1058) | def compute_bounding_boxes_from_image_features(all_reconstructed_traject...
  function change_coordinate_system (line 1071) | def change_coordinate_system(trajectories_coordinates, video_resolution,...
  function from_image_to_global (line 1095) | def from_image_to_global(trajectories_coordinates, video_resolution):
  function from_global_to_image (line 1104) | def from_global_to_image(trajectories_coordinates, video_resolution):
  function from_global_to_image_all_cameras (line 1113) | def from_global_to_image_all_cameras(all_reconstructed_trajectories, vid...
  function from_image_to_bounding_box (line 1121) | def from_image_to_bounding_box(trajectories_coordinates, video_resolutio...
  function from_image_to_top_left_bounding_box (line 1135) | def from_image_to_top_left_bounding_box(trajectory_coordinates, video_re...
  function from_image_to_centre_bounding_box (line 1149) | def from_image_to_centre_bounding_box(trajectory_coordinates, video_reso...
  function compute_worst_mistakes (line 1166) | def compute_worst_mistakes(y_true, y_hat, video_ids, type='false_positiv...
  function generate_array_of_frames (line 1195) | def generate_array_of_frames(x):
  function write_all_worst_mistakes (line 1205) | def write_all_worst_mistakes(all_pretrained_models_path, worst_false_pos...

FILE: tbad/eval.py
  function eval_ae_models (line 24) | def eval_ae_models(args):
  function eval_rnn_ae_models (line 101) | def eval_rnn_ae_models(args):
  function eval_complete_rnn_ae_models (line 236) | def eval_complete_rnn_ae_models(args):
  function compute_all_cameras_performance_metrics (line 402) | def compute_all_cameras_performance_metrics(args):
  function combine_global_and_local_losses (line 459) | def combine_global_and_local_losses(args):

FILE: tbad/gpu.py
  function configure_gpu_resources (line 10) | def configure_gpu_resources(gpu_ids, gpu_memory_fraction):

FILE: tbad/losses.py
  function mean_squared_error (line 6) | def mean_squared_error(original_trajectory, reconstructed_trajectory):
  function balanced_mean_squared_error (line 14) | def balanced_mean_squared_error(original_trajectory, reconstructed_traje...
  function mean_absolute_error (line 23) | def mean_absolute_error(original_trajectory, reconstructed_trajectory):
  function balanced_mean_absolute_error (line 32) | def balanced_mean_absolute_error(original_trajectory, reconstructed_traj...
  function binary_crossentropy (line 42) | def binary_crossentropy(original_trajectory, reconstructed_trajectory):
  function modified_mean_squared_error (line 51) | def modified_mean_squared_error(y_true, y_pred):
  function modified_mean_squared_error_2 (line 57) | def modified_mean_squared_error_2(y_true, y_pred):
  function modified_mean_squared_error_3 (line 68) | def modified_mean_squared_error_3(y_true, y_pred):
  function modified_mean_absolute_error (line 79) | def modified_mean_absolute_error(y_true, y_pred):
  function modified_balanced_mean_absolute_error (line 90) | def modified_balanced_mean_absolute_error(y_true, y_pred):
  function modified_binary_crossentropy (line 102) | def modified_binary_crossentropy(y_true, y_pred):
  function modified_binary_crossentropy_2 (line 108) | def modified_binary_crossentropy_2(y_true, y_pred):

FILE: tbad/rnn_autoencoder/data.py
  function remove_short_trajectories (line 8) | def remove_short_trajectories(trajectories, input_length, input_gap, pre...
  function aggregate_rnn_autoencoder_data (line 17) | def aggregate_rnn_autoencoder_data(trajectories, input_length, input_gap...
  function _aggregate_rnn_autoencoder_data (line 34) | def _aggregate_rnn_autoencoder_data(coordinates, input_length, input_gap...
  function aggregate_rnn_ae_evaluation_data (line 57) | def aggregate_rnn_ae_evaluation_data(trajectories, input_length, input_g...
  function _aggregate_rnn_ae_evaluation_data (line 70) | def _aggregate_rnn_ae_evaluation_data(trajectory, input_length):
  function compute_rnn_ae_reconstruction_errors (line 89) | def compute_rnn_ae_reconstruction_errors(X, reconstructed_X, loss):
  function summarise_reconstruction_errors (line 102) | def summarise_reconstruction_errors(reconstruction_errors, frames, traje...
  function summarise_reconstruction_errors_per_frame (line 121) | def summarise_reconstruction_errors_per_frame(errors, frames):
  function summarise_reconstruction (line 131) | def summarise_reconstruction(reconstructed_X, frames, trajectory_ids):
  function summarise_reconstruction_per_frame (line 159) | def summarise_reconstruction_per_frame(recs, frames):
  function retrieve_future_skeletons (line 169) | def retrieve_future_skeletons(trajectories_ids, X, pred_length):
  function discard_information_from_padded_frames (line 189) | def discard_information_from_padded_frames(pred_ids, pred_frames, pred_e...

FILE: tbad/rnn_autoencoder/evaluate.py
  function eval_rnn_ae (line 17) | def eval_rnn_ae(args):
  function eval_rnn_aes (line 161) | def eval_rnn_aes(args):

FILE: tbad/rnn_autoencoder/rnn.py
  class RNNEncoderDecoder (line 12) | class RNNEncoderDecoder:
    method __init__ (line 13) | def __init__(self, input_length, input_dim, reconstruction_length, inp...
    method build (line 37) | def build(self):
    method compile (line 103) | def compile(self):
    method load_weights (line 107) | def load_weights(self, weights_path):
    method _create_reconstruction_input_zeros (line 110) | def _create_reconstruction_input_zeros(self, n_examples):
    method _create_prediction_input_zeros (line 116) | def _create_prediction_input_zeros(self, n_examples):
    method _construct_input_data (line 122) | def _construct_input_data(self, X):
    method _construct_output_data (line 133) | def _construct_output_data(self, X, y=None):
    method train (line 147) | def train(self, X_train, y_train=None, epochs=10, initial_epoch=0, bat...
    method predict (line 181) | def predict(self, X_test, batch_size=256):
    method eval (line 185) | def eval(self, X_test, batch_size=256):
    method _maybe_write_architecture (line 190) | def _maybe_write_architecture(self, log_dir):
  function load_architecture_specification (line 215) | def load_architecture_specification(model_architecture):
  function model_from_architecture_specification (line 244) | def model_from_architecture_specification(architecture_specification):
  function reconstruct_trajectories (line 248) | def reconstruct_trajectories(anomaly_model, trajectories_coordinates):
  function load_pretrained_rnn_ae (line 258) | def load_pretrained_rnn_ae(pretrained_model_path):

FILE: tbad/rnn_autoencoder/train.py
  function train_rnn_ae (line 16) | def train_rnn_ae(args):
  function produce_data_from_model_type (line 95) | def produce_data_from_model_type(model_type, trajectories, video_resolut...

FILE: tbad/train.py
  function train_ae (line 22) | def train_ae(args):
  function train_rnn_ae (line 89) | def train_rnn_ae(args):
  function train_complete_rnn_ae (line 216) | def train_complete_rnn_ae(args):

FILE: tbad/utils.py
  function select_optimiser (line 14) | def select_optimiser(optimiser, learning_rate):
  function select_loss (line 24) | def select_loss(loss_name):
  function select_cell (line 40) | def select_cell(cell_type, hidden_dim, l1=0.0, l2=0.0):
  function set_up_logging (line 55) | def set_up_logging(camera_id, root_log_dir=None, resume_training=None):
  function resume_training_from_last_epoch (line 67) | def resume_training_from_last_epoch(model, resume_training=None):
  function select_scaler_model (line 76) | def select_scaler_model(scaler_name):

FILE: tbad/visualisation.py
  function compute_bounding_box (line 31) | def compute_bounding_box(keypoints, video_resolution, return_discrete_va...
  function compute_chest_centred_bounding_box (line 66) | def compute_chest_centred_bounding_box(keypoints, video_resolution):
  function insert_anomaly_mask_from_bounding_box (line 104) | def insert_anomaly_mask_from_bounding_box(mask, bounding_box):
  function render_article_main_figure (line 123) | def render_article_main_figure(write_path, frames_path, gt_trajectories_...
  function render_article_main_figure_2 (line 166) | def render_article_main_figure_2(write_path, frames_path, gt_trajectorie...
  function draw_skeleton (line 189) | def draw_skeleton(frame, keypoints, colour, dotted=False):
  function draw_line (line 216) | def draw_line(img, pt1, pt2, color, thickness=1, style='dotted', gap=10):
  function draw_poly (line 241) | def draw_poly(img, pts, color, thickness=1, style='dotted'):
  function draw_rect (line 251) | def draw_rect(img, pt1, pt2, color, thickness=1, style='dotted'):
  function render_trajectories_skeletons (line 256) | def render_trajectories_skeletons(args):
  function _render_trajectories_skeletons (line 296) | def _render_trajectories_skeletons(write_dir, frames_path, gt_trajectori...
  function maybe_create_dir (line 406) | def maybe_create_dir(dir_path):
  function compute_simple_bounding_box (line 414) | def compute_simple_bounding_box(skeleton):
  function render_video_diff_heatmaps (line 425) | def render_video_diff_heatmaps(args):
  function render_video_diff_heatmaps_hasan (line 452) | def render_video_diff_heatmaps_hasan(args):
  function render_video_heatmaps_mpedrnn (line 474) | def render_video_heatmaps_mpedrnn(args):

FILE: train.py
  function create_arg_parser (line 9) | def create_arg_parser():
  function main (line 225) | def main():

FILE: utils/metrics.py
  function frame_level_metrics (line 8) | def frame_level_metrics(anomaly_masks, reconstruction_errors, reconstruc...
  function ground_truth_and_reconstructions (line 30) | def ground_truth_and_reconstructions(anomaly_masks, reconstruction_error...
  function summarise_errors_per_frame (line 53) | def summarise_errors_per_frame(trajectory_errors_per_frame, trajectory_f...
  function compute_reconstruction_errors (line 70) | def compute_reconstruction_errors(trajectories_coordinates, reconstructe...
  function summarise_reconstruction_errors (line 83) | def summarise_reconstruction_errors(reconstruction_errors, trajectories_...
  function discard_errors_from_padded_frames (line 93) | def discard_errors_from_padded_frames(reconstruction_errors, original_tr...

FILE: utils/score_scaling.py
  class ScoreNormalization (line 8) | class ScoreNormalization:
    method __init__ (line 9) | def __init__(self, method="KDE", options=None):
    method fit (line 30) | def fit(self, X):
    method score (line 43) | def score(self, x):
    method get_fit_params_string (line 57) | def get_fit_params_string(self):
    method get_fit_params (line 69) | def get_fit_params(self):
  function normalizing_lstm_autoencoder (line 82) | def normalizing_lstm_autoencoder(training_sample_rate=1):
  function normalizing_3Dconv (line 131) | def normalizing_3Dconv():
  function visualize (line 135) | def visualize(X, X_test, dens_train, dens, plot_title):

FILE: visualise.py
  function create_arg_parser (line 7) | def create_arg_parser():
  function main (line 107) | def main():
Condensed preview — 110 files, each showing path, character count, and a content snippet. Download the .json file or copy for the full structured content (657K chars).
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  {
    "path": ".gitignore",
    "chars": 1694,
    "preview": "# Byte-compiled / optimized / DLL files\n__pycache__/\n*.py[cod]\n*$py.class\n\n# C extensions\n*.so\n\n# Distribution / packagi"
  },
  {
    "path": "README.md",
    "chars": 2280,
    "preview": "This is the code for the CVPR'19 paper [\"Learning Regularity in Skeleton Trajectories for Anomaly Detection in Videos\".]"
  },
  {
    "path": "environment.yml",
    "chars": 3232,
    "preview": "name: tbad\nchannels:\n  - defaults\ndependencies:\n  - _tflow_180_select=1.0=gpu\n  - absl-py=0.2.2=py36_0\n  - astor=0.6.2=p"
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    "path": "evaluate.py",
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    "preview": "import argparse\n\nfrom tbad.autoencoder.evaluate import eval_ae, eval_aes\nfrom tbad.rnn_autoencoder.evaluate import eval_"
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  {
    "path": "pretrained/CVPR19/Avenue/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/01_2018_11_13_06_36_20/architecture.txt",
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  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/05_2018_11_09_10_55_13/architecture.txt",
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/05_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/06_2018_11_09_10_55_13/architecture.txt",
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/07_2018_11_09_10_55_13/architecture.txt",
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/08_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
    "preview": "epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_"
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  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/09_2018_11_09_10_55_13/architecture.txt",
    "chars": 385,
    "preview": "input_length 12\nglobal_input_dim 4\nlocal_input_dim 34\nreconstruction_length 12\nprediction_length 6\nglobal_hidden_dims 8\n"
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/09_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
    "preview": "epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_"
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  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/10_2018_11_09_10_55_13/architecture.txt",
    "chars": 385,
    "preview": "input_length 12\nglobal_input_dim 4\nlocal_input_dim 34\nreconstruction_length 12\nprediction_length 6\nglobal_hidden_dims 8\n"
  },
  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/10_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
    "preview": "epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_"
  },
  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/11_2018_11_09_10_55_13/architecture.txt",
    "chars": 385,
    "preview": "input_length 12\nglobal_input_dim 4\nlocal_input_dim 34\nreconstruction_length 12\nprediction_length 6\nglobal_hidden_dims 8\n"
  },
  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/11_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
    "preview": "epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_"
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  {
    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/12_2018_11_09_10_55_13/architecture.txt",
    "chars": 385,
    "preview": "input_length 12\nglobal_input_dim 4\nlocal_input_dim 34\nreconstruction_length 12\nprediction_length 6\nglobal_hidden_dims 8\n"
  },
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    "path": "pretrained/CVPR19/ShanghaiTech/combined_model/_mp_Grobust_Lrobust_Orobust_concatdown_/12_2018_11_09_10_55_13/training_report.csv",
    "chars": 20345,
    "preview": "epoch,dense_14_loss,dense_9_loss,lambda_25_loss,lambda_26_loss,lambda_27_loss,lambda_28_loss,loss,val_dense_14_loss,val_"
  },
  {
    "path": "tbad/__init__.py",
    "chars": 0,
    "preview": ""
  },
  {
    "path": "tbad/autoencoder/__init__.py",
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    "preview": ""
  },
  {
    "path": "tbad/autoencoder/autoencoder.py",
    "chars": 5602,
    "preview": "import os\n\nimport keras\nfrom keras.layers import Input, Dense\nfrom keras.models import Model\nfrom sklearn.externals impo"
  },
  {
    "path": "tbad/autoencoder/data.py",
    "chars": 17004,
    "preview": "# Temporary data manipulating routines for test\nimport os\n\nimport numpy as np\nfrom sklearn.preprocessing import MinMaxSc"
  },
  {
    "path": "tbad/autoencoder/evaluate.py",
    "chars": 4782,
    "preview": "from collections import namedtuple\nimport os\n\nimport numpy as np\nfrom sklearn.metrics import roc_auc_score, average_prec"
  },
  {
    "path": "tbad/autoencoder/train.py",
    "chars": 3297,
    "preview": "import os\n\nimport numpy as np\nfrom sklearn.externals import joblib\nfrom sklearn.utils import shuffle\n\nfrom tbad.autoenco"
  },
  {
    "path": "tbad/combined_model/__init__.py",
    "chars": 0,
    "preview": ""
  },
  {
    "path": "tbad/combined_model/data.py",
    "chars": 10962,
    "preview": "import os\n\nimport numpy as np\n\nfrom tbad.visualisation import insert_anomaly_mask_from_bounding_box, compute_bounding_bo"
  },
  {
    "path": "tbad/combined_model/evaluate.py",
    "chars": 21182,
    "preview": "from collections import namedtuple\nfrom copy import deepcopy\nimport os\n\nimport numpy as np\nfrom sklearn.metrics import r"
  },
  {
    "path": "tbad/combined_model/fusion.py",
    "chars": 20709,
    "preview": "import os\n\nimport keras\nfrom keras.models import Model\nfrom keras.layers import Input, RNN, Dense\nimport numpy as np\nfro"
  },
  {
    "path": "tbad/combined_model/message_passing.py",
    "chars": 21465,
    "preview": "import os\n\nimport keras\nimport keras.backend as K\nfrom keras.models import Model\nfrom keras.layers import Input, RNN, De"
  },
  {
    "path": "tbad/combined_model/train.py",
    "chars": 13191,
    "preview": "from copy import deepcopy\nimport os\n\nimport numpy as np\nfrom sklearn.externals import joblib\nfrom sklearn.utils import s"
  },
  {
    "path": "tbad/data.py",
    "chars": 61145,
    "preview": "import os\nfrom copy import deepcopy\n\nimport numpy as np\nfrom sklearn.preprocessing import MinMaxScaler\n\nfrom tbad.visual"
  },
  {
    "path": "tbad/eval.py",
    "chars": 30144,
    "preview": "from copy import deepcopy\nimport os\n\nimport numpy as np\nfrom sklearn.metrics import roc_auc_score, average_precision_sco"
  },
  {
    "path": "tbad/gpu.py",
    "chars": 849,
    "preview": "import os\n\nimport tensorflow as tf\nimport keras\n\n\nos.environ['TF_CPP_MIN_LOG_LEVEL'] = '1'\n\n\ndef configure_gpu_resources"
  },
  {
    "path": "tbad/losses.py",
    "chars": 4047,
    "preview": "import numpy as np\nimport tensorflow as tf\nimport keras.backend as K\n\n\ndef mean_squared_error(original_trajectory, recon"
  },
  {
    "path": "tbad/rnn_autoencoder/__init__.py",
    "chars": 0,
    "preview": ""
  },
  {
    "path": "tbad/rnn_autoencoder/data.py",
    "chars": 8707,
    "preview": "# Temporary data manipulating routines for test\nimport numpy as np\n\nfrom tbad.losses import binary_crossentropy, mean_ab"
  },
  {
    "path": "tbad/rnn_autoencoder/evaluate.py",
    "chars": 11978,
    "preview": "from collections import namedtuple\nfrom copy import deepcopy\nimport os\n\nimport numpy as np\nfrom sklearn.metrics import r"
  },
  {
    "path": "tbad/rnn_autoencoder/rnn.py",
    "chars": 12293,
    "preview": "import os\n\nimport keras\nfrom keras.models import Model\nfrom keras.layers import Input, RNN, Dense, Lambda\nimport numpy a"
  },
  {
    "path": "tbad/rnn_autoencoder/train.py",
    "chars": 12035,
    "preview": "from copy import deepcopy\nimport os\n\nimport numpy as np\nfrom sklearn.externals import joblib\nfrom sklearn.utils import s"
  },
  {
    "path": "tbad/train.py",
    "chars": 22493,
    "preview": "from copy import deepcopy\nimport os\nimport warnings\n\nimport numpy as np\nfrom sklearn.externals import joblib\nfrom sklear"
  },
  {
    "path": "tbad/utils.py",
    "chars": 3807,
    "preview": "import os\nfrom datetime import datetime\n\nfrom keras.layers import SimpleRNNCell, GRUCell, LSTMCell\nfrom keras.optimizers"
  },
  {
    "path": "tbad/visualisation.py",
    "chars": 27525,
    "preview": "import os\n\nimport cv2 as cv\nimport numpy as np\nfrom sklearn.preprocessing import MinMaxScaler\n\n\nCOLOURS = {0: (0, 0, 0),"
  },
  {
    "path": "train.py",
    "chars": 17206,
    "preview": "import argparse\n\nfrom tbad.gpu import configure_gpu_resources\nfrom tbad.autoencoder.train import train_ae\nfrom tbad.rnn_"
  },
  {
    "path": "utils/metrics.py",
    "chars": 5245,
    "preview": "import numpy as np\nfrom sklearn.metrics import roc_auc_score, average_precision_score\n\nfrom tbad.data import input2table"
  },
  {
    "path": "utils/score_scaling.py",
    "chars": 6755,
    "preview": "import numpy as np\nimport matplotlib.pyplot as plt\nfrom scipy.stats import norm\nfrom sklearn.neighbors import KernelDens"
  },
  {
    "path": "visualise.py",
    "chars": 8029,
    "preview": "import argparse\n\nfrom tbad.visualisation import render_trajectories_skeletons, render_video_diff_heatmaps\nfrom tbad.visu"
  }
]

// ... and 52 more files (download for full content)

About this extraction

This page contains the full source code of the RomeroBarata/skeleton_based_anomaly_detection GitHub repository, extracted and formatted as plain text for AI agents and large language models (LLMs). The extraction includes 110 files (626.7 KB), approximately 204.5k tokens, and a symbol index with 260 extracted functions, classes, methods, constants, and types. Use this with OpenClaw, Claude, ChatGPT, Cursor, Windsurf, or any other AI tool that accepts text input. You can copy the full output to your clipboard or download it as a .txt file.

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